File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/db5d3571220e91f3803c9209cd443c/.command.log
Size
3.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/db5d3571220e91f3803c9209cd443c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/db5d3571220e91f3803c9209cd443c/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/70d1ec1b59a5ab9a0d105d00642a6c/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/2160791b8504ce9db420c721badb39/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
E2F3--TMEM241
starfusion
arriba
NVL--CNIH4
starfusion
STX16--NPEPL1
starfusion
arriba
ESR1--SCAF8
starfusion
TMEM241--E2F3
starfusion
arriba
BMS1P7--PTPN20
starfusion
TLK2P1--AC110079.1
starfusion
GOLGA6L10--GOLGA2P6
starfusion
TVP23C--CDRT4
starfusion
arriba
RBM14--RBM4
arriba
ZNF737--AC010329.5
arriba
ZNF528--ZNF610
arriba
ZNF528--ZNF880
arriba
AP001347.1--ANKRD20A11P
arriba

  0%|          | 0/14 [00:00<?, ?it/s]
Processing E2F3--TMEM241:   0%|          | 0/14 [00:00<?, ?it/s]
Processing E2F3--TMEM241:   7%|▋         | 1/14 [00:00<00:01,  9.26it/s]
Processing NVL--CNIH4:   7%|▋         | 1/14 [00:00<00:01,  9.26it/s]   
Processing NVL--CNIH4:  14%|█▍        | 2/14 [00:00<00:01,  9.49it/s]
Processing STX16--NPEPL1:  14%|█▍        | 2/14 [00:00<00:01,  9.49it/s]
Processing STX16--NPEPL1:  21%|██▏       | 3/14 [00:00<00:01,  9.57it/s]
Processing ESR1--SCAF8:  21%|██▏       | 3/14 [00:00<00:01,  9.57it/s]  
Processing ESR1--SCAF8:  29%|██▊       | 4/14 [00:00<00:01,  9.60it/s]
Processing TMEM241--E2F3:  29%|██▊       | 4/14 [00:00<00:01,  9.60it/s]
Processing TMEM241--E2F3:  36%|███▌      | 5/14 [00:00<00:00,  9.63it/s]
Processing BMS1P7--PTPN20:  36%|███▌      | 5/14 [00:00<00:00,  9.63it/s]
Processing BMS1P7--PTPN20:  43%|████▎     | 6/14 [00:00<00:00,  9.64it/s]
Processing TLK2P1--AC110079.1:  43%|████▎     | 6/14 [00:00<00:00,  9.64it/s]
Processing TLK2P1--AC110079.1:  50%|█████     | 7/14 [00:00<00:00,  9.65it/s]
Processing GOLGA6L10--GOLGA2P6:  50%|█████     | 7/14 [00:00<00:00,  9.65it/s]
Processing GOLGA6L10--GOLGA2P6:  57%|█████▋    | 8/14 [00:00<00:00,  9.65it/s]
Processing TVP23C--CDRT4:  57%|█████▋    | 8/14 [00:00<00:00,  9.65it/s]      
Processing TVP23C--CDRT4:  64%|██████▍   | 9/14 [00:00<00:00,  9.65it/s]
Processing RBM14--RBM4:  64%|██████▍   | 9/14 [00:00<00:00,  9.65it/s]  
Processing RBM14--RBM4:  71%|███████▏  | 10/14 [00:01<00:00,  9.66it/s]
Processing ZNF737--AC010329.5:  71%|███████▏  | 10/14 [00:01<00:00,  9.66it/s]
Processing ZNF737--AC010329.5:  79%|███████▊  | 11/14 [00:01<00:00,  9.66it/s]
Processing ZNF528--ZNF610:  79%|███████▊  | 11/14 [00:01<00:00,  9.66it/s]    
Processing ZNF528--ZNF610:  86%|████████▌ | 12/14 [00:01<00:00,  9.66it/s]
Processing ZNF528--ZNF880:  86%|████████▌ | 12/14 [00:01<00:00,  9.66it/s]
Processing ZNF528--ZNF880:  93%|█████████▎| 13/14 [00:01<00:00,  9.66it/s]
Processing AP001347.1--ANKRD20A11P:  93%|█████████▎| 13/14 [00:01<00:00,  9.66it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 14/14 [00:01<00:00,  9.66it/s]
Processing AP001347.1--ANKRD20A11P: 100%|██████████| 14/14 [00:01<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory