Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/abbcf45cf958d9521d7b32f5c30ca9/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/abbcf45cf958d9521d7b32f5c30ca9/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/9446de7408b0a778467528f34be9ec/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai ==> STAGING COMPLETE (5 inputs) Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar Running: java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT 08:46:19.152 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so [Mon Jun 08 08:46:19 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false [Mon Jun 08 08:46:19 GMT 2026] Executing as ?@nf-55abbcf45cf958d9521d7b32f5c30ca9-de0b3-bg6x8 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0 INFO 2026-06-08 08:46:19 MarkDuplicates Start of doWork freeMemory: 105827832; totalMemory: 134217728; maxMemory: 63585648640 INFO 2026-06-08 08:46:19 MarkDuplicates Reading input file and constructing read end information. INFO 2026-06-08 08:46:19 MarkDuplicates Will retain up to 230382784 data points before spilling to disk. INFO 2026-06-08 08:46:23 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,310,770 INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 2099 as yet unmatched pairs. 53 records in RAM. INFO 2026-06-08 08:46:25 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 2s. Last read position: chr1:1,704,587 INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 4608 as yet unmatched pairs. 209 records in RAM. INFO 2026-06-08 08:46:27 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 1s. Last read position: chr1:6,249,399 INFO 2026-06-08 08:46:27 MarkDuplicates Tracking 6682 as yet unmatched pairs. 123 records in RAM. INFO 2026-06-08 08:46:29 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 1s. Last read position: chr1:9,355,885 INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 8763 as yet unmatched pairs. 307 records in RAM. INFO 2026-06-08 08:46:31 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:11,925,641 INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 11188 as yet unmatched pairs. 852 records in RAM. INFO 2026-06-08 08:46:33 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:15,933,402 INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 12335 as yet unmatched pairs. 175 records in RAM. INFO 2026-06-08 08:46:35 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:17,696,904 INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 14902 as yet unmatched pairs. 1010 records in RAM. INFO 2026-06-08 08:46:36 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:20,633,893 INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 15973 as yet unmatched pairs. 234 records in RAM. INFO 2026-06-08 08:46:39 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:21,838,831 INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 19290 as yet unmatched pairs. 1705 records in RAM. INFO 2026-06-08 08:46:41 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:21,878,603 INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 20618 as yet unmatched pairs. 1179 records in RAM. INFO 2026-06-08 08:46:43 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:23,193,436 INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 21422 as yet unmatched pairs. 52 records in RAM. INFO 2026-06-08 08:46:45 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:26,275,007 INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 23141 as yet unmatched pairs. 116 records in RAM. INFO 2026-06-08 08:46:47 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:27,551,111 INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 25113 as yet unmatched pairs. 351 records in RAM. INFO 2026-06-08 08:46:49 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:31,583,190 INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 27009 as yet unmatched pairs. 330 records in RAM. INFO 2026-06-08 08:46:51 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:32,331,678 INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 28936 as yet unmatched pairs. 186 records in RAM. INFO 2026-06-08 08:46:53 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:35,453,599 INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 30662 as yet unmatched pairs. 59 records in RAM. INFO 2026-06-08 08:46:55 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:39,205,047 INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 32727 as yet unmatched pairs. 308 records in RAM. INFO 2026-06-08 08:46:57 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 2s. Last read position: chr1:40,076,903 INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 34555 as yet unmatched pairs. 549 records in RAM. INFO 2026-06-08 08:46:59 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:43,597,855 INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 36144 as yet unmatched pairs. 336 records in RAM. INFO 2026-06-08 08:47:01 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:45,829,454 INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 38090 as yet unmatched pairs. 401 records in RAM. INFO 2026-06-08 08:47:02 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:52,904,806 INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 39777 as yet unmatched pairs. 243 records in RAM. INFO 2026-06-08 08:47:04 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:62,561,629 INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 41481 as yet unmatched pairs. 102 records in RAM. INFO 2026-06-08 08:47:06 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:85,159,070 INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 42977 as yet unmatched pairs. 52 records in RAM. INFO 2026-06-08 08:47:08 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:96,679,274 INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 44477 as yet unmatched pairs. 16 records in RAM. INFO 2026-06-08 08:47:09 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:109,758,627 INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 46533 as yet unmatched pairs. 361 records in RAM. INFO 2026-06-08 08:47:11 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:113,940,985 INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 48124 as yet unmatched pairs. 160 records in RAM. INFO 2026-06-08 08:47:12 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:116,401,220 INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 52247 as yet unmatched pairs. 2779 records in RAM. INFO 2026-06-08 08:47:15 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:119,963,639 INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 52397 as yet unmatched pairs. 1095 records in RAM. INFO 2026-06-08 08:47:17 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 2s. Last read position: chr1:145,937,679 INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 52391 as yet unmatched pairs. 146 records in RAM. INFO 2026-06-08 08:47:18 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:148,569,296 INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 53076 as yet unmatched pairs. 38 records in RAM. INFO 2026-06-08 08:47:20 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:149,860,940 INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 53921 as yet unmatched pairs. 8 records in RAM. INFO 2026-06-08 08:47:22 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 2s. Last read position: chr1:150,806,728 INFO 2026-06-08 08:47:22 MarkDuplicates Tracking 55949 as yet unmatched pairs. 196 records in RAM. INFO 2026-06-08 08:47:24 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:152,310,227 INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 57582 as yet unmatched pairs. 201 records in RAM. INFO 2026-06-08 08:47:26 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 2s. Last read position: chr1:154,172,914 INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 61979 as yet unmatched pairs. 3060 records in RAM. INFO 2026-06-08 08:47:28 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:154,988,467 INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 60898 as yet unmatched pairs. 421 records in RAM. INFO 2026-06-08 08:47:29 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:155,661,356 INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 62302 as yet unmatched pairs. 186 records in RAM. INFO 2026-06-08 08:47:31 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:156,135,954 INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 66105 as yet unmatched pairs. 1856 records in RAM. INFO 2026-06-08 08:47:33 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:156,676,787 INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 66386 as yet unmatched pairs. 83 records in RAM. INFO 2026-06-08 08:47:35 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:160,354,208 INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 68223 as yet unmatched pairs. 302 records in RAM. INFO 2026-06-08 08:47:36 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:163,147,335 INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 70865 as yet unmatched pairs. 1345 records in RAM. INFO 2026-06-08 08:47:38 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:171,541,518 INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 71452 as yet unmatched pairs. 226 records in RAM. INFO 2026-06-08 08:47:40 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:180,936,437 INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 72896 as yet unmatched pairs. 45 records in RAM. INFO 2026-06-08 08:47:41 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:186,318,761 INFO 2026-06-08 08:47:41 MarkDuplicates Tracking 75532 as yet unmatched pairs. 974 records in RAM. INFO 2026-06-08 08:47:43 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:201,468,469 INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 76779 as yet unmatched pairs. 725 records in RAM. INFO 2026-06-08 08:47:45 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:202,580,460 INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 78203 as yet unmatched pairs. 415 records in RAM. INFO 2026-06-08 08:47:47 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:204,970,680 INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 79602 as yet unmatched pairs. 167 records in RAM. INFO 2026-06-08 08:47:48 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:207,068,212 INFO 2026-06-08 08:47:48 MarkDuplicates Tracking 81193 as yet unmatched pairs. 137 records in RAM. INFO 2026-06-08 08:47:50 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:214,451,919 INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 82914 as yet unmatched pairs. 110 records in RAM. INFO 2026-06-08 08:47:51 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:225,554,980 INFO 2026-06-08 08:47:51 MarkDuplicates Tracking 84669 as yet unmatched pairs. 294 records in RAM. INFO 2026-06-08 08:47:53 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:228,264,270 INFO 2026-06-08 08:47:53 MarkDuplicates Tracking 86299 as yet unmatched pairs. 95 records in RAM. INFO 2026-06-08 08:47:54 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:234,609,080 INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 88497 as yet unmatched pairs. 119 records in RAM. INFO 2026-06-08 08:47:56 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr1:244,858,751 INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 90828 as yet unmatched pairs. 690 records in RAM. INFO 2026-06-08 08:47:58 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 2s. Last read position: chr2:6,883,407 INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 92122 as yet unmatched pairs. 91766 records in RAM. INFO 2026-06-08 08:48:00 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr2:17,700,333 INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 93845 as yet unmatched pairs. 93478 records in RAM. INFO 2026-06-08 08:48:02 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:24,819,905 INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 95883 as yet unmatched pairs. 95504 records in RAM. INFO 2026-06-08 08:48:05 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 3s. Last read position: chr2:27,083,753 INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 98236 as yet unmatched pairs. 97838 records in RAM. INFO 2026-06-08 08:48:07 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr2:28,408,827 INFO 2026-06-08 08:48:07 MarkDuplicates Tracking 99945 as yet unmatched pairs. 99542 records in RAM. INFO 2026-06-08 08:48:09 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,254 INFO 2026-06-08 08:48:09 MarkDuplicates Tracking 140931 as yet unmatched pairs. 99139 records in RAM. INFO 2026-06-08 08:48:11 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264 INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 495031 as yet unmatched pairs. 88134 records in RAM. INFO 2026-06-08 08:48:13 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406 INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 946628 as yet unmatched pairs. 74281 records in RAM. INFO 2026-06-08 08:48:14 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,423 INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 995265 as yet unmatched pairs. 72926 records in RAM. INFO 2026-06-08 08:48:17 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr2:39,035,305 INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 1008203 as yet unmatched pairs. 71253 records in RAM. INFO 2026-06-08 08:48:20 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr2:43,574,895 INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 1006763 as yet unmatched pairs. 69812 records in RAM. INFO 2026-06-08 08:48:22 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:47,799,284 INFO 2026-06-08 08:48:22 MarkDuplicates Tracking 1004614 as yet unmatched pairs. 67650 records in RAM. INFO 2026-06-08 08:48:23 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:55,049,956 INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 1005926 as yet unmatched pairs. 68957 records in RAM. INFO 2026-06-08 08:48:25 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:63,916,942 INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 1001208 as yet unmatched pairs. 64231 records in RAM. INFO 2026-06-08 08:48:27 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:70,088,059 INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 1000559 as yet unmatched pairs. 63579 records in RAM. INFO 2026-06-08 08:48:28 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:73,901,418 INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 1010015 as yet unmatched pairs. 73023 records in RAM. INFO 2026-06-08 08:48:31 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr2:74,426,412 INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 996328 as yet unmatched pairs. 59328 records in RAM. INFO 2026-06-08 08:48:33 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr2:85,389,817 INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 994556 as yet unmatched pairs. 57549 records in RAM. INFO 2026-06-08 08:48:35 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:88,857,345 INFO 2026-06-08 08:48:35 MarkDuplicates Tracking 993491 as yet unmatched pairs. 56482 records in RAM. INFO 2026-06-08 08:48:37 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr2:97,200,327 INFO 2026-06-08 08:48:37 MarkDuplicates Tracking 991477 as yet unmatched pairs. 54466 records in RAM. INFO 2026-06-08 08:48:38 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:102,718,501 INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 989742 as yet unmatched pairs. 52725 records in RAM. INFO 2026-06-08 08:48:40 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 1s. Last read position: chr2:108,775,717 INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 989136 as yet unmatched pairs. 52119 records in RAM. INFO 2026-06-08 08:48:41 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr2:112,389,595 INFO 2026-06-08 08:48:41 MarkDuplicates Tracking 987713 as yet unmatched pairs. 50674 records in RAM. INFO 2026-06-08 08:48:43 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:126,693,892 INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 986466 as yet unmatched pairs. 49407 records in RAM. INFO 2026-06-08 08:48:45 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr2:130,657,608 INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 984310 as yet unmatched pairs. 47250 records in RAM. INFO 2026-06-08 08:48:46 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:152,663,761 INFO 2026-06-08 08:48:46 MarkDuplicates Tracking 983181 as yet unmatched pairs. 46087 records in RAM. INFO 2026-06-08 08:48:48 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:168,769,534 INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 981301 as yet unmatched pairs. 44184 records in RAM. INFO 2026-06-08 08:48:50 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:176,122,985 INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 979624 as yet unmatched pairs. 42502 records in RAM. INFO 2026-06-08 08:48:52 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:186,669,702 INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 978332 as yet unmatched pairs. 41196 records in RAM. INFO 2026-06-08 08:48:54 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:188,995,079 INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 984597 as yet unmatched pairs. 47457 records in RAM. INFO 2026-06-08 08:48:56 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:189,003,049 INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 982640 as yet unmatched pairs. 45495 records in RAM. INFO 2026-06-08 08:48:57 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:189,053,004 INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 975278 as yet unmatched pairs. 38133 records in RAM. INFO 2026-06-08 08:49:00 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:191,999,102 INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 970392 as yet unmatched pairs. 33240 records in RAM. INFO 2026-06-08 08:49:02 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:202,034,683 INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 968841 as yet unmatched pairs. 31677 records in RAM. INFO 2026-06-08 08:49:04 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:208,350,914 INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 967143 as yet unmatched pairs. 29975 records in RAM. INFO 2026-06-08 08:49:06 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:215,372,293 INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 971060 as yet unmatched pairs. 33891 records in RAM. INFO 2026-06-08 08:49:07 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:215,386,792 INFO 2026-06-08 08:49:07 MarkDuplicates Tracking 968622 as yet unmatched pairs. 31453 records in RAM. INFO 2026-06-08 08:49:09 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:215,408,378 INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 969166 as yet unmatched pairs. 31997 records in RAM. INFO 2026-06-08 08:49:11 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:215,431,872 INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 967016 as yet unmatched pairs. 29845 records in RAM. INFO 2026-06-08 08:49:12 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:217,804,496 INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 960478 as yet unmatched pairs. 23306 records in RAM. INFO 2026-06-08 08:49:14 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr2:217,897,831 INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 959764 as yet unmatched pairs. 22592 records in RAM. INFO 2026-06-08 08:49:16 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:219,055,670 INFO 2026-06-08 08:49:16 MarkDuplicates Tracking 955886 as yet unmatched pairs. 18714 records in RAM. INFO 2026-06-08 08:49:17 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:219,418,616 INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 963387 as yet unmatched pairs. 26215 records in RAM. INFO 2026-06-08 08:49:19 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 1s. Last read position: chr2:219,423,776 INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 963313 as yet unmatched pairs. 26137 records in RAM. INFO 2026-06-08 08:49:21 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:219,543,269 INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 950022 as yet unmatched pairs. 12846 records in RAM. INFO 2026-06-08 08:49:23 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr2:230,417,626 INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 947091 as yet unmatched pairs. 9907 records in RAM. INFO 2026-06-08 08:49:24 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr2:232,790,790 INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 945671 as yet unmatched pairs. 8479 records in RAM. INFO 2026-06-08 08:49:26 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 1s. Last read position: chr2:237,348,643 INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 943947 as yet unmatched pairs. 6746 records in RAM. INFO 2026-06-08 08:49:28 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:237,376,956 INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 944298 as yet unmatched pairs. 7097 records in RAM. INFO 2026-06-08 08:49:29 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:240,568,890 INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 939657 as yet unmatched pairs. 2455 records in RAM. INFO 2026-06-08 08:49:31 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:241,735,203 INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 938778 as yet unmatched pairs. 1573 records in RAM. INFO 2026-06-08 08:49:33 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr3:10,047,899 INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 935631 as yet unmatched pairs. 44225 records in RAM. INFO 2026-06-08 08:49:35 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:14,402,829 INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 934062 as yet unmatched pairs. 42641 records in RAM. INFO 2026-06-08 08:49:36 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:32,449,477 INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 932603 as yet unmatched pairs. 41158 records in RAM. INFO 2026-06-08 08:49:38 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr3:39,143,758 INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 930516 as yet unmatched pairs. 39069 records in RAM. INFO 2026-06-08 08:49:40 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:42,635,271 INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 928784 as yet unmatched pairs. 37336 records in RAM. INFO 2026-06-08 08:49:42 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:47,004,165 INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 926854 as yet unmatched pairs. 