Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/cafb2f2c68be176eb38e2088fcab17/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/cafb2f2c68be176eb38e2088fcab17/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/2cef1b8aa221b3b97ecbf5eca9b0d3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/2cef1b8aa221b3b97ecbf5eca9b0d3/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/f5b03375c22b8c82a4178cc1a4d788/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.fYLveBRDAR/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary
-sample contains 296292382 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir  -J /tmp/nxf.fYLveBRDAR/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.Chimeric.out.junction  -O /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.fYLveBRDAR/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes

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[2540000], rate=51417.00/min -building interval tree based on /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

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[2520000], rate=41098.12/min -building interval tree based on /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=25000.00/min 
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[2520000], rate=35677.21/min -building interval tree based on /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

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[2520000], rate=33063.63/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

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 5357142.86 reads per min processed...  
 5364705.88 reads per min processed...  
 5372093.02 reads per min processed...  
 5318181.82 reads per min processed...  
 5325842.70 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.fYLveBRDAR/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -522947.811678
EM: Round [1] log likelihood: -522630.617167
EM: Round [2] log likelihood: -522518.155186
EM: Round [3] log likelihood: -522465.484486
EM: Round [4] log likelihood: -522437.562709
EM: Round [5] log likelihood: -522421.761583
EM: Round [6] log likelihood: -522412.359124
EM: Round [7] log likelihood: -522406.480122
EM: Round [8] log likelihood: -522402.614496
EM: Round [9] log likelihood: -522399.945704
EM: Round [10] log likelihood: -522398.018862
EM: Round [11] log likelihood: -522396.571913
EM: Round [12] log likelihood: -522395.448294
EM: Round [13] log likelihood: -522394.550905
EM: Round [14] log likelihood: -522393.817279
EM: Round [15] log likelihood: -522393.205813
EM: Round [16] log likelihood: -522392.687903
EM: Round [17] log likelihood: -522392.243305
EM: Round [18] log likelihood: -522391.857319
EM: Round [19] log likelihood: -522391.519019
EM: Round [20] log likelihood: -522391.220114
EM: Round [21] log likelihood: -522390.954193
EM: Round [22] log likelihood: -522390.716216
EM: Round [23] log likelihood: -522390.502157
EM: Round [24] log likelihood: -522390.308758
EM: Round [25] log likelihood: -522390.133346
EM: Round [26] log likelihood: -522389.973704
EM: Round [27] log likelihood: -522389.827975
EM: Round [28] log likelihood: -522389.694587
EM: Round [29] log likelihood: -522389.572199
EM: Round [30] log likelihood: -522389.459657
EM: Round [31] log likelihood: -522389.355963
EM: Round [32] log likelihood: -522389.260249
EM: Round [33] log likelihood: -522389.171751
EM: Round [34] log likelihood: -522389.089800
EM: Round [35] log likelihood: -522389.013802
EM: Round [36] log likelihood: -522388.943230
EM: Round [37] log likelihood: -522388.877614
EM: Round [38] log likelihood: -522388.816535
EM: Round [39] log likelihood: -522388.759615
EM: Round [40] log likelihood: -522388.706516
EM: Round [41] log likelihood: -522388.656931
EM: Round [42] log likelihood: -522388.610582
EM: Round [43] log likelihood: -522388.567220
EM: Round [44] log likelihood: -522388.526617
EM: Round [45] log likelihood: -522388.488564
EM: Round [46] log likelihood: -522388.452874
EM: Round [47] log likelihood: -522388.419372
EM: Round [48] log likelihood: -522388.387902
EM: Round [49] log likelihood: -522388.358318
EM: Round [50] log likelihood: -522388.330489
EM: Round [51] log likelihood: -522388.304291
EM: Round [52] log likelihood: -522388.279614
EM: Round [53] log likelihood: -522388.256353
EM: Round [54] log likelihood: -522388.234414
EM: Round [55] log likelihood: -522388.213709
EM: Round [56] log likelihood: -522388.194158
EM: Round [57] log likelihood: -522388.175684
EM: Round [58] log likelihood: -522388.158218
EM: Round [59] log likelihood: -522388.141698
EM: Round [60] log likelihood: -522388.126062
EM: Round [61] log likelihood: -522388.111256
EM: Round [62] log likelihood: -522388.097228
EM: Round [63] log likelihood: -522388.083931
EM: Round [64] log likelihood: -522388.071320
EM: Round [65] log likelihood: -522388.059354
EM: Round [66] log likelihood: -522388.047995
EM: Round [67] log likelihood: -522388.037207
EM: Round [68] log likelihood: -522388.026956
EM: Round [69] log likelihood: -522388.017212
EM: Round [70] log likelihood: -522388.007944
EM: Round [71] log likelihood: -522387.999127
EM: Round [72] log likelihood: -522387.990734
EM: Round [73] log likelihood: -522387.982742
EM: Round [74] log likelihood: -522387.975128
EM: Round [75] log likelihood: -522387.967872
EM: Round [76] log likelihood: -522387.960953
EM: Round [77] log likelihood: -522387.954355
EM: Round [78] log likelihood: -522387.948059
EM: Round [79] log likelihood: -522387.942049
EM: Round [80] log likelihood: -522387.936311
EM: Round [81] log likelihood: -522387.930830
EM: Round [82] log likelihood: -522387.925592
EM: Round [83] log likelihood: -522387.920585
EM: Round [84] log likelihood: -522387.915798
EM: Round [85] log likelihood: -522387.911218
EM: Round [86] log likelihood: -522387.906837
EM: Round [87] log likelihood: -522387.902642
EM: Round [88] log likelihood: -522387.898626
EM: Round [89] log likelihood: -522387.894780
EM: Round [90] log likelihood: -522387.891095
EM: Round [91] log likelihood: -522387.887563
EM: Round [92] log likelihood: -522387.884177
EM: Round [93] log likelihood: -522387.880930
EM: Round [94] log likelihood: -522387.877816
EM: Round [95] log likelihood: -522387.874828
EM: Round [96] log likelihood: -522387.871960
EM: Round [97] log likelihood: -522387.869206
EM: Round [98] log likelihood: -522387.866563
EM: Round [99] log likelihood: -522387.864023
EM: Round [100] log likelihood: -522387.861583
EM: Round [101] log likelihood: -522387.859238
EM: Round [102] log likelihood: -522387.856985
EM: Round [103] log likelihood: -522387.854818
EM: Round [104] log likelihood: -522387.852734
EM: Round [105] log likelihood: -522387.850729
EM: Round [106] log likelihood: -522387.848800
EM: Round [107] log likelihood: -522387.846944
EM: Round [108] log likelihood: -522387.845157
EM: Round [109] log likelihood: -522387.843437
EM: Round [110] log likelihood: -522387.841781
EM: Round [111] log likelihood: -522387.840185
EM: Round [112] log likelihood: -522387.838648
EM: Round [113] log likelihood: -522387.837167
EM: Round [114] log likelihood: -522387.835740
EM: Round [115] log likelihood: -522387.834364
EM: Round [116] log likelihood: -522387.833038
EM: Round [117] log likelihood: -522387.831759
EM: Round [118] log likelihood: -522387.830525
EM: Round [119] log likelihood: -522387.829335
EM: Round [120] log likelihood: -522387.828187
EM: Round [121] log likelihood: -522387.827079
EM: Round [122] log likelihood: -522387.826010
EM: Round [123] log likelihood: -522387.824979
EM: Round [124] log likelihood: -522387.823982
EM: Round [125] log likelihood: -522387.823021
EM: Round [126] log likelihood: -522387.822092
EM: Round [127] log likelihood: -522387.821195
EM: Round [128] log likelihood: -522387.820328
EM: Round [129] log likelihood: -522387.819491
EM: Round [130] log likelihood: -522387.818682
EM: Round [131] log likelihood: -522387.817901
EM: Round [132] log likelihood: -522387.817145
EM: Round [133] log likelihood: -522387.816415
EM: Round [134] log likelihood: -522387.815709
EM: Round [135] log likelihood: -522387.815027
EM: Round [136] log likelihood: -522387.814367
EM: Round [137] log likelihood: -522387.813729
EM: Round [138] log likelihood: -522387.813112
EM: Round [139] log likelihood: -522387.812514
EM: Round [140] log likelihood: -522387.811937
EM: Round [141] log likelihood: -522387.811378
EM: Round [142] log likelihood: -522387.810837
EM: Round [143] log likelihood: -522387.810314
EM: Round [144] log likelihood: -522387.809808
EM: Round [145] log likelihood: -522387.809318
EM: Round [146] log likelihood: -522387.808843
EM: Round [147] log likelihood: -522387.808384
EM: Round [148] log likelihood: -522387.807939
EM: Round [149] log likelihood: -522387.807509
EM: Round [150] log likelihood: -522387.807092
EM: Round [151] log likelihood: -522387.806688
EM: Round [152] log likelihood: -522387.806297
EM: Round [153] log likelihood: -522387.805918
EM: Round [154] log likelihood: -522387.805551
EM: Round [155] log likelihood: -522387.805196
EM: Round [156] log likelihood: -522387.804852
EM: Round [157] log likelihood: -522387.804518
EM: Round [158] log likelihood: -522387.804195
EM: Round [159] log likelihood: -522387.803881
EM: Round [160] log likelihood: -522387.803578
EM: Round [161] log likelihood: -522387.803283
EM: Round [162] log likelihood: -522387.802998
EM: Round [163] log likelihood: -522387.802722
EM: Round [164] log likelihood: -522387.802453
EM: Round [165] log likelihood: -522387.802194
EM: Round [166] log likelihood: -522387.801942
EM: Round [167] log likelihood: -522387.801697
EM: Round [168] log likelihood: -522387.801460
EM: Round [169] log likelihood: -522387.801231
EM: Round [170] log likelihood: -522387.801008
EM: Round [171] log likelihood: -522387.800792
EM: Round [172] log likelihood: -522387.800582
EM: Round [173] log likelihood: -522387.800379
EM: Round [174] log likelihood: -522387.800182
EM: Round [175] log likelihood: -522387.799990
EM: Round [176] log likelihood: -522387.799805
EM: Round [177] log likelihood: -522387.799625
EM: Round [178] log likelihood: -522387.799450
EM: Round [179] log likelihood: -522387.799280
EM: Round [180] log likelihood: -522387.799116
EM: Round [181] log likelihood: -522387.798956
EM: Round [182] log likelihood: -522387.798801
EM: Round [183] log likelihood: -522387.798651
EM: Round [184] log likelihood: -522387.798505
EM: Round [185] log likelihood: -522387.798363
EM: Round [186] log likelihood: -522387.798225
EM: Round [187] log likelihood: -522387.798092
EM: Round [188] log likelihood: -522387.797962
EM: Round [189] log likelihood: -522387.797836
EM: Round [190] log likelihood: -522387.797714
EM: Round [191] log likelihood: -522387.797595
EM: Round [192] log likelihood: -522387.797480
EM: Round [193] log likelihood: -522387.797368
EM: Round [194] log likelihood: -522387.797259
EM: Round [195] log likelihood: -522387.797154
EM: Round [196] log likelihood: -522387.797051
EM: Round [197] log likelihood: -522387.796951
EM: Stopping iterations at round 197 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -522492.118458
