Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/2efe59cca47bb94d33dabf09d33b29/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/5d3b8fb3b7c1a32b4780431c07eb05/fi_workdir/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/2efe59cca47bb94d33dabf09d33b29/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 23605
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 23605
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:23605
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 5 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AATF--CTXND2 HAVANA gene 8238 16146 . + . FI_gene_label "AATF^ENSG00000275700.6" ; ID "AATF--CTXND2^AATF^ENSG00000275700.6" ; exon_id "ENSE00003729439.1" ; exon_number 1 ; gene_id "AATF--CTXND2^AATF^ENSG00000275700.6" ; gene_name AATF ; gene_type protein_coding ; havana_gene "OTTHUMG00000188458.3" ; havana_transcript "OTTHUMT00000477301.1" ; hgnc_id "HGNC:19235" ; level 2 ; orig_coord_info "chr17,36988658,36988720,+" ; protein_id "ENSP00000480472.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AATF--CTXND2^ENST00000610798.4" ; transcript_name "AATF-201" ; transcript_support_level 2 ; transcript_type protein_coding
AATF--CTXND2 HAVANA mRNA 8238 16146 . + . FI_gene_label "AATF^ENSG00000275700.6" ; ID "AATF--CTXND2^ENST00000610798.4" ; Parent "AATF--CTXND2^AATF^ENSG00000275700.6" ; exon_id "ENSE00003729439.1" ; exon_number 1 ; gene_id "AATF--CTXND2^AATF^ENSG00000275700.6" ; gene_name AATF ; gene_type protein_coding ; havana_gene "OTTHUMG00000188458.3" ; havana_transcript "OTTHUMT00000477301.1" ; hgnc_id "HGNC:19235" ; level 2 ; orig_coord_info "chr17,36988658,36988720,+" ; protein_id "ENSP00000480472.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "AATF--CTXND2^ENST00000610798.4" ; transcript_name "AATF-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AATF--CTXND2 HAVANA gene 25287 27515 . + . FI_gene_label "CTXND2^ENSG00000283324.1" ; ID "AATF--CTXND2^CTXND2^ENSG00000283324.1" ; exon_id "ENSE00003793610.1" ; exon_number 2 ; gene_id "AATF--CTXND2^CTXND2^ENSG00000283324.1" ; gene_name CTXND2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191721.1" ; havana_transcript "OTTHUMT00000489688.1" ; hgnc_id "HGNC:53440" ; level 2 ; orig_coord_info "chr1,150912315,150912479,+" ; protein_id "ENSP00000490418.1" ; tag RNA_Seq_supported_only basic appris_principal_1 ; transcript_id "AATF--CTXND2^ENST00000636087.1" ; transcript_name "CTXND2-201" ; transcript_support_level 2 ; transcript_type protein_coding
AATF--CTXND2 HAVANA mRNA 25287 27515 . + . FI_gene_label "CTXND2^ENSG00000283324.1" ; ID "AATF--CTXND2^ENST00000636087.1" ; Parent "AATF--CTXND2^CTXND2^ENSG00000283324.1" ; exon_id "ENSE00003793610.1" ; exon_number 2 ; gene_id "AATF--CTXND2^CTXND2^ENSG00000283324.1" ; gene_name CTXND2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191721.1" ; havana_transcript "OTTHUMT00000489688.1" ; hgnc_id "HGNC:53440" ; level 2 ; orig_coord_info "chr1,150912315,150912479,+" ; protein_id "ENSP00000490418.1" ; tag RNA_Seq_supported_only basic appris_principal_1 ; transcript_id "AATF--CTXND2^ENST00000636087.1" ; transcript_name "CTXND2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AC009283.1--ITPR1 ENSEMBL gene 4649 96546 . + . FI_gene_label "ITPR1^ENSG00000150995.20" ; ID "AC009283.1--ITPR1^ITPR1^ENSG00000150995.20" ; ccdsid "CCDS54551.1" ; exon_id "ENSE00003473040.1" ; exon_number 3 ; gene_id "AC009283.1--ITPR1^ITPR1^ENSG00000150995.20" ; gene_name ITPR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154996.16" ; hgnc_id "HGNC:6180" ; level 3 ; orig_coord_info "chr3,4516492,4516583,+" ; protein_id "ENSP00000306253.8" ; tag basic CCDS ; transcript_id "AC009283.1--ITPR1^ENST00000302640.12" ; transcript_name "ITPR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC009283.1--ITPR1 ENSEMBL mRNA 4649 96546 . + . FI_gene_label "ITPR1^ENSG00000150995.20" ; ID "AC009283.1--ITPR1^ENST00000302640.12" ; Parent "AC009283.1--ITPR1^ITPR1^ENSG00000150995.20" ; ccdsid "CCDS54551.1" ; exon_id "ENSE00003473040.1" ; exon_number 3 ; gene_id "AC009283.1--ITPR1^ITPR1^ENSG00000150995.20" ; gene_name ITPR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154996.16" ; hgnc_id "HGNC:6180" ; level 3 ; orig_coord_info "chr3,4516492,4516583,+" ; protein_id "ENSP00000306253.8" ; tag basic CCDS ; transcript_id "AC009283.1--ITPR1^ENST00000302640.12" ; transcript_name "ITPR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKS1A--TMEM132D HAVANA gene 1001 28729 . + . FI_gene_label "ANKS1A^ENSG00000064999.15" ; ID "ANKS1A--TMEM132D^ANKS1A^ENSG00000064999.15" ; ccdsid "CCDS4798.1" ; exon_id "ENSE00003847126.1" ; exon_number 1 ; gene_id "ANKS1A--TMEM132D^ANKS1A^ENSG00000064999.15" ; gene_name ANKS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014559.4" ; havana_transcript "OTTHUMT00000040262.3" ; hgnc_id "HGNC:20961" ; level 2 ; orig_coord_info "chr6,34889403,34889599,+" ; protein_id "ENSP00000353518.3" ; tag basic MANE_Select CCDS ; transcript_id "ANKS1A--TMEM132D^ENST00000360359.5" ; transcript_name "ANKS1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANKS1A--TMEM132D HAVANA mRNA 1001 28729 . + . FI_gene_label "ANKS1A^ENSG00000064999.15" ; ID "ANKS1A--TMEM132D^ENST00000360359.5" ; Parent "ANKS1A--TMEM132D^ANKS1A^ENSG00000064999.15" ; ccdsid "CCDS4798.1" ; exon_id "ENSE00003847126.1" ; exon_number 1 ; gene_id "ANKS1A--TMEM132D^ANKS1A^ENSG00000064999.15" ; gene_name ANKS1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014559.4" ; havana_transcript "OTTHUMT00000040262.3" ; hgnc_id "HGNC:20961" ; level 2 ; orig_coord_info "chr6,34889403,34889599,+" ; protein_id "ENSP00000353518.3" ; tag basic MANE_Select CCDS ; transcript_id "ANKS1A--TMEM132D^ENST00000360359.5" ; transcript_name "ANKS1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKS1A--TMEM132D HAVANA gene 38859 47163 . + . FI_gene_label "TMEM132D^ENSG00000151952.16" ; ID "ANKS1A--TMEM132D^TMEM132D^ENSG00000151952.16" ; exon_id "ENSE00002257552.1" ; exon_number 1 ; gene_id "ANKS1A--TMEM132D^TMEM132D^ENSG00000151952.16" ; gene_name TMEM132D ; gene_type protein_coding ; havana_gene "OTTHUMG00000168400.2" ; havana_transcript "OTTHUMT00000399591.1" ; hgnc_id "HGNC:29411" ; level 2 ; orig_coord_info "chr12,129084497,129084759,-" ; protein_id "ENSP00000374092.4" ; tag basic ; transcript_id "ANKS1A--TMEM132D^ENST00000389441.8" ; transcript_name "TMEM132D-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANKS1A--TMEM132D HAVANA mRNA 38859 47163 . + . FI_gene_label "TMEM132D^ENSG00000151952.16" ; ID "ANKS1A--TMEM132D^ENST00000389441.8" ; Parent "ANKS1A--TMEM132D^TMEM132D^ENSG00000151952.16" ; exon_id "ENSE00002257552.1" ; exon_number 1 ; gene_id "ANKS1A--TMEM132D^TMEM132D^ENSG00000151952.16" ; gene_name TMEM132D ; gene_type protein_coding ; havana_gene "OTTHUMG00000168400.2" ; havana_transcript "OTTHUMT00000399591.1" ; hgnc_id "HGNC:29411" ; level 2 ; orig_coord_info "chr12,129084497,129084759,-" ; protein_id "ENSP00000374092.4" ; tag basic ; transcript_id "ANKS1A--TMEM132D^ENST00000389441.8" ; transcript_name "TMEM132D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATE1--STK3 HAVANA gene 1453 19569 . + . FI_gene_label "ATE1^ENSG00000107669.18" ; ID "ATE1--STK3^ATE1^ENSG00000107669.18" ; ccdsid "CCDS31300.1" ; exon_id "ENSE00001513271.3" ; exon_number 1 ; gene_id "ATE1--STK3^ATE1^ENSG00000107669.18" ; gene_name ATE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019178.2" ; havana_transcript "OTTHUMT00000050739.1" ; hgnc_id "HGNC:782" ; level 2 ; orig_coord_info "chr10,121927844,121927949,-" ; protein_id "ENSP00000224652.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "ATE1--STK3^ENST00000224652.11" ; transcript_name "ATE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATE1--STK3 HAVANA mRNA 1453 19569 . + . FI_gene_label "ATE1^ENSG00000107669.18" ; ID "ATE1--STK3^ENST00000224652.11" ; Parent "ATE1--STK3^ATE1^ENSG00000107669.18" ; ccdsid "CCDS31300.1" ; exon_id "ENSE00001513271.3" ; exon_number 1 ; gene_id "ATE1--STK3^ATE1^ENSG00000107669.18" ; gene_name ATE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019178.2" ; havana_transcript "OTTHUMT00000050739.1" ; hgnc_id "HGNC:782" ; level 2 ; orig_coord_info "chr10,121927844,121927949,-" ; protein_id "ENSP00000224652.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "ATE1--STK3^ENST00000224652.11" ; transcript_name "ATE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATE1--STK3 HAVANA gene 32541 54118 . + . FI_gene_label "STK3^ENSG00000104375.17" ; ID "ATE1--STK3^STK3^ENSG00000104375.17" ; ccdsid "CCDS47900.1" ; exon_id "ENSE00001478384.5" ; exon_number 1 ; gene_id "ATE1--STK3^STK3^ENSG00000104375.17" ; gene_name STK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164651.10" ; havana_transcript "OTTHUMT00000379635.3" ; hgnc_id "HGNC:11406" ; level 2 ; orig_coord_info "chr8,98825515,98825540,-" ; protein_id "ENSP00000390500.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATE1--STK3^ENST00000419617.7" ; transcript_name "STK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATE1--STK3 HAVANA mRNA 32541 54118 . + . FI_gene_label "STK3^ENSG00000104375.17" ; ID "ATE1--STK3^ENST00000419617.7" ; Parent "ATE1--STK3^STK3^ENSG00000104375.17" ; ccdsid "CCDS47900.1" ; exon_id "ENSE00001478384.5" ; exon_number 1 ; gene_id "ATE1--STK3^STK3^ENSG00000104375.17" ; gene_name STK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164651.10" ; havana_transcript "OTTHUMT00000379635.3" ; hgnc_id "HGNC:11406" ; level 2 ; orig_coord_info "chr8,98825515,98825540,-" ; protein_id "ENSP00000390500.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATE1--STK3^ENST00000419617.7" ; transcript_name "STK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATG7--IQSEC1 HAVANA gene 50061 70996 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "ATG7--IQSEC1^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "ATG7--IQSEC1^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "ATG7--IQSEC1^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATG7--IQSEC1 HAVANA mRNA 50061 70996 . + . FI_gene_label "IQSEC1^ENSG00000144711.16" ; ID "ATG7--IQSEC1^ENST00000273221.8" ; Parent "ATG7--IQSEC1^IQSEC1^ENSG00000144711.16" ; ccdsid "CCDS33703.1" ; exon_id "ENSE00001820547.1" ; exon_number 1 ; gene_id "ATG7--IQSEC1^IQSEC1^ENSG00000144711.16" ; gene_name IQSEC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155398.9" ; havana_transcript "OTTHUMT00000339865.2" ; hgnc_id "HGNC:29112" ; level 2 ; orig_coord_info "chr3,12967387,12967451,-" ; protein_id "ENSP00000273221.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "ATG7--IQSEC1^ENST00000273221.8" ; transcript_name "IQSEC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATG7--IQSEC1 HAVANA gene 1108 36146 . + . FI_gene_label "ATG7^ENSG00000197548.12" ; ID "ATG7--IQSEC1^ATG7^ENSG00000197548.12" ; ccdsid "CCDS2605.1" ; exon_id "ENSE00003638636.1" ; exon_number 2 ; gene_id "ATG7--IQSEC1^ATG7^ENSG00000197548.12" ; gene_name ATG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129740.21" ; havana_transcript "OTTHUMT00000251951.3" ; hgnc_id "HGNC:16935" ; level 2 ; orig_coord_info "chr3,11298696,11298855,+" ; protein_id "ENSP00000346437.3" ; tag basic appris_principal_1 CCDS ; transcript_id "ATG7--IQSEC1^ENST00000354449.7" ; transcript_name "ATG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATG7--IQSEC1 HAVANA mRNA 1108 36146 . + . FI_gene_label "ATG7^ENSG00000197548.12" ; ID "ATG7--IQSEC1^ENST00000354449.7" ; Parent "ATG7--IQSEC1^ATG7^ENSG00000197548.12" ; ccdsid "CCDS2605.1" ; exon_id "ENSE00003638636.1" ; exon_number 2 ; gene_id "ATG7--IQSEC1^ATG7^ENSG00000197548.12" ; gene_name ATG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129740.21" ; havana_transcript "OTTHUMT00000251951.3" ; hgnc_id "HGNC:16935" ; level 2 ; orig_coord_info "chr3,11298696,11298855,+" ; protein_id "ENSP00000346437.3" ; tag basic appris_principal_1 CCDS ; transcript_id "ATG7--IQSEC1^ENST00000354449.7" ; transcript_name "ATG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP2C1--COL6A6 HAVANA gene 5219 37103 . + . FI_gene_label "ATP2C1^ENSG00000017260.20" ; ID "ATP2C1--COL6A6^ATP2C1^ENSG00000017260.20" ; ccdsid "CCDS46913.1" ; exon_id "ENSE00002026527.1" ; exon_number 1 ; gene_id "ATP2C1--COL6A6^ATP2C1^ENSG00000017260.20" ; gene_name ATP2C1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000136802.8" ; havana_transcript "OTTHUMT00000356642.2" ; hgnc_id "HGNC:13211" ; level 2 ; orig_coord_info "chr3,130894770,130894775,+" ; protein_id "ENSP00000329664.8" ; tag basic CCDS ; transcript_id "ATP2C1--COL6A6^ENST00000328560.12" ; transcript_name "ATP2C1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP2C1--COL6A6 HAVANA mRNA 5219 37103 . + . FI_gene_label "ATP2C1^ENSG00000017260.20" ; ID "ATP2C1--COL6A6^ENST00000328560.12" ; Parent "ATP2C1--COL6A6^ATP2C1^ENSG00000017260.20" ; ccdsid "CCDS46913.1" ; exon_id "ENSE00002026527.1" ; exon_number 1 ; gene_id "ATP2C1--COL6A6^ATP2C1^ENSG00000017260.20" ; gene_name ATP2C1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000136802.8" ; havana_transcript "OTTHUMT00000356642.2" ; hgnc_id "HGNC:13211" ; level 2 ; orig_coord_info "chr3,130894770,130894775,+" ; protein_id "ENSP00000329664.8" ; tag basic CCDS ; transcript_id "ATP2C1--COL6A6^ENST00000328560.12" ; transcript_name "ATP2C1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP2C1--COL6A6 HAVANA gene 40132 80915 . + . FI_gene_label "COL6A6^ENSG00000206384.10" ; ID "ATP2C1--COL6A6^COL6A6^ENSG00000206384.10" ; ccdsid "CCDS46911.1" ; exon_id "ENSE00001425142.2" ; exon_number 1 ; gene_id "ATP2C1--COL6A6^COL6A6^ENSG00000206384.10" ; gene_name COL6A6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159653.6" ; havana_transcript "OTTHUMT00000356705.5" ; hgnc_id "HGNC:27023" ; level 2 ; orig_coord_info "chr3,130560365,130560428,+" ; protein_id "ENSP00000351310.6" ; tag basic appris_principal_1 CCDS ; transcript_id "ATP2C1--COL6A6^ENST00000358511.10" ; transcript_name "COL6A6-201" ; transcript_support_level 5 ; transcript_type protein_coding
ATP2C1--COL6A6 HAVANA mRNA 40132 80915 . + . FI_gene_label "COL6A6^ENSG00000206384.10" ; ID "ATP2C1--COL6A6^ENST00000358511.10" ; Parent "ATP2C1--COL6A6^COL6A6^ENSG00000206384.10" ; ccdsid "CCDS46911.1" ; exon_id "ENSE00001425142.2" ; exon_number 1 ; gene_id "ATP2C1--COL6A6^COL6A6^ENSG00000206384.10" ; gene_name COL6A6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159653.6" ; havana_transcript "OTTHUMT00000356705.5" ; hgnc_id "HGNC:27023" ; level 2 ; orig_coord_info "chr3,130560365,130560428,+" ; protein_id "ENSP00000351310.6" ; tag basic appris_principal_1 CCDS ; transcript_id "ATP2C1--COL6A6^ENST00000358511.10" ; transcript_name "COL6A6-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ATP6V0A2--AC018692.1 HAVANA gene 1001 35929 . + . FI_gene_label "ATP6V0A2^ENSG00000185344.15" ; ID "ATP6V0A2--AC018692.1^ATP6V0A2^ENSG00000185344.15" ; ccdsid "CCDS9254.1" ; exon_id "ENSE00001360488.3" ; exon_number 1 ; gene_id "ATP6V0A2--AC018692.1^ATP6V0A2^ENSG00000185344.15" ; gene_name ATP6V0A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168723.4" ; havana_transcript "OTTHUMT00000400765.3" ; hgnc_id "HGNC:18481" ; level 2 ; orig_coord_info "chr12,123712566,123712682,+" ; protein_id "ENSP00000332247.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP6V0A2--AC018692.1^ENST00000330342.8" ; transcript_name "ATP6V0A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP6V0A2--AC018692.1 HAVANA mRNA 1001 35929 . + . FI_gene_label "ATP6V0A2^ENSG00000185344.15" ; ID "ATP6V0A2--AC018692.1^ENST00000330342.8" ; Parent "ATP6V0A2--AC018692.1^ATP6V0A2^ENSG00000185344.15" ; ccdsid "CCDS9254.1" ; exon_id "ENSE00001360488.3" ; exon_number 1 ; gene_id "ATP6V0A2--AC018692.1^ATP6V0A2^ENSG00000185344.15" ; gene_name ATP6V0A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168723.4" ; havana_transcript "OTTHUMT00000400765.3" ; hgnc_id "HGNC:18481" ; level 2 ; orig_coord_info "chr12,123712566,123712682,+" ; protein_id "ENSP00000332247.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP6V0A2--AC018692.1^ENST00000330342.8" ; transcript_name "ATP6V0A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP6V0A2--CR382285.1 HAVANA gene 1001 35929 . + . FI_gene_label "ATP6V0A2^ENSG00000185344.15" ; ID "ATP6V0A2--CR382285.1^ATP6V0A2^ENSG00000185344.15" ; ccdsid "CCDS9254.1" ; exon_id "ENSE00001360488.3" ; exon_number 1 ; gene_id "ATP6V0A2--CR382285.1^ATP6V0A2^ENSG00000185344.15" ; gene_name ATP6V0A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168723.4" ; havana_transcript "OTTHUMT00000400765.3" ; hgnc_id "HGNC:18481" ; level 2 ; orig_coord_info "chr12,123712566,123712682,+" ; protein_id "ENSP00000332247.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP6V0A2--CR382285.1^ENST00000330342.8" ; transcript_name "ATP6V0A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP6V0A2--CR382285.1 HAVANA mRNA 1001 35929 . + . FI_gene_label "ATP6V0A2^ENSG00000185344.15" ; ID "ATP6V0A2--CR382285.1^ENST00000330342.8" ; Parent "ATP6V0A2--CR382285.1^ATP6V0A2^ENSG00000185344.15" ; ccdsid "CCDS9254.1" ; exon_id "ENSE00001360488.3" ; exon_number 1 ; gene_id "ATP6V0A2--CR382285.1^ATP6V0A2^ENSG00000185344.15" ; gene_name ATP6V0A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168723.4" ; havana_transcript "OTTHUMT00000400765.3" ; hgnc_id "HGNC:18481" ; level 2 ; orig_coord_info "chr12,123712566,123712682,+" ; protein_id "ENSP00000332247.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP6V0A2--CR382285.1^ENST00000330342.8" ; transcript_name "ATP6V0A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAK1--TCP11 ENSEMBL gene 10940 21694 . + . FI_gene_label "TCP11^ENSG00000124678.20" ; ID "BAK1--TCP11^TCP11^ENSG00000124678.20" ; ccdsid "CCDS4799.1" ; exon_id "ENSE00003505467.1" ; exon_number 3 ; gene_id "BAK1--TCP11^TCP11^ENSG00000124678.20" ; gene_name TCP11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014560.9" ; hgnc_id "HGNC:11658" ; level 3 ; orig_coord_info "chr6,35140020,35140069,-" ; protein_id "ENSP00000244645.3" ; tag basic CCDS ; transcript_id "BAK1--TCP11^ENST00000244645.7" ; transcript_name "TCP11-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAK1--TCP11 ENSEMBL mRNA 10940 21694 . + . FI_gene_label "TCP11^ENSG00000124678.20" ; ID "BAK1--TCP11^ENST00000244645.7" ; Parent "BAK1--TCP11^TCP11^ENSG00000124678.20" ; ccdsid "CCDS4799.1" ; exon_id "ENSE00003505467.1" ; exon_number 3 ; gene_id "BAK1--TCP11^TCP11^ENSG00000124678.20" ; gene_name TCP11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014560.9" ; hgnc_id "HGNC:11658" ; level 3 ; orig_coord_info "chr6,35140020,35140069,-" ; protein_id "ENSP00000244645.3" ; tag basic CCDS ; transcript_id "BAK1--TCP11^ENST00000244645.7" ; transcript_name "TCP11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAK1--TCP11 ENSEMBL gene 1001 6752 . + . FI_gene_label "BAK1^ENSG00000030110.13" ; ID "BAK1--TCP11^BAK1^ENSG00000030110.13" ; exon_id "ENSE00000849371.1" ; exon_number 2 ; gene_id "BAK1--TCP11^BAK1^ENSG00000030110.13" ; gene_name BAK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014530.4" ; hgnc_id "HGNC:949" ; level 3 ; orig_coord_info "chr6,33577535,33577604,-" ; protein_id "ENSP00000353878.6" ; tag basic ; transcript_id "BAK1--TCP11^ENST00000360661.9" ; transcript_name "BAK1-201" ; transcript_support_level 5 ; transcript_type protein_coding
