#!/bin/bash -euo pipefail
samtools \
    index \
    -@ 1 \
     \
    aih-tih-sc-2ca847-R1_A23WJ53LT4_1.star_alignment.Aligned.sortedByCoord.out.cram

cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_INDEX_ALIGNMENT_CRAM":
    samtools: $(echo $(samtools --version 2>&1) | sed 's/^.*samtools //; s/Using.*$//')
END_VERSIONS