35396 records in RAM. INFO 2026-06-08 08:49:43 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:48,412,750 INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 925550 as yet unmatched pairs. 34091 records in RAM. INFO 2026-06-08 08:49:45 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:48,594,537 INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 922853 as yet unmatched pairs. 31382 records in RAM. INFO 2026-06-08 08:49:47 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr3:49,124,398 INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 921473 as yet unmatched pairs. 29976 records in RAM. INFO 2026-06-08 08:49:49 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr3:49,812,433 INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 919701 as yet unmatched pairs. 28200 records in RAM. INFO 2026-06-08 08:49:51 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr3:51,971,569 INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 917426 as yet unmatched pairs. 25919 records in RAM. INFO 2026-06-08 08:49:53 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr3:52,515,481 INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 916414 as yet unmatched pairs. 24903 records in RAM. INFO 2026-06-08 08:49:55 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:57,916,999 INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 914052 as yet unmatched pairs. 22533 records in RAM. INFO 2026-06-08 08:49:57 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 1s. Last read position: chr3:69,039,569 INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 911943 as yet unmatched pairs. 20421 records in RAM. INFO 2026-06-08 08:49:58 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:100,167,796 INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 910359 as yet unmatched pairs. 18821 records in RAM. INFO 2026-06-08 08:50:00 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:113,745,967 INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 908908 as yet unmatched pairs. 17368 records in RAM. INFO 2026-06-08 08:50:02 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:123,291,170 INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 907163 as yet unmatched pairs. 15619 records in RAM. INFO 2026-06-08 08:50:03 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:124,859,259 INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 905837 as yet unmatched pairs. 14286 records in RAM. INFO 2026-06-08 08:50:05 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:129,171,119 INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 904963 as yet unmatched pairs. 13410 records in RAM. INFO 2026-06-08 08:50:07 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:136,464,973 INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 901979 as yet unmatched pairs. 10417 records in RAM. INFO 2026-06-08 08:50:09 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr3:150,410,865 INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 900346 as yet unmatched pairs. 8777 records in RAM. INFO 2026-06-08 08:50:10 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr3:171,713,900 INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 898637 as yet unmatched pairs. 7064 records in RAM. INFO 2026-06-08 08:50:12 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr3:184,315,802 INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 898182 as yet unmatched pairs. 6592 records in RAM. INFO 2026-06-08 08:50:14 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:53s. Time for last 1,000,000: 1s. Last read position: chr3:188,406,259 INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 896652 as yet unmatched pairs. 5060 records in RAM. INFO 2026-06-08 08:50:15 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr3:195,333,114 INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 893854 as yet unmatched pairs. 2262 records in RAM. INFO 2026-06-08 08:50:17 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr3:195,867,973 INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 893055 as yet unmatched pairs. 1462 records in RAM. INFO 2026-06-08 08:50:19 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr4:955,456 INFO 2026-06-08 08:50:19 MarkDuplicates Tracking 891076 as yet unmatched pairs. 25835 records in RAM. INFO 2026-06-08 08:50:20 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr4:1,939,743 INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 889031 as yet unmatched pairs. 23774 records in RAM. INFO 2026-06-08 08:50:22 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr4:6,295,154 INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 887116 as yet unmatched pairs. 21839 records in RAM. INFO 2026-06-08 08:50:24 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:11,399,911 INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 885112 as yet unmatched pairs. 19835 records in RAM. INFO 2026-06-08 08:50:26 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr4:38,115,821 INFO 2026-06-08 08:50:26 MarkDuplicates Tracking 883313 as yet unmatched pairs. 18032 records in RAM. INFO 2026-06-08 08:50:29 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 3s. Last read position: chr4:54,229,393 INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 882174 as yet unmatched pairs. 16886 records in RAM. INFO 2026-06-08 08:50:31 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr4:57,110,250 INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 879647 as yet unmatched pairs. 14357 records in RAM. INFO 2026-06-08 08:50:33 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr4:77,157,412 INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 877867 as yet unmatched pairs. 12566 records in RAM. INFO 2026-06-08 08:50:35 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr4:88,007,672 INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 876248 as yet unmatched pairs. 10945 records in RAM. INFO 2026-06-08 08:50:36 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr4:108,620,590 INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 875068 as yet unmatched pairs. 9753 records in RAM. INFO 2026-06-08 08:50:38 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr4:119,031,417 INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 878836 as yet unmatched pairs. 13521 records in RAM. INFO 2026-06-08 08:50:40 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr4:139,301,750 INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 871642 as yet unmatched pairs. 6321 records in RAM. INFO 2026-06-08 08:50:41 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr4:151,566,250 INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 870012 as yet unmatched pairs. 4682 records in RAM. INFO 2026-06-08 08:50:43 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:168,903,780 INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 868748 as yet unmatched pairs. 3417 records in RAM. INFO 2026-06-08 08:50:45 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:186,603,393 INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 867601 as yet unmatched pairs. 2269 records in RAM. INFO 2026-06-08 08:50:46 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr5:633,791 INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 864922 as yet unmatched pairs. 40434 records in RAM. INFO 2026-06-08 08:50:49 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr5:14,359,381 INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 863656 as yet unmatched pairs. 39164 records in RAM. INFO 2026-06-08 08:50:51 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr5:16,681,982 INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 861665 as yet unmatched pairs. 37172 records in RAM. INFO 2026-06-08 08:50:53 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:40,798,052 INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 859965 as yet unmatched pairs. 35453 records in RAM. INFO 2026-06-08 08:50:55 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr5:62,537,215 INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 858330 as yet unmatched pairs. 33798 records in RAM. INFO 2026-06-08 08:50:56 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:73,502,507 INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 857628 as yet unmatched pairs. 33096 records in RAM. INFO 2026-06-08 08:50:58 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 1s. Last read position: chr5:82,276,198 INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 859099 as yet unmatched pairs. 34553 records in RAM. INFO 2026-06-08 08:50:59 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr5:98,774,091 INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 853683 as yet unmatched pairs. 29126 records in RAM. INFO 2026-06-08 08:51:01 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr5:126,552,000 INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 852082 as yet unmatched pairs. 27523 records in RAM. INFO 2026-06-08 08:51:03 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr5:133,959,494 INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 850050 as yet unmatched pairs. 25490 records in RAM. INFO 2026-06-08 08:51:05 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr5:136,153,684 INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 848552 as yet unmatched pairs. 23989 records in RAM. INFO 2026-06-08 08:51:08 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 3s. Last read position: chr5:139,561,617 INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 846899 as yet unmatched pairs. 22335 records in RAM. INFO 2026-06-08 08:51:10 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:141,361,505 INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 845139 as yet unmatched pairs. 20537 records in RAM. INFO 2026-06-08 08:51:12 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:146,459,011 INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 843510 as yet unmatched pairs. 18908 records in RAM. INFO 2026-06-08 08:51:13 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:150,129,738 INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 843142 as yet unmatched pairs. 18531 records in RAM. INFO 2026-06-08 08:51:15 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr5:150,403,154 INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 852342 as yet unmatched pairs. 27730 records in RAM. INFO 2026-06-08 08:51:17 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,213 INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 844854 as yet unmatched pairs. 20242 records in RAM. INFO 2026-06-08 08:51:18 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:151,484,718 INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 836455 as yet unmatched pairs. 11843 records in RAM. INFO 2026-06-08 08:51:20 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr5:160,093,480 INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 834698 as yet unmatched pairs. 10068 records in RAM. INFO 2026-06-08 08:51:22 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:171,392,802 INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 839388 as yet unmatched pairs. 14758 records in RAM. INFO 2026-06-08 08:51:23 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:176,882,098 INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 831457 as yet unmatched pairs. 6823 records in RAM. INFO 2026-06-08 08:51:25 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr5:177,592,574 INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 830164 as yet unmatched pairs. 5524 records in RAM. INFO 2026-06-08 08:51:27 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:179,798,556 INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 827919 as yet unmatched pairs. 3275 records in RAM. INFO 2026-06-08 08:51:28 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr5:179,870,482 INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 826196 as yet unmatched pairs. 1540 records in RAM. INFO 2026-06-08 08:51:30 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr6:3,153,970 INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 824118 as yet unmatched pairs. 44283 records in RAM. INFO 2026-06-08 08:51:32 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr6:7,891,642 INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 822900 as yet unmatched pairs. 43064 records in RAM. INFO 2026-06-08 08:51:34 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr6:25,023,906 INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 820649 as yet unmatched pairs. 40808 records in RAM. INFO 2026-06-08 08:51:35 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr6:27,808,214 INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 819425 as yet unmatched pairs. 39580 records in RAM. INFO 2026-06-08 08:51:38 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 2s. Last read position: chr6:29,944,291 INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 823165 as yet unmatched pairs. 43320 records in RAM. INFO 2026-06-08 08:51:40 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr6:30,730,477 INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 816253 as yet unmatched pairs. 36399 records in RAM. INFO 2026-06-08 08:51:42 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 1s. Last read position: chr6:31,356,648 INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 815218 as yet unmatched pairs. 35363 records in RAM. INFO 2026-06-08 08:51:44 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr6:31,691,613 INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 812337 as yet unmatched pairs. 32480 records in RAM. INFO 2026-06-08 08:51:45 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:31,869,164 INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 811065 as yet unmatched pairs. 31208 records in RAM. INFO 2026-06-08 08:51:47 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr6:32,024,949 INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 812459 as yet unmatched pairs. 32602 records in RAM. INFO 2026-06-08 08:51:48 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:32,191,804 INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 808059 as yet unmatched pairs. 28198 records in RAM. INFO 2026-06-08 08:51:50 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:33,069,214 INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 806398 as yet unmatched pairs. 26523 records in RAM. INFO 2026-06-08 08:51:52 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:33,415,939 INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 805635 as yet unmatched pairs. 25758 records in RAM. INFO 2026-06-08 08:51:53 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr6:36,102,571 INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 802559 as yet unmatched pairs. 22682 records in RAM. INFO 2026-06-08 08:51:55 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 1s. Last read position: chr6:42,211,800 INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 800672 as yet unmatched pairs. 20794 records in RAM. INFO 2026-06-08 08:51:57 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:43,600,985 INFO 2026-06-08 08:51:57 MarkDuplicates Tracking 798700 as yet unmatched pairs. 18815 records in RAM. INFO 2026-06-08 08:51:59 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr6:53,544,554 INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 797158 as yet unmatched pairs. 17245 records in RAM. INFO 2026-06-08 08:52:00 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr6:75,090,190 INFO 2026-06-08 08:52:00 MarkDuplicates Tracking 796297 as yet unmatched pairs. 16366 records in RAM. INFO 2026-06-08 08:52:02 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr6:87,175,761 INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 794103 as yet unmatched pairs. 14169 records in RAM. INFO 2026-06-08 08:52:04 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr6:108,004,878 INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 792301 as yet unmatched pairs. 12362 records in RAM. INFO 2026-06-08 08:52:06 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 2s. Last read position: chr6:116,279,477 INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 790653 as yet unmatched pairs. 10705 records in RAM. INFO 2026-06-08 08:52:08 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 2s. Last read position: chr6:132,322,719 INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 788936 as yet unmatched pairs. 8987 records in RAM. INFO 2026-06-08 08:52:10 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 1s. Last read position: chr6:143,428,496 INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 787293 as yet unmatched pairs. 7340 records in RAM. INFO 2026-06-08 08:52:11 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:151,350,533 INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 786028 as yet unmatched pairs. 6075 records in RAM. INFO 2026-06-08 08:52:13 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr6:158,429,794 INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 784154 as yet unmatched pairs. 4190 records in RAM. INFO 2026-06-08 08:52:15 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr6:159,692,795 INFO 2026-06-08 08:52:15 MarkDuplicates Tracking 782814 as yet unmatched pairs. 2848 records in RAM. INFO 2026-06-08 08:52:16 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr6:169,234,779 INFO 2026-06-08 08:52:16 MarkDuplicates Tracking 781081 as yet unmatched pairs. 1113 records in RAM. INFO 2026-06-08 08:52:18 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr7:1,476,815 INFO 2026-06-08 08:52:18 MarkDuplicates Tracking 779018 as yet unmatched pairs. 61533 records in RAM. INFO 2026-06-08 08:52:20 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:4,682,675 INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 776200 as yet unmatched pairs. 58705 records in RAM. INFO 2026-06-08 08:52:22 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:5,388,742 INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 773922 as yet unmatched pairs. 56426 records in RAM. INFO 2026-06-08 08:52:24 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:5,528,345 INFO 2026-06-08 08:52:24 MarkDuplicates Tracking 789213 as yet unmatched pairs. 71714 records in RAM. INFO 2026-06-08 08:52:25 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,358 INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 789639 as yet unmatched pairs. 72140 records in RAM. INFO 2026-06-08 08:52:27 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:8,143,963 INFO 2026-06-08 08:52:27 MarkDuplicates Tracking 768164 as yet unmatched pairs. 50661 records in RAM. INFO 2026-06-08 08:52:29 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr7:26,739,894 INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 766672 as yet unmatched pairs. 49168 records in RAM. INFO 2026-06-08 08:52:30 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:38,758,394 INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 764863 as yet unmatched pairs. 47356 records in RAM. INFO 2026-06-08 08:52:32 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:44,115,788 INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 763603 as yet unmatched pairs. 46087 records in RAM. INFO 2026-06-08 08:52:34 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:47,346,272 INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 761493 as yet unmatched pairs. 43976 records in RAM. INFO 2026-06-08 08:52:36 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr7:65,676,888 INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 759455 as yet unmatched pairs. 41935 records in RAM. INFO 2026-06-08 08:52:38 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:73,297,242 INFO 2026-06-08 08:52:38 MarkDuplicates Tracking 758317 as yet unmatched pairs. 40792 records in RAM. INFO 2026-06-08 08:52:40 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 2s. Last read position: chr7:74,059,927 INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 759528 as yet unmatched pairs. 41999 records in RAM. INFO 2026-06-08 08:52:41 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr7:75,337,195 INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 754668 as yet unmatched pairs. 37136 records in RAM. INFO 2026-06-08 08:52:43 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,901 INFO 2026-06-08 08:52:43 MarkDuplicates Tracking 761195 as yet unmatched pairs. 43660 records in RAM. INFO 2026-06-08 08:52:45 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr7:77,638,704 INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 751590 as yet unmatched pairs. 34051 records in RAM. INFO 2026-06-08 08:52:46 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr7:93,215,515 INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 750048 as yet unmatched pairs. 32506 records in RAM. INFO 2026-06-08 08:52:48 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:94,410,242 INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 753566 as yet unmatched pairs. 36018 records in RAM. INFO 2026-06-08 08:52:50 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr7:94,421,035 INFO 2026-06-08 08:52:50 MarkDuplicates Tracking 752898 as yet unmatched pairs. 35350 records in RAM. INFO 2026-06-08 08:52:52 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr7:98,243,492 INFO 2026-06-08 08:52:52 MarkDuplicates Tracking 744889 as yet unmatched pairs. 27336 records in RAM. INFO 2026-06-08 08:52:54 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr7:100,033,752 INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 743251 as yet unmatched pairs. 25684 records in RAM. INFO 2026-06-08 08:52:55 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:100,676,174 INFO 2026-06-08 08:52:55 MarkDuplicates Tracking 741381 as yet unmatched pairs. 23813 records in RAM. INFO 2026-06-08 08:52:57 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,904 INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 739736 as yet unmatched pairs. 22168 records in RAM. INFO 2026-06-08 08:52:58 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,690 INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 740145 as yet unmatched pairs. 22577 records in RAM. INFO 2026-06-08 08:53:00 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,802 INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 741086 as yet unmatched pairs. 23517 records in RAM. INFO 2026-06-08 08:53:01 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,913 INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 739149 as yet unmatched pairs. 21580 records in RAM. INFO 2026-06-08 08:53:03 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:101,160,556 INFO 2026-06-08 08:53:03 MarkDuplicates Tracking 737231 as yet unmatched pairs. 19662 records in RAM. INFO 2026-06-08 08:53:05 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:102,659,950 INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 735314 as yet unmatched pairs. 