BAK1--TCP11 ENSEMBL mRNA 1001 6752 . + . FI_gene_label "BAK1^ENSG00000030110.13" ; ID "BAK1--TCP11^ENST00000360661.9" ; Parent "BAK1--TCP11^BAK1^ENSG00000030110.13" ; exon_id "ENSE00000849371.1" ; exon_number 2 ; gene_id "BAK1--TCP11^BAK1^ENSG00000030110.13" ; gene_name BAK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014530.4" ; hgnc_id "HGNC:949" ; level 3 ; orig_coord_info "chr6,33577535,33577604,-" ; protein_id "ENSP00000353878.6" ; tag basic ; transcript_id "BAK1--TCP11^ENST00000360661.9" ; transcript_name "BAK1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BTBD9--ZFAND3 HAVANA gene 28538 41642 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "BTBD9--ZFAND3^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "BTBD9--ZFAND3^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BTBD9--ZFAND3^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
BTBD9--ZFAND3 HAVANA mRNA 28538 41642 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "BTBD9--ZFAND3^ENST00000287218.9" ; Parent "BTBD9--ZFAND3^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "BTBD9--ZFAND3^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BTBD9--ZFAND3^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BTBD9--ZFAND3 HAVANA gene 4762 25537 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "BTBD9--ZFAND3^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "BTBD9--ZFAND3^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "BTBD9--ZFAND3^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
BTBD9--ZFAND3 HAVANA mRNA 4762 25537 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "BTBD9--ZFAND3^ENST00000314100.10" ; Parent "BTBD9--ZFAND3^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "BTBD9--ZFAND3^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "BTBD9--ZFAND3^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C17orf80--AC239799.2 HAVANA gene 1001 7545 . + . FI_gene_label "C17orf80^ENSG00000141219.15" ; ID "C17orf80--AC239799.2^C17orf80^ENSG00000141219.15" ; ccdsid "CCDS74145.1" ; exon_id "ENSE00001340095.1" ; exon_number 3 ; gene_id "C17orf80--AC239799.2^C17orf80^ENSG00000141219.15" ; gene_name C17orf80 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178417.2" ; havana_transcript "OTTHUMT00000441887.1" ; hgnc_id "HGNC:29601" ; level 2 ; orig_coord_info "chr17,73235483,73236995,+" ; protein_id "ENSP00000255557.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "C17orf80--AC239799.2^ENST00000255557.8" ; transcript_name "C17orf80-201" ; transcript_support_level 2 ; transcript_type protein_coding
C17orf80--AC239799.2 HAVANA mRNA 1001 7545 . + . FI_gene_label "C17orf80^ENSG00000141219.15" ; ID "C17orf80--AC239799.2^ENST00000255557.8" ; Parent "C17orf80--AC239799.2^C17orf80^ENSG00000141219.15" ; ccdsid "CCDS74145.1" ; exon_id "ENSE00001340095.1" ; exon_number 3 ; gene_id "C17orf80--AC239799.2^C17orf80^ENSG00000141219.15" ; gene_name C17orf80 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178417.2" ; havana_transcript "OTTHUMT00000441887.1" ; hgnc_id "HGNC:29601" ; level 2 ; orig_coord_info "chr17,73235483,73236995,+" ; protein_id "ENSP00000255557.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "C17orf80--AC239799.2^ENST00000255557.8" ; transcript_name "C17orf80-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
C17orf80--HJV HAVANA gene 1001 7545 . + . FI_gene_label "C17orf80^ENSG00000141219.15" ; ID "C17orf80--HJV^C17orf80^ENSG00000141219.15" ; ccdsid "CCDS74145.1" ; exon_id "ENSE00001340095.1" ; exon_number 3 ; gene_id "C17orf80--HJV^C17orf80^ENSG00000141219.15" ; gene_name C17orf80 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178417.2" ; havana_transcript "OTTHUMT00000441887.1" ; hgnc_id "HGNC:29601" ; level 2 ; orig_coord_info "chr17,73235483,73236995,+" ; protein_id "ENSP00000255557.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "C17orf80--HJV^ENST00000255557.8" ; transcript_name "C17orf80-201" ; transcript_support_level 2 ; transcript_type protein_coding
C17orf80--HJV HAVANA mRNA 1001 7545 . + . FI_gene_label "C17orf80^ENSG00000141219.15" ; ID "C17orf80--HJV^ENST00000255557.8" ; Parent "C17orf80--HJV^C17orf80^ENSG00000141219.15" ; ccdsid "CCDS74145.1" ; exon_id "ENSE00001340095.1" ; exon_number 3 ; gene_id "C17orf80--HJV^C17orf80^ENSG00000141219.15" ; gene_name C17orf80 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178417.2" ; havana_transcript "OTTHUMT00000441887.1" ; hgnc_id "HGNC:29601" ; level 2 ; orig_coord_info "chr17,73235483,73236995,+" ; protein_id "ENSP00000255557.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "C17orf80--HJV^ENST00000255557.8" ; transcript_name "C17orf80-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
C17orf80--HJV HAVANA gene 14530 18547 . + . FI_gene_label "HJV^ENSG00000168509.20" ; ID "C17orf80--HJV^HJV^ENSG00000168509.20" ; ccdsid "CCDS72879.1" ; exon_id "ENSE00001435872.1" ; exon_number 2 ; gene_id "C17orf80--HJV^HJV^ENSG00000168509.20" ; gene_name HJV ; gene_type protein_coding ; havana_gene "OTTHUMG00000013748.7" ; havana_transcript "OTTHUMT00000038527.3" ; hgnc_id "HGNC:4887" ; level 2 ; orig_coord_info "chr1,146020135,146020231,-" ; protein_id "ENSP00000337014.5" ; tag upstream_uORF basic MANE_Select appris_principal_1 CCDS ; transcript_id "C17orf80--HJV^ENST00000336751.11" ; transcript_name "HJV-201" ; transcript_support_level 2 ; transcript_type protein_coding
C17orf80--HJV HAVANA mRNA 14530 18547 . + . FI_gene_label "HJV^ENSG00000168509.20" ; ID "C17orf80--HJV^ENST00000336751.11" ; Parent "C17orf80--HJV^HJV^ENSG00000168509.20" ; ccdsid "CCDS72879.1" ; exon_id "ENSE00001435872.1" ; exon_number 2 ; gene_id "C17orf80--HJV^HJV^ENSG00000168509.20" ; gene_name HJV ; gene_type protein_coding ; havana_gene "OTTHUMG00000013748.7" ; havana_transcript "OTTHUMT00000038527.3" ; hgnc_id "HGNC:4887" ; level 2 ; orig_coord_info "chr1,146020135,146020231,-" ; protein_id "ENSP00000337014.5" ; tag upstream_uORF basic MANE_Select appris_principal_1 CCDS ; transcript_id "C17orf80--HJV^ENST00000336751.11" ; transcript_name "HJV-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRYZL2P--SEC16B HAVANA mRNA 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^ENST00000308284.10" ; Parent "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSNK2B--BTBD9 HAVANA gene 12879 33654 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "CSNK2B--BTBD9^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "CSNK2B--BTBD9^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "CSNK2B--BTBD9^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSNK2B--BTBD9 HAVANA mRNA 12879 33654 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "CSNK2B--BTBD9^ENST00000314100.10" ; Parent "CSNK2B--BTBD9^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "CSNK2B--BTBD9^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "CSNK2B--BTBD9^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSNK2B--BTBD9 HAVANA gene 2066 5844 . + . FI_gene_label "CSNK2B^ENSG00000204435.15" ; ID "CSNK2B--BTBD9^CSNK2B^ENSG00000204435.15" ; ccdsid "CCDS4712.1" ; exon_id "ENSE00003620260.1" ; exon_number 2 ; gene_id "CSNK2B--BTBD9^CSNK2B^ENSG00000204435.15" ; gene_name CSNK2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000177888.1" ; havana_transcript "OTTHUMT00000076066.3" ; hgnc_id "HGNC:2460" ; level 2 ; orig_coord_info "chr6,31666832,31666903,+" ; protein_id "ENSP00000365025.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CSNK2B--BTBD9^ENST00000375865.6" ; transcript_name "CSNK2B-201" ; transcript_support_level 3 ; transcript_type protein_coding
CSNK2B--BTBD9 HAVANA mRNA 2066 5844 . + . FI_gene_label "CSNK2B^ENSG00000204435.15" ; ID "CSNK2B--BTBD9^ENST00000375865.6" ; Parent "CSNK2B--BTBD9^CSNK2B^ENSG00000204435.15" ; ccdsid "CCDS4712.1" ; exon_id "ENSE00003620260.1" ; exon_number 2 ; gene_id "CSNK2B--BTBD9^CSNK2B^ENSG00000204435.15" ; gene_name CSNK2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000177888.1" ; havana_transcript "OTTHUMT00000076066.3" ; hgnc_id "HGNC:2460" ; level 2 ; orig_coord_info "chr6,31666832,31666903,+" ; protein_id "ENSP00000365025.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CSNK2B--BTBD9^ENST00000375865.6" ; transcript_name "CSNK2B-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
DCAF6--LINC00511 HAVANA gene 1926 29722 . + . FI_gene_label "DCAF6^ENSG00000143164.15" ; ID "DCAF6--LINC00511^DCAF6^ENSG00000143164.15" ; ccdsid "CCDS30933.1" ; exon_id "ENSE00002195216.1" ; exon_number 1 ; gene_id "DCAF6--LINC00511^DCAF6^ENSG00000143164.15" ; gene_name DCAF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034572.6" ; havana_transcript "OTTHUMT00000083661.3" ; hgnc_id "HGNC:30002" ; level 2 ; orig_coord_info "chr1,167936912,167937008,+" ; protein_id "ENSP00000311949.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "DCAF6--LINC00511^ENST00000312263.10" ; transcript_name "DCAF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
DCAF6--LINC00511 HAVANA mRNA 1926 29722 . + . FI_gene_label "DCAF6^ENSG00000143164.15" ; ID "DCAF6--LINC00511^ENST00000312263.10" ; Parent "DCAF6--LINC00511^DCAF6^ENSG00000143164.15" ; ccdsid "CCDS30933.1" ; exon_id "ENSE00002195216.1" ; exon_number 1 ; gene_id "DCAF6--LINC00511^DCAF6^ENSG00000143164.15" ; gene_name DCAF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034572.6" ; havana_transcript "OTTHUMT00000083661.3" ; hgnc_id "HGNC:30002" ; level 2 ; orig_coord_info "chr1,167936912,167937008,+" ; protein_id "ENSP00000311949.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "DCAF6--LINC00511^ENST00000312263.10" ; transcript_name "DCAF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDHD2--AC068672.2 HAVANA gene 2193 21952 . + . FI_gene_label "DDHD2^ENSG00000085788.14" ; ID "DDHD2--AC068672.2^DDHD2^ENSG00000085788.14" ; ccdsid "CCDS34883.1" ; exon_id "ENSE00003695665.1" ; exon_number 2 ; gene_id "DDHD2--AC068672.2^DDHD2^ENSG00000085788.14" ; gene_name DDHD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164095.7" ; havana_transcript "OTTHUMT00000377251.3" ; hgnc_id "HGNC:29106" ; level 2 ; orig_coord_info "chr8,38232995,38233214,+" ; protein_id "ENSP00000380352.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDHD2--AC068672.2^ENST00000397166.7" ; transcript_name "DDHD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
DDHD2--AC068672.2 HAVANA mRNA 2193 21952 . + . FI_gene_label "DDHD2^ENSG00000085788.14" ; ID "DDHD2--AC068672.2^ENST00000397166.7" ; Parent "DDHD2--AC068672.2^DDHD2^ENSG00000085788.14" ; ccdsid "CCDS34883.1" ; exon_id "ENSE00003695665.1" ; exon_number 2 ; gene_id "DDHD2--AC068672.2^DDHD2^ENSG00000085788.14" ; gene_name DDHD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164095.7" ; havana_transcript "OTTHUMT00000377251.3" ; hgnc_id "HGNC:29106" ; level 2 ; orig_coord_info "chr8,38232995,38233214,+" ; protein_id "ENSP00000380352.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDHD2--AC068672.2^ENST00000397166.7" ; transcript_name "DDHD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DDHD2--KCTD9P6 HAVANA gene 2193 21952 . + . FI_gene_label "DDHD2^ENSG00000085788.14" ; ID "DDHD2--KCTD9P6^DDHD2^ENSG00000085788.14" ; ccdsid "CCDS34883.1" ; exon_id "ENSE00003695665.1" ; exon_number 2 ; gene_id "DDHD2--KCTD9P6^DDHD2^ENSG00000085788.14" ; gene_name DDHD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164095.7" ; havana_transcript "OTTHUMT00000377251.3" ; hgnc_id "HGNC:29106" ; level 2 ; orig_coord_info "chr8,38232995,38233214,+" ; protein_id "ENSP00000380352.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDHD2--KCTD9P6^ENST00000397166.7" ; transcript_name "DDHD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
DDHD2--KCTD9P6 HAVANA mRNA 2193 21952 . + . FI_gene_label "DDHD2^ENSG00000085788.14" ; ID "DDHD2--KCTD9P6^ENST00000397166.7" ; Parent "DDHD2--KCTD9P6^DDHD2^ENSG00000085788.14" ; ccdsid "CCDS34883.1" ; exon_id "ENSE00003695665.1" ; exon_number 2 ; gene_id "DDHD2--KCTD9P6^DDHD2^ENSG00000085788.14" ; gene_name DDHD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164095.7" ; havana_transcript "OTTHUMT00000377251.3" ; hgnc_id "HGNC:29106" ; level 2 ; orig_coord_info "chr8,38232995,38233214,+" ; protein_id "ENSP00000380352.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDHD2--KCTD9P6^ENST00000397166.7" ; transcript_name "DDHD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DDHD2--UBXN8 HAVANA gene 33509 42915 . + . FI_gene_label "UBXN8^ENSG00000104691.16" ; ID "DDHD2--UBXN8^UBXN8^ENSG00000104691.16" ; ccdsid "CCDS75723.1" ; exon_id "ENSE00001557450.4" ; exon_number 1 ; gene_id "DDHD2--UBXN8^UBXN8^ENSG00000104691.16" ; gene_name UBXN8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163851.11" ; havana_transcript "OTTHUMT00000375958.5" ; hgnc_id "HGNC:30307" ; level 2 ; orig_coord_info "chr8,30744190,30744277,+" ; protein_id "ENSP00000479216.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "DDHD2--UBXN8^ENST00000265616.10" ; transcript_name "UBXN8-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDHD2--UBXN8 HAVANA mRNA 33509 42915 . + . FI_gene_label "UBXN8^ENSG00000104691.16" ; ID "DDHD2--UBXN8^ENST00000265616.10" ; Parent "DDHD2--UBXN8^UBXN8^ENSG00000104691.16" ; ccdsid "CCDS75723.1" ; exon_id "ENSE00001557450.4" ; exon_number 1 ; gene_id "DDHD2--UBXN8^UBXN8^ENSG00000104691.16" ; gene_name UBXN8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163851.11" ; havana_transcript "OTTHUMT00000375958.5" ; hgnc_id "HGNC:30307" ; level 2 ; orig_coord_info "chr8,30744190,30744277,+" ; protein_id "ENSP00000479216.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "DDHD2--UBXN8^ENST00000265616.10" ; transcript_name "UBXN8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDHD2--UBXN8 HAVANA gene 2193 21952 . + . FI_gene_label "DDHD2^ENSG00000085788.14" ; ID "DDHD2--UBXN8^DDHD2^ENSG00000085788.14" ; ccdsid "CCDS34883.1" ; exon_id "ENSE00003695665.1" ; exon_number 2 ; gene_id "DDHD2--UBXN8^DDHD2^ENSG00000085788.14" ; gene_name DDHD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164095.7" ; havana_transcript "OTTHUMT00000377251.3" ; hgnc_id "HGNC:29106" ; level 2 ; orig_coord_info "chr8,38232995,38233214,+" ; protein_id "ENSP00000380352.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDHD2--UBXN8^ENST00000397166.7" ; transcript_name "DDHD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