EM: Round [1] log likelihood: -522208.108031
EM: Round [2] log likelihood: -522109.705413
EM: Round [3] log likelihood: -522064.609625
EM: Round [4] log likelihood: -522041.049100
EM: Round [5] log likelihood: -522027.818559
EM: Round [6] log likelihood: -522019.970432
EM: Round [7] log likelihood: -522015.066219
EM: Round [8] log likelihood: -522011.839200
EM: Round [9] log likelihood: -522009.607904
EM: Round [10] log likelihood: -522007.993436
EM: Round [11] log likelihood: -522006.777675
EM: Round [12] log likelihood: -522005.830383
EM: Round [13] log likelihood: -522005.070860
EM: Round [14] log likelihood: -522004.447259
EM: Round [15] log likelihood: -522003.925109
EM: Round [16] log likelihood: -522003.480753
EM: Round [17] log likelihood: -522003.097478
EM: Round [18] log likelihood: -522002.763164
EM: Round [19] log likelihood: -522002.468809
EM: Round [20] log likelihood: -522002.207585
EM: Round [21] log likelihood: -522001.974207
EM: Round [22] log likelihood: -522001.764518
EM: Round [23] log likelihood: -522001.575190
EM: Round [24] log likelihood: -522001.403521
EM: Round [25] log likelihood: -522001.247292
EM: Round [26] log likelihood: -522001.104653
EM: Round [27] log likelihood: -522000.974051
EM: Round [28] log likelihood: -522000.854166
EM: Round [29] log likelihood: -522000.743866
EM: Round [30] log likelihood: -522000.642177
EM: Round [31] log likelihood: -522000.548251
EM: Round [32] log likelihood: -522000.461345
EM: Round [33] log likelihood: -522000.380810
EM: Round [34] log likelihood: -522000.306067
EM: Round [35] log likelihood: -522000.236608
EM: Round [36] log likelihood: -522000.171976
EM: Round [37] log likelihood: -522000.111764
EM: Round [38] log likelihood: -522000.055608
EM: Round [39] log likelihood: -522000.003177
EM: Round [40] log likelihood: -521999.954177
EM: Round [41] log likelihood: -521999.908339
EM: Round [42] log likelihood: -521999.865419
EM: Round [43] log likelihood: -521999.825197
EM: Round [44] log likelihood: -521999.787471
EM: Round [45] log likelihood: -521999.752059
EM: Round [46] log likelihood: -521999.718792
EM: Round [47] log likelihood: -521999.687518
EM: Round [48] log likelihood: -521999.658095
EM: Round [49] log likelihood: -521999.630396
EM: Round [50] log likelihood: -521999.604300
EM: Round [51] log likelihood: -521999.579700
EM: Round [52] log likelihood: -521999.556496
EM: Round [53] log likelihood: -521999.534593
EM: Round [54] log likelihood: -521999.513907
EM: Round [55] log likelihood: -521999.494359
EM: Round [56] log likelihood: -521999.475876
EM: Round [57] log likelihood: -521999.458390
EM: Round [58] log likelihood: -521999.441838
EM: Round [59] log likelihood: -521999.426161
EM: Round [60] log likelihood: -521999.411307
EM: Round [61] log likelihood: -521999.397225
EM: Round [62] log likelihood: -521999.383867
EM: Round [63] log likelihood: -521999.371191
EM: Round [64] log likelihood: -521999.359156
EM: Round [65] log likelihood: -521999.347725
EM: Round [66] log likelihood: -521999.336861
EM: Round [67] log likelihood: -521999.326533
EM: Round [68] log likelihood: -521999.316709
EM: Round [69] log likelihood: -521999.307361
EM: Round [70] log likelihood: -521999.298462
EM: Round [71] log likelihood: -521999.289987
EM: Round [72] log likelihood: -521999.281913
EM: Round [73] log likelihood: -521999.274217
EM: Round [74] log likelihood: -521999.266879
EM: Round [75] log likelihood: -521999.259879
EM: Round [76] log likelihood: -521999.253200
EM: Round [77] log likelihood: -521999.246825
EM: Round [78] log likelihood: -521999.240736
EM: Round [79] log likelihood: -521999.234920
EM: Round [80] log likelihood: -521999.229362
EM: Round [81] log likelihood: -521999.224050
EM: Round [82] log likelihood: -521999.218969
EM: Round [83] log likelihood: -521999.214109
EM: Round [84] log likelihood: -521999.209458
EM: Round [85] log likelihood: -521999.205007
EM: Round [86] log likelihood: -521999.200745
EM: Round [87] log likelihood: -521999.196662
EM: Round [88] log likelihood: -521999.192751
EM: Round [89] log likelihood: -521999.189003
EM: Round [90] log likelihood: -521999.185409
EM: Round [91] log likelihood: -521999.181963
EM: Round [92] log likelihood: -521999.178658
EM: Round [93] log likelihood: -521999.175486
EM: Round [94] log likelihood: -521999.172442
EM: Round [95] log likelihood: -521999.169520
EM: Round [96] log likelihood: -521999.166715
EM: Round [97] log likelihood: -521999.164020
EM: Round [98] log likelihood: -521999.161430
EM: Round [99] log likelihood: -521999.158942
EM: Round [100] log likelihood: -521999.156551
EM: Round [101] log likelihood: -521999.154252
EM: Round [102] log likelihood: -521999.152040
EM: Round [103] log likelihood: -521999.149914
EM: Round [104] log likelihood: -521999.147867
EM: Round [105] log likelihood: -521999.145898
EM: Round [106] log likelihood: -521999.144003
EM: Round [107] log likelihood: -521999.142179
EM: Round [108] log likelihood: -521999.140422
EM: Round [109] log likelihood: -521999.138730
EM: Round [110] log likelihood: -521999.137100
EM: Round [111] log likelihood: -521999.135529
EM: Round [112] log likelihood: -521999.134016
EM: Round [113] log likelihood: -521999.132557
EM: Round [114] log likelihood: -521999.131151
EM: Round [115] log likelihood: -521999.129796
EM: Round [116] log likelihood: -521999.128488
EM: Round [117] log likelihood: -521999.127227
EM: Round [118] log likelihood: -521999.126010
EM: Round [119] log likelihood: -521999.124837
EM: Round [120] log likelihood: -521999.123704
EM: Round [121] log likelihood: -521999.122611
