Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/e03d778989310adaea80d7dc46c6ab/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/569a4dc0356da0ca91a7e947773bc0/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/569a4dc0356da0ca91a7e947773bc0/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
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Processed 340000000 records
paired = 168787009
unpaired = 2557333
MERGED PAIRED END READS = 168787009
MATES PROCESSED = 340131351
TOTAL READS = 171344342
DISTINCT READS = 5.54406e+07
DISTINCT COUNTS = 717
MAX COUNT = 464068
COUNTS OF 1 = 1.98043e+07
MAX TERMS = 100
OBSERVED COUNTS (464069)
1 19804341
2 12368978
3 8075410
4 5173301
5 3276622
6 2079044
7 1338686
8 881338
9 592588
10 410833
11 294977
12 215437
13 162149
14 123594
15 96911
16 76745
17 62187
18 49827
19 41278
20 34138
21 28850
22 24154
23 20723
24 18010
25 15560
26 13741
27 12170
28 10680
29 9737
30 8800
31 7876
32 7196
33 6518
34 5783
35 5328
36 4872
37 4513
38 4113
39 3807
40 3535
41 3241
42 3034
43 2816
44 2583
45 2427
46 2359
47 2164
48 1974
49 1897
50 1742
51 1635
52 1554
53 1436
54 1421
55 1244
56 1313
57 1198
58 1182
59 1094
60 1018
61 983
62 953
63 844
64 823
65 824
66 715
67 682
68 676
69 649
70 573
71 675
72 582
73 541
74 523
75 531
76 504
77 440
78 439
79 464
80 415
81 425
82 416
83 409
84 372
85 335
86 319
87 354
88 333
89 281
90 316
91 288
92 267
93 286
94 254
95 260
96 277
97 226
98 254
99 237
100 220
101 209
102 208
103 208
104 191
105 175
106 175
107 176
108 158
109 141
110 176
111 142
112 143
113 153
114 148
115 114
116 120
117 127
118 136
119 133
120 119
121 122
122 121
123 117
124 120
125 110
126 91
127 107
128 97
129 92
130 86
131 90
132 100
133 94
134 78
135 89
136 78
137 67
138 66
139 85
140 71
141 87
142 81
143 70
144 60
145 80
146 88
147 65
148 67
149 71
150 65
151 60
152 54
153 70
154 45
155 59
156 59
157 51
158 52
159 44
160 49
161 44
162 39
163 48
164 49
165 53
166 43
167 48
168 54
169 44
170 36
171 47
172 30
173 39
174 28
175 33
176 38
177 44
178 39
179 42
180 30
181 37
182 34
183 32
184 36
185 34
186 29
187 30
188 34
189 41
190 37
191 33
192 25
193 17
194 27
195 28
196 26
197 22
198 26
199 21
200 24
201 25
202 21
203 28
204 20
205 27
206 17
207 22
208 30
209 29
210 18
211 18
212 12
213 17
214 18
215 18
216 27
217 20
218 20
219 13
220 18
221 11
222 10
223 22
224 15
225 18
226 17
227 20
228 12
229 22
230 16
231 12
232 15
233 10
234 9
235 18
236 17
237 18
238 8
239 17
240 15
241 13
242 17
243 7
244 7
245 13
246 9
247 14
248 16
249 13
250 10
251 15
252 6
253 8
254 15
255 9
256 10
257 9
258 10
259 11
260 5
261 10
262 16
263 15
264 12
265 13
266 11
267 6
268 5
269 11
270 15
271 5
272 5
273 9
274 14
275 10
276 4
277 10
278 10
279 7
280 10
281 11
282 4
283 11
284 7
285 6
286 9
287 8
288 5
289 10