DDHD2--UBXN8 HAVANA mRNA 2193 21952 . + . FI_gene_label "DDHD2^ENSG00000085788.14" ; ID "DDHD2--UBXN8^ENST00000397166.7" ; Parent "DDHD2--UBXN8^DDHD2^ENSG00000085788.14" ; ccdsid "CCDS34883.1" ; exon_id "ENSE00003695665.1" ; exon_number 2 ; gene_id "DDHD2--UBXN8^DDHD2^ENSG00000085788.14" ; gene_name DDHD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164095.7" ; havana_transcript "OTTHUMT00000377251.3" ; hgnc_id "HGNC:29106" ; level 2 ; orig_coord_info "chr8,38232995,38233214,+" ; protein_id "ENSP00000380352.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDHD2--UBXN8^ENST00000397166.7" ; transcript_name "DDHD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
EIF3H--SLC30A8 HAVANA gene 1671 17177 . + . FI_gene_label "EIF3H^ENSG00000147677.11" ; ID "EIF3H--SLC30A8^EIF3H^ENSG00000147677.11" ; exon_id "ENSE00002101437.1" ; exon_number 2 ; gene_id "EIF3H--SLC30A8^EIF3H^ENSG00000147677.11" ; gene_name EIF3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000164919.3" ; havana_transcript "OTTHUMT00000380913.1" ; hgnc_id "HGNC:3273" ; level 1 ; orig_coord_info "chr8,116755952,116755993,-" ; protein_id "ENSP00000276682.4" ; tag basic exp_conf ; transcript_id "EIF3H--SLC30A8^ENST00000276682.8" ; transcript_name "EIF3H-201" ; transcript_support_level 2 ; transcript_type protein_coding
EIF3H--SLC30A8 HAVANA mRNA 1671 17177 . + . FI_gene_label "EIF3H^ENSG00000147677.11" ; ID "EIF3H--SLC30A8^ENST00000276682.8" ; Parent "EIF3H--SLC30A8^EIF3H^ENSG00000147677.11" ; exon_id "ENSE00002101437.1" ; exon_number 2 ; gene_id "EIF3H--SLC30A8^EIF3H^ENSG00000147677.11" ; gene_name EIF3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000164919.3" ; havana_transcript "OTTHUMT00000380913.1" ; hgnc_id "HGNC:3273" ; level 1 ; orig_coord_info "chr8,116755952,116755993,-" ; protein_id "ENSP00000276682.4" ; tag basic exp_conf ; transcript_id "EIF3H--SLC30A8^ENST00000276682.8" ; transcript_name "EIF3H-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
EIF3H--SLC30A8 ENSEMBL gene 23559 40144 . + . FI_gene_label "SLC30A8^ENSG00000164756.12" ; ID "EIF3H--SLC30A8^SLC30A8^ENSG00000164756.12" ; ccdsid "CCDS55272.1" ; exon_id "ENSE00003598822.1" ; exon_number 5 ; gene_id "EIF3H--SLC30A8^SLC30A8^ENSG00000164756.12" ; gene_name SLC30A8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164962.3" ; hgnc_id "HGNC:20303" ; level 3 ; orig_coord_info "chr8,117147030,117147153,+" ; protein_id "ENSP00000407505.2" ; tag basic CCDS ; transcript_id "EIF3H--SLC30A8^ENST00000427715.2" ; transcript_name "SLC30A8-201" ; transcript_support_level 2 ; transcript_type protein_coding
EIF3H--SLC30A8 ENSEMBL mRNA 23559 40144 . + . FI_gene_label "SLC30A8^ENSG00000164756.12" ; ID "EIF3H--SLC30A8^ENST00000427715.2" ; Parent "EIF3H--SLC30A8^SLC30A8^ENSG00000164756.12" ; ccdsid "CCDS55272.1" ; exon_id "ENSE00003598822.1" ; exon_number 5 ; gene_id "EIF3H--SLC30A8^SLC30A8^ENSG00000164756.12" ; gene_name SLC30A8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164962.3" ; hgnc_id "HGNC:20303" ; level 3 ; orig_coord_info "chr8,117147030,117147153,+" ; protein_id "ENSP00000407505.2" ; tag basic CCDS ; transcript_id "EIF3H--SLC30A8^ENST00000427715.2" ; transcript_name "SLC30A8-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
FANCD2--IRAK2 HAVANA gene 46296 60808 . + . FI_gene_label "IRAK2^ENSG00000134070.5" ; ID "FANCD2--IRAK2^IRAK2^ENSG00000134070.5" ; ccdsid "CCDS33697.1" ; exon_id "ENSE00001134699.4" ; exon_number 1 ; gene_id "FANCD2--IRAK2^IRAK2^ENSG00000134070.5" ; gene_name IRAK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155358.2" ; havana_transcript "OTTHUMT00000339623.2" ; hgnc_id "HGNC:6113" ; level 2 ; orig_coord_info "chr3,10164955,10165048,+" ; protein_id "ENSP00000256458.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FANCD2--IRAK2^ENST00000256458.5" ; transcript_name "IRAK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
FANCD2--IRAK2 HAVANA mRNA 46296 60808 . + . FI_gene_label "IRAK2^ENSG00000134070.5" ; ID "FANCD2--IRAK2^ENST00000256458.5" ; Parent "FANCD2--IRAK2^IRAK2^ENSG00000134070.5" ; ccdsid "CCDS33697.1" ; exon_id "ENSE00001134699.4" ; exon_number 1 ; gene_id "FANCD2--IRAK2^IRAK2^ENSG00000134070.5" ; gene_name IRAK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155358.2" ; havana_transcript "OTTHUMT00000339623.2" ; hgnc_id "HGNC:6113" ; level 2 ; orig_coord_info "chr3,10164955,10165048,+" ; protein_id "ENSP00000256458.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FANCD2--IRAK2^ENST00000256458.5" ; transcript_name "IRAK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FANCD2--IRAK2 HAVANA gene 1001 41550 . + . FI_gene_label "FANCD2^ENSG00000144554.12" ; ID "FANCD2--IRAK2^FANCD2^ENSG00000144554.12" ; ccdsid "CCDS2595.1" ; exon_id "ENSE00001218781.1" ; exon_number 2 ; gene_id "FANCD2--IRAK2^FANCD2^ENSG00000144554.12" ; gene_name FANCD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128670.3" ; havana_transcript "OTTHUMT00000250562.2" ; hgnc_id "HGNC:3585" ; level 2 ; orig_coord_info "chr3,10028658,10028721,+" ; protein_id "ENSP00000287647.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "FANCD2--IRAK2^ENST00000287647.7" ; transcript_name "FANCD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
FANCD2--IRAK2 HAVANA mRNA 1001 41550 . + . FI_gene_label "FANCD2^ENSG00000144554.12" ; ID "FANCD2--IRAK2^ENST00000287647.7" ; Parent "FANCD2--IRAK2^FANCD2^ENSG00000144554.12" ; ccdsid "CCDS2595.1" ; exon_id "ENSE00001218781.1" ; exon_number 2 ; gene_id "FANCD2--IRAK2^FANCD2^ENSG00000144554.12" ; gene_name FANCD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128670.3" ; havana_transcript "OTTHUMT00000250562.2" ; hgnc_id "HGNC:3585" ; level 2 ; orig_coord_info "chr3,10028658,10028721,+" ; protein_id "ENSP00000287647.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "FANCD2--IRAK2^ENST00000287647.7" ; transcript_name "FANCD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FANCD2--VHL HAVANA gene 46296 53543 . + . FI_gene_label "VHL^ENSG00000134086.8" ; ID "FANCD2--VHL^VHL^ENSG00000134086.8" ; ccdsid "CCDS2597.1" ; exon_id "ENSE00001930974.2" ; exon_number 1 ; gene_id "FANCD2--VHL^VHL^ENSG00000134086.8" ; gene_name VHL ; gene_type protein_coding ; havana_gene "OTTHUMG00000128668.2" ; havana_transcript "OTTHUMT00000250559.1" ; hgnc_id "HGNC:12687" ; level 2 ; orig_coord_info "chr3,10141848,10142187,+" ; protein_id "ENSP00000256474.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FANCD2--VHL^ENST00000256474.3" ; transcript_name "VHL-201" ; transcript_support_level 1 ; transcript_type protein_coding
FANCD2--VHL HAVANA mRNA 46296 53543 . + . FI_gene_label "VHL^ENSG00000134086.8" ; ID "FANCD2--VHL^ENST00000256474.3" ; Parent "FANCD2--VHL^VHL^ENSG00000134086.8" ; ccdsid "CCDS2597.1" ; exon_id "ENSE00001930974.2" ; exon_number 1 ; gene_id "FANCD2--VHL^VHL^ENSG00000134086.8" ; gene_name VHL ; gene_type protein_coding ; havana_gene "OTTHUMG00000128668.2" ; havana_transcript "OTTHUMT00000250559.1" ; hgnc_id "HGNC:12687" ; level 2 ; orig_coord_info "chr3,10141848,10142187,+" ; protein_id "ENSP00000256474.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FANCD2--VHL^ENST00000256474.3" ; transcript_name "VHL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FANCD2--VHL HAVANA gene 1001 41550 . + . FI_gene_label "FANCD2^ENSG00000144554.12" ; ID "FANCD2--VHL^FANCD2^ENSG00000144554.12" ; ccdsid "CCDS2595.1" ; exon_id "ENSE00001218781.1" ; exon_number 2 ; gene_id "FANCD2--VHL^FANCD2^ENSG00000144554.12" ; gene_name FANCD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128670.3" ; havana_transcript "OTTHUMT00000250562.2" ; hgnc_id "HGNC:3585" ; level 2 ; orig_coord_info "chr3,10028658,10028721,+" ; protein_id "ENSP00000287647.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "FANCD2--VHL^ENST00000287647.7" ; transcript_name "FANCD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
FANCD2--VHL HAVANA mRNA 1001 41550 . + . FI_gene_label "FANCD2^ENSG00000144554.12" ; ID "FANCD2--VHL^ENST00000287647.7" ; Parent "FANCD2--VHL^FANCD2^ENSG00000144554.12" ; ccdsid "CCDS2595.1" ; exon_id "ENSE00001218781.1" ; exon_number 2 ; gene_id "FANCD2--VHL^FANCD2^ENSG00000144554.12" ; gene_name FANCD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128670.3" ; havana_transcript "OTTHUMT00000250562.2" ; hgnc_id "HGNC:3585" ; level 2 ; orig_coord_info "chr3,10028658,10028721,+" ; protein_id "ENSP00000287647.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "FANCD2--VHL^ENST00000287647.7" ; transcript_name "FANCD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXL20--GRB7 HAVANA gene 1898 26528 . + . FI_gene_label "FBXL20^ENSG00000108306.13" ; ID "FBXL20--GRB7^FBXL20^ENSG00000108306.13" ; ccdsid "CCDS32640.1" ; exon_id "ENSE00002727680.2" ; exon_number 1 ; gene_id "FBXL20--GRB7^FBXL20^ENSG00000108306.13" ; gene_name FBXL20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179002.9" ; havana_transcript "OTTHUMT00000444315.4" ; hgnc_id "HGNC:24679" ; level 2 ; orig_coord_info "chr17,39401361,39401402,-" ; protein_id "ENSP00000264658.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FBXL20--GRB7^ENST00000264658.11" ; transcript_name "FBXL20-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXL20--GRB7 HAVANA mRNA 1898 26528 . + . FI_gene_label "FBXL20^ENSG00000108306.13" ; ID "FBXL20--GRB7^ENST00000264658.11" ; Parent "FBXL20--GRB7^FBXL20^ENSG00000108306.13" ; ccdsid "CCDS32640.1" ; exon_id "ENSE00002727680.2" ; exon_number 1 ; gene_id "FBXL20--GRB7^FBXL20^ENSG00000108306.13" ; gene_name FBXL20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179002.9" ; havana_transcript "OTTHUMT00000444315.4" ; hgnc_id "HGNC:24679" ; level 2 ; orig_coord_info "chr17,39401361,39401402,-" ; protein_id "ENSP00000264658.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FBXL20--GRB7^ENST00000264658.11" ; transcript_name "FBXL20-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXL20--GRB7 HAVANA gene 29540 37817 . + . FI_gene_label "GRB7^ENSG00000141738.14" ; ID "FBXL20--GRB7^GRB7^ENSG00000141738.14" ; ccdsid "CCDS11345.1" ; exon_id "ENSE00003687545.1" ; exon_number 2 ; gene_id "FBXL20--GRB7^GRB7^ENSG00000141738.14" ; gene_name GRB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133253.6" ; havana_transcript "OTTHUMT00000257024.3" ; hgnc_id "HGNC:4567" ; level 2 ; orig_coord_info "chr17,39742302,39742456,+" ; protein_id "ENSP00000310771.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FBXL20--GRB7^ENST00000309156.9" ; transcript_name "GRB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXL20--GRB7 HAVANA mRNA 29540 37817 . + . FI_gene_label "GRB7^ENSG00000141738.14" ; ID "FBXL20--GRB7^ENST00000309156.9" ; Parent "FBXL20--GRB7^GRB7^ENSG00000141738.14" ; ccdsid "CCDS11345.1" ; exon_id "ENSE00003687545.1" ; exon_number 2 ; gene_id "FBXL20--GRB7^GRB7^ENSG00000141738.14" ; gene_name GRB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133253.6" ; havana_transcript "OTTHUMT00000257024.3" ; hgnc_id "HGNC:4567" ; level 2 ; orig_coord_info "chr17,39742302,39742456,+" ; protein_id "ENSP00000310771.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FBXL20--GRB7^ENST00000309156.9" ; transcript_name "GRB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXO25--AC240565.1 HAVANA gene 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXO25--AC240565.1 HAVANA mRNA 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AC240565.1^ENST00000276326.9" ; Parent "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GOSR1--LINC00974 HAVANA gene 1001 20898 . + . FI_gene_label "GOSR1^ENSG00000108587.16" ; ID "GOSR1--LINC00974^GOSR1^ENSG00000108587.16" ; ccdsid "CCDS11258.1" ; exon_id "ENSE00002707505.1" ; exon_number 1 ; gene_id "GOSR1--LINC00974^GOSR1^ENSG00000108587.16" ; gene_name GOSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132796.3" ; havana_transcript "OTTHUMT00000256208.2" ; hgnc_id "HGNC:4430" ; level 2 ; orig_coord_info "chr17,30477434,30477464,+" ; protein_id "ENSP00000225724.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "GOSR1--LINC00974^ENST00000225724.9" ; transcript_name "GOSR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GOSR1--LINC00974 HAVANA mRNA 1001 20898 . + . FI_gene_label "GOSR1^ENSG00000108587.16" ; ID "GOSR1--LINC00974^ENST00000225724.9" ; Parent "GOSR1--LINC00974^GOSR1^ENSG00000108587.16" ; ccdsid "CCDS11258.1" ; exon_id "ENSE00002707505.1" ; exon_number 1 ; gene_id "GOSR1--LINC00974^GOSR1^ENSG00000108587.16" ; gene_name GOSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132796.3" ; havana_transcript "OTTHUMT00000256208.2" ; hgnc_id "HGNC:4430" ; level 2 ; orig_coord_info "chr17,30477434,30477464,+" ; protein_id "ENSP00000225724.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "GOSR1--LINC00974^ENST00000225724.9" ; transcript_name "GOSR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GOSR1--RPL19 HAVANA gene 23899 28348 . + . FI_gene_label "RPL19^ENSG00000108298.12" ; ID "GOSR1--RPL19^RPL19^ENSG00000108298.12" ; ccdsid "CCDS42312.1" ; exon_id "ENSE00001533686.1" ; exon_number 1 ; gene_id "GOSR1--RPL19^RPL19^ENSG00000108298.12" ; gene_name RPL19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178979.8" ; havana_transcript "OTTHUMT00000444190.2" ; hgnc_id "HGNC:10312" ; level 2 ; orig_coord_info "chr17,39200345,39200349,+" ; protein_id "ENSP00000225430.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "GOSR1--RPL19^ENST00000225430.9" ; transcript_name "RPL19-201" ; transcript_support_level 1 ; transcript_type protein_coding
GOSR1--RPL19 HAVANA mRNA 23899 28348 . + . FI_gene_label "RPL19^ENSG00000108298.12" ; ID "GOSR1--RPL19^ENST00000225430.9" ; Parent "GOSR1--RPL19^RPL19^ENSG00000108298.12" ; ccdsid "CCDS42312.1" ; exon_id "ENSE00001533686.1" ; exon_number 1 ; gene_id "GOSR1--RPL19^RPL19^ENSG00000108298.12" ; gene_name RPL19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178979.8" ; havana_transcript "OTTHUMT00000444190.2" ; hgnc_id "HGNC:10312" ; level 2 ; orig_coord_info "chr17,39200345,39200349,+" ; protein_id "ENSP00000225430.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "GOSR1--RPL19^ENST00000225430.9" ; transcript_name "RPL19-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GOSR1--RPL19 HAVANA gene 1001 20898 . + . FI_gene_label "GOSR1^ENSG00000108587.16" ; ID "GOSR1--RPL19^GOSR1^ENSG00000108587.16" ; ccdsid "CCDS11258.1" ; exon_id "ENSE00002707505.1" ; exon_number 1 ; gene_id "GOSR1--RPL19^GOSR1^ENSG00000108587.16" ; gene_name GOSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132796.3" ; havana_transcript "OTTHUMT00000256208.2" ; hgnc_id "HGNC:4430" ; level 2 ; orig_coord_info "chr17,30477434,30477464,+" ; protein_id "ENSP00000225724.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "GOSR1--RPL19^ENST00000225724.9" ; transcript_name "GOSR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GOSR1--RPL19 HAVANA mRNA 1001 20898 . + . FI_gene_label "GOSR1^ENSG00000108587.16" ; ID "GOSR1--RPL19^ENST00000225724.9" ; Parent "GOSR1--RPL19^GOSR1^ENSG00000108587.16" ; ccdsid "CCDS11258.1" ; exon_id "ENSE00002707505.1" ; exon_number 1 ; gene_id "GOSR1--RPL19^GOSR1^ENSG00000108587.16" ; gene_name GOSR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132796.3" ; havana_transcript "OTTHUMT00000256208.2" ; hgnc_id "HGNC:4430" ; level 2 ; orig_coord_info "chr17,30477434,30477464,+" ; protein_id "ENSP00000225724.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "GOSR1--RPL19^ENST00000225724.9" ; transcript_name "GOSR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRAMD1A--CD22 HAVANA gene 24809 37486 . + . FI_gene_label "CD22^ENSG00000012124.17" ; ID "GRAMD1A--CD22^CD22^ENSG00000012124.17" ; ccdsid "CCDS12457.1" ; exon_id "ENSE00003651873.1" ; exon_number 2 ; gene_id "GRAMD1A--CD22^CD22^ENSG00000012124.17" ; gene_name CD22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183298.5" ; havana_transcript "OTTHUMT00000466099.2" ; hgnc_id "HGNC:1643" ; level 2 ; orig_coord_info "chr19,35332041,35332074,+" ; protein_id "ENSP00000085219.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GRAMD1A--CD22^ENST00000085219.10" ; transcript_name "CD22-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRAMD1A--CD22 HAVANA mRNA 24809 37486 . + . FI_gene_label "CD22^ENSG00000012124.17" ; ID "GRAMD1A--CD22^ENST00000085219.10" ; Parent "GRAMD1A--CD22^CD22^ENSG00000012124.17" ; ccdsid "CCDS12457.1" ; exon_id "ENSE00003651873.1" ; exon_number 2 ; gene_id "GRAMD1A--CD22^CD22^ENSG00000012124.17" ; gene_name CD22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000183298.5" ; havana_transcript "OTTHUMT00000466099.2" ; hgnc_id "HGNC:1643" ; level 2 ; orig_coord_info "chr19,35332041,35332074,+" ; protein_id "ENSP00000085219.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GRAMD1A--CD22^ENST00000085219.10" ; transcript_name "CD22-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRAMD1A--CD22 HAVANA gene 4277 20111 . + . FI_gene_label "GRAMD1A^ENSG00000089351.15" ; ID "GRAMD1A--CD22^GRAMD1A^ENSG00000089351.15" ; ccdsid "CCDS42546.1" ; exon_id "ENSE00003482635.1" ; exon_number 1 ; gene_id "GRAMD1A--CD22^GRAMD1A^ENSG00000089351.15" ; gene_name GRAMD1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000182464.5" ; havana_transcript "OTTHUMT00000461557.1" ; hgnc_id "HGNC:29305" ; level 2 ; orig_coord_info "chr19,35000479,35000486,+" ; protein_id "ENSP00000441032.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "GRAMD1A--CD22^ENST00000317991.10" ; transcript_name "GRAMD1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRAMD1A--CD22 HAVANA mRNA 4277 20111 . + . FI_gene_label "GRAMD1A^ENSG00000089351.15" ; ID "GRAMD1A--CD22^ENST00000317991.10" ; Parent "GRAMD1A--CD22^GRAMD1A^ENSG00000089351.15" ; ccdsid "CCDS42546.1" ; exon_id "ENSE00003482635.1" ; exon_number 1 ; gene_id "GRAMD1A--CD22^GRAMD1A^ENSG00000089351.15" ; gene_name GRAMD1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000182464.5" ; havana_transcript "OTTHUMT00000461557.1" ; hgnc_id "HGNC:29305" ; level 2 ; orig_coord_info "chr19,35000479,35000486,+" ; protein_id "ENSP00000441032.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "GRAMD1A--CD22^ENST00000317991.10" ; transcript_name "GRAMD1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRAMD1A--FFAR1 HAVANA gene 23114 25424 . + . FI_gene_label "FFAR1^ENSG00000126266.3" ; ID "GRAMD1A--FFAR1^FFAR1^ENSG00000126266.3" ; ccdsid "CCDS12458.1" ; exon_id "ENSE00000862788.3" ; exon_number 1 ; gene_id "GRAMD1A--FFAR1^FFAR1^ENSG00000126266.3" ; gene_name FFAR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188261.1" ; havana_transcript "OTTHUMT00000476787.1" ; hgnc_id "HGNC:4498" ; level 2 ; orig_coord_info "chr19,35351552,35352451,+" ; protein_id "ENSP00000246553.2" ; tag basic appris_principal_1 CCDS ; transcript_id "GRAMD1A--FFAR1^ENST00000246553.3" ; transcript_name "FFAR1-201" ; transcript_support_level NA ; transcript_type protein_coding
