Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/c82f3abe66dde4df84f5b367dc575a/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/c09c2746a81ece39c3e0e564bd8fe6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/c09c2746a81ece39c3e0e564bd8fe6/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 294408217
unpaired = 4343802
MERGED PAIRED END READS = 294408217
MATES PROCESSED = 593160236
TOTAL READS     = 298752019
DISTINCT READS  = 9.01564e+07
DISTINCT COUNTS = 811
MAX COUNT       = 744938
COUNTS OF 1     = 3.02954e+07
MAX TERMS       = 100
OBSERVED COUNTS (744939)
1	30295406
2	19650264
3	13211818
4	8691693
5	5653290
6	3683773
7	2430388
8	1636352
9	1129087
10	800569
11	582342
12	434555
13	329203
14	256144
15	202074
16	161913
17	130706
18	106560
19	88487
20	73792
21	62536
22	53646
23	45757
24	39959
25	34281
26	30682
27	26630
28	23423
29	21174
30	18751
31	17172
32	15257
33	13768
34	12751
35	11449
36	10384
37	9559
38	8879
39	8066
40	7436
41	6879
42	6348
43	6005
44	5611
45	5151
46	4732
47	4509
48	4173
49	3863
50	3749
51	3440
52	3192
53	2984
54	2842
55	2685
56	2633
57	2447
58	2418
59	2307
60	2196
61	2006
62	1868
63	1784
64	1678
65	1651
66	1605
67	1419
68	1374
69	1316
70	1294
71	1215
72	1182
73	1163
74	1055
75	1069
76	1011
77	1000
78	935
79	910
80	897
81	859
82	822
83	737
84	760
85	707
86	687
87	667
88	657
89	578
90	604
91	594
92	571
93	538
94	552
95	505
96	473
97	456
98	461
99	468
100	437
101	405
102	416
103	412
104	398
105	346
106	381
107	355
108	366
109	314
110	312
111	271
112	281
113	342
114	300
115	255
116	289
117	254
118	250
119	271
120	232
121	208
122	219
123	229
124	239
125	208
126	216
127	184
128	190
129	192
130	196
131	187
132	191
133	186
134	158
135	158
136	169
137	150
138	150
139	143
140	162
141	145
142	140
143	139
144	137
145	121
146	138
147	121
148	111
149	132
150	111
151	116
152	125
153	124
154	145
155	95
156	124
157	87
158	106
159	99
160	94
161	88
162	128
163	112
164	106
165	92
166	103
167	79
168	79
169	82
170	59
171	73
172	66
173	76
174	70
175	81
176	71
177	70
178	74
179	73
180	71
181	64
182	54
183	77
184	71
185	75
186	62
187	46
188	53
189	64
190	53
191	58
192	62
193	52
194	53
195	60
196	39
197	44
198	57
199	45
200	53
201	52
202	50
203	49
204	54
205	40
206	43
207	48
208	40
209	46
210	43
211	41
212	47
213	47
214	39
215	44
216	33
217	39
218	32
219	37
220	22
221	48
222	35
223	17
224	43
225	38
226	27
227	34
228	32
229	32
230	33
231	38
232	29
233	30
234	29
235	24
236	20
237	20
238	27
239	26
240	27
241	31
242	18
243	42
244	28
245	28
246	29
247	24
248	27
249	22
250	23
251	22
252	21
253	27
254	27
255	24
256	27
257	32
258	20
259	21
260	22
261	18
262	25
263	17
264	29
265	16
266	15
267	23
268	20
269	26
270	20
271	12
272	18
273	16
274	20
275	17
276	9
277	24
278	13
279	13
280	18
281	17
282	15
283	11
284	17
285	18
286	12
287	13
288	12
289	14
290	20
291	12
292	11
293	9
294	10
295	19
296	13
297	20
298	12
299	13
300	11
301	14
302	8
303	14
304	9
305	16
306	13
307	9
308	13
309	10
310	13
311	15
312	27
313	12
314	14
315	10
316	7
317	9
318	9
319	15
320	13
321	6
322	12
323	8
324	13
325	12
326	12
327	8
328	8
329	7
330	8
331	13
332	11
333	8
334	18
335	14
336	10
337	8
338	15