17741 records in RAM. INFO 2026-06-08 08:53:07 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:112,462,329 INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 733676 as yet unmatched pairs. 16102 records in RAM. INFO 2026-06-08 08:53:08 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:127,698,928 INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 733579 as yet unmatched pairs. 16004 records in RAM. INFO 2026-06-08 08:53:10 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr7:128,758,926 INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 730588 as yet unmatched pairs. 13013 records in RAM. INFO 2026-06-08 08:53:12 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:130,130,640 INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 728612 as yet unmatched pairs. 11030 records in RAM. INFO 2026-06-08 08:53:13 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:137,882,579 INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 728483 as yet unmatched pairs. 10891 records in RAM. INFO 2026-06-08 08:53:15 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr7:140,800,381 INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 725398 as yet unmatched pairs. 7787 records in RAM. INFO 2026-06-08 08:53:17 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:144,187,939 INFO 2026-06-08 08:53:17 MarkDuplicates Tracking 723580 as yet unmatched pairs. 5962 records in RAM. INFO 2026-06-08 08:53:18 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:150,372,829 INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 722597 as yet unmatched pairs. 4976 records in RAM. INFO 2026-06-08 08:53:20 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr7:151,141,931 INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 719838 as yet unmatched pairs. 2214 records in RAM. INFO 2026-06-08 08:53:22 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:158,739,032 INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 718287 as yet unmatched pairs. 663 records in RAM. INFO 2026-06-08 08:53:24 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 2s. Last read position: chr8:17,247,201 INFO 2026-06-08 08:53:24 MarkDuplicates Tracking 716470 as yet unmatched pairs. 39741 records in RAM. INFO 2026-06-08 08:53:25 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr8:22,618,652 INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 715996 as yet unmatched pairs. 39262 records in RAM. INFO 2026-06-08 08:53:27 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr8:29,147,056 INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 712527 as yet unmatched pairs. 35793 records in RAM. INFO 2026-06-08 08:53:29 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr8:37,872,098 INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 710796 as yet unmatched pairs. 34061 records in RAM. INFO 2026-06-08 08:53:30 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr8:38,827,270 INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 711560 as yet unmatched pairs. 34825 records in RAM. INFO 2026-06-08 08:53:32 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr8:47,776,963 INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 707410 as yet unmatched pairs. 30657 records in RAM. INFO 2026-06-08 08:53:35 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 2s. Last read position: chr8:61,502,387 INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 705288 as yet unmatched pairs. 28531 records in RAM. INFO 2026-06-08 08:53:37 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 2s. Last read position: chr8:73,292,364 INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 705074 as yet unmatched pairs. 28313 records in RAM. INFO 2026-06-08 08:53:39 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr8:94,506,533 INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 702370 as yet unmatched pairs. 25602 records in RAM. INFO 2026-06-08 08:53:40 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr8:100,715,504 INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 702823 as yet unmatched pairs. 26044 records in RAM. INFO 2026-06-08 08:53:42 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr8:116,644,976 INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 699295 as yet unmatched pairs. 22515 records in RAM. INFO 2026-06-08 08:53:44 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr8:127,736,430 INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 698887 as yet unmatched pairs. 22107 records in RAM. INFO 2026-06-08 08:53:46 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr8:141,166,376 INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 695618 as yet unmatched pairs. 18833 records in RAM. INFO 2026-06-08 08:53:48 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr8:143,613,236 INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 693577 as yet unmatched pairs. 16786 records in RAM. INFO 2026-06-08 08:54:53 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 64s. Last read position: chr8:143,858,397 INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 691718 as yet unmatched pairs. 14927 records in RAM. INFO 2026-06-08 08:54:54 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,165 INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 692572 as yet unmatched pairs. 15781 records in RAM. INFO 2026-06-08 08:54:55 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,612 INFO 2026-06-08 08:54:55 MarkDuplicates Tracking 690709 as yet unmatched pairs. 13918 records in RAM. INFO 2026-06-08 08:54:57 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,116 INFO 2026-06-08 08:54:57 MarkDuplicates Tracking 693583 as yet unmatched pairs. 16792 records in RAM. INFO 2026-06-08 08:54:58 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,828 INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 690130 as yet unmatched pairs. 13337 records in RAM. INFO 2026-06-08 08:54:59 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,423 INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 688768 as yet unmatched pairs. 11975 records in RAM. INFO 2026-06-08 08:55:00 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr8:143,918,946 INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 686656 as yet unmatched pairs. 9858 records in RAM. INFO 2026-06-08 08:55:02 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr8:143,925,451 INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 684558 as yet unmatched pairs. 7756 records in RAM. INFO 2026-06-08 08:55:04 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr8:144,080,111 INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 681450 as yet unmatched pairs. 4648 records in RAM. INFO 2026-06-08 08:55:05 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr8:144,396,400 INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 679131 as yet unmatched pairs. 2329 records in RAM. INFO 2026-06-08 08:55:07 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 2s. Last read position: chr9:18,431 INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 676861 as yet unmatched pairs. 44834 records in RAM. INFO 2026-06-08 08:55:09 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr9:14,801,661 INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 675294 as yet unmatched pairs. 43247 records in RAM. INFO 2026-06-08 08:55:11 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr9:33,466,201 INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 673528 as yet unmatched pairs. 41468 records in RAM. INFO 2026-06-08 08:55:12 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr9:35,660,573 INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 672043 as yet unmatched pairs. 39981 records in RAM. INFO 2026-06-08 08:55:14 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr9:35,717,363 INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 670703 as yet unmatched pairs. 38641 records in RAM. INFO 2026-06-08 08:55:16 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr9:61,379,928 INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 668153 as yet unmatched pairs. 36086 records in RAM. INFO 2026-06-08 08:55:17 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 1s. Last read position: chr9:76,706,941 INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 667255 as yet unmatched pairs. 35175 records in RAM. INFO 2026-06-08 08:55:19 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr9:89,001,307 INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 665138 as yet unmatched pairs. 33041 records in RAM. INFO 2026-06-08 08:55:21 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr9:93,527,228 INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 663795 as yet unmatched pairs. 31698 records in RAM. INFO 2026-06-08 08:55:22 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr9:99,036,194 INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 662500 as yet unmatched pairs. 30395 records in RAM. INFO 2026-06-08 08:55:25 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 2s. Last read position: chr9:110,201,078 INFO 2026-06-08 08:55:25 MarkDuplicates Tracking 660057 as yet unmatched pairs. 27934 records in RAM. INFO 2026-06-08 08:55:26 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr9:114,350,953 INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 658312 as yet unmatched pairs. 26178 records in RAM. INFO 2026-06-08 08:55:28 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:115,086,437 INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 658784 as yet unmatched pairs. 26650 records in RAM. INFO 2026-06-08 08:55:30 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr9:121,757,015 INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 654850 as yet unmatched pairs. 22712 records in RAM. INFO 2026-06-08 08:55:31 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 1s. Last read position: chr9:127,091,834 INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 653419 as yet unmatched pairs. 21277 records in RAM. INFO 2026-06-08 08:55:33 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:128,176,452 INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 650981 as yet unmatched pairs. 18838 records in RAM. INFO 2026-06-08 08:55:34 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:128,824,158 INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 649149 as yet unmatched pairs. 17006 records in RAM. INFO 2026-06-08 08:55:36 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr9:130,369,629 INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 647588 as yet unmatched pairs. 15438 records in RAM. INFO 2026-06-08 08:55:38 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr9:131,150,338 INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 645369 as yet unmatched pairs. 13209 records in RAM. INFO 2026-06-08 08:55:40 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr9:133,071,232 INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 644234 as yet unmatched pairs. 12074 records in RAM. INFO 2026-06-08 08:55:41 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 1s. Last read position: chr9:134,699,931 INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 642296 as yet unmatched pairs. 10134 records in RAM. INFO 2026-06-08 08:55:43 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 1s. Last read position: chr9:134,818,848 INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 641930 as yet unmatched pairs. 9768 records in RAM. INFO 2026-06-08 08:55:44 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr9:136,497,514 INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 638101 as yet unmatched pairs. 5937 records in RAM. INFO 2026-06-08 08:55:46 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:136,981,607 INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 635444 as yet unmatched pairs. 3277 records in RAM. INFO 2026-06-08 08:55:47 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr9:137,366,532 INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 633265 as yet unmatched pairs. 1098 records in RAM. INFO 2026-06-08 08:55:49 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr10:5,685,003 INFO 2026-06-08 08:55:49 MarkDuplicates Tracking 631234 as yet unmatched pairs. 29297 records in RAM. INFO 2026-06-08 08:55:51 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr10:17,229,893 INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 630130 as yet unmatched pairs. 28186 records in RAM. INFO 2026-06-08 08:55:52 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr10:29,490,951 INFO 2026-06-08 08:55:52 MarkDuplicates Tracking 627912 as yet unmatched pairs. 25950 records in RAM. INFO 2026-06-08 08:55:54 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr10:32,271,681 INFO 2026-06-08 08:55:54 MarkDuplicates Tracking 626570 as yet unmatched pairs. 24607 records in RAM. INFO 2026-06-08 08:55:56 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr10:45,752,601 INFO 2026-06-08 08:55:56 MarkDuplicates Tracking 625032 as yet unmatched pairs. 23050 records in RAM. INFO 2026-06-08 08:55:57 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr10:50,009,430 INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 624105 as yet unmatched pairs. 22123 records in RAM. INFO 2026-06-08 08:55:59 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr10:68,956,304 INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 622216 as yet unmatched pairs. 20224 records in RAM. INFO 2026-06-08 08:56:01 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr10:72,932,346 INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 620104 as yet unmatched pairs. 18107 records in RAM. INFO 2026-06-08 08:56:02 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:76,887,335 INFO 2026-06-08 08:56:02 MarkDuplicates Tracking 618786 as yet unmatched pairs. 16789 records in RAM. INFO 2026-06-08 08:56:04 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:84,142,717 INFO 2026-06-08 08:56:04 MarkDuplicates Tracking 616778 as yet unmatched pairs. 14763 records in RAM. INFO 2026-06-08 08:56:05 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:89,338,950 INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 615224 as yet unmatched pairs. 13198 records in RAM. INFO 2026-06-08 08:56:07 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:95,867,954 INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 613564 as yet unmatched pairs. 11528 records in RAM. INFO 2026-06-08 08:56:09 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:100,347,486 INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 612472 as yet unmatched pairs. 10435 records in RAM. INFO 2026-06-08 08:56:11 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr10:102,398,210 INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 609901 as yet unmatched pairs. 7859 records in RAM. INFO 2026-06-08 08:56:12 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:104,254,945 INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 608469 as yet unmatched pairs. 6426 records in RAM. INFO 2026-06-08 08:56:14 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:118,707,559 INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 606443 as yet unmatched pairs. 4397 records in RAM. INFO 2026-06-08 08:56:16 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:122,579,883 INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 604811 as yet unmatched pairs. 2759 records in RAM. INFO 2026-06-08 08:56:17 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr10:130,160,825 INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 603337 as yet unmatched pairs. 1281 records in RAM. INFO 2026-06-08 08:56:19 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr11:314,272 INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 604420 as yet unmatched pairs. 66220 records in RAM. INFO 2026-06-08 08:56:21 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:498,571 INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 599672 as yet unmatched pairs. 61464 records in RAM. INFO 2026-06-08 08:56:23 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:837,962 INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 599332 as yet unmatched pairs. 61115 records in RAM. INFO 2026-06-08 08:56:24 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,669 INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 595639 as yet unmatched pairs. 57422 records in RAM. INFO 2026-06-08 08:56:25 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr11:1,747,959 INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 594420 as yet unmatched pairs. 56203 records in RAM. INFO 2026-06-08 08:56:27 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr11:3,359,342 INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 592305 as yet unmatched pairs. 54088 records in RAM. INFO 2026-06-08 08:56:29 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr11:6,623,137 INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 590804 as yet unmatched pairs. 52585 records in RAM. INFO 2026-06-08 08:56:30 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr11:10,628,776 INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 589017 as yet unmatched pairs. 50797 records in RAM. INFO 2026-06-08 08:56:32 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr11:17,074,421 INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 587519 as yet unmatched pairs. 49292 records in RAM. INFO 2026-06-08 08:56:34 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr11:33,543,186 INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 585364 as yet unmatched pairs. 47134 records in RAM. INFO 2026-06-08 08:56:35 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr11:45,965,522 INFO 2026-06-08 08:56:35 MarkDuplicates Tracking 583617 as yet unmatched pairs. 45387 records in RAM. INFO 2026-06-08 08:56:37 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr11:47,290,706 INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 581736 as yet unmatched pairs. 43506 records in RAM. INFO 2026-06-08 08:56:39 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr11:57,745,042 INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 580044 as yet unmatched pairs. 41797 records in RAM. INFO 2026-06-08 08:56:41 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr11:61,332,914 INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 578645 as yet unmatched pairs. 40394 records in RAM. INFO 2026-06-08 08:56:42 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr11:62,521,601 INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 577516 as yet unmatched pairs. 39263 records in RAM. INFO 2026-06-08 08:56:44 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr11:62,531,991 INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 576332 as yet unmatched pairs. 38079 records in RAM. INFO 2026-06-08 08:56:46 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:62,717,043 INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 573813 as yet unmatched pairs. 35560 records in RAM. INFO 2026-06-08 08:56:47 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 1s. Last read position: chr11:64,242,359 INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 571441 as yet unmatched pairs. 33188 records in RAM. INFO 2026-06-08 08:56:49 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:64,894,859 INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 569075 as yet unmatched pairs. 30821 records in RAM. INFO 2026-06-08 08:56:50 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:65,539,751 INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 567622 as yet unmatched pairs. 29348 records in RAM. INFO 2026-06-08 08:56:52 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,592 INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 566049 as yet unmatched pairs. 27775 records in RAM. INFO 2026-06-08 08:56:54 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr11:66,234,186 INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 563351 as yet unmatched pairs. 25077 records in RAM. INFO 2026-06-08 08:56:55 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr11:67,279,676 INFO 2026-06-08 08:56:55 MarkDuplicates Tracking 560931 as yet unmatched pairs. 22655 records in RAM. INFO 2026-06-08 08:56:57 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:68,021,684 INFO 2026-06-08 08:56:57 MarkDuplicates Tracking 558529 as yet unmatched pairs. 20253 records in RAM. INFO 2026-06-08 08:56:59 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:69,643,910 INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 558929 as yet unmatched pairs. 20641 records in RAM. INFO 2026-06-08 08:57:01 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr11:72,110,147 INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 554533 as yet unmatched pairs. 16245 records in RAM. INFO 2026-06-08 08:57:03 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:74,696,446 INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 552653 as yet unmatched pairs. 14361 records in RAM. INFO 2026-06-08 08:57:04 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr11:77,667,440 INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 550664 as yet unmatched pairs. 12371 records in RAM. INFO 2026-06-08 08:57:06 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr11:95,817,888 INFO 2026-06-08 08:57:06 MarkDuplicates Tracking 549003 as yet unmatched pairs. 10710 records in RAM. INFO 2026-06-08 08:57:07 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:111,737,487 INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 547271 as yet unmatched pairs. 8977 records in RAM. INFO 2026-06-08 08:57:09 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr11:117,206,136 INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 546541 as yet unmatched pairs. 8247 records in RAM. INFO 2026-06-08 08:57:10 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr11:118,896,901 INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 544114 as yet unmatched pairs. 5820 records in RAM. INFO 2026-06-08 08:57:12 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:120,211,399 INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 542326 as yet unmatched pairs. 4032 records in RAM. INFO 2026-06-08 08:57:14 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr11:126,263,864 INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 540188 as yet unmatched pairs. 1894 records in RAM. INFO 2026-06-08 08:57:15 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:134,161,785 INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 538472 as yet unmatched pairs. 175 records in RAM. INFO 2026-06-08 08:57:17 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 2s. Last read position: chr12:2,859,413 INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 536913 as yet unmatched pairs. 53910 records in RAM. INFO 2026-06-08 08:57:19 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr12:6,348,210 INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 534965 as yet unmatched pairs. 