GRAMD1A--FFAR1 HAVANA mRNA 23114 25424 . + . FI_gene_label "FFAR1^ENSG00000126266.3" ; ID "GRAMD1A--FFAR1^ENST00000246553.3" ; Parent "GRAMD1A--FFAR1^FFAR1^ENSG00000126266.3" ; ccdsid "CCDS12458.1" ; exon_id "ENSE00000862788.3" ; exon_number 1 ; gene_id "GRAMD1A--FFAR1^FFAR1^ENSG00000126266.3" ; gene_name FFAR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188261.1" ; havana_transcript "OTTHUMT00000476787.1" ; hgnc_id "HGNC:4498" ; level 2 ; orig_coord_info "chr19,35351552,35352451,+" ; protein_id "ENSP00000246553.2" ; tag basic appris_principal_1 CCDS ; transcript_id "GRAMD1A--FFAR1^ENST00000246553.3" ; transcript_name "FFAR1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
GRAMD1A--FFAR1 HAVANA gene 4277 20111 . + . FI_gene_label "GRAMD1A^ENSG00000089351.15" ; ID "GRAMD1A--FFAR1^GRAMD1A^ENSG00000089351.15" ; ccdsid "CCDS42546.1" ; exon_id "ENSE00003482635.1" ; exon_number 1 ; gene_id "GRAMD1A--FFAR1^GRAMD1A^ENSG00000089351.15" ; gene_name GRAMD1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000182464.5" ; havana_transcript "OTTHUMT00000461557.1" ; hgnc_id "HGNC:29305" ; level 2 ; orig_coord_info "chr19,35000479,35000486,+" ; protein_id "ENSP00000441032.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "GRAMD1A--FFAR1^ENST00000317991.10" ; transcript_name "GRAMD1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRAMD1A--FFAR1 HAVANA mRNA 4277 20111 . + . FI_gene_label "GRAMD1A^ENSG00000089351.15" ; ID "GRAMD1A--FFAR1^ENST00000317991.10" ; Parent "GRAMD1A--FFAR1^GRAMD1A^ENSG00000089351.15" ; ccdsid "CCDS42546.1" ; exon_id "ENSE00003482635.1" ; exon_number 1 ; gene_id "GRAMD1A--FFAR1^GRAMD1A^ENSG00000089351.15" ; gene_name GRAMD1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000182464.5" ; havana_transcript "OTTHUMT00000461557.1" ; hgnc_id "HGNC:29305" ; level 2 ; orig_coord_info "chr19,35000479,35000486,+" ; protein_id "ENSP00000441032.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "GRAMD1A--FFAR1^ENST00000317991.10" ; transcript_name "GRAMD1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IL17RE--GPR89A HAVANA gene 15301 32285 . + . FI_gene_label "GPR89A^ENSG00000117262.19" ; ID "IL17RE--GPR89A^GPR89A^ENSG00000117262.19" ; ccdsid "CCDS72857.1" ; exon_id "ENSE00003846947.1" ; exon_number 1 ; gene_id "IL17RE--GPR89A^GPR89A^ENSG00000117262.19" ; gene_name GPR89A ; gene_type protein_coding ; havana_gene "OTTHUMG00000013738.6" ; havana_transcript "OTTHUMT00000038507.3" ; hgnc_id "HGNC:31984" ; level 2 ; orig_coord_info "chr1,145608134,145608175,+" ; protein_id "ENSP00000319673.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IL17RE--GPR89A^ENST00000313835.14" ; transcript_name "GPR89A-201" ; transcript_support_level 1 ; transcript_type protein_coding
IL17RE--GPR89A HAVANA mRNA 15301 32285 . + . FI_gene_label "GPR89A^ENSG00000117262.19" ; ID "IL17RE--GPR89A^ENST00000313835.14" ; Parent "IL17RE--GPR89A^GPR89A^ENSG00000117262.19" ; ccdsid "CCDS72857.1" ; exon_id "ENSE00003846947.1" ; exon_number 1 ; gene_id "IL17RE--GPR89A^GPR89A^ENSG00000117262.19" ; gene_name GPR89A ; gene_type protein_coding ; havana_gene "OTTHUMG00000013738.6" ; havana_transcript "OTTHUMT00000038507.3" ; hgnc_id "HGNC:31984" ; level 2 ; orig_coord_info "chr1,145608134,145608175,+" ; protein_id "ENSP00000319673.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IL17RE--GPR89A^ENST00000313835.14" ; transcript_name "GPR89A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IL17RE--GPR89A HAVANA gene 1237 12295 . + . FI_gene_label "IL17RE^ENSG00000163701.19" ; ID "IL17RE--GPR89A^IL17RE^ENSG00000163701.19" ; ccdsid "CCDS2589.1" ; exon_id "ENSE00001673130.1" ; exon_number 1 ; gene_id "IL17RE--GPR89A^IL17RE^ENSG00000163701.19" ; gene_name IL17RE ; gene_type protein_coding ; havana_gene "OTTHUMG00000128649.5" ; havana_transcript "OTTHUMT00000250529.2" ; hgnc_id "HGNC:18439" ; level 2 ; orig_coord_info "chr3,9902933,9903064,+" ; protein_id "ENSP00000373325.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "IL17RE--GPR89A^ENST00000383814.8" ; transcript_name "IL17RE-201" ; transcript_support_level 1 ; transcript_type protein_coding
IL17RE--GPR89A HAVANA mRNA 1237 12295 . + . FI_gene_label "IL17RE^ENSG00000163701.19" ; ID "IL17RE--GPR89A^ENST00000383814.8" ; Parent "IL17RE--GPR89A^IL17RE^ENSG00000163701.19" ; ccdsid "CCDS2589.1" ; exon_id "ENSE00001673130.1" ; exon_number 1 ; gene_id "IL17RE--GPR89A^IL17RE^ENSG00000163701.19" ; gene_name IL17RE ; gene_type protein_coding ; havana_gene "OTTHUMG00000128649.5" ; havana_transcript "OTTHUMT00000250529.2" ; hgnc_id "HGNC:18439" ; level 2 ; orig_coord_info "chr3,9902933,9903064,+" ; protein_id "ENSP00000373325.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "IL17RE--GPR89A^ENST00000383814.8" ; transcript_name "IL17RE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IL17RE--HTR1F HAVANA gene 15301 20686 . + . FI_gene_label "HTR1F^ENSG00000179097.7" ; ID "IL17RE--HTR1F^HTR1F^ENSG00000179097.7" ; ccdsid "CCDS2920.1" ; exon_id "ENSE00001220697.7" ; exon_number 3 ; gene_id "IL17RE--HTR1F^HTR1F^ENSG00000179097.7" ; gene_name HTR1F ; gene_type protein_coding ; havana_gene "OTTHUMG00000159008.1" ; havana_transcript "OTTHUMT00000352890.1" ; hgnc_id "HGNC:5292" ; level 2 ; orig_coord_info "chr3,87990750,87991847,+" ; protein_id "ENSP00000322924.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IL17RE--HTR1F^ENST00000319595.7" ; transcript_name "HTR1F-201" ; transcript_support_level NA ; transcript_type protein_coding
IL17RE--HTR1F HAVANA mRNA 15301 20686 . + . FI_gene_label "HTR1F^ENSG00000179097.7" ; ID "IL17RE--HTR1F^ENST00000319595.7" ; Parent "IL17RE--HTR1F^HTR1F^ENSG00000179097.7" ; ccdsid "CCDS2920.1" ; exon_id "ENSE00001220697.7" ; exon_number 3 ; gene_id "IL17RE--HTR1F^HTR1F^ENSG00000179097.7" ; gene_name HTR1F ; gene_type protein_coding ; havana_gene "OTTHUMG00000159008.1" ; havana_transcript "OTTHUMT00000352890.1" ; hgnc_id "HGNC:5292" ; level 2 ; orig_coord_info "chr3,87990750,87991847,+" ; protein_id "ENSP00000322924.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IL17RE--HTR1F^ENST00000319595.7" ; transcript_name "HTR1F-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
IL17RE--HTR1F HAVANA gene 1237 12295 . + . FI_gene_label "IL17RE^ENSG00000163701.19" ; ID "IL17RE--HTR1F^IL17RE^ENSG00000163701.19" ; ccdsid "CCDS2589.1" ; exon_id "ENSE00001673130.1" ; exon_number 1 ; gene_id "IL17RE--HTR1F^IL17RE^ENSG00000163701.19" ; gene_name IL17RE ; gene_type protein_coding ; havana_gene "OTTHUMG00000128649.5" ; havana_transcript "OTTHUMT00000250529.2" ; hgnc_id "HGNC:18439" ; level 2 ; orig_coord_info "chr3,9902933,9903064,+" ; protein_id "ENSP00000373325.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "IL17RE--HTR1F^ENST00000383814.8" ; transcript_name "IL17RE-201" ; transcript_support_level 1 ; transcript_type protein_coding
IL17RE--HTR1F HAVANA mRNA 1237 12295 . + . FI_gene_label "IL17RE^ENSG00000163701.19" ; ID "IL17RE--HTR1F^ENST00000383814.8" ; Parent "IL17RE--HTR1F^IL17RE^ENSG00000163701.19" ; ccdsid "CCDS2589.1" ; exon_id "ENSE00001673130.1" ; exon_number 1 ; gene_id "IL17RE--HTR1F^IL17RE^ENSG00000163701.19" ; gene_name IL17RE ; gene_type protein_coding ; havana_gene "OTTHUMG00000128649.5" ; havana_transcript "OTTHUMT00000250529.2" ; hgnc_id "HGNC:18439" ; level 2 ; orig_coord_info "chr3,9902933,9903064,+" ; protein_id "ENSP00000373325.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "IL17RE--HTR1F^ENST00000383814.8" ; transcript_name "IL17RE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LASP1--BLMH HAVANA gene 18741 32177 . + . FI_gene_label "BLMH^ENSG00000108578.15" ; ID "LASP1--BLMH^BLMH^ENSG00000108578.15" ; ccdsid "CCDS32604.1" ; exon_id "ENSE00003844739.1" ; exon_number 1 ; gene_id "LASP1--BLMH^BLMH^ENSG00000108578.15" ; gene_name BLMH ; gene_type protein_coding ; havana_gene "OTTHUMG00000179756.6" ; havana_transcript "OTTHUMT00000447940.3" ; hgnc_id "HGNC:1059" ; level 2 ; orig_coord_info "chr17,30291807,30291819,-" ; protein_id "ENSP00000261714.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LASP1--BLMH^ENST00000261714.11" ; transcript_name "BLMH-201" ; transcript_support_level 1 ; transcript_type protein_coding
LASP1--BLMH HAVANA mRNA 18741 32177 . + . FI_gene_label "BLMH^ENSG00000108578.15" ; ID "LASP1--BLMH^ENST00000261714.11" ; Parent "LASP1--BLMH^BLMH^ENSG00000108578.15" ; ccdsid "CCDS32604.1" ; exon_id "ENSE00003844739.1" ; exon_number 1 ; gene_id "LASP1--BLMH^BLMH^ENSG00000108578.15" ; gene_name BLMH ; gene_type protein_coding ; havana_gene "OTTHUMG00000179756.6" ; havana_transcript "OTTHUMT00000447940.3" ; hgnc_id "HGNC:1059" ; level 2 ; orig_coord_info "chr17,30291807,30291819,-" ; protein_id "ENSP00000261714.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LASP1--BLMH^ENST00000261714.11" ; transcript_name "BLMH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LASP1--BLMH HAVANA gene 1200 15628 . + . FI_gene_label "LASP1^ENSG00000002834.18" ; ID "LASP1--BLMH^LASP1^ENSG00000002834.18" ; ccdsid "CCDS11331.1" ; exon_id "ENSE00002711323.2" ; exon_number 1 ; gene_id "LASP1--BLMH^LASP1^ENSG00000002834.18" ; gene_name LASP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133182.8" ; havana_transcript "OTTHUMT00000256890.4" ; hgnc_id "HGNC:6513" ; level 2 ; orig_coord_info "chr17,38870190,38870258,+" ; protein_id "ENSP00000325240.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LASP1--BLMH^ENST00000318008.11" ; transcript_name "LASP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LASP1--BLMH HAVANA mRNA 1200 15628 . + . FI_gene_label "LASP1^ENSG00000002834.18" ; ID "LASP1--BLMH^ENST00000318008.11" ; Parent "LASP1--BLMH^LASP1^ENSG00000002834.18" ; ccdsid "CCDS11331.1" ; exon_id "ENSE00002711323.2" ; exon_number 1 ; gene_id "LASP1--BLMH^LASP1^ENSG00000002834.18" ; gene_name LASP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133182.8" ; havana_transcript "OTTHUMT00000256890.4" ; hgnc_id "HGNC:6513" ; level 2 ; orig_coord_info "chr17,38870190,38870258,+" ; protein_id "ENSP00000325240.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LASP1--BLMH^ENST00000318008.11" ; transcript_name "LASP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC00624--AATF HAVANA gene 21802 29710 . + . FI_gene_label "AATF^ENSG00000275700.6" ; ID "LINC00624--AATF^AATF^ENSG00000275700.6" ; exon_id "ENSE00003729439.1" ; exon_number 1 ; gene_id "LINC00624--AATF^AATF^ENSG00000275700.6" ; gene_name AATF ; gene_type protein_coding ; havana_gene "OTTHUMG00000188458.3" ; havana_transcript "OTTHUMT00000477301.1" ; hgnc_id "HGNC:19235" ; level 2 ; orig_coord_info "chr17,36988658,36988720,+" ; protein_id "ENSP00000480472.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "LINC00624--AATF^ENST00000610798.4" ; transcript_name "AATF-201" ; transcript_support_level 2 ; transcript_type protein_coding
LINC00624--AATF HAVANA mRNA 21802 29710 . + . FI_gene_label "AATF^ENSG00000275700.6" ; ID "LINC00624--AATF^ENST00000610798.4" ; Parent "LINC00624--AATF^AATF^ENSG00000275700.6" ; exon_id "ENSE00003729439.1" ; exon_number 1 ; gene_id "LINC00624--AATF^AATF^ENSG00000275700.6" ; gene_name AATF ; gene_type protein_coding ; havana_gene "OTTHUMG00000188458.3" ; havana_transcript "OTTHUMT00000477301.1" ; hgnc_id "HGNC:19235" ; level 2 ; orig_coord_info "chr17,36988658,36988720,+" ; protein_id "ENSP00000480472.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "LINC00624--AATF^ENST00000610798.4" ; transcript_name "AATF-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NBPF10--NR1D1 HAVANA gene 84022 90158 . + . FI_gene_label "NR1D1^ENSG00000126368.6" ; ID "NBPF10--NR1D1^NR1D1^ENSG00000126368.6" ; ccdsid "CCDS11361.1" ; exon_id "ENSE00001058054.3" ; exon_number 1 ; gene_id "NBPF10--NR1D1^NR1D1^ENSG00000126368.6" ; gene_name NR1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133327.3" ; havana_transcript "OTTHUMT00000257135.2" ; hgnc_id "HGNC:7962" ; level 2 ; orig_coord_info "chr17,40100064,40100094,-" ; protein_id "ENSP00000246672.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NBPF10--NR1D1^ENST00000246672.4" ; transcript_name "NR1D1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NBPF10--NR1D1 HAVANA mRNA 84022 90158 . + . FI_gene_label "NR1D1^ENSG00000126368.6" ; ID "NBPF10--NR1D1^ENST00000246672.4" ; Parent "NBPF10--NR1D1^NR1D1^ENSG00000126368.6" ; ccdsid "CCDS11361.1" ; exon_id "ENSE00001058054.3" ; exon_number 1 ; gene_id "NBPF10--NR1D1^NR1D1^ENSG00000126368.6" ; gene_name NR1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133327.3" ; havana_transcript "OTTHUMT00000257135.2" ; hgnc_id "HGNC:7962" ; level 2 ; orig_coord_info "chr17,40100064,40100094,-" ; protein_id "ENSP00000246672.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NBPF10--NR1D1^ENST00000246672.4" ; transcript_name "NR1D1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NBPF10--NR1D1 HAVANA gene 6228 81021 . + . FI_gene_label "NBPF10^ENSG00000271425.9" ; ID "NBPF10--NR1D1^NBPF10^ENSG00000271425.9" ; ccdsid "CCDS76206.1" ; exon_id "ENSE00003847712.1" ; exon_number 1 ; gene_id "NBPF10--NR1D1^NBPF10^ENSG00000271425.9" ; gene_name NBPF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013757.25" ; havana_transcript "OTTHUMT00000038550.7" ; hgnc_id "HGNC:31992" ; level 2 ; orig_coord_info "chr1,146144595,146144769,-" ; protein_id "ENSP00000463957.6" ; tag non_canonical_TEC inferred_exon_combination basic appris_principal_1 CCDS ; transcript_id "NBPF10--NR1D1^ENST00000583866.9" ; transcript_name "NBPF10-201" ; transcript_support_level 5 ; transcript_type protein_coding
NBPF10--NR1D1 HAVANA mRNA 6228 81021 . + . FI_gene_label "NBPF10^ENSG00000271425.9" ; ID "NBPF10--NR1D1^ENST00000583866.9" ; Parent "NBPF10--NR1D1^NBPF10^ENSG00000271425.9" ; ccdsid "CCDS76206.1" ; exon_id "ENSE00003847712.1" ; exon_number 1 ; gene_id "NBPF10--NR1D1^NBPF10^ENSG00000271425.9" ; gene_name NBPF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013757.25" ; havana_transcript "OTTHUMT00000038550.7" ; hgnc_id "HGNC:31992" ; level 2 ; orig_coord_info "chr1,146144595,146144769,-" ; protein_id "ENSP00000463957.6" ; tag non_canonical_TEC inferred_exon_combination basic appris_principal_1 CCDS ; transcript_id "NBPF10--NR1D1^ENST00000583866.9" ; transcript_name "NBPF10-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NEUROD2--ITPR1 HAVANA gene 2858 7010 . + . FI_gene_label "NEUROD2^ENSG00000171532.5" ; ID "NEUROD2--ITPR1^NEUROD2^ENSG00000171532.5" ; ccdsid "CCDS11338.1" ; exon_id "ENSE00001201196.6" ; exon_number 2 ; gene_id "NEUROD2--ITPR1^NEUROD2^ENSG00000171532.5" ; gene_name NEUROD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133211.3" ; havana_transcript "OTTHUMT00000256931.3" ; hgnc_id "HGNC:7763" ; level 2 ; orig_coord_info "chr17,39605454,39606599,-" ; protein_id "ENSP00000306754.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEUROD2--ITPR1^ENST00000302584.5" ; transcript_name "NEUROD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NEUROD2--ITPR1 HAVANA mRNA 2858 7010 . + . FI_gene_label "NEUROD2^ENSG00000171532.5" ; ID "NEUROD2--ITPR1^ENST00000302584.5" ; Parent "NEUROD2--ITPR1^NEUROD2^ENSG00000171532.5" ; ccdsid "CCDS11338.1" ; exon_id "ENSE00001201196.6" ; exon_number 2 ; gene_id "NEUROD2--ITPR1^NEUROD2^ENSG00000171532.5" ; gene_name NEUROD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133211.3" ; havana_transcript "OTTHUMT00000256931.3" ; hgnc_id "HGNC:7763" ; level 2 ; orig_coord_info "chr17,39605454,39606599,-" ; protein_id "ENSP00000306754.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEUROD2--ITPR1^ENST00000302584.5" ; transcript_name "NEUROD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NEUROD2--ITPR1 ENSEMBL gene 10246 102143 . + . FI_gene_label "ITPR1^ENSG00000150995.20" ; ID "NEUROD2--ITPR1^ITPR1^ENSG00000150995.20" ; ccdsid "CCDS54551.1" ; exon_id "ENSE00003473040.1" ; exon_number 3 ; gene_id "NEUROD2--ITPR1^ITPR1^ENSG00000150995.20" ; gene_name ITPR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154996.16" ; hgnc_id "HGNC:6180" ; level 3 ; orig_coord_info "chr3,4516492,4516583,+" ; protein_id "ENSP00000306253.8" ; tag basic CCDS ; transcript_id "NEUROD2--ITPR1^ENST00000302640.12" ; transcript_name "ITPR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
