File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/03fbe6e345a814feccb132ae7bdefb/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/36741a3703fde51d1ce5e455b18e9c/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/03fbe6e345a814feccb132ae7bdefb/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/03fbe6e345a814feccb132ae7bdefb/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/9446de7408b0a778467528f34be9ec/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 333480689
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	333480689
Known Splicing Events:	330566326
Partial Novel Splicing Events:	1546150
Novel Splicing Events:	1238795
Filtered Splicing Events:	129418

Total splicing  Junctions:	468205
Known Splicing Junctions:	253990
Partial Novel Splicing Junctions:	114455
Novel Splicing Junctions:	99760

===================================================================
Create BED file ...
Create Interact file ...