51962 records in RAM. INFO 2026-06-08 08:57:21 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr12:6,770,181 INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 533999 as yet unmatched pairs. 50996 records in RAM. INFO 2026-06-08 08:57:22 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr12:7,080,862 INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 532135 as yet unmatched pairs. 49129 records in RAM. INFO 2026-06-08 08:57:24 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr12:9,288,285 INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 529542 as yet unmatched pairs. 46536 records in RAM. INFO 2026-06-08 08:57:25 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr12:13,211,534 INFO 2026-06-08 08:57:25 MarkDuplicates Tracking 528074 as yet unmatched pairs. 45062 records in RAM. INFO 2026-06-08 08:57:27 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr12:26,122,094 INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 526522 as yet unmatched pairs. 43502 records in RAM. INFO 2026-06-08 08:57:28 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr12:45,216,303 INFO 2026-06-08 08:57:28 MarkDuplicates Tracking 525115 as yet unmatched pairs. 42095 records in RAM. INFO 2026-06-08 08:57:30 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr12:48,939,031 INFO 2026-06-08 08:57:30 MarkDuplicates Tracking 523640 as yet unmatched pairs. 40614 records in RAM. INFO 2026-06-08 08:57:32 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr12:49,129,516 INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 522773 as yet unmatched pairs. 39747 records in RAM. INFO 2026-06-08 08:57:34 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr12:50,195,856 INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 520385 as yet unmatched pairs. 37359 records in RAM. INFO 2026-06-08 08:57:36 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr12:52,898,805 INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 520485 as yet unmatched pairs. 37455 records in RAM. INFO 2026-06-08 08:57:38 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr12:53,059,173 INFO 2026-06-08 08:57:38 MarkDuplicates Tracking 516495 as yet unmatched pairs. 33461 records in RAM. INFO 2026-06-08 08:57:39 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr12:53,665,401 INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 516411 as yet unmatched pairs. 33376 records in RAM. INFO 2026-06-08 08:57:41 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr12:55,683,980 INFO 2026-06-08 08:57:41 MarkDuplicates Tracking 513283 as yet unmatched pairs. 30242 records in RAM. INFO 2026-06-08 08:57:42 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr12:56,131,248 INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 511614 as yet unmatched pairs. 28573 records in RAM. INFO 2026-06-08 08:57:44 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr12:56,344,094 INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 509571 as yet unmatched pairs. 26527 records in RAM. INFO 2026-06-08 08:57:46 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr12:57,093,406 INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 508333 as yet unmatched pairs. 25289 records in RAM. INFO 2026-06-08 08:57:47 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr12:57,144,979 INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 506682 as yet unmatched pairs. 23632 records in RAM. INFO 2026-06-08 08:57:49 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr12:57,231,524 INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 504258 as yet unmatched pairs. 21207 records in RAM. INFO 2026-06-08 08:57:50 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr12:57,801,152 INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 502426 as yet unmatched pairs. 19375 records in RAM. INFO 2026-06-08 08:57:52 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr12:69,259,462 INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 500990 as yet unmatched pairs. 17938 records in RAM. INFO 2026-06-08 08:57:53 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr12:89,350,792 INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 499586 as yet unmatched pairs. 16528 records in RAM. INFO 2026-06-08 08:57:55 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr12:98,614,320 INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 497744 as yet unmatched pairs. 14685 records in RAM. INFO 2026-06-08 08:57:57 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr12:108,547,903 INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 496332 as yet unmatched pairs. 13269 records in RAM. INFO 2026-06-08 08:57:59 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr12:111,485,713 INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 494505 as yet unmatched pairs. 11441 records in RAM. INFO 2026-06-08 08:58:00 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr12:113,273,267 INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 492962 as yet unmatched pairs. 9896 records in RAM. INFO 2026-06-08 08:58:02 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr12:120,197,354 INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 492255 as yet unmatched pairs. 9188 records in RAM. INFO 2026-06-08 08:58:04 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr12:121,822,943 INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 489459 as yet unmatched pairs. 6382 records in RAM. INFO 2026-06-08 08:58:06 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:123,937,330 INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 487425 as yet unmatched pairs. 4340 records in RAM. INFO 2026-06-08 08:58:07 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr12:130,875,757 INFO 2026-06-08 08:58:07 MarkDuplicates Tracking 487100 as yet unmatched pairs. 4011 records in RAM. INFO 2026-06-08 08:58:09 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr12:132,844,082 INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 483552 as yet unmatched pairs. 460 records in RAM. INFO 2026-06-08 08:58:10 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr13:24,492,482 INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 481841 as yet unmatched pairs. 15892 records in RAM. INFO 2026-06-08 08:58:12 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr13:35,850,740 INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 480093 as yet unmatched pairs. 14142 records in RAM. INFO 2026-06-08 08:58:13 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr13:45,340,713 INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 479833 as yet unmatched pairs. 13880 records in RAM. INFO 2026-06-08 08:58:15 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr13:53,028,850 INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 486592 as yet unmatched pairs. 20637 records in RAM. INFO 2026-06-08 08:58:17 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr13:72,908,548 INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 475414 as yet unmatched pairs. 9458 records in RAM. INFO 2026-06-08 08:58:18 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr13:98,393,667 INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 473811 as yet unmatched pairs. 7852 records in RAM. INFO 2026-06-08 08:58:20 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr13:110,172,730 INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 474535 as yet unmatched pairs. 8575 records in RAM. INFO 2026-06-08 08:58:21 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr13:110,428,536 INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 471654 as yet unmatched pairs. 5694 records in RAM. INFO 2026-06-08 08:58:23 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr13:110,523,893 INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 468001 as yet unmatched pairs. 2040 records in RAM. INFO 2026-06-08 08:58:25 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr14:20,373,392 INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 466377 as yet unmatched pairs. 30050 records in RAM. INFO 2026-06-08 08:58:26 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr14:22,770,804 INFO 2026-06-08 08:58:26 MarkDuplicates Tracking 464648 as yet unmatched pairs. 28320 records in RAM. INFO 2026-06-08 08:58:28 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr14:23,559,942 INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 462469 as yet unmatched pairs. 26141 records in RAM. INFO 2026-06-08 08:58:30 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr14:24,370,293 INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 460756 as yet unmatched pairs. 24428 records in RAM. INFO 2026-06-08 08:58:32 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr14:39,108,413 INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 458670 as yet unmatched pairs. 22341 records in RAM. INFO 2026-06-08 08:58:34 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr14:52,919,256 INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 457708 as yet unmatched pairs. 21343 records in RAM. INFO 2026-06-08 08:58:35 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr14:61,695,689 INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 455701 as yet unmatched pairs. 19335 records in RAM. INFO 2026-06-08 08:58:37 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr14:67,769,725 INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 453957 as yet unmatched pairs. 17591 records in RAM. INFO 2026-06-08 08:58:39 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr14:70,523,237 INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 452144 as yet unmatched pairs. 15778 records in RAM. INFO 2026-06-08 08:58:40 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr14:74,809,412 INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 450464 as yet unmatched pairs. 14097 records in RAM. INFO 2026-06-08 08:58:42 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr14:81,504,201 INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 448851 as yet unmatched pairs. 12483 records in RAM. INFO 2026-06-08 08:58:43 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr14:94,062,268 INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 447867 as yet unmatched pairs. 11496 records in RAM. INFO 2026-06-08 08:58:45 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr14:101,986,065 INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 445814 as yet unmatched pairs. 9433 records in RAM. INFO 2026-06-08 08:58:46 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr14:103,129,761 INFO 2026-06-08 08:58:46 MarkDuplicates Tracking 443543 as yet unmatched pairs. 7162 records in RAM. INFO 2026-06-08 08:58:48 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr14:104,887,602 INFO 2026-06-08 08:58:48 MarkDuplicates Tracking 441794 as yet unmatched pairs. 5413 records in RAM. INFO 2026-06-08 08:58:50 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr14:104,949,621 INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 441777 as yet unmatched pairs. 5396 records in RAM. INFO 2026-06-08 08:58:51 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr14:105,624,468 INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 438431 as yet unmatched pairs. 2047 records in RAM. INFO 2026-06-08 08:58:53 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 2s. Last read position: chr14:105,854,923 INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 437026 as yet unmatched pairs. 641 records in RAM. INFO 2026-06-08 08:58:55 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr15:29,268,744 INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 435291 as yet unmatched pairs. 29193 records in RAM. INFO 2026-06-08 08:58:57 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr15:32,732,611 INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 435716 as yet unmatched pairs. 29618 records in RAM. INFO 2026-06-08 08:58:59 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr15:40,022,530 INFO 2026-06-08 08:58:59 MarkDuplicates Tracking 432110 as yet unmatched pairs. 26011 records in RAM. INFO 2026-06-08 08:59:00 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr15:41,749,304 INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 430772 as yet unmatched pairs. 24672 records in RAM. INFO 2026-06-08 08:59:02 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr15:43,527,273 INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 428852 as yet unmatched pairs. 22752 records in RAM. INFO 2026-06-08 08:59:04 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr15:45,072,331 INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 427259 as yet unmatched pairs. 21159 records in RAM. INFO 2026-06-08 08:59:05 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr15:52,319,148 INFO 2026-06-08 08:59:05 MarkDuplicates Tracking 425497 as yet unmatched pairs. 19396 records in RAM. INFO 2026-06-08 08:59:08 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr15:61,941,809 INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 424116 as yet unmatched pairs. 18008 records in RAM. INFO 2026-06-08 08:59:10 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr15:64,156,793 INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 423369 as yet unmatched pairs. 17256 records in RAM. INFO 2026-06-08 08:59:11 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr15:68,278,633 INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 420670 as yet unmatched pairs. 14556 records in RAM. INFO 2026-06-08 08:59:13 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr15:73,573,576 INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 419105 as yet unmatched pairs. 12991 records in RAM. INFO 2026-06-08 08:59:14 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr15:74,893,209 INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 416972 as yet unmatched pairs. 10858 records in RAM. INFO 2026-06-08 08:59:16 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr15:76,287,908 INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 415536 as yet unmatched pairs. 9422 records in RAM. INFO 2026-06-08 08:59:17 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr15:82,372,480 INFO 2026-06-08 08:59:17 MarkDuplicates Tracking 413696 as yet unmatched pairs. 7582 records in RAM. INFO 2026-06-08 08:59:19 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr15:88,901,677 INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 412642 as yet unmatched pairs. 6528 records in RAM. INFO 2026-06-08 08:59:20 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr15:90,875,620 INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 409943 as yet unmatched pairs. 3827 records in RAM. INFO 2026-06-08 08:59:22 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr15:99,130,211 INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 410325 as yet unmatched pairs. 4208 records in RAM. INFO 2026-06-08 08:59:24 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr16:18,605 INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 406164 as yet unmatched pairs. 68560 records in RAM. INFO 2026-06-08 08:59:25 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr16:582,903 INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 404423 as yet unmatched pairs. 66817 records in RAM. INFO 2026-06-08 08:59:27 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr16:1,215,296 INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 402166 as yet unmatched pairs. 64548 records in RAM. INFO 2026-06-08 08:59:29 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr16:1,775,393 INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 399831 as yet unmatched pairs. 62213 records in RAM. INFO 2026-06-08 08:59:30 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr16:2,097,868 INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 397477 as yet unmatched pairs. 59853 records in RAM. INFO 2026-06-08 08:59:32 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr16:2,262,374 INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 395211 as yet unmatched pairs. 57583 records in RAM. INFO 2026-06-08 08:59:33 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr16:2,768,251 INFO 2026-06-08 08:59:33 MarkDuplicates Tracking 393789 as yet unmatched pairs. 56149 records in RAM. INFO 2026-06-08 08:59:35 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr16:3,508,435 INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 391784 as yet unmatched pairs. 54138 records in RAM. INFO 2026-06-08 08:59:37 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr16:4,752,933 INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 389852 as yet unmatched pairs. 52206 records in RAM. INFO 2026-06-08 08:59:38 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr16:11,765,137 INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 387828 as yet unmatched pairs. 50181 records in RAM. INFO 2026-06-08 08:59:39 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr16:14,920,834 INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 387200 as yet unmatched pairs. 49553 records in RAM. INFO 2026-06-08 08:59:41 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 1s. Last read position: chr16:15,133,821 INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 386365 as yet unmatched pairs. 48718 records in RAM. INFO 2026-06-08 08:59:43 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr16:15,719,267 INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 389172 as yet unmatched pairs. 51524 records in RAM. INFO 2026-06-08 08:59:45 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr16:15,737,580 INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 383372 as yet unmatched pairs. 45724 records in RAM. INFO 2026-06-08 08:59:46 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr16:15,771,638 INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 384729 as yet unmatched pairs. 47081 records in RAM. INFO 2026-06-08 08:59:48 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr16:16,317,217 INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 379604 as yet unmatched pairs. 41956 records in RAM. INFO 2026-06-08 08:59:49 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr16:16,357,311 INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 380286 as yet unmatched pairs. 42638 records in RAM. INFO 2026-06-08 08:59:50 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr16:18,345,340 INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 379684 as yet unmatched pairs. 42036 records in RAM. INFO 2026-06-08 08:59:52 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr16:18,385,421 INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 378353 as yet unmatched pairs. 40705 records in RAM. INFO 2026-06-08 08:59:53 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr16:18,859,668 INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 376309 as yet unmatched pairs. 38661 records in RAM. INFO 2026-06-08 08:59:55 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr16:21,456,348 INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 375284 as yet unmatched pairs. 37636 records in RAM. INFO 2026-06-08 08:59:56 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr16:22,480,269 INFO 2026-06-08 08:59:56 MarkDuplicates Tracking 374352 as yet unmatched pairs. 36704 records in RAM. INFO 2026-06-08 08:59:57 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr16:24,930,916 INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 373483 as yet unmatched pairs. 35835 records in RAM. INFO 2026-06-08 08:59:59 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr16:28,711,499 INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 371825 as yet unmatched pairs. 34174 records in RAM. INFO 2026-06-08 09:00:00 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr16:29,382,943 INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 370496 as yet unmatched pairs. 32845 records in RAM. INFO 2026-06-08 09:00:01 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr16:29,808,255 INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 370314 as yet unmatched pairs. 32663 records in RAM. INFO 2026-06-08 09:00:03 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr16:30,069,315 INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 369060 as yet unmatched pairs. 31409 records in RAM. INFO 2026-06-08 09:00:05 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr16:30,358,008 INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 366356 as yet unmatched pairs. 28704 records in RAM. INFO 2026-06-08 09:00:06 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr16:30,751,144 INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 364378 as yet unmatched pairs. 26721 records in RAM. INFO 2026-06-08 09:00:08 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr16:31,189,693 INFO 2026-06-08 09:00:08 MarkDuplicates Tracking 365118 as yet unmatched pairs. 27459 records in RAM. INFO 2026-06-08 09:00:09 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr16:50,100,283 INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 360771 as yet unmatched pairs. 23110 records in RAM. INFO 2026-06-08 09:00:11 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr16:56,389,308 INFO 2026-06-08 09:00:11 MarkDuplicates Tracking 359309 as yet unmatched pairs. 21646 records in RAM. INFO 2026-06-08 09:00:12 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr16:57,758,770 INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 357474 as yet unmatched pairs. 19811 records in RAM. INFO 2026-06-08 09:00:14 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr16:66,941,516 INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 356762 as yet unmatched pairs. 19098 records in RAM. INFO 2026-06-08 09:00:16 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr16:67,868,335 INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 353924 as yet unmatched pairs. 16258 records in RAM. INFO 2026-06-08 09:00:18 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr16:69,165,338 INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 351860 as yet unmatched pairs. 14194 records in RAM. INFO 2026-06-08 09:00:19 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:70,483,865 INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 350323 as yet unmatched pairs. 12657 records in RAM. INFO 2026-06-08 09:00:20 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:74,457,877 INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 348601 as yet unmatched pairs. 10931 records in RAM. INFO 2026-06-08 09:00:22 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:82,639,420 INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 346416 as yet unmatched pairs. 8736 records in RAM. INFO 2026-06-08 09:00:24 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:87,334,248 INFO 2026-06-08 09:00:24 MarkDuplicates Tracking 345040 as yet unmatched pairs. 