NEUROD2--ITPR1 ENSEMBL mRNA 10246 102143 . + . FI_gene_label "ITPR1^ENSG00000150995.20" ; ID "NEUROD2--ITPR1^ENST00000302640.12" ; Parent "NEUROD2--ITPR1^ITPR1^ENSG00000150995.20" ; ccdsid "CCDS54551.1" ; exon_id "ENSE00003473040.1" ; exon_number 3 ; gene_id "NEUROD2--ITPR1^ITPR1^ENSG00000150995.20" ; gene_name ITPR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154996.16" ; hgnc_id "HGNC:6180" ; level 3 ; orig_coord_info "chr3,4516492,4516583,+" ; protein_id "ENSP00000306253.8" ; tag basic CCDS ; transcript_id "NEUROD2--ITPR1^ENST00000302640.12" ; transcript_name "ITPR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2NLA--NR1D1 HAVANA gene 11677 17813 . + . FI_gene_label "NR1D1^ENSG00000126368.6" ; ID "NOTCH2NLA--NR1D1^NR1D1^ENSG00000126368.6" ; ccdsid "CCDS11361.1" ; exon_id "ENSE00001058054.3" ; exon_number 1 ; gene_id "NOTCH2NLA--NR1D1^NR1D1^ENSG00000126368.6" ; gene_name NR1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133327.3" ; havana_transcript "OTTHUMT00000257135.2" ; hgnc_id "HGNC:7962" ; level 2 ; orig_coord_info "chr17,40100064,40100094,-" ; protein_id "ENSP00000246672.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2NLA--NR1D1^ENST00000246672.4" ; transcript_name "NR1D1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2NLA--NR1D1 HAVANA mRNA 11677 17813 . + . FI_gene_label "NR1D1^ENSG00000126368.6" ; ID "NOTCH2NLA--NR1D1^ENST00000246672.4" ; Parent "NOTCH2NLA--NR1D1^NR1D1^ENSG00000126368.6" ; ccdsid "CCDS11361.1" ; exon_id "ENSE00001058054.3" ; exon_number 1 ; gene_id "NOTCH2NLA--NR1D1^NR1D1^ENSG00000126368.6" ; gene_name NR1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133327.3" ; havana_transcript "OTTHUMT00000257135.2" ; hgnc_id "HGNC:7962" ; level 2 ; orig_coord_info "chr17,40100064,40100094,-" ; protein_id "ENSP00000246672.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2NLA--NR1D1^ENST00000246672.4" ; transcript_name "NR1D1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2NLA--NR1D1 HAVANA gene 1001 6124 . + . FI_gene_label "NOTCH2NLA^ENSG00000264343.6" ; ID "NOTCH2NLA--NR1D1^NOTCH2NLA^ENSG00000264343.6" ; ccdsid "CCDS72880.1" ; exon_id "ENSE00003568476.1" ; exon_number 2 ; gene_id "NOTCH2NLA--NR1D1^NOTCH2NLA^ENSG00000264343.6" ; gene_name NOTCH2NLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000013754.5" ; havana_transcript "OTTHUMT00000038545.3" ; hgnc_id "HGNC:31862" ; level 2 ; orig_coord_info "chr1,146189300,146189337,-" ; protein_id "ENSP00000354929.6" ; tag basic appris_principal_4 CCDS ; transcript_id "NOTCH2NLA--NR1D1^ENST00000362074.7" ; transcript_name "NOTCH2NLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2NLA--NR1D1 HAVANA mRNA 1001 6124 . + . FI_gene_label "NOTCH2NLA^ENSG00000264343.6" ; ID "NOTCH2NLA--NR1D1^ENST00000362074.7" ; Parent "NOTCH2NLA--NR1D1^NOTCH2NLA^ENSG00000264343.6" ; ccdsid "CCDS72880.1" ; exon_id "ENSE00003568476.1" ; exon_number 2 ; gene_id "NOTCH2NLA--NR1D1^NOTCH2NLA^ENSG00000264343.6" ; gene_name NOTCH2NLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000013754.5" ; havana_transcript "OTTHUMT00000038545.3" ; hgnc_id "HGNC:31862" ; level 2 ; orig_coord_info "chr1,146189300,146189337,-" ; protein_id "ENSP00000354929.6" ; tag basic appris_principal_4 CCDS ; transcript_id "NOTCH2NLA--NR1D1^ENST00000362074.7" ; transcript_name "NOTCH2NLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2NLC--NR1D1 HAVANA gene 14594 20730 . + . FI_gene_label "NR1D1^ENSG00000126368.6" ; ID "NOTCH2NLC--NR1D1^NR1D1^ENSG00000126368.6" ; ccdsid "CCDS11361.1" ; exon_id "ENSE00001058054.3" ; exon_number 1 ; gene_id "NOTCH2NLC--NR1D1^NR1D1^ENSG00000126368.6" ; gene_name NR1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133327.3" ; havana_transcript "OTTHUMT00000257135.2" ; hgnc_id "HGNC:7962" ; level 2 ; orig_coord_info "chr17,40100064,40100094,-" ; protein_id "ENSP00000246672.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2NLC--NR1D1^ENST00000246672.4" ; transcript_name "NR1D1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2NLC--NR1D1 HAVANA mRNA 14594 20730 . + . FI_gene_label "NR1D1^ENSG00000126368.6" ; ID "NOTCH2NLC--NR1D1^ENST00000246672.4" ; Parent "NOTCH2NLC--NR1D1^NR1D1^ENSG00000126368.6" ; ccdsid "CCDS11361.1" ; exon_id "ENSE00001058054.3" ; exon_number 1 ; gene_id "NOTCH2NLC--NR1D1^NR1D1^ENSG00000126368.6" ; gene_name NR1D1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133327.3" ; havana_transcript "OTTHUMT00000257135.2" ; hgnc_id "HGNC:7962" ; level 2 ; orig_coord_info "chr17,40100064,40100094,-" ; protein_id "ENSP00000246672.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2NLC--NR1D1^ENST00000246672.4" ; transcript_name "NR1D1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2NLC--NR1D1 ENSEMBL gene 2310 11593 . + . FI_gene_label "NOTCH2NLC^ENSG00000286219.1" ; ID "NOTCH2NLC--NR1D1^NOTCH2NLC^ENSG00000286219.1" ; ccdsid "CCDS86015.1" ; exon_id "ENSE00003690199.1" ; exon_number 3 ; gene_id "NOTCH2NLC--NR1D1^NOTCH2NLC^ENSG00000286219.1" ; gene_name NOTCH2NLC ; gene_type protein_coding ; havana_gene "OTTHUMG00000193481.1" ; hgnc_id "HGNC:53924" ; level 3 ; orig_coord_info "chr1,149430978,149431015,+" ; protein_id "ENSP00000462298.1" ; tag basic appris_principal_4 CCDS ; transcript_id "NOTCH2NLC--NR1D1^ENST00000578189.1" ; transcript_name "NOTCH2NLC-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2NLC--NR1D1 ENSEMBL mRNA 2310 11593 . + . FI_gene_label "NOTCH2NLC^ENSG00000286219.1" ; ID "NOTCH2NLC--NR1D1^ENST00000578189.1" ; Parent "NOTCH2NLC--NR1D1^NOTCH2NLC^ENSG00000286219.1" ; ccdsid "CCDS86015.1" ; exon_id "ENSE00003690199.1" ; exon_number 3 ; gene_id "NOTCH2NLC--NR1D1^NOTCH2NLC^ENSG00000286219.1" ; gene_name NOTCH2NLC ; gene_type protein_coding ; havana_gene "OTTHUMG00000193481.1" ; hgnc_id "HGNC:53924" ; level 3 ; orig_coord_info "chr1,149430978,149431015,+" ; protein_id "ENSP00000462298.1" ; tag basic appris_principal_4 CCDS ; transcript_id "NOTCH2NLC--NR1D1^ENST00000578189.1" ; transcript_name "NOTCH2NLC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OGDH--CCM2 HAVANA gene 1056 23157 . + . FI_gene_label "OGDH^ENSG00000105953.15" ; ID "OGDH--CCM2^OGDH^ENSG00000105953.15" ; ccdsid "CCDS34627.1" ; exon_id "ENSE00001192073.3" ; exon_number 2 ; gene_id "OGDH--CCM2^OGDH^ENSG00000105953.15" ; gene_name OGDH ; gene_type protein_coding ; havana_gene "OTTHUMG00000155304.3" ; havana_transcript "OTTHUMT00000339391.2" ; hgnc_id "HGNC:8124" ; level 2 ; orig_coord_info "chr7,44624344,44624565,+" ; protein_id "ENSP00000222673.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "OGDH--CCM2^ENST00000222673.6" ; transcript_name "OGDH-201" ; transcript_support_level 1 ; transcript_type protein_coding
OGDH--CCM2 HAVANA mRNA 1056 23157 . + . FI_gene_label "OGDH^ENSG00000105953.15" ; ID "OGDH--CCM2^ENST00000222673.6" ; Parent "OGDH--CCM2^OGDH^ENSG00000105953.15" ; ccdsid "CCDS34627.1" ; exon_id "ENSE00001192073.3" ; exon_number 2 ; gene_id "OGDH--CCM2^OGDH^ENSG00000105953.15" ; gene_name OGDH ; gene_type protein_coding ; havana_gene "OTTHUMG00000155304.3" ; havana_transcript "OTTHUMT00000339391.2" ; hgnc_id "HGNC:8124" ; level 2 ; orig_coord_info "chr7,44624344,44624565,+" ; protein_id "ENSP00000222673.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "OGDH--CCM2^ENST00000222673.6" ; transcript_name "OGDH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OGDH--CCM2 HAVANA gene 26884 42827 . + . FI_gene_label "CCM2^ENSG00000136280.17" ; ID "OGDH--CCM2^CCM2^ENSG00000136280.17" ; ccdsid "CCDS5500.1" ; exon_id "ENSE00001947712.2" ; exon_number 1 ; gene_id "OGDH--CCM2^CCM2^ENSG00000136280.17" ; gene_name CCM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129246.5" ; havana_transcript "OTTHUMT00000251348.1" ; hgnc_id "HGNC:21708" ; level 2 ; orig_coord_info "chr7,45000334,45000363,+" ; protein_id "ENSP00000258781.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "OGDH--CCM2^ENST00000258781.11" ; transcript_name "CCM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
OGDH--CCM2 HAVANA mRNA 26884 42827 . + . FI_gene_label "CCM2^ENSG00000136280.17" ; ID "OGDH--CCM2^ENST00000258781.11" ; Parent "OGDH--CCM2^CCM2^ENSG00000136280.17" ; ccdsid "CCDS5500.1" ; exon_id "ENSE00001947712.2" ; exon_number 1 ; gene_id "OGDH--CCM2^CCM2^ENSG00000136280.17" ; gene_name CCM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129246.5" ; havana_transcript "OTTHUMT00000251348.1" ; hgnc_id "HGNC:21708" ; level 2 ; orig_coord_info "chr7,45000334,45000363,+" ; protein_id "ENSP00000258781.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "OGDH--CCM2^ENST00000258781.11" ; transcript_name "CCM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PDE4DIP--EFCAB5 HAVANA gene 20335 45102 . + . FI_gene_label "PDE4DIP^ENSG00000178104.19" ; ID "PDE4DIP--EFCAB5^PDE4DIP^ENSG00000178104.19" ; ccdsid "CCDS72894.1" ; exon_id "ENSE00001212743.8" ; exon_number 1 ; gene_id "PDE4DIP--EFCAB5^PDE4DIP^ENSG00000178104.19" ; gene_name PDE4DIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000013846.16" ; havana_transcript "OTTHUMT00000038861.3" ; hgnc_id "HGNC:15580" ; level 2 ; orig_coord_info "chr1,148952781,148953905,+" ; protein_id "ENSP00000316434.9" ; tag basic CCDS ; transcript_id "PDE4DIP--EFCAB5^ENST00000313431.13" ; transcript_name "PDE4DIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDE4DIP--EFCAB5 HAVANA mRNA 20335 45102 . + . FI_gene_label "PDE4DIP^ENSG00000178104.19" ; ID "PDE4DIP--EFCAB5^ENST00000313431.13" ; Parent "PDE4DIP--EFCAB5^PDE4DIP^ENSG00000178104.19" ; ccdsid "CCDS72894.1" ; exon_id "ENSE00001212743.8" ; exon_number 1 ; gene_id "PDE4DIP--EFCAB5^PDE4DIP^ENSG00000178104.19" ; gene_name PDE4DIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000013846.16" ; havana_transcript "OTTHUMT00000038861.3" ; hgnc_id "HGNC:15580" ; level 2 ; orig_coord_info "chr1,148952781,148953905,+" ; protein_id "ENSP00000316434.9" ; tag basic CCDS ; transcript_id "PDE4DIP--EFCAB5^ENST00000313431.13" ; transcript_name "PDE4DIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDE4DIP--EFCAB5 HAVANA gene 79223 109048 . + . FI_gene_label "EFCAB5^ENSG00000176927.15" ; ID "PDE4DIP--EFCAB5^EFCAB5^ENSG00000176927.15" ; ccdsid "CCDS11254.2" ; exon_id "ENSE00001731150.1" ; exon_number 1 ; gene_id "PDE4DIP--EFCAB5^EFCAB5^ENSG00000176927.15" ; gene_name EFCAB5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179743.3" ; havana_transcript "OTTHUMT00000256120.4" ; hgnc_id "HGNC:24801" ; level 2 ; orig_coord_info "chr17,29941797,29941838,+" ; protein_id "ENSP00000378312.3" ; tag basic appris_principal_1 CCDS ; transcript_id "PDE4DIP--EFCAB5^ENST00000394835.7" ; transcript_name "EFCAB5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDE4DIP--EFCAB5 HAVANA mRNA 79223 109048 . + . FI_gene_label "EFCAB5^ENSG00000176927.15" ; ID "PDE4DIP--EFCAB5^ENST00000394835.7" ; Parent "PDE4DIP--EFCAB5^EFCAB5^ENSG00000176927.15" ; ccdsid "CCDS11254.2" ; exon_id "ENSE00001731150.1" ; exon_number 1 ; gene_id "PDE4DIP--EFCAB5^EFCAB5^ENSG00000176927.15" ; gene_name EFCAB5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179743.3" ; havana_transcript "OTTHUMT00000256120.4" ; hgnc_id "HGNC:24801" ; level 2 ; orig_coord_info "chr17,29941797,29941838,+" ; protein_id "ENSP00000378312.3" ; tag basic appris_principal_1 CCDS ; transcript_id "PDE4DIP--EFCAB5^ENST00000394835.7" ; transcript_name "EFCAB5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PHF21A--GLIS2 HAVANA gene 35397 45721 . + . FI_gene_label "GLIS2^ENSG00000126603.9" ; ID "PHF21A--GLIS2^GLIS2^ENSG00000126603.9" ; ccdsid "CCDS10511.1" ; exon_id "ENSE00000667397.4" ; exon_number 3 ; gene_id "PHF21A--GLIS2^GLIS2^ENSG00000126603.9" ; gene_name GLIS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129467.1" ; havana_transcript "OTTHUMT00000251630.1" ; hgnc_id "HGNC:29450" ; level 2 ; orig_coord_info "chr16,4332281,4332452,+" ; protein_id "ENSP00000262366.3" ; tag basic appris_principal_1 CCDS ; transcript_id "PHF21A--GLIS2^ENST00000262366.7" ; transcript_name "GLIS2-201" ; transcript_support_level 2 ; transcript_type protein_coding
PHF21A--GLIS2 HAVANA mRNA 35397 45721 . + . FI_gene_label "GLIS2^ENSG00000126603.9" ; ID "PHF21A--GLIS2^ENST00000262366.7" ; Parent "PHF21A--GLIS2^GLIS2^ENSG00000126603.9" ; ccdsid "CCDS10511.1" ; exon_id "ENSE00000667397.4" ; exon_number 3 ; gene_id "PHF21A--GLIS2^GLIS2^ENSG00000126603.9" ; gene_name GLIS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129467.1" ; havana_transcript "OTTHUMT00000251630.1" ; hgnc_id "HGNC:29450" ; level 2 ; orig_coord_info "chr16,4332281,4332452,+" ; protein_id "ENSP00000262366.3" ; tag basic appris_principal_1 CCDS ; transcript_id "PHF21A--GLIS2^ENST00000262366.7" ; transcript_name "GLIS2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PHF21A--GLIS2 HAVANA gene 1277 29149 . + . FI_gene_label "PHF21A^ENSG00000135365.16" ; ID "PHF21A--GLIS2^PHF21A^ENSG00000135365.16" ; ccdsid "CCDS31474.1" ; exon_id "ENSE00003655755.1" ; exon_number 3 ; gene_id "PHF21A--GLIS2^PHF21A^ENSG00000135365.16" ; gene_name PHF21A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167038.2" ; havana_transcript "OTTHUMT00000392581.1" ; hgnc_id "HGNC:24156" ; level 2 ; orig_coord_info "chr11,46084166,46084219,-" ; protein_id "ENSP00000323152.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "PHF21A--GLIS2^ENST00000323180.10" ; transcript_name "PHF21A-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHF21A--GLIS2 HAVANA mRNA 1277 29149 . + . FI_gene_label "PHF21A^ENSG00000135365.16" ; ID "PHF21A--GLIS2^ENST00000323180.10" ; Parent "PHF21A--GLIS2^PHF21A^ENSG00000135365.16" ; ccdsid "CCDS31474.1" ; exon_id "ENSE00003655755.1" ; exon_number 3 ; gene_id "PHF21A--GLIS2^PHF21A^ENSG00000135365.16" ; gene_name PHF21A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167038.2" ; havana_transcript "OTTHUMT00000392581.1" ; hgnc_id "HGNC:24156" ; level 2 ; orig_coord_info "chr11,46084166,46084219,-" ; protein_id "ENSP00000323152.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "PHF21A--GLIS2^ENST00000323180.10" ; transcript_name "PHF21A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLD1--FNDC3B ENSEMBL gene 2027 5932 . + . FI_gene_label "PLD1^ENSG00000075651.16" ; ID "PLD1--FNDC3B^PLD1^ENSG00000075651.16" ; exon_id "ENSE00001313307.4" ; exon_number 2 ; gene_id "PLD1--FNDC3B^PLD1^ENSG00000075651.16" ; gene_name PLD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156947.8" ; hgnc_id "HGNC:9067" ; level 3 ; orig_coord_info "chr3,171792353,171792808,-" ; protein_id "ENSP00000328422.2" ; tag basic ; transcript_id "PLD1--FNDC3B^ENST00000331659.2" ; transcript_name "PLD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLD1--FNDC3B ENSEMBL mRNA 2027 5932 . + . FI_gene_label "PLD1^ENSG00000075651.16" ; ID "PLD1--FNDC3B^ENST00000331659.2" ; Parent "PLD1--FNDC3B^PLD1^ENSG00000075651.16" ; exon_id "ENSE00001313307.4" ; exon_number 2 ; gene_id "PLD1--FNDC3B^PLD1^ENSG00000075651.16" ; gene_name PLD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156947.8" ; hgnc_id "HGNC:9067" ; level 3 ; orig_coord_info "chr3,171792353,171792808,-" ; protein_id "ENSP00000328422.2" ; tag basic ; transcript_id "PLD1--FNDC3B^ENST00000331659.2" ; transcript_name "PLD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLD1--FNDC3B HAVANA gene 50124 91989 . + . FI_gene_label "FNDC3B^ENSG00000075420.13" ; ID "PLD1--FNDC3B^FNDC3B^ENSG00000075420.13" ; ccdsid "CCDS3217.1" ; exon_id "ENSE00003656770.1" ; exon_number 2 ; gene_id "PLD1--FNDC3B^FNDC3B^ENSG00000075420.13" ; gene_name FNDC3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000156761.6" ; havana_transcript "OTTHUMT00000345618.2" ; hgnc_id "HGNC:24670" ; level 2 ; orig_coord_info "chr3,172112480,172112590,+" ; protein_id "ENSP00000338523.4" ; tag basic appris_principal_1 CCDS ; transcript_id "PLD1--FNDC3B^ENST00000336824.8" ; transcript_name "FNDC3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLD1--FNDC3B HAVANA mRNA 50124 91989 . + . FI_gene_label "FNDC3B^ENSG00000075420.13" ; ID "PLD1--FNDC3B^ENST00000336824.8" ; Parent "PLD1--FNDC3B^FNDC3B^ENSG00000075420.13" ; ccdsid "CCDS3217.1" ; exon_id "ENSE00003656770.1" ; exon_number 2 ; gene_id "PLD1--FNDC3B^FNDC3B^ENSG00000075420.13" ; gene_name FNDC3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000156761.6" ; havana_transcript "OTTHUMT00000345618.2" ; hgnc_id "HGNC:24670" ; level 2 ; orig_coord_info "chr3,172112480,172112590,+" ; protein_id "ENSP00000338523.4" ; tag basic appris_principal_1 CCDS ; transcript_id "PLD1--FNDC3B^ENST00000336824.8" ; transcript_name "FNDC3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PSMD3--LINC01138 HAVANA gene 1001 12190 . + . FI_gene_label "PSMD3^ENSG00000108344.15" ; ID "PSMD3--LINC01138^PSMD3^ENSG00000108344.15" ; ccdsid "CCDS11356.1" ; exon_id "ENSE00001410218.3" ; exon_number 1 ; gene_id "PSMD3--LINC01138^PSMD3^ENSG00000108344.15" ; gene_name PSMD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133251.3" ; havana_transcript "OTTHUMT00000257018.2" ; hgnc_id "HGNC:9560" ; level 2 ; orig_coord_info "chr17,39980971,39981190,+" ; protein_id "ENSP00000264639.