File Info

Filename
aih-tih-sc-2905df-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e0a310d4e4d61dccb20b929125f612/aih-tih-sc-2905df-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:54:33
                             Started mapping on |	Jun 08 07:56:52
                                    Finished on |	Jun 08 08:43:58
       Mapping speed, Million of reads per hour |	378.17

                          Number of input reads |	296860439
                      Average input read length |	260
                                    UNIQUE READS:
                   Uniquely mapped reads number |	285222373
                        Uniquely mapped reads % |	96.08%
                          Average mapped length |	259.88
                       Number of splices: Total |	331479807
            Number of splices: Annotated (sjdb) |	327099225
                       Number of splices: GT/AG |	328051100
                       Number of splices: GC/AG |	2510345
                       Number of splices: AT/AC |	285978
               Number of splices: Non-canonical |	632384
                      Mismatch rate per base, % |	0.19%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.07
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.70
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7107891
             % of reads mapped to multiple loci |	2.39%
        Number of reads mapped to too many loci |	239070
             % of reads mapped to too many loci |	0.08%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	367576
       % of reads unmapped: too many mismatches |	0.12%
            Number of reads unmapped: too short |	2003320
                 % of reads unmapped: too short |	0.67%
                Number of reads unmapped: other |	179089
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	3254202
                            % of chimeric reads |	1.10%