EM: Round [122] log likelihood: -521999.121555
EM: Round [123] log likelihood: -521999.120537
EM: Round [124] log likelihood: -521999.119553
EM: Round [125] log likelihood: -521999.118603
EM: Round [126] log likelihood: -521999.117685
EM: Round [127] log likelihood: -521999.116799
EM: Round [128] log likelihood: -521999.115942
EM: Round [129] log likelihood: -521999.115115
EM: Round [130] log likelihood: -521999.114315
EM: Round [131] log likelihood: -521999.113542
EM: Round [132] log likelihood: -521999.112795
EM: Round [133] log likelihood: -521999.112073
EM: Round [134] log likelihood: -521999.111375
EM: Round [135] log likelihood: -521999.110700
EM: Round [136] log likelihood: -521999.110047
EM: Round [137] log likelihood: -521999.109415
EM: Round [138] log likelihood: -521999.108804
EM: Round [139] log likelihood: -521999.108213
EM: Round [140] log likelihood: -521999.107641
EM: Round [141] log likelihood: -521999.107088
EM: Round [142] log likelihood: -521999.106553
EM: Round [143] log likelihood: -521999.106034
EM: Round [144] log likelihood: -521999.105533
EM: Round [145] log likelihood: -521999.105047
EM: Round [146] log likelihood: -521999.104577
EM: Round [147] log likelihood: -521999.104122
EM: Round [148] log likelihood: -521999.103682
EM: Round [149] log likelihood: -521999.103255
EM: Round [150] log likelihood: -521999.102842
EM: Round [151] log likelihood: -521999.102442
EM: Round [152] log likelihood: -521999.102054
EM: Round [153] log likelihood: -521999.101679
EM: Round [154] log likelihood: -521999.101315
EM: Round [155] log likelihood: -521999.100963
EM: Round [156] log likelihood: -521999.100621
EM: Round [157] log likelihood: -521999.100291
EM: Round [158] log likelihood: -521999.099970
EM: Round [159] log likelihood: -521999.099659
EM: Round [160] log likelihood: -521999.099358
EM: Round [161] log likelihood: -521999.099066
EM: Round [162] log likelihood: -521999.098784
EM: Round [163] log likelihood: -521999.098509
EM: Round [164] log likelihood: -521999.098243
EM: Round [165] log likelihood: -521999.097986
EM: Round [166] log likelihood: -521999.097736
EM: Round [167] log likelihood: -521999.097493
EM: Round [168] log likelihood: -521999.097258
EM: Round [169] log likelihood: -521999.097031
EM: Round [170] log likelihood: -521999.096810
EM: Round [171] log likelihood: -521999.096595
EM: Round [172] log likelihood: -521999.096387
EM: Round [173] log likelihood: -521999.096185
EM: Round [174] log likelihood: -521999.095990
EM: Round [175] log likelihood: -521999.095800
EM: Round [176] log likelihood: -521999.095616
EM: Round [177] log likelihood: -521999.095437
EM: Round [178] log likelihood: -521999.095264
EM: Round [179] log likelihood: -521999.095095
EM: Round [180] log likelihood: -521999.094932
EM: Round [181] log likelihood: -521999.094774
EM: Round [182] log likelihood: -521999.094620
EM: Round [183] log likelihood: -521999.094470
EM: Round [184] log likelihood: -521999.094326
EM: Round [185] log likelihood: -521999.094185
EM: Round [186] log likelihood: -521999.094048
EM: Round [187] log likelihood: -521999.093916
EM: Round [188] log likelihood: -521999.093787
EM: Round [189] log likelihood: -521999.093662
EM: Round [190] log likelihood: -521999.093541
EM: Round [191] log likelihood: -521999.093423
EM: Round [192] log likelihood: -521999.093309
EM: Round [193] log likelihood: -521999.093197
EM: Round [194] log likelihood: -521999.093090
EM: Round [195] log likelihood: -521999.092985
EM: Round [196] log likelihood: -521999.092883
EM: Round [197] log likelihood: -521999.092784
EM: Stopping iterations at round 197 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 296292382 > /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir > /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir --annotate /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir
-done, see /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 2647, filtered: 11750)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.fYLveBRDAR/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.fYLveBRDAR/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000276758.1]
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WARNING, no entry stored in dbm for [ENSG00000255248.9]
WARNING, no entry stored in dbm for [ENSG00000233983.2]
WARNING, no entry stored in dbm for [ENSG00000226674.11]
WARNING, no entry stored in dbm for [ENSG00000261738.7]
WARNING, no entry stored in dbm for [ENSG00000226278.1]
WARNING, no entry stored in dbm for [ENSG00000257084.1]
WARNING, no entry stored in dbm for [ENSG00000272036.1]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000225783.8]
WARNING, no entry stored in dbm for [ENSG00000196312.15]
WARNING, no entry stored in dbm for [ENSG00000196312.15]
WARNING, no entry stored in dbm for [ENSG00000248464.1]
WARNING, no entry stored in dbm for [ENSG00000285079.1]
WARNING, no entry stored in dbm for [ENSG00000214198.8]
WARNING, no entry stored in dbm for [ENSG00000235984.5]
WARNING, no entry stored in dbm for [ENSG00000228666.1]
WARNING, no entry stored in dbm for [ENSG00000271237.1]
WARNING, no entry stored in dbm for [ENSG00000255317.1]
WARNING, no entry stored in dbm for [ENSG00000286205.1]
WARNING, no entry stored in dbm for [ENSG00000227372.12]
WARNING, no entry stored in dbm for [ENSG00000261710.1]
WARNING, no entry stored in dbm for [ENSG00000245293.3]
WARNING, no entry stored in dbm for [ENSG00000247675.7]
WARNING, no entry stored in dbm for [ENSG00000241288.8]
WARNING, no entry stored in dbm for [ENSG00000230587.2]
