Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/5c36837c638fc793025d7601003bd6/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/c0af8dd5027e6e69beb2b8ae04f292/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/c0af8dd5027e6e69beb2b8ae04f292/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/f24ca14c9bc5351d9befb2fab27def/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (18180800) splicing reads. 281143 splicing junctions. 193146 known splicing junctions. 87997 novel splicing junctions.
sampling 10% (36361600) splicing reads. 347516 splicing junctions. 206263 known splicing junctions. 141253 novel splicing junctions.
sampling 15% (54542400) splicing reads. 395194 splicing junctions. 213219 known splicing junctions. 181975 novel splicing junctions.
sampling 20% (72723201) splicing reads. 432619 splicing junctions. 217810 known splicing junctions. 214809 novel splicing junctions.
sampling 25% (90904001) splicing reads. 463615 splicing junctions. 221132 known splicing junctions. 242483 novel splicing junctions.
sampling 30% (109084801) splicing reads. 489592 splicing junctions. 223651 known splicing junctions. 265941 novel splicing junctions.
sampling 35% (127265602) splicing reads. 511995 splicing junctions. 225677 known splicing junctions. 286318 novel splicing junctions.
sampling 40% (145446402) splicing reads. 531579 splicing junctions. 227286 known splicing junctions. 304293 novel splicing junctions.
sampling 45% (163627202) splicing reads. 548340 splicing junctions. 228568 known splicing junctions. 319772 novel splicing junctions.
sampling 50% (181808003) splicing reads. 563027 splicing junctions. 229686 known splicing junctions. 333341 novel splicing junctions.
sampling 55% (199988803) splicing reads. 576024 splicing junctions. 230637 known splicing junctions. 345387 novel splicing junctions.
sampling 60% (218169603) splicing reads. 587405 splicing junctions. 231440 known splicing junctions. 355965 novel splicing junctions.
sampling 65% (236350403) splicing reads. 597251 splicing junctions. 232170 known splicing junctions. 365081 novel splicing junctions.
sampling 70% (254531204) splicing reads. 606044 splicing junctions. 232768 known splicing junctions. 373276 novel splicing junctions.
sampling 75% (272712004) splicing reads. 613744 splicing junctions. 233293 known splicing junctions. 380451 novel splicing junctions.
sampling 80% (290892804) splicing reads. 620495 splicing junctions. 233741 known splicing junctions. 386754 novel splicing junctions.
sampling 85% (309073605) splicing reads. 626189 splicing junctions. 234096 known splicing junctions. 392093 novel splicing junctions.
sampling 90% (327254405) splicing reads. 631128 splicing junctions. 234425 known splicing junctions. 396703 novel splicing junctions.
sampling 95% (345435205) splicing reads. 635204 splicing junctions. 234701 known splicing junctions. 400503 novel splicing junctions.
sampling 100% (363616006) splicing reads. 638379 splicing junctions. 234872 known splicing junctions. 403507 novel splicing junctions.
null device 
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