Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/e03d778989310adaea80d7dc46c6ab/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/569a4dc0356da0ca91a7e947773bc0/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/569a4dc0356da0ca91a7e947773bc0/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records paired = 168787009 unpaired = 2557333 MERGED PAIRED END READS = 168787009 MATES PROCESSED = 340131351 TOTAL READS = 171344342 DISTINCT READS = 5.54406e+07 DISTINCT COUNTS = 717 MAX COUNT = 464068 COUNTS OF 1 = 1.98043e+07 MAX TERMS = 100 OBSERVED COUNTS (464069) 1 19804341 2 12368978 3 8075410 4 5173301 5 3276622 6 2079044 7 1338686 8 881338 9 592588 10 410833 11 294977 12 215437 13 162149 14 123594 15 96911 16 76745 17 62187 18 49827 19 41278 20 34138 21 28850 22 24154 23 20723 24 18010 25 15560 26 13741 27 12170 28 10680 29 9737 30 8800 31 7876 32 7196 33 6518 34 5783 35 5328 36 4872 37 4513 38 4113 39 3807 40 3535 41 3241 42 3034 43 2816 44 2583 45 2427 46 2359 47 2164 48 1974 49 1897 50 1742 51 1635 52 1554 53 1436 54 1421 55 1244 56 1313 57 1198 58 1182 59 1094 60 1018 61 983 62 953 63 844 64 823 65 824 66 715 67 682 68 676 69 649 70 573 71 675 72 582 73 541 74 523 75 531 76 504 77 440 78 439 79 464 80 415 81 425 82 416 83 409 84 372 85 335 86 319 87 354 88 333 89 281 90 316 91 288 92 267 93 286 94 254 95 260 96 277 97 226 98 254 99 237 100 220 101 209 102 208 103 208 104 191 105 175 106 175 107 176 108 158 109 141 110 176 111 142 112 143 113 153 114 148 115 114 116 120 117 127 118 136 119 133 120 119 121 122 122 121 123 117 124 120 125 110 126 91 127 107 128 97 129 92 130 86 131 90 132 100 133 94 134 78 135 89 136 78 137 67 138 66 139 85 140 71 141 87 142 81 143 70 144 60 145 80 146 88 147 65 148 67 149 71 150 65 151 60 152 54 153 70 154 45 155 59 156 59 157 51 158 52 159 44 160 49 161 44 162 39 163 48 164 49 165 53 166 43 167 48 168 54 169 44 170 36 171 47 172 30 173 39 174 28 175 33 176 38 177 44 178 39 179 42 180 30 181 37 182 34 183 32 184 36 185 34 186 29 187 30 188 34 189 41 190 37 191 33 192 25 193 17 194 27 195 28 196 26 197 22 198 26 199 21 200 24 201 25 202 21 203 28 204 20 205 27 206 17 207 22 208 30 209 29 210 18 211 18 212 12 213 17 214 18 215 18 216 27 217 20 218 20 219 13 220 18 221 11 222 10 223 22 224 15 225 18 226 17 227 20 228 12 229 22 230 16 231 12 232 15 233 10 234 9 235 18 236 17 237 18 238 8 239 17 240 15 241 13 242 17 243 7 244 7 245 13 246 9 247 14 248 16 249 13 250 10 251 15 252 6 253 8 254 15 255 9 256 10 257 9 258 10 259 11 260 5 261 10 262 16 263 15 264 12 265 13 266 11 267 6 268 5 269 11 270 15 271 5 272 5 273 9 274 14 275 10 276 4 277 10 278 10 279 7 280 10 281 11 282 4 283 11 284 7 285 6 286 9 287 8 288 5 289 10 290 11 291 9 292 6 293 6 294 4 295 8 296 7 297 7 298 8 299 6 300 6 