WARNING, no entry stored in dbm for [ENSG00000250754.6]
WARNING, no entry stored in dbm for [ENSG00000281903.2]
WARNING, no entry stored in dbm for [ENSG00000257906.3]
WARNING, no entry stored in dbm for [ENSG00000254101.7]
WARNING, no entry stored in dbm for [ENSG00000234663.7]
WARNING, no entry stored in dbm for [ENSG00000279579.3]
WARNING, no entry stored in dbm for [ENSG00000262468.6]
WARNING, no entry stored in dbm for [ENSG00000198685.4]
WARNING, no entry stored in dbm for [ENSG00000225434.3]
WARNING, no entry stored in dbm for [ENSG00000260924.2]
WARNING, no entry stored in dbm for [ENSG00000235437.8]
WARNING, no entry stored in dbm for [ENSG00000241369.6]
WARNING, no entry stored in dbm for [ENSG00000226673.2]
WARNING, no entry stored in dbm for [ENSG00000228393.4]
WARNING, no entry stored in dbm for [ENSG00000242258.1]
WARNING, no entry stored in dbm for [ENSG00000281005.1]
WARNING, no entry stored in dbm for [ENSG00000245060.8]
WARNING, no entry stored in dbm for [ENSG00000285294.1]
WARNING, no entry stored in dbm for [ENSG00000261824.7]
WARNING, no entry stored in dbm for [ENSG00000226067.7]
WARNING, no entry stored in dbm for [ENSG00000196302.5]
WARNING, no entry stored in dbm for [ENSG00000258279.4]
WARNING, no entry stored in dbm for [ENSG00000229694.7]
WARNING, no entry stored in dbm for [ENSG00000280798.1]
WARNING, no entry stored in dbm for [ENSG00000259527.2]
WARNING, no entry stored in dbm for [ENSG00000231721.7]
WARNING, no entry stored in dbm for [ENSG00000239883.8]
WARNING, no entry stored in dbm for [ENSG00000274602.5]
WARNING, no entry stored in dbm for [ENSG00000234665.9]
WARNING, no entry stored in dbm for [ENSG00000214110.3]
WARNING, no entry stored in dbm for [ENSG00000260005.6]
WARNING, no entry stored in dbm for [ENSG00000213538.5]
WARNING, no entry stored in dbm for [ENSG00000229636.2]
WARNING, no entry stored in dbm for [ENSG00000235919.4]
WARNING, no entry stored in dbm for [ENSG00000214514.8]
WARNING, no entry stored in dbm for [ENSG00000258232.2]
WARNING, no entry stored in dbm for [ENSG00000226447.1]
WARNING, no entry stored in dbm for [ENSG00000212694.8]
WARNING, no entry stored in dbm for [ENSG00000260473.2]
WARNING, no entry stored in dbm for [ENSG00000254777.5]
WARNING, no entry stored in dbm for [ENSG00000267420.1]
WARNING, no entry stored in dbm for [ENSG00000234199.3]
WARNING, no entry stored in dbm for [ENSG00000197536.11]
WARNING, no entry stored in dbm for [ENSG00000254034.2]
WARNING, no entry stored in dbm for [ENSG00000248290.1]
WARNING, no entry stored in dbm for [ENSG00000163915.7]
WARNING, no entry stored in dbm for [ENSG00000255733.6]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000230869.1]
WARNING, no entry stored in dbm for [ENSG00000203914.4]
WARNING, no entry stored in dbm for [ENSG00000250742.4]
WARNING, no entry stored in dbm for [ENSG00000250742.4]
WARNING, no entry stored in dbm for [ENSG00000251151.2]
WARNING, no entry stored in dbm for [ENSG00000233429.9]
WARNING, no entry stored in dbm for [ENSG00000257815.7]
WARNING, no entry stored in dbm for [ENSG00000231471.1]
WARNING, no entry stored in dbm for [ENSG00000258452.1]
WARNING, no entry stored in dbm for [ENSG00000236124.1]
WARNING, no entry stored in dbm for [ENSG00000230459.3]
WARNING, no entry stored in dbm for [ENSG00000230519.2]
WARNING, no entry stored in dbm for [ENSG00000124097.7]
WARNING, no entry stored in dbm for [ENSG00000206341.7]
WARNING, no entry stored in dbm for [ENSG00000228376.3]
WARNING, no entry stored in dbm for [ENSG00000248785.1]
WARNING, no entry stored in dbm for [ENSG00000233299.1]
WARNING, no entry stored in dbm for [ENSG00000215866.8]
WARNING, no entry stored in dbm for [ENSG00000260337.4]
WARNING, no entry stored in dbm for [ENSG00000250494.1]
WARNING, no entry stored in dbm for [ENSG00000237854.3]
WARNING, no entry stored in dbm for [ENSG00000232034.1]
WARNING, no entry stored in dbm for [ENSG00000287949.1]
WARNING, no entry stored in dbm for [ENSG00000270683.1]
WARNING, no entry stored in dbm for [ENSG00000241549.8]
WARNING, no entry stored in dbm for [ENSG00000264538.6]
WARNING, no entry stored in dbm for [ENSG00000241549.8]
WARNING, no entry stored in dbm for [ENSG00000226002.1]
WARNING, no entry stored in dbm for [ENSG00000227113.2]
WARNING, no entry stored in dbm for [ENSG00000286364.1]
WARNING, no entry stored in dbm for [ENSG00000233369.7]
WARNING, no entry stored in dbm for [ENSG00000250903.9]
WARNING, no entry stored in dbm for [ENSG00000250959.2]
WARNING, no entry stored in dbm for [ENSG00000267419.2]
WARNING, no entry stored in dbm for [ENSG00000234741.8]
WARNING, no entry stored in dbm for [ENSG00000234741.8]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000250330.1]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000282826.2]
WARNING, no entry stored in dbm for [ENSG00000181524.6]
WARNING, no entry stored in dbm for [ENSG00000249859.12]
WARNING, no entry stored in dbm for [ENSG00000232019.1]
WARNING, no entry stored in dbm for [ENSG00000250064.1]
WARNING, no entry stored in dbm for [ENSG00000226688.7]
WARNING, no entry stored in dbm for [ENSG00000235768.1]
WARNING, no entry stored in dbm for [ENSG00000272142.4]
WARNING, no entry stored in dbm for [ENSG00000276805.2]
WARNING, no entry stored in dbm for [ENSG00000283791.1]
WARNING, no entry stored in dbm for [ENSG00000223773.7]
WARNING, no entry stored in dbm for [ENSG00000267259.1]
WARNING, no entry stored in dbm for [ENSG00000238152.2]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000280454.1]
WARNING, no entry stored in dbm for [ENSG00000231752.6]