339	12
340	8
341	4
342	7
343	5
344	4
345	6
346	8
347	7
348	13
349	9
350	9
351	12
352	11
353	10
354	12
355	6
356	9
357	6
358	9
359	4
360	9
361	6
362	8
363	9
364	6
365	5
366	13
367	6
368	4
369	3
370	2
371	10
372	10
373	7
374	6
375	6
376	4
377	4
378	7
379	9
380	8
381	8
382	7
383	9
384	4
385	9
386	4
387	4
388	3
389	5
390	6
391	5
392	8
393	8
394	9
395	2
396	3
397	4
398	4
399	9
400	5
401	4
402	9
403	10
404	9
405	6
406	1
407	5
408	7
409	4
410	5
411	3
412	4
413	4
414	7
415	4
416	3
417	3
418	1
420	4
421	7
422	9
423	8
424	5
425	7
426	9
427	5
428	4
429	3
430	3
431	2
432	3
433	4
434	1
435	6
436	3
437	2
438	7
439	8
440	1
441	2
442	5
443	6
444	7
445	8
446	4
447	5
448	5
449	5
450	1
451	2
452	2
453	2
454	4
455	4
456	2
457	2
458	2
460	4
461	3
462	2
463	3
464	1
465	3
466	2
468	2
469	3
470	3
471	2
472	5
473	1
474	3
475	3
476	1
478	4
479	5
480	2
481	3
482	2
483	4
484	4
485	2
486	4
487	4
488	3
489	2
490	3
492	7
493	2
494	1
495	2
496	3
499	5
500	1
501	3
502	5
503	2
504	1
505	3
506	2
507	3
508	2
509	2
510	1
511	1
512	2
513	4
514	2
515	1
516	3
517	1
518	3
521	3
522	1
523	2
524	4
525	1
527	5
528	3
529	1
530	2
531	2
533	2
534	1
537	1
541	3
543	4
545	2
546	1
547	1
548	1
549	2
550	1
551	3
552	1
554	1
555	3
556	2
557	1
558	5
559	1
560	5
562	1
563	1
564	3
565	1
566	1
567	2
568	1
569	1
570	2
571	1
572	3
573	5
574	2
575	3
576	1
577	2
578	2
579	1
580	1
581	1
583	2
584	1
585	1
587	2
588	1
589	2
590	2
591	1
592	3
593	3
594	1
596	1
597	2
598	1
600	2
601	1
602	1
603	4
605	1
606	3
607	1
610	1
613	1
615	1
617	3
619	3
620	1
621	1
624	2
625	1
626	2
628	2
629	2
630	1
631	2
632	4
634	1
635	1
636	2
637	2
638	2
640	3
641	2
642	2
644	1
645	2
646	2
647	2
648	1
649	1
651	2
652	1
656	3
659	1
661	1
662	1
666	4
667	4
668	3
670	2
671	2
672	3
673	1
676	1
677	2
681	2
684	2
685	2
688	2
693	2
694	1
696	1
697	1
698	1
699	1
701	1
702	1
703	2
705	1
706	2
707	1
708	2
709	1
710	2
711	1
712	1
713	1
714	1
718	1
719	1
720	2
722	1
723	1
725	2
728	2
731	2
735	1
738	1
744	1
745	1
751	1
752	1
754	1
755	1
756	2
761	1
764	1
770	1
771	1
781	1
784	1
785	1
789	1
794	1
795	1
796	1
797	2
800	2
803	1
807	1
808	1
811	1
813	2
817	1
823	1
831	1
833	2
834	1
837	2
838	1
840	1
844	1
852	1
854	2
876	1
881	1
882	1
885	1
888	1
889	2
891	2
892	1
896	1
900	1
901	1
902	1
903	2
915	3
925	2
927	1
931	1
946	1
947	1
949	2
951	2
957	2
959	1
963	1
981	1
984	1
989	1
990	1
994	1
996	2
999	2
1000	1
1003	2
1004	1
1013	1
1018	2
1026	1
1029	2
1038	1
1041	1
1045	1
1047	2
1048	1
1057	1
1060	1
1062	2
1065	1
1070	1
1071	1
1075	1
1118	1
1130	1
1133	1
1134	1
1143	1
1145	1
1146	1
1148	1
1153	1
1155	1
1159	1
1175	1
1184	1
1201	1
1207	1
1222	2
1236	1
1246	2
1253	1
1259	1
1275	1
1293	1
1295	1
1309	1
1317	1
1328	1
1346	1
1353	2
1357	1
1366	1
1395	1
1399	1
1431	1
1446	1
1456	1
1460	1
1468	1
1595	1
1620	1
1634	1
1668	1
1689	1
1731	1
1751	1
1766	1
1769	1
1781	1
1821	1
1848	1
1909	1
1994	1
2141	1
2159	1
2287	1
2328	1
2380	1
2426	1
2877	1
3192	1
3511	1
5459	1
6941	1
7917	1
7958	1
26080	1
744938	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
......_.................................................................
.............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]