301 2 302 8 303 10 304 5 305 11 306 7 307 9 308 8 309 8 310 8 311 3 312 5 313 5 314 8 315 8 316 5 317 7 318 5 319 10 320 9 321 7 322 2 323 6 324 9 325 2 326 6 327 4 328 12 329 6 330 6 331 6 332 7 333 10 334 5 335 6 336 6 337 5 338 3 339 3 340 4 341 3 342 2 343 6 344 5 345 3 346 12 347 5 348 8 349 8 350 7 351 6 352 1 353 4 354 5 355 7 356 7 357 4 358 1 359 4 360 3 361 7 362 2 363 3 364 2 365 1 366 5 367 4 368 1 369 1 370 3 371 1 372 4 373 3 374 6 375 3 376 2 377 7 379 2 381 1 382 1 383 4 384 4 385 2 386 6 387 3 388 2 389 5 390 2 391 7 392 2 393 5 394 1 395 2 396 5 397 3 398 5 399 1 401 4 402 3 403 3 404 5 406 4 407 1 408 3 409 2 411 2 412 3 413 3 414 1 415 2 416 2 417 1 418 3 419 2 421 2 422 2 423 1 424 1 425 2 426 3 427 1 428 3 429 5 430 2 431 4 432 2 433 1 435 2 436 3 437 5 438 3 439 1 441 1 442 5 443 1 444 1 445 2 446 2 447 1 448 4 449 2 450 4 451 1 452 2 453 2 454 1 455 1 456 6 459 6 460 2 461 2 462 5 464 1 465 1 466 1 467 1 468 1 471 2 472 2 473 2 474 1 475 3 476 3 477 4 478 3 479 2 480 1 481 1 482 2 483 2 484 1 485 2 487 1 490 3 494 4 495 3 496 1 498 1 499 2 502 1 504 1 505 3 506 2 507 3 508 2 509 1 510 1 511 1 512 1 513 1 514 1 515 1 516 1 517 3 518 3 519 1 520 1 521 3 522 2 523 1 524 1 531 1 532 1 534 1 536 1 537 1 538 1 540 1 541 1 542 1 545 1 548 2 549 1 550 1 551 1 552 1 553 1 554 2 555 1 556 4 558 1 559 2 562 1 567 2 568 2 569 1 570 1 572 1 573 2 575 2 577 3 580 1 581 1 582 1 584 1 587 2 588 1 591 1 593 1 595 1 599 1 600 3 601 1 602 2 603 1 604 1 606 1 610 1 611 1 612 2 613 1 614 2 615 1 616 3 617 1 618 1 619 1 620 2 622 1 623 2 624 1 625 2 628 1 629 1 630 1 635 1 637 1 644 3 645 1 646 1 647 1 654 2 655 1 656 1 657 1 660 1 663 2 667 1 668 1 670 1 672 2 677 1 678 1 679 2 680 2 684 1 685 3 690 1 694 1 695 1 697 1 701 1 702 1 705 2 708 2 709 1 714 2 720 1 721 1 722 1 724 1 726 1 730 2 734 1 735 2 736 3 737 1 741 1 743 1 744 1 746 1 748 1 749 1 752 1 754 1 756 1 759 1 760 1 767 1 771 1 772 1 777 3 781 1 785 1 788 1 789 1 790 1 795 1 796 1 797 1 798 1 811 1 814 1 816 1 821 1 822 1 825 1 826 1 834 1 838 1 839 1 843 1 845 1 859 1 864 1 870 2 871 1 872 1 873 1 885 1 887 1 896 1 899 1 902 1 903 1 909 1 913 2 917 1 919 1 924 1 929 1 931 1 943 1 959 1 966 1 968 1 973 1 975 3 978 1 1018 1 1027 1 1041 1 1048 1 1056 1 1064 1 1070 1 1080 1 1151 1 1156 1 1157 1 1162 1 1175 1 1182 1 1198 1 1210 2 1237 2 1241 1 1259 1 1270 1 1280 1 1308 1 1317 1 1359 1 1389 1 1405 1 1410 1 1436 2 1519 1 1536 1 1644 1 1646 1 1693 1 1732 1 1800 1 1973 1 2067 1 2188 1 2262 1 2280 1 2779 1 3145 1 3973 1 3995 1 4367 1 5599 1 17392 1 464068 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ....................................._....._....._..._..._....._.._..... ............._........_.............. [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]