WARNING, no entry stored in dbm for [ENSG00000255527.1]
WARNING, no entry stored in dbm for [ENSG00000204623.9]
WARNING, no entry stored in dbm for [ENSG00000255441.1]
WARNING, no entry stored in dbm for [ENSG00000251629.7]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000217770.1]
WARNING, no entry stored in dbm for [ENSG00000261557.1]
WARNING, no entry stored in dbm for [ENSG00000233057.1]
WARNING, no entry stored in dbm for [ENSG00000267506.5]
WARNING, no entry stored in dbm for [ENSG00000230863.3]
WARNING, no entry stored in dbm for [ENSG00000248727.6]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000235963.1]
WARNING, no entry stored in dbm for [ENSG00000196295.12]
WARNING, no entry stored in dbm for [ENSG00000234353.2]
WARNING, no entry stored in dbm for [ENSG00000205790.1]
WARNING, no entry stored in dbm for [ENSG00000248079.3]
WARNING, no entry stored in dbm for [ENSG00000284128.1]
WARNING, no entry stored in dbm for [ENSG00000286207.1]
WARNING, no entry stored in dbm for [ENSG00000205041.1]
WARNING, no entry stored in dbm for [ENSG00000215417.13]
WARNING, no entry stored in dbm for [ENSG00000228045.1]
WARNING, no entry stored in dbm for [ENSG00000176584.18]
WARNING, no entry stored in dbm for [ENSG00000231607.13]
WARNING, no entry stored in dbm for [ENSG00000225722.1]
WARNING, no entry stored in dbm for [ENSG00000267125.2]
WARNING, no entry stored in dbm for [ENSG00000201648.1]
WARNING, no entry stored in dbm for [ENSG00000199313.1]
WARNING, no entry stored in dbm for [ENSG00000222736.1]
WARNING, no entry stored in dbm for [ENSG00000202538.1]
WARNING, no entry stored in dbm for [ENSG00000200795.1]
WARNING, no entry stored in dbm for [ENSG00000231890.8]
WARNING, no entry stored in dbm for [ENSG00000226950.8]
WARNING, no entry stored in dbm for [ENSG00000287708.1]
WARNING, no entry stored in dbm for [ENSG00000277146.1]
WARNING, no entry stored in dbm for [ENSG00000270741.1]
WARNING, no entry stored in dbm for [ENSG00000263934.5]
WARNING, no entry stored in dbm for [ENSG00000235734.4]
WARNING, no entry stored in dbm for [ENSG00000273409.3]
WARNING, no entry stored in dbm for [ENSG00000215908.10]
WARNING, no entry stored in dbm for [ENSG00000287449.1]
WARNING, no entry stored in dbm for [ENSG00000227517.7]
WARNING, no entry stored in dbm for [ENSG00000270533.2]
WARNING, no entry stored in dbm for [ENSG00000260772.1]
WARNING, no entry stored in dbm for [ENSG00000246695.8]
WARNING, no entry stored in dbm for [ENSG00000224365.1]
WARNING, no entry stored in dbm for [ENSG00000225244.3]
WARNING, no entry stored in dbm for [ENSG00000260896.6]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000233750.3]
WARNING, no entry stored in dbm for [ENSG00000226312.7]
WARNING, no entry stored in dbm for [ENSG00000250038.7]
WARNING, no entry stored in dbm for [ENSG00000227617.9]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000213362.3]
WARNING, no entry stored in dbm for [ENSG00000249201.2]
WARNING, no entry stored in dbm for [ENSG00000217733.2]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000228775.8]
WARNING, no entry stored in dbm for [ENSG00000287151.1]
WARNING, no entry stored in dbm for [ENSG00000128254.16]
WARNING, no entry stored in dbm for [ENSG00000205885.7]
WARNING, no entry stored in dbm for [ENSG00000222047.9]
WARNING, no entry stored in dbm for [ENSG00000263647.1]
WARNING, no entry stored in dbm for [ENSG00000240280.7]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000286156.1]
WARNING, no entry stored in dbm for [ENSG00000204177.10]
WARNING, no entry stored in dbm for [ENSG00000280171.1]
WARNING, no entry stored in dbm for [ENSG00000260412.1]
WARNING, no entry stored in dbm for [ENSG00000235831.7]
WARNING, no entry stored in dbm for [ENSG00000235978.6]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000154874.15]
WARNING, no entry stored in dbm for [ENSG00000250922.1]
WARNING, no entry stored in dbm for [ENSG00000236834.1]
WARNING, no entry stored in dbm for [ENSG00000235919.4]
WARNING, no entry stored in dbm for [ENSG00000235919.4]
WARNING, no entry stored in dbm for [ENSG00000235919.4]
WARNING, no entry stored in dbm for [ENSG00000278254.4]
WARNING, no entry stored in dbm for [ENSG00000250421.5]
WARNING, no entry stored in dbm for [ENSG00000215908.10]
WARNING, no entry stored in dbm for [ENSG00000235072.2]
WARNING, no entry stored in dbm for [ENSG00000224597.10]
WARNING, no entry stored in dbm for [ENSG00000255380.1]
WARNING, no entry stored in dbm for [ENSG00000235695.1]
WARNING, no entry stored in dbm for [ENSG00000244198.7]
WARNING, no entry stored in dbm for [ENSG00000286545.1]
WARNING, no entry stored in dbm for [ENSG00000189275.4]
WARNING, no entry stored in dbm for [ENSG00000254862.5]
WARNING, no entry stored in dbm for [ENSG00000277693.2]
WARNING, no entry stored in dbm for [ENSG00000222042.2]
WARNING, no entry stored in dbm for [ENSG00000267794.1]
WARNING, no entry stored in dbm for [ENSG00000264964.2]
WARNING, no entry stored in dbm for [ENSG00000266954.1]
WARNING, no entry stored in dbm for [ENSG00000245552.7]
WARNING, no entry stored in dbm for [ENSG00000230212.6]
WARNING, no entry stored in dbm for [ENSG00000268509.2]
WARNING, no entry stored in dbm for [ENSG00000284128.1]
WARNING, no entry stored in dbm for [ENSG00000244301.6]
WARNING, no entry stored in dbm for [ENSG00000180747.15]
WARNING, no entry stored in dbm for [ENSG00000248994.2]
WARNING, no entry stored in dbm for [ENSG00000224796.1]
WARNING, no entry stored in dbm for [ENSG00000267589.1]
WARNING, no entry stored in dbm for [ENSG00000253981.5]