7360 records in RAM. INFO 2026-06-08 09:00:25 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:88,646,808 INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 345486 as yet unmatched pairs. 7806 records in RAM. INFO 2026-06-08 09:00:27 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 2s. Last read position: chr16:89,316,970 INFO 2026-06-08 09:00:27 MarkDuplicates Tracking 341171 as yet unmatched pairs. 3491 records in RAM. INFO 2026-06-08 09:00:29 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:89,738,621 INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 338915 as yet unmatched pairs. 1232 records in RAM. INFO 2026-06-08 09:00:31 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr17:1,364,990 INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 339914 as yet unmatched pairs. 137033 records in RAM. INFO 2026-06-08 09:00:33 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr17:2,057,273 INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 334803 as yet unmatched pairs. 131921 records in RAM. INFO 2026-06-08 09:00:35 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr17:4,194,935 INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 332702 as yet unmatched pairs. 129815 records in RAM. INFO 2026-06-08 09:00:37 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr17:4,972,440 INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 330915 as yet unmatched pairs. 128028 records in RAM. INFO 2026-06-08 09:00:39 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 1s. Last read position: chr17:7,226,473 INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 328730 as yet unmatched pairs. 125843 records in RAM. INFO 2026-06-08 09:00:40 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,122 INFO 2026-06-08 09:00:40 MarkDuplicates Tracking 327159 as yet unmatched pairs. 124271 records in RAM. INFO 2026-06-08 09:00:42 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr17:7,911,609 INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 325600 as yet unmatched pairs. 122711 records in RAM. INFO 2026-06-08 09:00:43 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr17:15,999,915 INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 323494 as yet unmatched pairs. 120596 records in RAM. INFO 2026-06-08 09:00:45 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr17:17,812,693 INFO 2026-06-08 09:00:45 MarkDuplicates Tracking 322255 as yet unmatched pairs. 119357 records in RAM. INFO 2026-06-08 09:00:47 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr17:19,739,542 INFO 2026-06-08 09:00:47 MarkDuplicates Tracking 319469 as yet unmatched pairs. 116571 records in RAM. INFO 2026-06-08 09:00:48 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr17:28,686,387 INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 318044 as yet unmatched pairs. 115146 records in RAM. INFO 2026-06-08 09:00:50 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr17:31,034,327 INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 316036 as yet unmatched pairs. 113138 records in RAM. INFO 2026-06-08 09:00:51 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr17:35,845,024 INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 316185 as yet unmatched pairs. 113286 records in RAM. INFO 2026-06-08 09:00:53 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr17:38,722,701 INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 313463 as yet unmatched pairs. 110564 records in RAM. INFO 2026-06-08 09:00:55 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr17:39,712,447 INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 312443 as yet unmatched pairs. 109544 records in RAM. INFO 2026-06-08 09:00:56 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr17:40,331,179 INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 309859 as yet unmatched pairs. 106959 records in RAM. INFO 2026-06-08 09:00:58 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 2s. Last read position: chr17:41,769,096 INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 307477 as yet unmatched pairs. 104577 records in RAM. INFO 2026-06-08 09:01:00 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr17:42,536,308 INFO 2026-06-08 09:01:00 MarkDuplicates Tracking 305280 as yet unmatched pairs. 102380 records in RAM. INFO 2026-06-08 09:01:02 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr17:43,520,766 INFO 2026-06-08 09:01:02 MarkDuplicates Tracking 303546 as yet unmatched pairs. 100638 records in RAM. INFO 2026-06-08 09:01:04 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 1s. Last read position: chr17:44,854,269 INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 302150 as yet unmatched pairs. 99242 records in RAM. INFO 2026-06-08 09:01:05 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr17:46,548,253 INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 300128 as yet unmatched pairs. 97220 records in RAM. INFO 2026-06-08 09:01:07 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr17:48,852,931 INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 298535 as yet unmatched pairs. 95625 records in RAM. INFO 2026-06-08 09:01:08 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,891 INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 303759 as yet unmatched pairs. 100846 records in RAM. INFO 2026-06-08 09:01:10 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,879 INFO 2026-06-08 09:01:10 MarkDuplicates Tracking 322543 as yet unmatched pairs. 119629 records in RAM. INFO 2026-06-08 09:01:11 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,093 INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 375973 as yet unmatched pairs. 173059 records in RAM. INFO 2026-06-08 09:01:13 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,911 INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 366148 as yet unmatched pairs. 163234 records in RAM. INFO 2026-06-08 09:01:15 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,097 INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 412888 as yet unmatched pairs. 209974 records in RAM. INFO 2026-06-08 09:01:17 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,558 INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 376987 as yet unmatched pairs. 174073 records in RAM. INFO 2026-06-08 09:01:19 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,762 INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 359017 as yet unmatched pairs. 156103 records in RAM. INFO 2026-06-08 09:01:20 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,957 INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 358075 as yet unmatched pairs. 155161 records in RAM. INFO 2026-06-08 09:01:22 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,256 INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 346241 as yet unmatched pairs. 143327 records in RAM. INFO 2026-06-08 09:01:24 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,450 INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 355249 as yet unmatched pairs. 152335 records in RAM. INFO 2026-06-08 09:01:27 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,685 INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 380634 as yet unmatched pairs. 177711 records in RAM. INFO 2026-06-08 09:01:28 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,005 INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 347672 as yet unmatched pairs. 144748 records in RAM. INFO 2026-06-08 09:01:31 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,092 INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 375056 as yet unmatched pairs. 172131 records in RAM. INFO 2026-06-08 09:01:33 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,547 INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 356857 as yet unmatched pairs. 153932 records in RAM. INFO 2026-06-08 09:01:34 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,895 INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 350294 as yet unmatched pairs. 147369 records in RAM. INFO 2026-06-08 09:01:36 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,787 INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 340239 as yet unmatched pairs. 137314 records in RAM. INFO 2026-06-08 09:01:38 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,871 INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 370482 as yet unmatched pairs. 167554 records in RAM. INFO 2026-06-08 09:01:40 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,648 INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 329144 as yet unmatched pairs. 126214 records in RAM. INFO 2026-06-08 09:01:42 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,802 INFO 2026-06-08 09:01:42 MarkDuplicates Tracking 371111 as yet unmatched pairs. 168181 records in RAM. INFO 2026-06-08 09:01:44 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,021 INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 370219 as yet unmatched pairs. 167289 records in RAM. INFO 2026-06-08 09:01:45 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,995 INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 361275 as yet unmatched pairs. 158345 records in RAM. INFO 2026-06-08 09:01:48 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:27s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,158 INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 394698 as yet unmatched pairs. 191768 records in RAM. INFO 2026-06-08 09:02:46 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:16:25s. Time for last 1,000,000: 58s. Last read position: chr17:50,194,406 INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 365421 as yet unmatched pairs. 162491 records in RAM. INFO 2026-06-08 09:03:57 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 70s. Last read position: chr17:50,194,720 INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 317762 as yet unmatched pairs. 114832 records in RAM. INFO 2026-06-08 09:03:58 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,816 INFO 2026-06-08 09:03:58 MarkDuplicates Tracking 330213 as yet unmatched pairs. 127283 records in RAM. INFO 2026-06-08 09:04:00 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,285 INFO 2026-06-08 09:04:00 MarkDuplicates Tracking 342982 as yet unmatched pairs. 140049 records in RAM. INFO 2026-06-08 09:04:02 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,571 INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 349069 as yet unmatched pairs. 146136 records in RAM. INFO 2026-06-08 09:04:04 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,923 INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 339127 as yet unmatched pairs. 136194 records in RAM. INFO 2026-06-08 09:04:06 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,161 INFO 2026-06-08 09:04:06 MarkDuplicates Tracking 366306 as yet unmatched pairs. 163373 records in RAM. INFO 2026-06-08 09:04:08 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,326 INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 343981 as yet unmatched pairs. 141048 records in RAM. INFO 2026-06-08 09:04:10 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,517 INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 341625 as yet unmatched pairs. 138692 records in RAM. INFO 2026-06-08 09:04:12 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:17:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,027 INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 362341 as yet unmatched pairs. 159408 records in RAM. INFO 2026-06-08 09:04:13 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,737 INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 334607 as yet unmatched pairs. 131674 records in RAM. INFO 2026-06-08 09:04:15 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,198,169 INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 284892 as yet unmatched pairs. 81959 records in RAM. INFO 2026-06-08 09:04:17 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,236 INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 291180 as yet unmatched pairs. 88247 records in RAM. INFO 2026-06-08 09:04:19 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,444 INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 263124 as yet unmatched pairs. 60191 records in RAM. INFO 2026-06-08 09:04:21 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,201,420 INFO 2026-06-08 09:04:21 MarkDuplicates Tracking 241467 as yet unmatched pairs. 38534 records in RAM. INFO 2026-06-08 09:04:23 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: chr17:57,106,972 INFO 2026-06-08 09:04:23 MarkDuplicates Tracking 227009 as yet unmatched pairs. 24071 records in RAM. INFO 2026-06-08 09:04:24 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:59,674,728 INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 226840 as yet unmatched pairs. 23895 records in RAM. INFO 2026-06-08 09:04:26 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:63,483,159 INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 222929 as yet unmatched pairs. 19983 records in RAM. INFO 2026-06-08 09:04:27 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:65,537,543 INFO 2026-06-08 09:04:27 MarkDuplicates Tracking 221392 as yet unmatched pairs. 18446 records in RAM. INFO 2026-06-08 09:04:29 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:73,286,486 INFO 2026-06-08 09:04:29 MarkDuplicates Tracking 219672 as yet unmatched pairs. 16726 records in RAM. INFO 2026-06-08 09:04:31 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:75,594,856 INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 217609 as yet unmatched pairs. 14661 records in RAM. INFO 2026-06-08 09:04:32 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 1s. Last read position: chr17:75,925,431 INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 215391 as yet unmatched pairs. 12443 records in RAM. INFO 2026-06-08 09:04:34 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 1s. Last read position: chr17:78,067,784 INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 213530 as yet unmatched pairs. 10582 records in RAM. INFO 2026-06-08 09:04:36 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr17:79,047,789 INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 211633 as yet unmatched pairs. 8685 records in RAM. INFO 2026-06-08 09:04:37 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:80,372,672 INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 210807 as yet unmatched pairs. 7859 records in RAM. INFO 2026-06-08 09:04:39 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr17:81,596,200 INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 207782 as yet unmatched pairs. 4830 records in RAM. INFO 2026-06-08 09:04:40 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr17:81,995,992 INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 206200 as yet unmatched pairs. 3248 records in RAM. INFO 2026-06-08 09:04:42 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:82,443,680 INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 204680 as yet unmatched pairs. 1728 records in RAM. INFO 2026-06-08 09:04:44 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:23s. Time for last 1,000,000: 1s. Last read position: chr18:8,825,802 INFO 2026-06-08 09:04:44 MarkDuplicates Tracking 201953 as yet unmatched pairs. 6287 records in RAM. INFO 2026-06-08 09:04:46 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr18:26,052,624 INFO 2026-06-08 09:04:46 MarkDuplicates Tracking 200444 as yet unmatched pairs. 4775 records in RAM. INFO 2026-06-08 09:04:47 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr18:49,783,735 INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 198676 as yet unmatched pairs. 3002 records in RAM. INFO 2026-06-08 09:04:49 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:28s. Time for last 1,000,000: 1s. Last read position: chr18:63,410,296 INFO 2026-06-08 09:04:49 MarkDuplicates Tracking 196774 as yet unmatched pairs. 1100 records in RAM. INFO 2026-06-08 09:04:51 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:30s. Time for last 1,000,000: 2s. Last read position: chr19:617,635 INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 195022 as yet unmatched pairs. 81043 records in RAM. INFO 2026-06-08 09:04:53 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 2s. Last read position: chr19:1,068,486 INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 193460 as yet unmatched pairs. 79481 records in RAM. INFO 2026-06-08 09:04:55 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 2s. Last read position: chr19:1,440,067 INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 196393 as yet unmatched pairs. 82412 records in RAM. INFO 2026-06-08 09:04:57 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr19:2,137,048 INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 189037 as yet unmatched pairs. 75054 records in RAM. INFO 2026-06-08 09:04:59 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 1s. Last read position: chr19:3,433,574 INFO 2026-06-08 09:04:59 MarkDuplicates Tracking 187046 as yet unmatched pairs. 73062 records in RAM. INFO 2026-06-08 09:05:00 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr19:4,364,101 INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 184747 as yet unmatched pairs. 70762 records in RAM. INFO 2026-06-08 09:05:02 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr19:5,686,505 INFO 2026-06-08 09:05:02 MarkDuplicates Tracking 182678 as yet unmatched pairs. 68692 records in RAM. INFO 2026-06-08 09:05:03 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr19:6,694,597 INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 181530 as yet unmatched pairs. 67543 records in RAM. INFO 2026-06-08 09:05:05 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr19:7,870,947 INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 178693 as yet unmatched pairs. 64705 records in RAM. INFO 2026-06-08 09:05:07 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 1s. Last read position: chr19:10,092,215 INFO 2026-06-08 09:05:07 MarkDuplicates Tracking 176809 as yet unmatched pairs. 62820 records in RAM. INFO 2026-06-08 09:05:08 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr19:10,735,693 INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 175206 as yet unmatched pairs. 61217 records in RAM. INFO 2026-06-08 09:05:09 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr19:11,364,365 INFO 2026-06-08 09:05:09 MarkDuplicates Tracking 173080 as yet unmatched pairs. 59091 records in RAM. INFO 2026-06-08 09:05:11 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr19:12,731,402 INFO 2026-06-08 09:05:11 MarkDuplicates Tracking 172111 as yet unmatched pairs. 58122 records in RAM. INFO 2026-06-08 09:05:13 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 1s. Last read position: chr19:13,842,189 INFO 2026-06-08 09:05:13 MarkDuplicates Tracking 169036 as yet unmatched pairs. 55047 records in RAM. INFO 2026-06-08 09:05:14 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,894 INFO 2026-06-08 09:05:14 MarkDuplicates Tracking 168308 as yet unmatched pairs. 54319 records in RAM. INFO 2026-06-08 09:05:17 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 2s. Last read position: chr19:15,264,505 INFO 2026-06-08 09:05:17 MarkDuplicates Tracking 166226 as yet unmatched pairs. 52236 records in RAM. INFO 2026-06-08 09:05:19 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr19:16,889,199 INFO 2026-06-08 09:05:19 MarkDuplicates Tracking 163304 as yet unmatched pairs. 49314 records in RAM. INFO 2026-06-08 09:05:21 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 1s. Last read position: chr19:17,861,323 INFO 2026-06-08 09:05:21 MarkDuplicates Tracking 162085 as yet unmatched pairs. 48094 records in RAM. INFO 2026-06-08 09:05:22 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr19:18,588,810 INFO 2026-06-08 09:05:22 MarkDuplicates Tracking 158939 as yet unmatched pairs. 44948 records in RAM. INFO 2026-06-08 09:05:23 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 1s. Last read position: chr19:19,654,578 INFO 2026-06-08 09:05:23 MarkDuplicates Tracking 157240 as yet unmatched pairs. 43249 records in RAM. INFO 2026-06-08 09:05:25 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr19:34,960,856 INFO 2026-06-08 09:05:25 MarkDuplicates Tracking 154824 as yet unmatched pairs. 40831 records in RAM. INFO 2026-06-08 09:05:27 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr19:35,755,532 INFO 2026-06-08 09:05:27 MarkDuplicates Tracking 154101 as yet unmatched pairs. 40108 records in RAM. INFO 2026-06-08 09:05:28 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:38,406,948 INFO 2026-06-08 09:05:28 MarkDuplicates Tracking 150649 as yet unmatched pairs. 36656 records in RAM. INFO 2026-06-08 09:05:30 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr19:38,881,099 INFO 2026-06-08 09:05:30 MarkDuplicates Tracking 149453 as yet unmatched pairs. 35460 records in RAM. INFO 2026-06-08 09:05:31 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:39,873,721 INFO 2026-06-08 09:05:31 MarkDuplicates Tracking 148148 as yet unmatched pairs. 34154 records in RAM. INFO 2026-06-08 09:05:33 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:39,943,427 INFO 2026-06-08 09:05:33 MarkDuplicates Tracking 146864 as yet unmatched pairs. 32870 records in RAM. INFO 2026-06-08 09:05:34 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr19:40,717,990 INFO 2026-06-08 09:05:34 MarkDuplicates Tracking 143760 as yet unmatched pairs. 29766 records in RAM. INFO 2026-06-08 09:05:36 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,575 INFO 2026-06-08 09:05:36 MarkDuplicates Tracking 145256 as yet unmatched pairs. 31262 records in RAM. INFO 2026-06-08 09:05:37 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:41,957,065 INFO 2026-06-08 09:05:37 MarkDuplicates Tracking 140963 as yet unmatched pairs. 26969 records in RAM. INFO 2026-06-08 09:05:39 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:42,292,622 INFO 2026-06-08 09:05:39 MarkDuplicates Tracking 138747 as yet unmatched pairs. 24753 records in RAM. INFO 2026-06-08 09:05:40 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:44,878,652 INFO 2026-06-08 09:05:40 MarkDuplicates Tracking 136114 as yet unmatched pairs. 22117 records in RAM. INFO 2026-06-08 09:05:42 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr19:45,777,390 INFO 2026-06-08 09:05:42 MarkDuplicates Tracking 135356 as yet unmatched pairs. 21359 records in RAM. INFO 2026-06-08 09:05:44 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:24s. Time for last 1,000,000: 2s. Last read position: chr19:47,067,578 INFO 2026-06-08 09:05:44 MarkDuplicates Tracking 132629 as yet unmatched pairs. 18631 records in RAM. INFO 2026-06-08 09:05:46 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr19:48,478,339 INFO 2026-06-08 09:05:46 MarkDuplicates Tracking 129970 as yet unmatched pairs. 