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PSMD3--LINC01138^ENST00000264639.9" ; transcript_name "PSMD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PSMD3--LINC01138 HAVANA mRNA 1001 12190 . + . FI_gene_label "PSMD3^ENSG00000108344.15" ; ID "PSMD3--LINC01138^ENST00000264639.9" ; Parent "PSMD3--LINC01138^PSMD3^ENSG00000108344.15" ; ccdsid "CCDS11356.1" ; exon_id "ENSE00001410218.3" ; exon_number 1 ; gene_id "PSMD3--LINC01138^PSMD3^ENSG00000108344.15" ; gene_name PSMD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133251.3" ; havana_transcript "OTTHUMT00000257018.2" ; hgnc_id "HGNC:9560" ; level 2 ; orig_coord_info "chr17,39980971,39981190,+" ; protein_id "ENSP00000264639.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PSMD3--LINC01138^ENST00000264639.9" ; transcript_name "PSMD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PWRN1--UBE3A HAVANA gene 117692 147147 . + . FI_gene_label "UBE3A^ENSG00000114062.22" ; ID "PWRN1--UBE3A^UBE3A^ENSG00000114062.22" ; ccdsid "CCDS32177.1" ; exon_id "ENSE00003478252.1" ; exon_number 6 ; gene_id "PWRN1--UBE3A^UBE3A^ENSG00000114062.22" ; gene_name UBE3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000171548.13" ; havana_transcript "OTTHUMT00000434204.2" ; hgnc_id "HGNC:12496" ; level 2 ; orig_coord_info "chr15,25405461,25405462,-" ; protein_id "ENSP00000401265.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "PWRN1--UBE3A^ENST00000428984.6" ; transcript_name "UBE3A-201" ; transcript_support_level 5 ; transcript_type protein_coding
PWRN1--UBE3A HAVANA mRNA 117692 147147 . + . FI_gene_label "UBE3A^ENSG00000114062.22" ; ID "PWRN1--UBE3A^ENST00000428984.6" ; Parent "PWRN1--UBE3A^UBE3A^ENSG00000114062.22" ; ccdsid "CCDS32177.1" ; exon_id "ENSE00003478252.1" ; exon_number 6 ; gene_id "PWRN1--UBE3A^UBE3A^ENSG00000114062.22" ; gene_name UBE3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000171548.13" ; havana_transcript "OTTHUMT00000434204.2" ; hgnc_id "HGNC:12496" ; level 2 ; orig_coord_info "chr15,25405461,25405462,-" ; protein_id "ENSP00000401265.2" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "PWRN1--UBE3A^ENST00000428984.6" ; transcript_name "UBE3A-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RAD18--SLC39A11 HAVANA gene 24086 47993 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "RAD18--SLC39A11^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "RAD18--SLC39A11^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "RAD18--SLC39A11^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAD18--SLC39A11 HAVANA mRNA 24086 47993 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "RAD18--SLC39A11^ENST00000255559.7" ; Parent "RAD18--SLC39A11^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "RAD18--SLC39A11^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "RAD18--SLC39A11^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RAD18--SLC39A11 HAVANA gene 1302 19803 . + . FI_gene_label "RAD18^ENSG00000070950.10" ; ID "RAD18--SLC39A11^RAD18^ENSG00000070950.10" ; ccdsid "CCDS2571.1" ; exon_id "ENSE00003462847.2" ; exon_number 1 ; gene_id "RAD18--SLC39A11^RAD18^ENSG00000070950.10" ; gene_name RAD18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090545.6" ; havana_transcript "OTTHUMT00000207071.3" ; hgnc_id "HGNC:18278" ; level 2 ; orig_coord_info "chr3,8963335,8963385,-" ; protein_id "ENSP00000264926.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAD18--SLC39A11^ENST00000264926.7" ; transcript_name "RAD18-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAD18--SLC39A11 HAVANA mRNA 1302 19803 . + . FI_gene_label "RAD18^ENSG00000070950.10" ; ID "RAD18--SLC39A11^ENST00000264926.7" ; Parent "RAD18--SLC39A11^RAD18^ENSG00000070950.10" ; ccdsid "CCDS2571.1" ; exon_id "ENSE00003462847.2" ; exon_number 1 ; gene_id "RAD18--SLC39A11^RAD18^ENSG00000070950.10" ; gene_name RAD18 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090545.6" ; havana_transcript "OTTHUMT00000207071.3" ; hgnc_id "HGNC:18278" ; level 2 ; orig_coord_info "chr3,8963335,8963385,-" ; protein_id "ENSP00000264926.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAD18--SLC39A11^ENST00000264926.7" ; transcript_name "RAD18-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM47--UGDH-AS1 HAVANA gene 2012 19675 . + . FI_gene_label "RBM47^ENSG00000163694.15" ; ID "RBM47--UGDH-AS1^RBM47^ENSG00000163694.15" ; ccdsid "CCDS43223.1" ; exon_id "ENSE00001077384.4" ; exon_number 4 ; gene_id "RBM47--UGDH-AS1^RBM47^ENSG00000163694.15" ; gene_name RBM47 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128598.5" ; havana_transcript "OTTHUMT00000362029.2" ; hgnc_id "HGNC:30358" ; level 2 ; orig_coord_info "chr4,40437771,40438893,-" ; protein_id "ENSP00000295971.7" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "RBM47--UGDH-AS1^ENST00000295971.12" ; transcript_name "RBM47-201" ; transcript_support_level 5 ; transcript_type protein_coding
RBM47--UGDH-AS1 HAVANA mRNA 2012 19675 . + . FI_gene_label "RBM47^ENSG00000163694.15" ; ID "RBM47--UGDH-AS1^ENST00000295971.12" ; Parent "RBM47--UGDH-AS1^RBM47^ENSG00000163694.15" ; ccdsid "CCDS43223.1" ; exon_id "ENSE00001077384.4" ; exon_number 4 ; gene_id "RBM47--UGDH-AS1^RBM47^ENSG00000163694.15" ; gene_name RBM47 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128598.5" ; havana_transcript "OTTHUMT00000362029.2" ; hgnc_id "HGNC:30358" ; level 2 ; orig_coord_info "chr4,40437771,40438893,-" ; protein_id "ENSP00000295971.7" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "RBM47--UGDH-AS1^ENST00000295971.12" ; transcript_name "RBM47-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RBM47--UGDH HAVANA gene 2012 19675 . + . FI_gene_label "RBM47^ENSG00000163694.15" ; ID "RBM47--UGDH^RBM47^ENSG00000163694.15" ; ccdsid "CCDS43223.1" ; exon_id "ENSE00001077384.4" ; exon_number 4 ; gene_id "RBM47--UGDH^RBM47^ENSG00000163694.15" ; gene_name RBM47 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128598.5" ; havana_transcript "OTTHUMT00000362029.2" ; hgnc_id "HGNC:30358" ; level 2 ; orig_coord_info "chr4,40437771,40438893,-" ; protein_id "ENSP00000295971.7" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "RBM47--UGDH^ENST00000295971.12" ; transcript_name "RBM47-201" ; transcript_support_level 5 ; transcript_type protein_coding
RBM47--UGDH HAVANA mRNA 2012 19675 . + . FI_gene_label "RBM47^ENSG00000163694.15" ; ID "RBM47--UGDH^ENST00000295971.12" ; Parent "RBM47--UGDH^RBM47^ENSG00000163694.15" ; ccdsid "CCDS43223.1" ; exon_id "ENSE00001077384.4" ; exon_number 4 ; gene_id "RBM47--UGDH^RBM47^ENSG00000163694.15" ; gene_name RBM47 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128598.5" ; havana_transcript "OTTHUMT00000362029.2" ; hgnc_id "HGNC:30358" ; level 2 ; orig_coord_info "chr4,40437771,40438893,-" ; protein_id "ENSP00000295971.7" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "RBM47--UGDH^ENST00000295971.12" ; transcript_name "RBM47-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RBM47--UGDH HAVANA gene 23561 35482 . + . FI_gene_label "UGDH^ENSG00000109814.12" ; ID "RBM47--UGDH^UGDH^ENSG00000109814.12" ; ccdsid "CCDS3455.1" ; exon_id "ENSE00003477877.1" ; exon_number 2 ; gene_id "RBM47--UGDH^UGDH^ENSG00000109814.12" ; gene_name UGDH ; gene_type protein_coding ; havana_gene "OTTHUMG00000099371.6" ; havana_transcript "OTTHUMT00000216818.4" ; hgnc_id "HGNC:12525" ; level 2 ; orig_coord_info "chr4,39521351,39521512,-" ; protein_id "ENSP00000319501.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM47--UGDH^ENST00000316423.11" ; transcript_name "UGDH-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM47--UGDH HAVANA mRNA 23561 35482 . + . FI_gene_label "UGDH^ENSG00000109814.12" ; ID "RBM47--UGDH^ENST00000316423.11" ; Parent "RBM47--UGDH^UGDH^ENSG00000109814.12" ; ccdsid "CCDS3455.1" ; exon_id "ENSE00003477877.1" ; exon_number 2 ; gene_id "RBM47--UGDH^UGDH^ENSG00000109814.12" ; gene_name UGDH ; gene_type protein_coding ; havana_gene "OTTHUMG00000099371.6" ; havana_transcript "OTTHUMT00000216818.4" ; hgnc_id "HGNC:12525" ; level 2 ; orig_coord_info "chr4,39521351,39521512,-" ; protein_id "ENSP00000319501.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM47--UGDH^ENST00000316423.11" ; transcript_name "UGDH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF216--RALA HAVANA gene 34267 43446 . + . FI_gene_label "RALA^ENSG00000006451.8" ; ID "RNF216--RALA^RALA^ENSG00000006451.8" ; ccdsid "CCDS5460.1" ; exon_id "ENSE00000832451.2" ; exon_number 2 ; gene_id "RNF216--RALA^RALA^ENSG00000006451.8" ; gene_name RALA ; gene_type protein_coding ; havana_gene "OTTHUMG00000128775.5" ; havana_transcript "OTTHUMT00000250696.3" ; hgnc_id "HGNC:9839" ; level 2 ; orig_coord_info "chr7,39686668,39686781,+" ; protein_id "ENSP00000005257.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF216--RALA^ENST00000005257.7" ; transcript_name "RALA-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF216--RALA HAVANA mRNA 34267 43446 . + . FI_gene_label "RALA^ENSG00000006451.8" ; ID "RNF216--RALA^ENST00000005257.7" ; Parent "RNF216--RALA^RALA^ENSG00000006451.8" ; ccdsid "CCDS5460.1" ; exon_id "ENSE00000832451.2" ; exon_number 2 ; gene_id "RNF216--RALA^RALA^ENSG00000006451.8" ; gene_name RALA ; gene_type protein_coding ; havana_gene "OTTHUMG00000128775.5" ; havana_transcript "OTTHUMT00000250696.3" ; hgnc_id "HGNC:9839" ; level 2 ; orig_coord_info "chr7,39686668,39686781,+" ; protein_id "ENSP00000005257.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF216--RALA^ENST00000005257.7" ; transcript_name "RALA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF216--RALA HAVANA gene 6827 28611 . + . FI_gene_label "RNF216^ENSG00000011275.19" ; ID "RNF216--RALA^RNF216^ENSG00000011275.19" ; exon_id "ENSE00001422787.1" ; exon_number 1 ; gene_id "RNF216--RALA^RNF216^ENSG00000011275.19" ; gene_name RNF216 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155500.4" ; havana_transcript "OTTHUMT00000340377.1" ; hgnc_id "HGNC:21698" ; level 2 ; orig_coord_info "chr7,5761003,5761069,-" ; protein_id "ENSP00000374550.4" ; transcript_id "RNF216--RALA^ENST00000389900.8" ; transcript_name "RNF216-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
RNF216--RALA HAVANA mRNA 6827 28611 . + . FI_gene_label "RNF216^ENSG00000011275.19" ; ID "RNF216--RALA^ENST00000389900.8" ; Parent "RNF216--RALA^RNF216^ENSG00000011275.19" ; exon_id "ENSE00001422787.1" ; exon_number 1 ; gene_id "RNF216--RALA^RNF216^ENSG00000011275.19" ; gene_name RNF216 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155500.4" ; havana_transcript "OTTHUMT00000340377.1" ; hgnc_id "HGNC:21698" ; level 2 ; orig_coord_info "chr7,5761003,5761069,-" ; protein_id "ENSP00000374550.4" ; transcript_id "RNF216--RALA^ENST00000389900.8" ; transcript_name "RNF216-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
RNGTT--MAP3K7 HAVANA gene 30197 42776 . + . FI_gene_label "MAP3K7^ENSG00000135341.18" ; ID "RNGTT--MAP3K7^MAP3K7^ENSG00000135341.18" ; exon_id "ENSE00003489617.1" ; exon_number 3 ; gene_id "RNGTT--MAP3K7^MAP3K7^ENSG00000135341.18" ; gene_name MAP3K7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015217.2" ; havana_transcript "OTTHUMT00000041534.1" ; hgnc_id "HGNC:6859" ; level 2 ; orig_coord_info "chr6,90548047,90548169,-" ; protein_id "ENSP00000358326.1" ; tag basic ; transcript_id "RNGTT--MAP3K7^ENST00000369320.1" ; transcript_name "MAP3K7-201" ; transcript_support_level 5 ; transcript_type protein_coding
RNGTT--MAP3K7 HAVANA mRNA 30197 42776 . + . FI_gene_label "MAP3K7^ENSG00000135341.18" ; ID "RNGTT--MAP3K7^ENST00000369320.1" ; Parent "RNGTT--MAP3K7^MAP3K7^ENSG00000135341.18" ; exon_id "ENSE00003489617.1" ; exon_number 3 ; gene_id "RNGTT--MAP3K7^MAP3K7^ENSG00000135341.18" ; gene_name MAP3K7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015217.2" ; havana_transcript "OTTHUMT00000041534.1" ; hgnc_id "HGNC:6859" ; level 2 ; orig_coord_info "chr6,90548047,90548169,-" ; protein_id "ENSP00000358326.1" ; tag basic ; transcript_id "RNGTT--MAP3K7^ENST00000369320.1" ; transcript_name "MAP3K7-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RNGTT--MAP3K7 HAVANA gene 1210 17456 . + . FI_gene_label "RNGTT^ENSG00000111880.16" ; ID "RNGTT--MAP3K7^RNGTT^ENSG00000111880.16" ; ccdsid "CCDS69153.1" ; exon_id "ENSE00002223802.2" ; exon_number 1 ; gene_id "RNGTT--MAP3K7^RNGTT^ENSG00000111880.16" ; gene_name RNGTT ; gene_type protein_coding ; havana_gene "OTTHUMG00000015190.5" ; havana_transcript "OTTHUMT00000484165.2" ; hgnc_id "HGNC:10073" ; level 2 ; orig_coord_info "chr6,88963346,88963409,-" ; protein_id "ENSP00000358487.4" ; tag basic CCDS ; transcript_id "RNGTT--MAP3K7^ENST00000369475.7" ; transcript_name "RNGTT-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNGTT--MAP3K7 HAVANA mRNA 1210 17456 . + . FI_gene_label "RNGTT^ENSG00000111880.16" ; ID "RNGTT--MAP3K7^ENST00000369475.7" ; Parent "RNGTT--MAP3K7^RNGTT^ENSG00000111880.16" ; ccdsid "CCDS69153.1" ; exon_id "ENSE00002223802.2" ; exon_number 1 ; gene_id "RNGTT--MAP3K7^RNGTT^ENSG00000111880.16" ; gene_name RNGTT ; gene_type protein_coding ; havana_gene "OTTHUMG00000015190.5" ; havana_transcript "OTTHUMT00000484165.2" ; hgnc_id "HGNC:10073" ; level 2 ; orig_coord_info "chr6,88963346,88963409,-" ; protein_id "ENSP00000358487.4" ; tag basic CCDS ; transcript_id "RNGTT--MAP3K7^ENST00000369475.7" ; transcript_name "RNGTT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RPF2--HOXB-AS3 HAVANA gene 1001 10247 . + . FI_gene_label "RPF2^ENSG00000197498.13" ; ID "RPF2--HOXB-AS3^RPF2^ENSG00000197498.13" ; exon_id "ENSE00003695590.1" ; exon_number 1 ; gene_id "RPF2--HOXB-AS3^RPF2^ENSG00000197498.13" ; gene_name RPF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015368.3" ; havana_transcript "OTTHUMT00000041814.2" ; hgnc_id "HGNC:20870" ; level 2 ; orig_coord_info "chr6,110982107,110982129,+" ; protein_id "ENSP00000357857.5" ; transcript_id "RPF2--HOXB-AS3^ENST00000368864.8" ; transcript_name "RPF2-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
RPF2--HOXB-AS3 HAVANA mRNA 1001 10247 . + . FI_gene_label "RPF2^ENSG00000197498.13" ; ID "RPF2--HOXB-AS3^ENST00000368864.8" ; Parent "RPF2--HOXB-AS3^RPF2^ENSG00000197498.13" ; exon_id "ENSE00003695590.1" ; exon_number 1 ; gene_id "RPF2--HOXB-AS3^RPF2^ENSG00000197498.13" ; gene_name RPF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015368.3" ; havana_transcript "OTTHUMT00000041814.2" ; hgnc_id "HGNC:20870" ; level 2 ; orig_coord_info "chr6,110982107,110982129,+" ; protein_id "ENSP00000357857.5" ; transcript_id "RPF2--HOXB-AS3^ENST00000368864.8" ; transcript_name "RPF2-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
RRAS2--AC020637.1 HAVANA gene 2117 14818 . + . FI_gene_label "RRAS2^ENSG00000133818.14" ; ID "RRAS2--AC020637.1^RRAS2^ENSG00000133818.14" ; ccdsid "CCDS7814.1" ; exon_id "ENSE00001302370.5" ; exon_number 1 ; gene_id "RRAS2--AC020637.1^RRAS2^ENSG00000133818.14" ; gene_name RRAS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165756.3" ; havana_transcript "OTTHUMT00000386035.2" ; hgnc_id "HGNC:17271" ; level 2 ; orig_coord_info "chr11,14358763,14358870,-" ; protein_id "ENSP00000256196.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRAS2--AC020637.1^ENST00000256196.9" ; transcript_name "RRAS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RRAS2--AC020637.1 HAVANA mRNA 2117 14818 . + . FI_gene_label "RRAS2^ENSG00000133818.14" ; ID "RRAS2--AC020637.1^ENST00000256196.9" ; Parent "RRAS2--AC020637.1^RRAS2^ENSG00000133818.14" ; ccdsid "CCDS7814.1" ; exon_id "ENSE00001302370.5" ; exon_number 1 ; gene_id "RRAS2--AC020637.1^RRAS2^ENSG00000133818.14" ; gene_name RRAS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165756.3" ; havana_transcript "OTTHUMT00000386035.2" ; hgnc_id "HGNC:17271" ; level 2 ; orig_coord_info "chr11,14358763,14358870,-" ; protein_id "ENSP00000256196.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRAS2--AC020637.1^ENST00000256196.9" ; transcript_name "RRAS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SEMA3E--DCC HAVANA gene 34688 70235 . + . FI_gene_label "DCC^ENSG00000187323.12" ; ID "SEMA3E--DCC^DCC^ENSG00000187323.12" ; exon_id "ENSE00002686001.1" ; exon_number 1 ; gene_id "SEMA3E--DCC^DCC^ENSG00000187323.12" ; gene_name DCC ; gene_type protein_coding ; havana_gene "OTTHUMG00000132698.7" ; havana_transcript "OTTHUMT00000447769.1" ; hgnc_id "HGNC:2701" ; level 2 ; orig_coord_info "chr18,52752162,52752374,+" ; protein_id "ENSP00000304146.8" ; tag mRNA_start_NF cds_start_NF ; transcript_id "SEMA3E--DCC^ENST00000304775.12" ; transcript_name "DCC-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
SEMA3E--DCC HAVANA mRNA 34688 70235 . + . FI_gene_label "DCC^ENSG00000187323.12" ; ID "SEMA3E--DCC^ENST00000304775.12" ; Parent "SEMA3E--DCC^DCC^ENSG00000187323.12" ; exon_id "ENSE00002686001.1" ; exon_number 1 ; gene_id "SEMA3E--DCC^DCC^ENSG00000187323.12" ; gene_name DCC ; gene_type protein_coding ; havana_gene "OTTHUMG00000132698.7" ; havana_transcript "OTTHUMT00000447769.1" ; hgnc_id "HGNC:2701" ; level 2 ; orig_coord_info "chr18,52752162,52752374,+" ; protein_id "ENSP00000304146.8" ; tag mRNA_start_NF cds_start_NF ; transcript_id "SEMA3E--DCC^ENST00000304775.12" ; transcript_name "DCC-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
SEMA3E--DCC ENSEMBL gene 2713 29207 . + . FI_gene_label "SEMA3E^ENSG00000170381.14" ; ID "SEMA3E--DCC^SEMA3E^ENSG00000170381.14" ; ccdsid "CCDS55121.1" ; exon_id "ENSE00003829425.1" ; exon_number 2 ; gene_id "SEMA3E--DCC^SEMA3E^ENSG00000170381.14" ; gene_name SEMA3E ; gene_type protein_coding ; havana_gene "OTTHUMG00000154693.7" ; hgnc_id "HGNC:10727" ; level 3 ; orig_coord_info "chr7,83490114,83490209,-" ; protein_id "ENSP00000405052.1" ; tag basic CCDS ; transcript_id "SEMA3E--DCC^ENST00000427262.6" ; transcript_name "SEMA3E-201" ; transcript_support_level 2 ; transcript_type protein_coding
SEMA3E--DCC ENSEMBL mRNA 2713 29207 . + . FI_gene_label "SEMA3E^ENSG00000170381.14" ; ID "SEMA3E--DCC^ENST00000427262.6" ; Parent "SEMA3E--DCC^SEMA3E^ENSG00000170381.14" ; ccdsid "CCDS55121.1" ; exon_id "ENSE00003829425.1" ; exon_number 2 ; gene_id "SEMA3E--DCC^SEMA3E^ENSG00000170381.14" ; gene_name SEMA3E ; gene_type protein_coding ; havana_gene "OTTHUMG00000154693.7" ; hgnc_id "HGNC:10727" ; level 3 ; orig_coord_info "chr7,83490114,83490209,-" ; protein_id "ENSP00000405052.1" ; tag basic CCDS ; transcript_id "SEMA3E--DCC^ENST00000427262.6" ; transcript_name "SEMA3E-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SLC39A11--AC023796.1 HAVANA gene 1020 24927 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "SLC39A11--AC023796.1^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "SLC39A11--AC023796.1^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SLC39A11--AC023796.1^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC39A11--AC023796.1 HAVANA mRNA 1020 24927 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "SLC39A11--AC023796.1^ENST00000255559.7" ; Parent "SLC39A11--AC023796.1^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "SLC39A11--AC023796.1^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SLC39A11--AC023796.1^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC39A11--BCAT1 HAVANA gene 1020 24927 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "SLC39A11--BCAT1^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "SLC39A11--BCAT1^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SLC39A11--BCAT1^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC39A11--BCAT1 HAVANA mRNA 1020 24927 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "SLC39A11--BCAT1^ENST00000255559.7" ; Parent "SLC39A11--BCAT1^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "SLC39A11--BCAT1^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SLC39A11--BCAT1^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC39A11--BCAT1 HAVANA gene 27928 52256 . + . FI_gene_label "BCAT1^ENSG00000060982.15" ; ID "SLC39A11--BCAT1^BCAT1^ENSG00000060982.15" ; ccdsid "CCDS44845.1" ; exon_id "ENSE00001535251.4" ; exon_number 1 ; gene_id "SLC39A11--BCAT1^BCAT1^ENSG00000060982.15" ; gene_name BCAT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169053.5" ; havana_transcript "OTTHUMT00000402080.3" ; hgnc_id "HGNC:976" ; level 2 ; orig_coord_info "chr12,24948927,24948932,-" ; protein_id "ENSP00000261192.7" ; tag upstream_uORF basic MANE_Select appris_principal_4 CCDS ; transcript_id "SLC39A11--BCAT1^ENST00000261192.12" ; transcript_name "BCAT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC39A11--BCAT1 HAVANA mRNA 27928 52256 . + . FI_gene_label "BCAT1^ENSG00000060982.15" ; ID "SLC39A11--BCAT1^ENST00000261192.12" ; Parent "SLC39A11--BCAT1^BCAT1^ENSG00000060982.15" ; ccdsid "CCDS44845.1" ; exon_id "ENSE00001535251.4" ; exon_number 1 ; gene_id "SLC39A11--BCAT1^BCAT1^ENSG00000060982.15" ; gene_name BCAT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169053.5" ; havana_transcript "OTTHUMT00000402080.3" ; hgnc_id "HGNC:976" ; level 2 ; orig_coord_info "chr12,24948927,24948932,-" ; protein_id "ENSP00000261192.7" ; tag upstream_uORF basic MANE_Select appris_principal_4 CCDS ; transcript_id "SLC39A11--BCAT1^ENST00000261192.12" ; transcript_name "BCAT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC39A11--PDE4DIP HAVANA gene 1020 24927 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "SLC39A11--PDE4DIP^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "SLC39A11--PDE4DIP^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SLC39A11--PDE4DIP^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC39A11--PDE4DIP HAVANA mRNA 1020 24927 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "SLC39A11--PDE4DIP^ENST00000255559.7" ; Parent "SLC39A11--PDE4DIP^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "SLC39A11--PDE4DIP^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SLC39A11--PDE4DIP^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC39A11--PDE4DIP HAVANA gene 47262 72029 . + . FI_gene_label "PDE4DIP^ENSG00000178104.19" ; ID "SLC39A11--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; ccdsid "CCDS72894.1" ; exon_id "ENSE00001212743.8" ; exon_number 1 ; gene_id "SLC39A11--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; gene_name PDE4DIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000013846.16" ; havana_transcript "OTTHUMT00000038861.3" ; hgnc_id "HGNC:15580" ; level 2 ; orig_coord_info "chr1,148952781,148953905,+" ; protein_id "ENSP00000316434.9" ; tag basic CCDS ; transcript_id "SLC39A11--PDE4DIP^ENST00000313431.13" ; transcript_name "PDE4DIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC39A11--PDE4DIP HAVANA mRNA 47262 72029 . + . FI_gene_label "PDE4DIP^ENSG00000178104.19" ; ID "SLC39A11--PDE4DIP^ENST00000313431.13" ; Parent "SLC39A11--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; ccdsid "CCDS72894.1" ; exon_id "ENSE00001212743.8" ; exon_number 1 ; gene_id "SLC39A11--PDE4DIP^PDE4DIP^ENSG00000178104.19" ; gene_name PDE4DIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000013846.16" ; havana_transcript "OTTHUMT00000038861.3" ; hgnc_id "HGNC:15580" ; level 2 ; orig_coord_info "chr1,148952781,148953905,+" ; protein_id "ENSP00000316434.9" ; tag basic CCDS ; transcript_id "SLC39A11--PDE4DIP^ENST00000313431.13" ; transcript_name "PDE4DIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC39A11--TTLL3 HAVANA gene 1020 24927 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "SLC39A11--TTLL3^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "SLC39A11--TTLL3^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SLC39A11--TTLL3^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC39A11--TTLL3 HAVANA mRNA 1020 24927 . + . FI_gene_label "SLC39A11^ENSG00000133195.11" ; ID "SLC39A11--TTLL3^ENST00000255559.7" ; Parent "SLC39A11--TTLL3^SLC39A11^ENSG00000133195.11" ; ccdsid "CCDS11690.1" ; exon_id "ENSE00003519818.1" ; exon_number 2 ; gene_id "SLC39A11--TTLL3^SLC39A11^ENSG00000133195.11" ; gene_name SLC39A11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178306.5" ; havana_transcript "OTTHUMT00000441441.1" ; hgnc_id "HGNC:14463" ; level 2 ; orig_coord_info "chr17,73088657,73088764,-" ; protein_id "ENSP00000255559.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SLC39A11--TTLL3^ENST00000255559.7" ; transcript_name "SLC39A11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC39A11--TTLL3 HAVANA gene 31861 45100 . + . FI_gene_label "TTLL3^ENSG00000214021.16" ; ID "SLC39A11--TTLL3^TTLL3^ENSG00000214021.16" ; exon_id "ENSE00003582127.1" ; exon_number 1 ; gene_id "SLC39A11--TTLL3^TTLL3^ENSG00000214021.16" ; gene_name TTLL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128439.14" ; havana_transcript "OTTHUMT00000338968.2" ; hgnc_id "HGNC:24483" ; level 2 ; orig_coord_info "chr3,9813294,9813345,+" ; protein_id "ENSP00000312148.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "SLC39A11--TTLL3^ENST00000310252.11" ; transcript_name "TTLL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC39A11--TTLL3 HAVANA mRNA 31861 45100 . + . FI_gene_label "TTLL3^ENSG00000214021.16" ; ID "SLC39A11--TTLL3^ENST00000310252.11" ; Parent "SLC39A11--TTLL3^TTLL3^ENSG00000214021.16" ; exon_id "ENSE00003582127.1" ; exon_number 1 ; gene_id "SLC39A11--TTLL3^TTLL3^ENSG00000214021.16" ; gene_name TTLL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128439.14" ; havana_transcript "OTTHUMT00000338968.2" ; hgnc_id "HGNC:24483" ; level 2 ; orig_coord_info "chr3,9813294,9813345,+" ; protein_id "ENSP00000312148.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "SLC39A11--TTLL3^ENST00000310252.11" ; transcript_name "TTLL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SSH2--ANKRD13B HAVANA gene 1125 32617 . + . FI_gene_label "SSH2^ENSG00000141298.19" ; ID "SSH2--ANKRD13B^SSH2^ENSG00000141298.19" ; ccdsid "CCDS11253.1" ; exon_id "ENSE00001878927.1" ; exon_number 1 ; gene_id "SSH2--ANKRD13B^SSH2^ENSG00000141298.19" ; gene_name SSH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132752.8" ; havana_transcript "OTTHUMT00000256116.1" ; hgnc_id "HGNC:30580" ; level 2 ; orig_coord_info "chr17,29929938,29930000,-" ; protein_id "ENSP00000269033.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SSH2--ANKRD13B^ENST00000269033.7" ; transcript_name "SSH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SSH2--ANKRD13B HAVANA mRNA 1125 32617 . + . FI_gene_label "SSH2^ENSG00000141298.19" ; ID "SSH2--ANKRD13B^ENST00000269033.7" ; Parent "SSH2--ANKRD13B^SSH2^ENSG00000141298.19" ; ccdsid "CCDS11253.1" ; exon_id "ENSE00001878927.1" ; exon_number 1 ; gene_id "SSH2--ANKRD13B^SSH2^ENSG00000141298.19" ; gene_name SSH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132752.8" ; havana_transcript "OTTHUMT00000256116.1" ; hgnc_id "HGNC:30580" ; level 2 ; orig_coord_info "chr17,29929938,29930000,-" ; protein_id "ENSP00000269033.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SSH2--ANKRD13B^ENST00000269033.7" ; transcript_name "SSH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SSH2--ANKRD13B HAVANA gene 36712 46138 . + . FI_gene_label "ANKRD13B^ENSG00000198720.13" ; ID "SSH2--ANKRD13B^ANKRD13B^ENSG00000198720.13" ; ccdsid "CCDS11251.1" ; exon_id "ENSE00003848255.1" ; exon_number 1 ; gene_id "SSH2--ANKRD13B^ANKRD13B^ENSG00000198720.13" ; gene_name ANKRD13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000132731.8" ; havana_transcript "OTTHUMT00000256077.2" ; hgnc_id "HGNC:26363" ; level 2 ; orig_coord_info "chr17,29593622,29593735,+" ; protein_id "ENSP00000378328.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SSH2--ANKRD13B^ENST00000394859.8" ; transcript_name "ANKRD13B-201" ; transcript_support_level 2 ; transcript_type protein_coding
SSH2--ANKRD13B HAVANA mRNA 36712 46138 . + . FI_gene_label "ANKRD13B^ENSG00000198720.13" ; ID "SSH2--ANKRD13B^ENST00000394859.8" ; Parent "SSH2--ANKRD13B^ANKRD13B^ENSG00000198720.13" ; ccdsid "CCDS11251.1" ; exon_id "ENSE00003848255.1" ; exon_number 1 ; gene_id "SSH2--ANKRD13B^ANKRD13B^ENSG00000198720.13" ; gene_name ANKRD13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000132731.8" ; havana_transcript "OTTHUMT00000256077.2" ; hgnc_id "HGNC:26363" ; level 2 ; orig_coord_info "chr17,29593622,29593735,+" ; protein_id "ENSP00000378328.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SSH2--ANKRD13B^ENST00000394859.8" ; transcript_name "ANKRD13B-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SSH2--THUMPD3 HAVANA gene 1125 32617 . + . FI_gene_label "SSH2^ENSG00000141298.19" ; ID "SSH2--THUMPD3^SSH2^ENSG00000141298.19" ; ccdsid "CCDS11253.1" ; exon_id "ENSE00001878927.1" ; exon_number 1 ; gene_id "SSH2--THUMPD3^SSH2^ENSG00000141298.19" ; gene_name SSH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132752.8" ; havana_transcript "OTTHUMT00000256116.1" ; hgnc_id "HGNC:30580" ; level 2 ; orig_coord_info "chr17,29929938,29930000,-" ; protein_id "ENSP00000269033.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SSH2--THUMPD3^ENST00000269033.7" ; transcript_name "SSH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SSH2--THUMPD3 HAVANA mRNA 1125 32617 . + . FI_gene_label "SSH2^ENSG00000141298.19" ; ID "SSH2--THUMPD3^ENST00000269033.7" ; Parent "SSH2--THUMPD3^SSH2^ENSG00000141298.19" ; ccdsid "CCDS11253.1" ; exon_id "ENSE00001878927.1" ; exon_number 1 ; gene_id "SSH2--THUMPD3^SSH2^ENSG00000141298.19" ; gene_name SSH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132752.8" ; havana_transcript "OTTHUMT00000256116.1" ; hgnc_id "HGNC:30580" ; level 2 ; orig_coord_info "chr17,29929938,29930000,-" ; protein_id "ENSP00000269033.3" ; tag basic appris_principal_4 CCDS ; transcript_id "SSH2--THUMPD3^ENST00000269033.7" ; transcript_name "SSH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SSH2--THUMPD3 HAVANA gene 35699 48985 . + . FI_gene_label "THUMPD3^ENSG00000134077.16" ; ID "SSH2--THUMPD3^THUMPD3^ENSG00000134077.16" ; ccdsid "CCDS2573.1" ; exon_id "ENSE00001301866.4" ; exon_number 2 ; gene_id "SSH2--THUMPD3^THUMPD3^ENSG00000134077.16" ; gene_name THUMPD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097031.8" ; havana_transcript "OTTHUMT00000214127.1" ; hgnc_id "HGNC:24493" ; level 2 ; orig_coord_info "chr3,9365069,9365320,+" ; protein_id "ENSP00000339532.3" ; tag basic appris_principal_1 CCDS ; transcript_id "SSH2--THUMPD3^ENST00000345094.7" ; transcript_name "THUMPD3-201" ; transcript_support_level 2 ; transcript_type protein_coding
SSH2--THUMPD3 HAVANA mRNA 35699 48985 . + . FI_gene_label "THUMPD3^ENSG00000134077.16" ; ID "SSH2--THUMPD3^ENST00000345094.7" ; Parent "SSH2--THUMPD3^THUMPD3^ENSG00000134077.16" ; ccdsid "CCDS2573.1" ; exon_id "ENSE00001301866.4" ; exon_number 2 ; gene_id "SSH2--THUMPD3^THUMPD3^ENSG00000134077.16" ; gene_name THUMPD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097031.8" ; havana_transcript "OTTHUMT00000214127.1" ; hgnc_id "HGNC:24493" ; level 2 ; orig_coord_info "chr3,9365069,9365320,+" ; protein_id "ENSP00000339532.3" ; tag basic appris_principal_1 CCDS ; transcript_id "SSH2--THUMPD3^ENST00000345094.7" ; transcript_name "THUMPD3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
STK3--PLEKHF2 HAVANA gene 43634 47835 . + . FI_gene_label "PLEKHF2^ENSG00000175895.4" ; ID "STK3--PLEKHF2^PLEKHF2^ENSG00000175895.4" ; ccdsid "CCDS6267.1" ; exon_id "ENSE00001273901.8" ; exon_number 2 ; gene_id "STK3--PLEKHF2^PLEKHF2^ENSG00000175895.4" ; gene_name PLEKHF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164660.2" ; havana_transcript "OTTHUMT00000379666.2" ; hgnc_id "HGNC:20757" ; level 2 ; orig_coord_info "chr8,95154045,95154791,+" ; protein_id "ENSP00000322373.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STK3--PLEKHF2^ENST00000315367.4" ; transcript_name "PLEKHF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
STK3--PLEKHF2 HAVANA mRNA 43634 47835 . + . FI_gene_label "PLEKHF2^ENSG00000175895.4" ; ID "STK3--PLEKHF2^ENST00000315367.4" ; Parent "STK3--PLEKHF2^PLEKHF2^ENSG00000175895.4" ; ccdsid "CCDS6267.1" ; exon_id "ENSE00001273901.8" ; exon_number 2 ; gene_id "STK3--PLEKHF2^PLEKHF2^ENSG00000175895.4" ; gene_name PLEKHF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164660.2" ; havana_transcript "OTTHUMT00000379666.2" ; hgnc_id "HGNC:20757" ; level 2 ; orig_coord_info "chr8,95154045,95154791,+" ; protein_id "ENSP00000322373.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STK3--PLEKHF2^ENST00000315367.4" ; transcript_name "PLEKHF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STK3--PLEKHF2 HAVANA gene 10954 32531 . + . FI_gene_label "STK3^ENSG00000104375.17" ; ID "STK3--PLEKHF2^STK3^ENSG00000104375.17" ; ccdsid "CCDS47900.1" ; exon_id "ENSE00001478384.5" ; exon_number 1 ; gene_id "STK3--PLEKHF2^STK3^ENSG00000104375.17" ; gene_name STK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164651.10" ; havana_transcript "OTTHUMT00000379635.3" ; hgnc_id "HGNC:11406" ; level 2 ; orig_coord_info "chr8,98825515,98825540,-" ; protein_id "ENSP00000390500.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STK3--PLEKHF2^ENST00000419617.7" ; transcript_name "STK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