WARNING, no entry stored in dbm for [ENSG00000286895.1]
WARNING, no entry stored in dbm for [ENSG00000238260.1]
WARNING, no entry stored in dbm for [ENSG00000238260.1]
WARNING, no entry stored in dbm for [ENSG00000283480.1]
WARNING, no entry stored in dbm for [ENSG00000232499.2]
WARNING, no entry stored in dbm for [ENSG00000287398.1]
WARNING, no entry stored in dbm for [ENSG00000285280.2]
WARNING, no entry stored in dbm for [ENSG00000234640.1]
WARNING, no entry stored in dbm for [ENSG00000250090.1]
WARNING, no entry stored in dbm for [ENSG00000282772.1]
WARNING, no entry stored in dbm for [ENSG00000287057.1]
WARNING, no entry stored in dbm for [ENSG00000226149.6]
WARNING, no entry stored in dbm for [ENSG00000236358.1]
WARNING, no entry stored in dbm for [ENSG00000286330.1]
WARNING, no entry stored in dbm for [ENSG00000285796.1]
WARNING, no entry stored in dbm for [ENSG00000243155.1]
WARNING, no entry stored in dbm for [ENSG00000224307.2]
WARNING, no entry stored in dbm for [ENSG00000285608.1]
WARNING, no entry stored in dbm for [ENSG00000285637.2]
WARNING, no entry stored in dbm for [ENSG00000261060.1]
WARNING, no entry stored in dbm for [ENSG00000284977.2]
WARNING, no entry stored in dbm for [ENSG00000232934.8]
WARNING, no entry stored in dbm for [ENSG00000271989.1]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000250299.6]
WARNING, no entry stored in dbm for [ENSG00000231563.2]
WARNING, no entry stored in dbm for [ENSG00000230615.7]
WARNING, no entry stored in dbm for [ENSG00000257275.6]
WARNING, no entry stored in dbm for [ENSG00000287708.1]
WARNING, no entry stored in dbm for [ENSG00000183506.17]
WARNING, no entry stored in dbm for [ENSG00000258028.3]
WARNING, no entry stored in dbm for [ENSG00000238223.1]
WARNING, no entry stored in dbm for [ENSG00000203900.2]
WARNING, no entry stored in dbm for [ENSG00000259977.1]
WARNING, no entry stored in dbm for [ENSG00000287395.1]
WARNING, no entry stored in dbm for [ENSG00000268858.2]
WARNING, no entry stored in dbm for [ENSG00000276649.1]
WARNING, no entry stored in dbm for [ENSG00000223653.6]
WARNING, no entry stored in dbm for [ENSG00000224963.3]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000218793.1]
WARNING, no entry stored in dbm for [ENSG00000231769.3]
WARNING, no entry stored in dbm for [ENSG00000260425.1]
WARNING, no entry stored in dbm for [ENSG00000286652.1]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000223509.8]
WARNING, no entry stored in dbm for [ENSG00000243366.3]
WARNING, no entry stored in dbm for [ENSG00000260651.1]
WARNING, no entry stored in dbm for [ENSG00000231713.2]
WARNING, no entry stored in dbm for [ENSG00000234665.9]
WARNING, no entry stored in dbm for [ENSG00000263551.6]
WARNING, no entry stored in dbm for [ENSG00000248544.2]
WARNING, no entry stored in dbm for [ENSG00000250882.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000231340.1]
WARNING, no entry stored in dbm for [ENSG00000177410.13]
WARNING, no entry stored in dbm for [ENSG00000214135.8]
WARNING, no entry stored in dbm for [ENSG00000276850.5]
WARNING, no entry stored in dbm for [ENSG00000237550.5]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000278182.1]
WARNING, no entry stored in dbm for [ENSG00000277702.1]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000275121.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000286830.1]
WARNING, no entry stored in dbm for [ENSG00000251417.2]
WARNING, no entry stored in dbm for [ENSG00000260262.1]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000238035.8]
WARNING, no entry stored in dbm for [ENSG00000238035.8]
WARNING, no entry stored in dbm for [ENSG00000223509.8]
WARNING, no entry stored in dbm for [ENSG00000270055.1]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000261327.5]
WARNING, no entry stored in dbm for [ENSG00000279708.1]
WARNING, no entry stored in dbm for [ENSG00000260647.1]
WARNING, no entry stored in dbm for [ENSG00000260647.1]
WARNING, no entry stored in dbm for [ENSG00000284605.1]
WARNING, no entry stored in dbm for [ENSG00000255367.3]
WARNING, no entry stored in dbm for [ENSG00000257391.1]
WARNING, no entry stored in dbm for [ENSG00000248285.1]
WARNING, no entry stored in dbm for [ENSG00000286619.1]
WARNING, no entry stored in dbm for [ENSG00000235881.2]
WARNING, no entry stored in dbm for [ENSG00000278791.1]
WARNING, no entry stored in dbm for [ENSG00000278791.1]
WARNING, no entry stored in dbm for [ENSG00000275374.1]
WARNING, no entry stored in dbm for [ENSG00000256663.1]
WARNING, no entry stored in dbm for [ENSG00000269888.1]
WARNING, no entry stored in dbm for [ENSG00000270554.1]
WARNING, no entry stored in dbm for [ENSG00000286182.1]
WARNING, no entry stored in dbm for [ENSG00000253235.2]
WARNING, no entry stored in dbm for [ENSG00000080947.15]
WARNING, no entry stored in dbm for [ENSG00000249505.1]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000286136.2]
WARNING, no entry stored in dbm for [ENSG00000250159.7]
WARNING, no entry stored in dbm for [ENSG00000277041.1]
WARNING, no entry stored in dbm for [ENSG00000254548.1]
WARNING, no entry stored in dbm for [ENSG00000254548.1]
WARNING, no entry stored in dbm for [ENSG00000248318.1]
WARNING, no entry stored in dbm for [ENSG00000260037.5]
WARNING, no entry stored in dbm for [ENSG00000254707.1]
WARNING, no entry stored in dbm for [ENSG00000224479.6]
WARNING, no entry stored in dbm for [ENSG00000259692.6]
WARNING, no entry stored in dbm for [ENSG00000254153.1]
WARNING, no entry stored in dbm for [ENSG00000260236.1]
WARNING, no entry stored in dbm for [ENSG00000247373.3]
WARNING, no entry stored in dbm for [ENSG00000286436.1]
WARNING, no entry stored in dbm for [ENSG00000260862.1]
WARNING, no entry stored in dbm for [ENSG00000249001.5]
WARNING, no entry stored in dbm for [ENSG00000286420.1]
WARNING, no entry stored in dbm for [ENSG00000287919.1]
WARNING, no entry stored in dbm for [ENSG00000218418.2]
WARNING, no entry stored in dbm for [ENSG00000267053.8]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000248126.1]
WARNING, no entry stored in dbm for [ENSG00000248126.1]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000266806.1]
WARNING, no entry stored in dbm for [ENSG00000259347.7]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000237666.2]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000279328.1]
WARNING, no entry stored in dbm for [ENSG00000189229.11]
WARNING, no entry stored in dbm for [ENSG00000257337.7]
WARNING, no entry stored in dbm for [ENSG00000283674.3]
WARNING, no entry stored in dbm for [ENSG00000279221.1]
WARNING, no entry stored in dbm for [ENSG00000254859.1]
WARNING, no entry stored in dbm for [ENSG00000266962.2]
WARNING, no entry stored in dbm for [ENSG00000218682.1]
WARNING, no entry stored in dbm for [ENSG00000145063.15]
WARNING, no entry stored in dbm for [ENSG00000145063.15]
WARNING, no entry stored in dbm for [ENSG00000287692.1]
WARNING, no entry stored in dbm for [ENSG00000254951.7]
WARNING, no entry stored in dbm for [ENSG00000278621.1]
WARNING, no entry stored in dbm for [ENSG00000267040.6]
WARNING, no entry stored in dbm for [ENSG00000267040.6]
WARNING, no entry stored in dbm for [ENSG00000267040.6]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000257817.2]
WARNING, no entry stored in dbm for [ENSG00000286909.1]
WARNING, no entry stored in dbm for [ENSG00000223628.2]
WARNING, no entry stored in dbm for [ENSG00000231414.1]
WARNING, no entry stored in dbm for [ENSG00000259488.2]
WARNING, no entry stored in dbm for [ENSG00000283041.1]
WARNING, no entry stored in dbm for [ENSG00000254444.1]
WARNING, no entry stored in dbm for [ENSG00000238166.2]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000265018.6]
WARNING, no entry stored in dbm for [ENSG00000259407.1]
WARNING, no entry stored in dbm for [ENSG00000253690.1]
WARNING, no entry stored in dbm for [ENSG00000213963.6]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000285106.2]
WARNING, no entry stored in dbm for [ENSG00000286449.1]
WARNING, no entry stored in dbm for [ENSG00000267605.7]
WARNING, no entry stored in dbm for [ENSG00000267605.7]
WARNING, no entry stored in dbm for [ENSG00000286030.2]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000268543.1]
WARNING, no entry stored in dbm for [ENSG00000274184.1]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000249839.1]
WARNING, no entry stored in dbm for [ENSG00000254765.1]
WARNING, no entry stored in dbm for [ENSG00000270933.1]
WARNING, no entry stored in dbm for [ENSG00000268416.1]
WARNING, no entry stored in dbm for [ENSG00000238152.2]
WARNING, no entry stored in dbm for [ENSG00000269867.1]
WARNING, no entry stored in dbm for [ENSG00000235253.1]
WARNING, no entry stored in dbm for [ENSG00000279166.1]
WARNING, no entry stored in dbm for [ENSG00000225963.8]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000260413.1]
WARNING, no entry stored in dbm for [ENSG00000259933.6]
WARNING, no entry stored in dbm for [ENSG00000214331.8]
WARNING, no entry stored in dbm for [ENSG00000176593.8]
WARNING, no entry stored in dbm for [ENSG00000196796.5]
WARNING, no entry stored in dbm for [ENSG00000287263.1]
WARNING, no entry stored in dbm for [ENSG00000269399.2]
WARNING, no entry stored in dbm for [ENSG00000267727.1]
WARNING, no entry stored in dbm for [ENSG00000238254.3]
WARNING, no entry stored in dbm for [ENSG00000248103.1]
WARNING, no entry stored in dbm for [ENSG00000187172.15]
WARNING, no entry stored in dbm for [ENSG00000225790.2]
WARNING, no entry stored in dbm for [ENSG00000255655.1]
WARNING, no entry stored in dbm for [ENSG00000284959.2]
WARNING, no entry stored in dbm for [ENSG00000283504.1]
WARNING, no entry stored in dbm for [ENSG00000283132.1]
WARNING, no entry stored in dbm for [ENSG00000229180.7]
WARNING, no entry stored in dbm for [ENSG00000279726.2]
WARNING, no entry stored in dbm for [ENSG00000214719.13]
WARNING, no entry stored in dbm for [ENSG00000286366.1]
WARNING, no entry stored in dbm for [ENSG00000273623.1]
WARNING, no entry stored in dbm for [ENSG00000146556.14]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000250778.1]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000214243.3]
WARNING, no entry stored in dbm for [ENSG00000205485.13]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000254610.3]
WARNING, no entry stored in dbm for [ENSG00000244560.7]
WARNING, no entry stored in dbm for [ENSG00000273419.1]
WARNING, no entry stored in dbm for [ENSG00000286063.1]
WARNING, no entry stored in dbm for [ENSG00000267394.1]
WARNING, no entry stored in dbm for [ENSG00000196656.7]
WARNING, no entry stored in dbm for [ENSG00000270194.1]
WARNING, no entry stored in dbm for [ENSG00000251595.7]
WARNING, no entry stored in dbm for [ENSG00000224715.1]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
WARNING, no entry stored in dbm for [ENSG00000259345.7]
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.
Use of uninitialized value $orient in string eq at /usr/local/src/STAR-Fusion/FusionAnnotator/util/FusionCodingEffect.pm line 73, <$fh> line 2638.


	* STAR-Fusion complete.  See output: /tmp/nxf.fYLveBRDAR/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)