15972 records in RAM. INFO 2026-06-08 09:05:48 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 1s. Last read position: chr19:49,148,189 INFO 2026-06-08 09:05:48 MarkDuplicates Tracking 128019 as yet unmatched pairs. 14021 records in RAM. INFO 2026-06-08 09:05:49 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:49,599,613 INFO 2026-06-08 09:05:49 MarkDuplicates Tracking 126272 as yet unmatched pairs. 12274 records in RAM. INFO 2026-06-08 09:05:51 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr19:50,210,745 INFO 2026-06-08 09:05:51 MarkDuplicates Tracking 124221 as yet unmatched pairs. 10221 records in RAM. INFO 2026-06-08 09:05:52 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:51,531,316 INFO 2026-06-08 09:05:52 MarkDuplicates Tracking 121866 as yet unmatched pairs. 7866 records in RAM. INFO 2026-06-08 09:05:54 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr19:54,207,413 INFO 2026-06-08 09:05:54 MarkDuplicates Tracking 121384 as yet unmatched pairs. 7384 records in RAM. INFO 2026-06-08 09:05:55 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr19:55,377,965 INFO 2026-06-08 09:05:55 MarkDuplicates Tracking 118323 as yet unmatched pairs. 4323 records in RAM. INFO 2026-06-08 09:05:57 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:56,223,659 INFO 2026-06-08 09:05:57 MarkDuplicates Tracking 116051 as yet unmatched pairs. 2050 records in RAM. INFO 2026-06-08 09:05:58 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:58,550,165 INFO 2026-06-08 09:05:58 MarkDuplicates Tracking 114893 as yet unmatched pairs. 889 records in RAM. INFO 2026-06-08 09:06:00 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr20:2,839,153 INFO 2026-06-08 09:06:00 MarkDuplicates Tracking 112346 as yet unmatched pairs. 31318 records in RAM. INFO 2026-06-08 09:06:02 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr20:4,902,512 INFO 2026-06-08 09:06:02 MarkDuplicates Tracking 110307 as yet unmatched pairs. 29269 records in RAM. INFO 2026-06-08 09:06:03 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 1s. Last read position: chr20:17,636,645 INFO 2026-06-08 09:06:03 MarkDuplicates Tracking 109519 as yet unmatched pairs. 28481 records in RAM. INFO 2026-06-08 09:06:05 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr20:22,582,039 INFO 2026-06-08 09:06:05 MarkDuplicates Tracking 106993 as yet unmatched pairs. 25955 records in RAM. INFO 2026-06-08 09:06:07 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr20:31,527,558 INFO 2026-06-08 09:06:07 MarkDuplicates Tracking 105504 as yet unmatched pairs. 24464 records in RAM. INFO 2026-06-08 09:06:08 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr20:34,112,103 INFO 2026-06-08 09:06:08 MarkDuplicates Tracking 103314 as yet unmatched pairs. 22274 records in RAM. INFO 2026-06-08 09:06:10 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chr20:35,503,693 INFO 2026-06-08 09:06:10 MarkDuplicates Tracking 101665 as yet unmatched pairs. 20625 records in RAM. INFO 2026-06-08 09:06:12 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr20:36,548,114 INFO 2026-06-08 09:06:12 MarkDuplicates Tracking 104559 as yet unmatched pairs. 23519 records in RAM. INFO 2026-06-08 09:06:14 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr20:38,488,530 INFO 2026-06-08 09:06:14 MarkDuplicates Tracking 98439 as yet unmatched pairs. 17399 records in RAM. INFO 2026-06-08 09:06:15 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 1s. Last read position: chr20:44,355,775 INFO 2026-06-08 09:06:15 MarkDuplicates Tracking 96934 as yet unmatched pairs. 15894 records in RAM. INFO 2026-06-08 09:06:17 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr20:45,891,575 INFO 2026-06-08 09:06:17 MarkDuplicates Tracking 96254 as yet unmatched pairs. 15214 records in RAM. INFO 2026-06-08 09:06:19 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 2s. Last read position: chr20:47,757,200 INFO 2026-06-08 09:06:19 MarkDuplicates Tracking 93809 as yet unmatched pairs. 12769 records in RAM. INFO 2026-06-08 09:06:21 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr20:50,903,953 INFO 2026-06-08 09:06:21 MarkDuplicates Tracking 91569 as yet unmatched pairs. 10529 records in RAM. INFO 2026-06-08 09:06:22 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr20:58,692,903 INFO 2026-06-08 09:06:22 MarkDuplicates Tracking 90517 as yet unmatched pairs. 9477 records in RAM. INFO 2026-06-08 09:06:24 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr20:62,306,716 INFO 2026-06-08 09:06:24 MarkDuplicates Tracking 88236 as yet unmatched pairs. 7195 records in RAM. INFO 2026-06-08 09:06:26 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,101 INFO 2026-06-08 09:06:26 MarkDuplicates Tracking 85996 as yet unmatched pairs. 4955 records in RAM. INFO 2026-06-08 09:06:27 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr20:63,565,455 INFO 2026-06-08 09:06:27 MarkDuplicates Tracking 83844 as yet unmatched pairs. 2803 records in RAM. INFO 2026-06-08 09:06:29 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr20:64,267,886 INFO 2026-06-08 09:06:29 MarkDuplicates Tracking 81203 as yet unmatched pairs. 162 records in RAM. INFO 2026-06-08 09:06:30 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr21:8,217,391 INFO 2026-06-08 09:06:30 MarkDuplicates Tracking 79764 as yet unmatched pairs. 15388 records in RAM. INFO 2026-06-08 09:06:31 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr21:8,436,674 INFO 2026-06-08 09:06:31 MarkDuplicates Tracking 79140 as yet unmatched pairs. 14757 records in RAM. INFO 2026-06-08 09:06:32 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr21:25,955,644 INFO 2026-06-08 09:06:32 MarkDuplicates Tracking 78638 as yet unmatched pairs. 14255 records in RAM. INFO 2026-06-08 09:06:34 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr21:33,552,493 INFO 2026-06-08 09:06:34 MarkDuplicates Tracking 76535 as yet unmatched pairs. 12152 records in RAM. INFO 2026-06-08 09:06:36 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr21:39,348,302 INFO 2026-06-08 09:06:36 MarkDuplicates Tracking 74801 as yet unmatched pairs. 10418 records in RAM. INFO 2026-06-08 09:06:37 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr21:44,126,083 INFO 2026-06-08 09:06:37 MarkDuplicates Tracking 72436 as yet unmatched pairs. 8053 records in RAM. INFO 2026-06-08 09:06:39 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr21:45,482,003 INFO 2026-06-08 09:06:39 MarkDuplicates Tracking 71406 as yet unmatched pairs. 7015 records in RAM. INFO 2026-06-08 09:06:41 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,389 INFO 2026-06-08 09:06:41 MarkDuplicates Tracking 73412 as yet unmatched pairs. 9021 records in RAM. INFO 2026-06-08 09:06:42 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr21:46,118,630 INFO 2026-06-08 09:06:42 MarkDuplicates Tracking 67900 as yet unmatched pairs. 3509 records in RAM. INFO 2026-06-08 09:06:44 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr21:46,432,151 INFO 2026-06-08 09:06:44 MarkDuplicates Tracking 64702 as yet unmatched pairs. 310 records in RAM. INFO 2026-06-08 09:06:46 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr22:19,978,032 INFO 2026-06-08 09:06:46 MarkDuplicates Tracking 62974 as yet unmatched pairs. 26631 records in RAM. INFO 2026-06-08 09:06:47 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr22:22,647,233 INFO 2026-06-08 09:06:47 MarkDuplicates Tracking 61076 as yet unmatched pairs. 24733 records in RAM. INFO 2026-06-08 09:06:49 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr22:24,167,055 INFO 2026-06-08 09:06:49 MarkDuplicates Tracking 59031 as yet unmatched pairs. 22688 records in RAM. INFO 2026-06-08 09:06:50 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr22:29,286,960 INFO 2026-06-08 09:06:50 MarkDuplicates Tracking 58618 as yet unmatched pairs. 22275 records in RAM. INFO 2026-06-08 09:06:52 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr22:30,425,839 INFO 2026-06-08 09:06:52 MarkDuplicates Tracking 55348 as yet unmatched pairs. 19005 records in RAM. INFO 2026-06-08 09:06:54 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr22:32,388,037 INFO 2026-06-08 09:06:54 MarkDuplicates Tracking 53947 as yet unmatched pairs. 17604 records in RAM. INFO 2026-06-08 09:06:55 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 1s. Last read position: chr22:36,294,990 INFO 2026-06-08 09:06:55 MarkDuplicates Tracking 52457 as yet unmatched pairs. 16113 records in RAM. INFO 2026-06-08 09:06:56 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr22:37,480,258 INFO 2026-06-08 09:06:56 MarkDuplicates Tracking 49770 as yet unmatched pairs. 13426 records in RAM. INFO 2026-06-08 09:06:58 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:37s. Time for last 1,000,000: 1s. Last read position: chr22:38,493,722 INFO 2026-06-08 09:06:58 MarkDuplicates Tracking 48223 as yet unmatched pairs. 11879 records in RAM. INFO 2026-06-08 09:07:00 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 1s. Last read position: chr22:40,277,998 INFO 2026-06-08 09:07:00 MarkDuplicates Tracking 45927 as yet unmatched pairs. 9583 records in RAM. INFO 2026-06-08 09:07:02 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr22:41,877,318 INFO 2026-06-08 09:07:02 MarkDuplicates Tracking 44656 as yet unmatched pairs. 8312 records in RAM. INFO 2026-06-08 09:07:03 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:20:42s. Time for last 1,000,000: 1s. Last read position: chr22:45,211,969 INFO 2026-06-08 09:07:03 MarkDuplicates Tracking 42806 as yet unmatched pairs. 6462 records in RAM. INFO 2026-06-08 09:07:05 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:20:44s. Time for last 1,000,000: 1s. Last read position: chr22:50,227,963 INFO 2026-06-08 09:07:05 MarkDuplicates Tracking 40162 as yet unmatched pairs. 3818 records in RAM. INFO 2026-06-08 09:07:06 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr22:50,506,073 INFO 2026-06-08 09:07:06 MarkDuplicates Tracking 37847 as yet unmatched pairs. 1503 records in RAM. INFO 2026-06-08 09:07:08 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chrX:2,740,778 INFO 2026-06-08 09:07:08 MarkDuplicates Tracking 36464 as yet unmatched pairs. 31647 records in RAM. INFO 2026-06-08 09:07:10 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chrX:16,818,749 INFO 2026-06-08 09:07:10 MarkDuplicates Tracking 33843 as yet unmatched pairs. 29026 records in RAM. INFO 2026-06-08 09:07:12 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chrX:32,849,728 INFO 2026-06-08 09:07:12 MarkDuplicates Tracking 32396 as yet unmatched pairs. 27570 records in RAM. INFO 2026-06-08 09:07:13 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chrX:43,731,249 INFO 2026-06-08 09:07:13 MarkDuplicates Tracking 31365 as yet unmatched pairs. 26539 records in RAM. INFO 2026-06-08 09:07:15 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chrX:48,461,001 INFO 2026-06-08 09:07:15 MarkDuplicates Tracking 29265 as yet unmatched pairs. 24438 records in RAM. INFO 2026-06-08 09:07:17 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chrX:49,119,705 INFO 2026-06-08 09:07:17 MarkDuplicates Tracking 27187 as yet unmatched pairs. 22360 records in RAM. INFO 2026-06-08 09:07:18 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chrX:53,548,995 INFO 2026-06-08 09:07:18 MarkDuplicates Tracking 25957 as yet unmatched pairs. 21130 records in RAM. INFO 2026-06-08 09:07:20 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chrX:65,667,777 INFO 2026-06-08 09:07:20 MarkDuplicates Tracking 24445 as yet unmatched pairs. 19618 records in RAM. INFO 2026-06-08 09:07:22 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chrX:71,298,802 INFO 2026-06-08 09:07:22 MarkDuplicates Tracking 24022 as yet unmatched pairs. 19195 records in RAM. INFO 2026-06-08 09:07:24 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chrX:77,697,593 INFO 2026-06-08 09:07:24 MarkDuplicates Tracking 21787 as yet unmatched pairs. 16960 records in RAM. INFO 2026-06-08 09:07:25 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chrX:103,253,827 INFO 2026-06-08 09:07:25 MarkDuplicates Tracking 19325 as yet unmatched pairs. 14497 records in RAM. INFO 2026-06-08 09:07:27 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 2s. Last read position: chrX:119,871,940 INFO 2026-06-08 09:07:27 MarkDuplicates Tracking 18814 as yet unmatched pairs. 13986 records in RAM. INFO 2026-06-08 09:07:29 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chrX:136,209,112 INFO 2026-06-08 09:07:29 MarkDuplicates Tracking 16857 as yet unmatched pairs. 12029 records in RAM. INFO 2026-06-08 09:07:30 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chrX:153,785,913 INFO 2026-06-08 09:07:30 MarkDuplicates Tracking 14816 as yet unmatched pairs. 9986 records in RAM. INFO 2026-06-08 09:07:32 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chrX:154,348,984 INFO 2026-06-08 09:07:32 MarkDuplicates Tracking 16136 as yet unmatched pairs. 11306 records in RAM. INFO 2026-06-08 09:07:33 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chrX:154,357,466 INFO 2026-06-08 09:07:33 MarkDuplicates Tracking 12829 as yet unmatched pairs. 7999 records in RAM. INFO 2026-06-08 09:07:35 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 1s. Last read position: chrX:154,362,004 INFO 2026-06-08 09:07:35 MarkDuplicates Tracking 10468 as yet unmatched pairs. 5638 records in RAM. INFO 2026-06-08 09:07:36 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chrX:154,367,920 INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 12177 as yet unmatched pairs. 7347 records in RAM. INFO 2026-06-08 09:07:38 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chrX:154,774,602 INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 5467 as yet unmatched pairs. 637 records in RAM. INFO 2026-06-08 09:07:39 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,855 INFO 2026-06-08 09:07:39 MarkDuplicates Tracking 3020 as yet unmatched pairs. 124 records in RAM. INFO 2026-06-08 09:07:40 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,051 INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 1531 as yet unmatched pairs. 1520 records in RAM. INFO 2026-06-08 09:07:41 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,725 INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 15 as yet unmatched pairs. 4 records in RAM. INFO 2026-06-08 09:07:41 MarkDuplicates Read 636073899 records. 0 pairs never matched. INFO 2026-06-08 09:08:29 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141696; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:08:29 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk. INFO 2026-06-08 09:08:32 MarkDuplicates Traversing read pair information and detecting duplicates. WARNING 2026-06-08 09:08:32 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:09:02 OpticalDuplicateFinder Large duplicate set. size = 1177 INFO 2026-06-08 09:09:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,711 INFO 2026-06-08 09:09:47 OpticalDuplicateFinder Large duplicate set. size = 1232 INFO 2026-06-08 09:09:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,407 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1552 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,006 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1562 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,511 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1225 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,859 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1048 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,473 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1733 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,425 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1222 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,041 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1231 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,745 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1276 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,821 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,794 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,062 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1259 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,041 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder Large duplicate set. size = 1039 INFO 2026-06-08 09:09:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,033 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1084 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,722 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1429 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,512 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1023 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,200 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1507 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,557 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 2595 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,699 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,697 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1022 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,396 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1878 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,546 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1247 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,706 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 2954 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,610 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,664 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,191 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1297 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,029 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1196 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,938 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1308 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,268 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1416 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,564 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1013 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,365 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1198 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,218 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1559 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,627 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1326 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,228 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 3206 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,025 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,375 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,931 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,810 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1528 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,671 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1341 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,230 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-08 09:09:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,690 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1277 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,321 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1128 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,539 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,971 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1183 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,052 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1102 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,210 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1320 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,757 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1027 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,157 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1494 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,358 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1319 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,155 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1108 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,247 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1540 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,558 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1014 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,205 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1095 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,013 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1199 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,954 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1114 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,406 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1177 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,017 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1408 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,665 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1989 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,465 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,091 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1638 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,290 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 2326 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,572 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,245 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1516 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,886 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1154 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,842 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1090 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,320 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1252 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,556 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1063 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,163 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,013 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 09:09:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,605 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1126 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,213 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1262 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,325 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,761 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1135 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,961 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1067 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,303 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1414 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,873 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1067 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,376 