Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/df311d7f77345f1256e78acb2d63c4/aih-tih-sc-669302-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/9d1d603c45d86514f2331e35a7e97a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/9d1d603c45d86514f2331e35a7e97a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/c6cca854549ac3e6df2e499a0fdc5e/aih-tih-sc-669302-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory