File Info
- Filename
- aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.fusions.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/db5d3571220e91f3803c9209cd443c/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.fusions.csv
- Size
- 3.3 KB
- Task
- NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1)
- Attempt
Content
View in new tab| Fusion | Databases | Score | Explained score | arriba | starfusion |
| E2F3--TMEM241 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr6:20403832#chr18:23377671,reading-frame: in-frame,type: translocation,split_reads1: 110,split_reads2: 185,discordant_mates: 1,coverage1: 1326,coverage2: 804,confidence: high | position: chr6:20403832:+#chr18:23377671:-,junction_reads: 309,spanning_reads: 0,ffmp: 1.0411 | |
| NVL--CNIH4 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr1:224268034:-#chr1:224365879:+,junction_reads: 32,spanning_reads: 2,ffmp: 0.1145 | ||
| STX16--NPEPL1 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr20:58673711#chr20:58691724,reading-frame: out-of-frame,type: deletion/read-through,split_reads1: 98,split_reads2: 107,discordant_mates: 4,coverage1: 1834,coverage2: 589,confidence: high | position: chr20:58673711:+#chr20:58691724:+,junction_reads: 22,spanning_reads: 0,ffmp: 0.0741 | |
| ESR1--SCAF8 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr6:151702005:+#chr6:154773989:+,junction_reads: 14,spanning_reads: 1,ffmp: 0.0506 | ||
| TMEM241--E2F3 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * () | position: chr18:23384990#chr6:20479846,reading-frame: stop-codon,type: translocation,split_reads1: 7,split_reads2: 5,discordant_mates: 0,coverage1: 81,coverage2: 346,confidence: high | position: chr18:23384990:-#chr6:20479846:+,junction_reads: 12,spanning_reads: 0,ffmp: 0.0404 | |
| BMS1P7--PTPN20 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr10:48050282:-#chr10:46940623:+,junction_reads: 10,spanning_reads: 0,ffmp: 0.0337 | ||
| TLK2P1--AC110079.1 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr17:34039043:-#chr4:118595912:+,junction_reads: 9,spanning_reads: 0,ffmp: 0.0263 | ||
| GOLGA6L10--GOLGA2P6 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr15:82347510:-#chr10:30370881:-,junction_reads: 9,spanning_reads: 0,ffmp: 0.0303 | ||
| TVP23C--CDRT4 | FusionGDB2 | 0.125 | 0.5 * (0.125 + 0.125) + 0.5 * (0.000) | position: chr17:15503098#chr17:15440285,reading-frame: stop-codon,type: deletion/read-through,split_reads1: 75,split_reads2: 42,discordant_mates: 1,coverage1: 913,coverage2: 438,confidence: high | position: chr17:15503098:-#chr17:15440285:-,junction_reads: 8,spanning_reads: 0,ffmp: 0.027 |
| RBM14--RBM4 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr11:66617057#chr11:66646027,reading-frame: in-frame,type: deletion/read-through,split_reads1: 29,split_reads2: 36,discordant_mates: 0,coverage1: 4799,coverage2: 4147,confidence: high | |
| ZNF737--AC010329.5 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:20565638#chr19:20691340,reading-frame: out-of-frame,type: inversion,split_reads1: 22,split_reads2: 30,discordant_mates: 1,coverage1: 3126,coverage2: 86,confidence: high | ||
| ZNF528--ZNF610 | FusionGDB2 | 0.062 | 0.5 * (0.125) + 0.5 * (0.000) | position: chr19:52406643#chr19:52369560,reading-frame: out-of-frame,type: duplication,split_reads1: 16,split_reads2: 3,discordant_mates: 0,coverage1: 2695,coverage2: 3,confidence: high | |
| ZNF528--ZNF880 | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr19:52406643#chr19:52369560,reading-frame: out-of-frame,type: duplication,split_reads1: 16,split_reads2: 3,discordant_mates: 0,coverage1: 2695,coverage2: 3,confidence: high | ||
| AP001347.1--ANKRD20A11P | 0.062 | 0.5 * (0.125) + 0.5 * () | position: chr21:14027597#chr21:13970110,reading-frame: .,type: inversion,split_reads1: 8,split_reads2: 4,discordant_mates: 2,coverage1: 468,coverage2: 23,confidence: high |
15 rows