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1556 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,307 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1667 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,401 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1152 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,769 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1673 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,240 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1172 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,197 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1714 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,006 INFO 2026-06-08 09:09:59 OpticalDuplicateFinder Large duplicate set. size = 1248 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,016 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1375 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,770 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,847 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1327 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,898 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1310 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,236 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1935 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,136 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1136 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,750 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1167 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,435 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1513 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,369 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1117 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,215 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1057 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,068 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1158 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,984 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,795 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1590 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,398 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1659 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,754 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 2507 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,290 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,560 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1397 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,269 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 3046 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,629 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,724 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,212 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1146 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,838 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1193 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,720 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1360 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,160 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1107 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,495 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1049 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,460 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1838 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,751 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1801 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,117 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 2298 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,111 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,645 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1021 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,531 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,762 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1094 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,787 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1248 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,848 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1220 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,719 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1374 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,100 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1633 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,386 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1063 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,713 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1179 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,800 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1085 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,769 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1385 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,320 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1394 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,564 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1012 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,356 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1048 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,221 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-08 09:10:00 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,712 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1519 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,514 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1028 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,055 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1886 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,383 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1069 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,574 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1651 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,106 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1573 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,556 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 2122 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,887 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,301 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 2125 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,666 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,514 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 2496 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,225 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,492 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1343 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,097 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1646 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,471 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 2216 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,597 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,129 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1304 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,749 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 2309 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,720 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,032 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 2271 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,053 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,392 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1213 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,251 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1612 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,323 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1038 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,125 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1545 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,039 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,808 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1935 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,001 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1099 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,638 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1624 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,737 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1768 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,134 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1752 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,236 INFO 2026-06-08 09:10:01 OpticalDuplicateFinder Large duplicate set. size = 1497 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,277 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1238 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,658 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1295 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,207 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1343 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,949 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1212 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,796 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1160 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,696 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1566 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,867 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1375 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,020 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1439 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,255 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 2366 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,611 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,102 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1482 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,758 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1427 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,014 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1681 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,201 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1661 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,285 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1025 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,059 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1634 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,576 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1020 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,305 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1030 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,435 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,940 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 2215 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,951 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,978 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1173 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,377 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1061 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,616 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1151 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,303 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1086 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,367 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1641 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,669 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1166 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,689 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1177 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,265 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1370 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,802 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,674 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1103 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,899 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1525 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,944 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1960 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,107 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1197 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,084 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1527 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,210 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1115 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,011 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1643 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,647 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1498 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,576 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1412 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,504 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1773 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,416 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,976 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1001 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,124 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1670 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,244 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1217 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,459 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1360 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,117 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1624 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,324 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1003 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,705 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder Large duplicate set. size = 1827 INFO 2026-06-08 09:10:02 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,398 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1222 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,076 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1371 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,200 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1089 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,174 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1214 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,597 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1517 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,926 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1729 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,179 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 2633 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,994 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,636 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1873 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,738 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 2273 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,911 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,453 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1164 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,774 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1010 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,837 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1301 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,138 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1084 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,682 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1097 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,713 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1575 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,804 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1037 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,800 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 2539 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,290 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,186 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1111 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,348 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1390 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,913 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1467 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,485 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1529 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,011 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1394 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,920 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1836 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,985 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1104 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,548 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1257 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,438 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 2372 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,570 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,162 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1209 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,414 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1001 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,326 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 2302 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,727 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,022 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1287 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,784 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1595 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,644 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1235 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,043 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1031 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,400 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 2111 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,347 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,414 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1397 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,421 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1190 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,898 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder Large duplicate set. size = 1373 INFO 2026-06-08 09:10:03 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,655 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder Large duplicate set. size = 1500 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,602 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder Large duplicate set. size = 1050 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,824 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder Large duplicate set. size = 1882 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,275 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder Large duplicate set. size = 1865 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,958 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder Large duplicate set. size = 2000 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,816 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,669 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder Large duplicate set. size = 2260 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,069 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,258 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,898 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder Large duplicate set. size = 1140 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,739 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder Large duplicate set. size = 1018 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,438 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder Large duplicate set. size = 1123 INFO 2026-06-08 09:10:04 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,162 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1394 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,997 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1192 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,173 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1075 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,786 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1307 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,513 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1360 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,257 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1301 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,576 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1117 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,042 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1008 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,412 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1258 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,516 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1080 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,555 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1070 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,438 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1516 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,446 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 2015 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,902 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,533 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1236 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,383 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1930 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,232 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1015 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,613 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1053 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,762 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1496 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,725 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 2636 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,296 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,804 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1136 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,198 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1296 