290 11
291 9
292 6
293 6
294 4
295 8
296 7
297 7
298 8
299 6
300 6
301 2
302 8
303 10
304 5
305 11
306 7
307 9
308 8
309 8
310 8
311 3
312 5
313 5
314 8
315 8
316 5
317 7
318 5
319 10
320 9
321 7
322 2
323 6
324 9
325 2
326 6
327 4
328 12
329 6
330 6
331 6
332 7
333 10
334 5
335 6
336 6
337 5
338 3
339 3
340 4
341 3
342 2
343 6
344 5
345 3
346 12
347 5
348 8
349 8
350 7
351 6
352 1
353 4
354 5
355 7
356 7
357 4
358 1
359 4
360 3
361 7
362 2
363 3
364 2
365 1
366 5
367 4
368 1
369 1
370 3
371 1
372 4
373 3
374 6
375 3
376 2
377 7
379 2
381 1
382 1
383 4
384 4
385 2
386 6
387 3
388 2
389 5
390 2
391 7
392 2
393 5
394 1
395 2
396 5
397 3
398 5
399 1
401 4
402 3
403 3
404 5
406 4
407 1
408 3
409 2
411 2
412 3
413 3
414 1
415 2
416 2
417 1
418 3
419 2
421 2
422 2
423 1
424 1
425 2
426 3
427 1
428 3
429 5
430 2
431 4
432 2
433 1
435 2
436 3
437 5
438 3
439 1
441 1
442 5
443 1
444 1
445 2
446 2
447 1
448 4
449 2
450 4
451 1
452 2
453 2
454 1
455 1
456 6
459 6
460 2
461 2
462 5
464 1
465 1
466 1
467 1
468 1
471 2
472 2
473 2
474 1
475 3
476 3
477 4
478 3
479 2
480 1
481 1
482 2
483 2
484 1
485 2
487 1
490 3
494 4
495 3
496 1
498 1
499 2
502 1
504 1
505 3
506 2
507 3
508 2
509 1
510 1
511 1
512 1
513 1
514 1
515 1
516 1
517 3
518 3
519 1
520 1
521 3
522 2
523 1
524 1
531 1
532 1
534 1
536 1
537 1
538 1
540 1
541 1
542 1
545 1
548 2
549 1
550 1
551 1
552 1
553 1
554 2
555 1
556 4
558 1
559 2
562 1
567 2
568 2
569 1
570 1
572 1
573 2
575 2
577 3
580 1
581 1
582 1
584 1
587 2
588 1
591 1
593 1
595 1
599 1
600 3
601 1
602 2
603 1
604 1
606 1
610 1
611 1
612 2
613 1
614 2
615 1
616 3
617 1
618 1
619 1
620 2
622 1
623 2
624 1
625 2
628 1
629 1
630 1
635 1
637 1
644 3
645 1
646 1
647 1
654 2
655 1
656 1
657 1
660 1
663 2
667 1
668 1
670 1
672 2
677 1
678 1
679 2
680 2
684 1
685 3
690 1
694 1
695 1
697 1
701 1
702 1
705 2
708 2
709 1
714 2
720 1
721 1
722 1
724 1
726 1
730 2
734 1
735 2
736 3
737 1
741 1
743 1
744 1
746 1
748 1
749 1
752 1
754 1
756 1
759 1
760 1
767 1
771 1
772 1
777 3
781 1
785 1
788 1
789 1
790 1
795 1
796 1
797 1
798 1
811 1
814 1
816 1
821 1
822 1
825 1
826 1
834 1
838 1
839 1
843 1
845 1
859 1
864 1
870 2
871 1
872 1
873 1
885 1
887 1
896 1
899 1
902 1
903 1
909 1
913 2
917 1
919 1
924 1
929 1
931 1
943 1
959 1
966 1
968 1
973 1
975 3
978 1
1018 1
1027 1
1041 1
1048 1
1056 1
1064 1
1070 1
1080 1
1151 1
1156 1
1157 1
1162 1
1175 1
1182 1
1198 1
1210 2
1237 2
1241 1
1259 1
1270 1
1280 1
1308 1
1317 1
1359 1
1389 1
1405 1
1410 1
1436 2
1519 1
1536 1
1644 1
1646 1
1693 1
1732 1
1800 1
1973 1
2067 1
2188 1
2262 1
2280 1
2779 1
3145 1
3973 1
3995 1
4367 1
5599 1
17392 1
464068 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
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[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]