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,952 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1540 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,112 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1040 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,796 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1042 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,258 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder Large duplicate set. size = 1296 INFO 2026-06-08 09:10:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,697 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1321 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,792 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1208 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,814 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1128 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,468 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1066 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,481 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1317 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,312 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1160 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,987 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1219 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,068 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1398 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,592 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1131 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,053 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1475 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,332 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 2769 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,741 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,477 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1853 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,185 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1404 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,615 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1233 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,123 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1910 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,254 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 2454 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,642 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,196 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1045 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,104 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1245 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,625 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 2619 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,587 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,276 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 2334 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,518 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,859 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 3186 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,586 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,448 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,409 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 2033 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,537 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,743 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1828 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,796 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1234 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,092 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,992 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1025 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,411 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1117 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,401 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1114 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,003 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1764 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,640 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1072 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,761 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1041 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,754 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1299 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,427 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1005 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,265 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1173 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,957 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1034 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,644 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1428 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,950 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1147 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,663 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 3165 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,667 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,687 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,833 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,018 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1134 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,269 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1193 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,838 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1155 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,882 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 5355 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,050 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,095 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,440 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,997 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,861 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1464 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,173 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1170 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,112 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1871 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,436 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 2633 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,493 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,474 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1055 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,267 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 3273 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,534 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,431 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,369 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1076 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,388 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 1120 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,849 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder Large duplicate set. size = 2906 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,987 INFO 2026-06-08 09:10:06 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,347 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 2188 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,300 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,931 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1027 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,933 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1206 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,313 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1332 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,233 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1266 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,354 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1695 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,194 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1251 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,249 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1394 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,715 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1414 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,761 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 2599 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,331 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,575 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1308 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,763 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1321 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,311 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1963 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,470 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1941 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,899 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 2427 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,118 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,160 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1230 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,357 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1222 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,133 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1751 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,062 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 2623 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,626 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,978 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1407 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,546 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1286 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,117 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1301 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,176 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1328 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,357 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder Large duplicate set. size = 1043 INFO 2026-06-08 09:10:07 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,532 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1906 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,951 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1401 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,725 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1011 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,209 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1060 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,469 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1220 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,381 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1294 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,920 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1035 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,244 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1071 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,760 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1044 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,315 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1201 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,666 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 1295 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,949 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder Large duplicate set. size = 2256 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,636 INFO 2026-06-08 09:10:08 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,852 INFO 2026-06-08 09:10:26 MarkDuplicates Traversing fragment information and detecting duplicates. WARNING 2026-06-08 09:10:26 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered. INFO 2026-06-08 09:11:31 MarkDuplicates Sorting list of duplicate records. INFO 2026-06-08 09:11:40 MarkDuplicates After generateDuplicateIndexes freeMemory: 203830848; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:11:40 MarkDuplicates Marking 420422118 records as duplicates. INFO 2026-06-08 09:11:40 MarkDuplicates Found 15364373 optical duplicate clusters. INFO 2026-06-08 09:11:40 MarkDuplicates Reads are assumed to be ordered by: coordinate INFO 2026-06-08 09:11:56 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:21,878,603 INFO 2026-06-08 09:12:11 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:30s. Time for last 10,000,000: 14s. Last read position: chr1:45,829,454 INFO 2026-06-08 09:12:26 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:45s. Time for last 10,000,000: 15s. Last read position: chr1:148,569,296 INFO 2026-06-08 09:12:41 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:00s. Time for last 10,000,000: 15s. Last read position: chr1:163,147,335 INFO 2026-06-08 09:12:56 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:16s. Time for last 10,000,000: 15s. Last read position: chr1:228,264,270 INFO 2026-06-08 09:13:11 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:31s. Time for last 10,000,000: 15s. Last read position: chr2:32,916,406 INFO 2026-06-08 09:13:26 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:46s. Time for last 10,000,000: 14s. Last read position: chr2:85,389,817 INFO 2026-06-08 09:13:41 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:01s. Time for last 10,000,000: 15s. Last read position: chr2:176,122,985 INFO 2026-06-08 09:13:57 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:16s. Time for last 10,000,000: 15s. Last read position: chr2:215,408,378 INFO 2026-06-08 09:14:12 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:32s. Time for last 10,000,000: 15s. Last read position: chr2:237,348,643 INFO 2026-06-08 09:14:27 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 15s. Last read position: chr3:48,412,750 INFO 2026-06-08 09:14:43 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:02s. Time for last 10,000,000: 15s. Last read position: chr3:123,291,170 INFO 2026-06-08 09:14:58 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:18s. Time for last 10,000,000: 15s. Last read position: chr4:955,456 INFO 2026-06-08 09:15:14 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:34s. Time for last 10,000,000: 15s. Last read position: chr4:119,031,417 INFO 2026-06-08 09:15:29 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:49s. Time for last 10,000,000: 15s. Last read position: chr5:73,502,507 INFO 2026-06-08 09:15:45 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:05s. Time for last 10,000,000: 15s. Last read position: chr5:150,403,154 INFO 2026-06-08 09:16:00 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 15s. Last read position: chr6:7,891,642 INFO 2026-06-08 09:16:16 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:35s. Time for last 10,000,000: 15s. Last read position: chr6:33,069,214 INFO 2026-06-08 09:16:31 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:04:51s. Time for last 10,000,000: 15s. Last read position: chr6:132,322,719 INFO 2026-06-08 09:16:46 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:06s. Time for last 10,000,000: 15s. Last read position: chr7:5,529,358 INFO 2026-06-08 09:17:02 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:22s. Time for last 10,000,000: 15s. Last read position: chr7:76,302,901 INFO 2026-06-08 09:17:17 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 15s. Last read position: chr7:100,999,802 INFO 2026-06-08 09:17:32 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:05:52s. Time for last 10,000,000: 15s. Last read position: chr7:144,187,939 INFO 2026-06-08 09:17:48 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:07s. Time for last 10,000,000: 15s. Last read position: chr8:61,502,387 INFO 2026-06-08 09:18:03 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:23s. Time for last 10,000,000: 15s. Last read position: chr8:143,861,612 INFO 2026-06-08 09:18:18 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:38s. Time for last 10,000,000: 14s. Last read position: chr9:33,466,201 INFO 2026-06-08 09:18:33 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:06:53s. Time for last 10,000,000: 15s. Last read position: chr9:115,086,437 INFO 2026-06-08 09:18:48 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:08s. Time for last 10,000,000: 15s. Last read position: chr9:136,497,514 INFO 2026-06-08 09:19:04 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:24s. Time for last 10,000,000: 15s. Last read position: chr10:72,932,346 INFO 2026-06-08 09:19:19 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:07:39s. Time for last 10,000,000: 15s. Last read position: chr10:130,160,825 INFO 2026-06-08 09:19:34 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:07:53s. Time for last 10,000,000: 14s. Last read position: chr11:33,543,186 INFO 2026-06-08 09:19:48 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:08s. Time for last 10,000,000: 14s. Last read position: chr11:65,539,751 INFO 2026-06-08 09:20:04 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:23s. Time for last 10,000,000: 15s. Last read position: chr11:111,737,487 INFO 2026-06-08 09:20:19 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:08:38s. Time for last 10,000,000: 15s. Last read position: chr12:9,288,285 INFO 2026-06-08 09:20:34 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:08:54s. Time for last 10,000,000: 15s. Last read position: chr12:55,683,980 INFO 2026-06-08 09:20:49 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:09s. Time for last 10,000,000: 15s. Last read position: chr12:108,547,903 INFO 2026-06-08 09:21:04 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:09:24s. Time for last 10,000,000: 15s. Last read position: chr13:45,340,713 INFO 2026-06-08 09:21:19 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:09:39s. Time for last 10,000,000: 15s. Last read position: chr14:24,370,293 INFO 2026-06-08 09:21:34 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:09:54s. Time for last 10,000,000: 14s. Last read position: chr14:103,129,761 INFO 2026-06-08 09:21:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:08s. Time for last 10,000,000: 14s. Last read position: chr15:45,072,331 INFO 2026-06-08 09:22:04 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:10:24s. Time for last 10,000,000: 15s. Last read position: chr15:90,875,620 INFO 2026-06-08 09:22:19 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:10:39s. Time for last 10,000,000: 15s. Last read position: chr16:4,752,933 INFO 2026-06-08 09:22:34 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:10:54s. Time for last 10,000,000: 14s. Last read position: chr16:18,385,421 INFO 2026-06-08 09:22:49 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 15s. Last read position: chr16:30,751,144 INFO 2026-06-08 09:23:04 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:11:24s. Time for last 10,000,000: 15s. Last read position: chr16:82,639,420 INFO 2026-06-08 09:23:19 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:11:39s. Time for last 10,000,000: 15s. Last read position: chr17:7,513,122 INFO 2026-06-08 09:23:35 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:11:54s. Time for last 10,000,000: 15s. Last read position: chr17:40,331,179 INFO 2026-06-08 09:23:50 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:12:09s. Time for last 10,000,000: 15s. Last read position: chr17:50,187,911 INFO 2026-06-08 09:24:05 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:12:25s. Time for last 10,000,000: 15s. Last read position: chr17:50,190,547 INFO 2026-06-08 09:24:20 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:12:40s. Time for last 10,000,000: 15s. Last read position: chr17:50,194,720 INFO 2026-06-08 09:24:36 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:12:55s. Time for last 10,000,000: 15s. Last read position: chr17:50,198,169 INFO 2026-06-08 09:24:51 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:13:10s. Time for last 10,000,000: 15s. Last read position: chr17:75,925,431 INFO 2026-06-08 09:25:06 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:13:26s. Time for last 10,000,000: 15s. Last read position: chr18:63,410,296 INFO 2026-06-08 09:25:21 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:13:41s. Time for last 10,000,000: 15s. Last read position: chr19:10,092,215 INFO 2026-06-08 09:25:36 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:13:56s. Time for last 10,000,000: 14s. Last read position: chr19:19,654,578 INFO 2026-06-08 09:25:51 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:14:11s. Time for last 10,000,000: 14s. Last read position: chr19:42,292,622 INFO 2026-06-08 09:26:06 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:14:26s. Time for last 10,000,000: 15s. Last read position: chr19:55,377,965 INFO 2026-06-08 09:26:21 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:14:41s. Time for last 10,000,000: 15s. Last read position: chr20:36,548,114 INFO 2026-06-08 09:26:37 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:14:56s. Time for last 10,000,000: 15s. Last read position: chr20:64,267,886 INFO 2026-06-08 09:26:51 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:15:11s. Time for last 10,000,000: 14s. Last read position: chr21:46,432,151 INFO 2026-06-08 09:27:06 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:15:26s. Time for last 10,000,000: 14s. Last read position: chr22:40,277,998 INFO 2026-06-08 09:27:22 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:15:41s. Time for last 10,000,000: 15s. Last read position: chrX:49,119,705 INFO 2026-06-08 09:27:37 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:15:57s. Time for last 10,000,000: 15s. Last read position: chrX:154,357,466 INFO 2026-06-08 09:27:52 MarkDuplicates Writing complete. Closing input iterator. INFO 2026-06-08 09:27:52 MarkDuplicates Duplicate Index cleanup. INFO 2026-06-08 09:27:52 MarkDuplicates Getting Memory Stats. INFO 2026-06-08 09:27:52 MarkDuplicates Before output close freeMemory: 203824296; totalMemory: 234881024; maxMemory: 63585648640 INFO 2026-06-08 09:27:52 MarkDuplicates Closed outputs. Getting more Memory Stats. INFO 2026-06-08 09:27:52 MarkDuplicates After output close freeMemory: 104046040; totalMemory: 134217728; maxMemory: 63585648640 [Mon Jun 08 09:27:52 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 41.56 minutes. Runtime.totalMemory()=134217728 Tool returned: 0 ls: *cram: No such file or directory ls: *.crai: No such file or directory