STK3--PLEKHF2 HAVANA mRNA 10954 32531 . + . FI_gene_label "STK3^ENSG00000104375.17" ; ID "STK3--PLEKHF2^ENST00000419617.7" ; Parent "STK3--PLEKHF2^STK3^ENSG00000104375.17" ; ccdsid "CCDS47900.1" ; exon_id "ENSE00001478384.5" ; exon_number 1 ; gene_id "STK3--PLEKHF2^STK3^ENSG00000104375.17" ; gene_name STK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164651.10" ; havana_transcript "OTTHUMT00000379635.3" ; hgnc_id "HGNC:11406" ; level 2 ; orig_coord_info "chr8,98825515,98825540,-" ; protein_id "ENSP00000390500.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STK3--PLEKHF2^ENST00000419617.7" ; transcript_name "STK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TDRD3--LINC00378 HAVANA gene 1001 26013 . + . FI_gene_label "TDRD3^ENSG00000083544.16" ; ID "TDRD3--LINC00378^TDRD3^ENSG00000083544.16" ; ccdsid "CCDS9441.1" ; exon_id "ENSE00003591424.1" ; exon_number 4 ; gene_id "TDRD3--LINC00378^TDRD3^ENSG00000083544.16" ; gene_name TDRD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017007.10" ; hgnc_id "HGNC:20612" ; level 2 ; orig_coord_info "chr13,60460467,60460540,+" ; protein_id "ENSP00000196169.3" ; tag basic CCDS ; transcript_id "TDRD3--LINC00378^ENST00000196169.7" ; transcript_name "TDRD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
TDRD3--LINC00378 HAVANA mRNA 1001 26013 . + . FI_gene_label "TDRD3^ENSG00000083544.16" ; ID "TDRD3--LINC00378^ENST00000196169.7" ; Parent "TDRD3--LINC00378^TDRD3^ENSG00000083544.16" ; ccdsid "CCDS9441.1" ; exon_id "ENSE00003591424.1" ; exon_number 4 ; gene_id "TDRD3--LINC00378^TDRD3^ENSG00000083544.16" ; gene_name TDRD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017007.10" ; hgnc_id "HGNC:20612" ; level 2 ; orig_coord_info "chr13,60460467,60460540,+" ; protein_id "ENSP00000196169.3" ; tag basic CCDS ; transcript_id "TDRD3--LINC00378^ENST00000196169.7" ; transcript_name "TDRD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM131--PDCL3 HAVANA gene 1001 42103 . + . FI_gene_label "TMEM131^ENSG00000075568.17" ; ID "TMEM131--PDCL3^TMEM131^ENSG00000075568.17" ; ccdsid "CCDS46368.1" ; exon_id "ENSE00002299854.2" ; exon_number 1 ; gene_id "TMEM131--PDCL3^TMEM131^ENSG00000075568.17" ; gene_name TMEM131 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153061.10" ; havana_transcript "OTTHUMT00000329285.3" ; hgnc_id "HGNC:30366" ; level 2 ; orig_coord_info "chr2,97995476,97995662,-" ; protein_id "ENSP00000186436.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM131--PDCL3^ENST00000186436.10" ; transcript_name "TMEM131-201" ; transcript_support_level 5 ; transcript_type protein_coding
TMEM131--PDCL3 HAVANA mRNA 1001 42103 . + . FI_gene_label "TMEM131^ENSG00000075568.17" ; ID "TMEM131--PDCL3^ENST00000186436.10" ; Parent "TMEM131--PDCL3^TMEM131^ENSG00000075568.17" ; ccdsid "CCDS46368.1" ; exon_id "ENSE00002299854.2" ; exon_number 1 ; gene_id "TMEM131--PDCL3^TMEM131^ENSG00000075568.17" ; gene_name TMEM131 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153061.10" ; havana_transcript "OTTHUMT00000329285.3" ; hgnc_id "HGNC:30366" ; level 2 ; orig_coord_info "chr2,97995476,97995662,-" ; protein_id "ENSP00000186436.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM131--PDCL3^ENST00000186436.10" ; transcript_name "TMEM131-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TMEM131--PDCL3 HAVANA gene 45107 51378 . + . FI_gene_label "PDCL3^ENSG00000115539.14" ; ID "TMEM131--PDCL3^PDCL3^ENSG00000115539.14" ; ccdsid "CCDS33261.1" ; exon_id "ENSE00001072179.9" ; exon_number 1 ; gene_id "TMEM131--PDCL3^PDCL3^ENSG00000115539.14" ; gene_name PDCL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153141.5" ; havana_transcript "OTTHUMT00000329734.2" ; hgnc_id "HGNC:28860" ; level 2 ; orig_coord_info "chr2,100563068,100563073,+" ; protein_id "ENSP00000264254.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM131--PDCL3^ENST00000264254.11" ; transcript_name "PDCL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM131--PDCL3 HAVANA mRNA 45107 51378 . + . FI_gene_label "PDCL3^ENSG00000115539.14" ; ID "TMEM131--PDCL3^ENST00000264254.11" ; Parent "TMEM131--PDCL3^PDCL3^ENSG00000115539.14" ; ccdsid "CCDS33261.1" ; exon_id "ENSE00001072179.9" ; exon_number 1 ; gene_id "TMEM131--PDCL3^PDCL3^ENSG00000115539.14" ; gene_name PDCL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153141.5" ; havana_transcript "OTTHUMT00000329734.2" ; hgnc_id "HGNC:28860" ; level 2 ; orig_coord_info "chr2,100563068,100563073,+" ; protein_id "ENSP00000264254.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM131--PDCL3^ENST00000264254.11" ; transcript_name "PDCL3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC28--CHEK2 HAVANA gene 40569 63583 . + . FI_gene_label "CHEK2^ENSG00000183765.23" ; ID "TTC28--CHEK2^CHEK2^ENSG00000183765.23" ; ccdsid "CCDS13844.1" ; exon_id "ENSE00003478809.1" ; exon_number 2 ; gene_id "TTC28--CHEK2^CHEK2^ENSG00000183765.23" ; gene_name CHEK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151023.24" ; havana_transcript "OTTHUMT00000321281.1" ; hgnc_id "HGNC:16627" ; level 2 ; orig_coord_info "chr22,28734403,28734721,-" ; protein_id "ENSP00000329012.5" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "TTC28--CHEK2^ENST00000348295.7" ; transcript_name "CHEK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
TTC28--CHEK2 HAVANA mRNA 40569 63583 . + . FI_gene_label "CHEK2^ENSG00000183765.23" ; ID "TTC28--CHEK2^ENST00000348295.7" ; Parent "TTC28--CHEK2^CHEK2^ENSG00000183765.23" ; ccdsid "CCDS13844.1" ; exon_id "ENSE00003478809.1" ; exon_number 2 ; gene_id "TTC28--CHEK2^CHEK2^ENSG00000183765.23" ; gene_name CHEK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151023.24" ; havana_transcript "OTTHUMT00000321281.1" ; hgnc_id "HGNC:16627" ; level 2 ; orig_coord_info "chr22,28734403,28734721,-" ; protein_id "ENSP00000329012.5" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "TTC28--CHEK2^ENST00000348295.7" ; transcript_name "CHEK2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TTC28--CHEK2 HAVANA gene 1001 36980 . + . FI_gene_label "TTC28^ENSG00000100154.14" ; ID "TTC28--CHEK2^TTC28^ENSG00000100154.14" ; ccdsid "CCDS46678.1" ; exon_id "ENSE00001556591.1" ; exon_number 1 ; gene_id "TTC28--CHEK2^TTC28^ENSG00000100154.14" ; gene_name TTC28 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151006.5" ; havana_transcript "OTTHUMT00000320930.3" ; hgnc_id "HGNC:29179" ; level 1 ; orig_coord_info "chr22,28679622,28679723,-" ; protein_id "ENSP00000381003.2" ; tag dotter_confirmed not_organism_supported basic appris_principal_1 exp_conf CCDS ; transcript_id "TTC28--CHEK2^ENST00000397906.6" ; transcript_name "TTC28-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC28--CHEK2 HAVANA mRNA 1001 36980 . + . FI_gene_label "TTC28^ENSG00000100154.14" ; ID "TTC28--CHEK2^ENST00000397906.6" ; Parent "TTC28--CHEK2^TTC28^ENSG00000100154.14" ; ccdsid "CCDS46678.1" ; exon_id "ENSE00001556591.1" ; exon_number 1 ; gene_id "TTC28--CHEK2^TTC28^ENSG00000100154.14" ; gene_name TTC28 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151006.5" ; havana_transcript "OTTHUMT00000320930.3" ; hgnc_id "HGNC:29179" ; level 1 ; orig_coord_info "chr22,28679622,28679723,-" ; protein_id "ENSP00000381003.2" ; tag dotter_confirmed not_organism_supported basic appris_principal_1 exp_conf CCDS ; transcript_id "TTC28--CHEK2^ENST00000397906.6" ; transcript_name "TTC28-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23B--AADAT HAVANA gene 1073 12979 . + . FI_gene_label "TVP23B^ENSG00000171928.14" ; ID "TVP23B--AADAT^TVP23B^ENSG00000171928.14" ; ccdsid "CCDS42274.1" ; exon_id "ENSE00002649249.2" ; exon_number 1 ; gene_id "TVP23B--AADAT^TVP23B^ENSG00000171928.14" ; gene_name TVP23B ; gene_type protein_coding ; havana_gene "OTTHUMG00000059052.7" ; havana_transcript "OTTHUMT00000130667.3" ; hgnc_id "HGNC:20399" ; level 2 ; orig_coord_info "chr17,18781294,18781305,+" ; protein_id "ENSP00000305654.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23B--AADAT^ENST00000307767.13" ; transcript_name "TVP23B-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23B--AADAT HAVANA mRNA 1073 12979 . + . FI_gene_label "TVP23B^ENSG00000171928.14" ; ID "TVP23B--AADAT^ENST00000307767.13" ; Parent "TVP23B--AADAT^TVP23B^ENSG00000171928.14" ; ccdsid "CCDS42274.1" ; exon_id "ENSE00002649249.2" ; exon_number 1 ; gene_id "TVP23B--AADAT^TVP23B^ENSG00000171928.14" ; gene_name TVP23B ; gene_type protein_coding ; havana_gene "OTTHUMG00000059052.7" ; havana_transcript "OTTHUMT00000130667.3" ; hgnc_id "HGNC:20399" ; level 2 ; orig_coord_info "chr17,18781294,18781305,+" ; protein_id "ENSP00000305654.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23B--AADAT^ENST00000307767.13" ; transcript_name "TVP23B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23B--AADAT HAVANA gene 17661 31309 . + . FI_gene_label "AADAT^ENSG00000109576.14" ; ID "TVP23B--AADAT^AADAT^ENSG00000109576.14" ; ccdsid "CCDS3814.1" ; exon_id "ENSE00001354788.5" ; exon_number 1 ; gene_id "TVP23B--AADAT^AADAT^ENSG00000109576.14" ; gene_name AADAT ; gene_type protein_coding ; havana_gene "OTTHUMG00000160912.5" ; havana_transcript "OTTHUMT00000362952.2" ; hgnc_id "HGNC:17929" ; level 2 ; orig_coord_info "chr4,170089624,170089690,-" ; protein_id "ENSP00000336808.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "TVP23B--AADAT^ENST00000337664.9" ; transcript_name "AADAT-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23B--AADAT HAVANA mRNA 17661 31309 . + . FI_gene_label "AADAT^ENSG00000109576.14" ; ID "TVP23B--AADAT^ENST00000337664.9" ; Parent "TVP23B--AADAT^AADAT^ENSG00000109576.14" ; ccdsid "CCDS3814.1" ; exon_id "ENSE00001354788.5" ; exon_number 1 ; gene_id "TVP23B--AADAT^AADAT^ENSG00000109576.14" ; gene_name AADAT ; gene_type protein_coding ; havana_gene "OTTHUMG00000160912.5" ; havana_transcript "OTTHUMT00000362952.2" ; hgnc_id "HGNC:17929" ; level 2 ; orig_coord_info "chr4,170089624,170089690,-" ; protein_id "ENSP00000336808.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "TVP23B--AADAT^ENST00000337664.9" ; transcript_name "AADAT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP49--ZFAND3 HAVANA gene 26338 39442 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "USP49--ZFAND3^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "USP49--ZFAND3^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP49--ZFAND3^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP49--ZFAND3 HAVANA mRNA 26338 39442 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "USP49--ZFAND3^ENST00000287218.9" ; Parent "USP49--ZFAND3^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "USP49--ZFAND3^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "USP49--ZFAND3^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
USP49--ZFAND3 HAVANA gene 1001 15588 . + . FI_gene_label "USP49^ENSG00000164663.14" ; ID "USP49--ZFAND3^USP49^ENSG00000164663.14" ; ccdsid "CCDS4861.1" ; exon_id "ENSE00001086408.3" ; exon_number 4 ; gene_id "USP49--ZFAND3^USP49^ENSG00000164663.14" ; gene_name USP49 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014688.10" ; havana_transcript "OTTHUMT00000040536.3" ; hgnc_id "HGNC:20078" ; level 2 ; orig_coord_info "chr6,41805628,41806983,-" ; protein_id "ENSP00000362097.1" ; tag basic CCDS ; transcript_id "USP49--ZFAND3^ENST00000373006.5" ; transcript_name "USP49-201" ; transcript_support_level 1 ; transcript_type protein_coding
USP49--ZFAND3 HAVANA mRNA 1001 15588 . + . FI_gene_label "USP49^ENSG00000164663.14" ; ID "USP49--ZFAND3^ENST00000373006.5" ; Parent "USP49--ZFAND3^USP49^ENSG00000164663.14" ; ccdsid "CCDS4861.1" ; exon_id "ENSE00001086408.3" ; exon_number 4 ; gene_id "USP49--ZFAND3^USP49^ENSG00000164663.14" ; gene_name USP49 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014688.10" ; havana_transcript "OTTHUMT00000040536.3" ; hgnc_id "HGNC:20078" ; level 2 ; orig_coord_info "chr6,41805628,41806983,-" ; protein_id "ENSP00000362097.1" ; tag basic CCDS ; transcript_id "USP49--ZFAND3^ENST00000373006.5" ; transcript_name "USP49-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS13B--RNU6-144P HAVANA gene 1001 19227 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "VPS13B--RNU6-144P^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "VPS13B--RNU6-144P^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "VPS13B--RNU6-144P^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS13B--RNU6-144P HAVANA mRNA 1001 19227 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "VPS13B--RNU6-144P^ENST00000355155.5" ; Parent "VPS13B--RNU6-144P^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "VPS13B--RNU6-144P^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "VPS13B--RNU6-144P^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS13B--ZYXP1 HAVANA gene 1001 19227 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "VPS13B--ZYXP1^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "VPS13B--ZYXP1^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "VPS13B--ZYXP1^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS13B--ZYXP1 HAVANA mRNA 1001 19227 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "VPS13B--ZYXP1^ENST00000355155.5" ; Parent "VPS13B--ZYXP1^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "VPS13B--ZYXP1^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "VPS13B--ZYXP1^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFAND3--FRS3 ENSEMBL gene 19807 26353 . + . FI_gene_label "FRS3^ENSG00000137218.10" ; ID "ZFAND3--FRS3^FRS3^ENSG00000137218.10" ; ccdsid "CCDS4860.1" ; exon_id "ENSE00003535106.1" ; exon_number 2 ; gene_id "ZFAND3--FRS3^FRS3^ENSG00000137218.10" ; gene_name FRS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014686.6" ; hgnc_id "HGNC:16970" ; level 3 ; orig_coord_info "chr6,41776922,41776987,-" ; protein_id "ENSP00000259748.2" ; tag basic appris_principal_1 CCDS ; transcript_id "ZFAND3--FRS3^ENST00000259748.6" ; transcript_name "FRS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZFAND3--FRS3 ENSEMBL mRNA 19807 26353 . + . FI_gene_label "FRS3^ENSG00000137218.10" ; ID "ZFAND3--FRS3^ENST00000259748.6" ; Parent "ZFAND3--FRS3^FRS3^ENSG00000137218.10" ; ccdsid "CCDS4860.1" ; exon_id "ENSE00003535106.1" ; exon_number 2 ; gene_id "ZFAND3--FRS3^FRS3^ENSG00000137218.10" ; gene_name FRS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014686.6" ; hgnc_id "HGNC:16970" ; level 3 ; orig_coord_info "chr6,41776922,41776987,-" ; protein_id "ENSP00000259748.2" ; tag basic appris_principal_1 CCDS ; transcript_id "ZFAND3--FRS3^ENST00000259748.6" ; transcript_name "FRS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFAND3--FRS3 HAVANA gene 1001 14105 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "ZFAND3--FRS3^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "ZFAND3--FRS3^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFAND3--FRS3^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZFAND3--FRS3 HAVANA mRNA 1001 14105 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "ZFAND3--FRS3^ENST00000287218.9" ; Parent "ZFAND3--FRS3^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "ZFAND3--FRS3^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFAND3--FRS3^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC009283.1--ITPR1 HAVANA gene 1001 1645 . + . FI_gene_label "AC009283.1^ENSG00000273576.1" ; ID "AC009283.1--ITPR1^AC009283.1^ENSG00000273576.1" ; exon_id "ENSE00003731811.1" ; exon_number 1 ; gene_id "AC009283.1--ITPR1^AC009283.1^ENSG00000273576.1" ; gene_name "AC009283.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186646.1" ; havana_transcript "OTTHUMT00000473524.1" ; level 2 ; orig_coord_info "chr17,39566915,39567559,+" ; tag basic ; transcript_id "AC009283.1--ITPR1^ENST00000615852.1" ; transcript_name "AC009283.1-201" ; transcript_support_level NA ; transcript_type lncRNA
AC009283.1--ITPR1 HAVANA RNA 1001 1645 . + . FI_gene_label "AC009283.1^ENSG00000273576.1" ; ID "AC009283.1--ITPR1^ENST00000615852.1" ; Parent "AC009283.1--ITPR1^AC009283.1^ENSG00000273576.1" ; exon_id "ENSE00003731811.1" ; exon_number 1 ; gene_id "AC009283.1--ITPR1^AC009283.1^ENSG00000273576.1" ; gene_name "AC009283.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186646.1" ; havana_transcript "OTTHUMT00000473524.1" ; level 2 ; orig_coord_info "chr17,39566915,39567559,+" ; tag basic ; transcript_id "AC009283.1--ITPR1^ENST00000615852.1" ; transcript_name "AC009283.1-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
ATP6V0A2--AC018692.1 HAVANA gene 39174 40659 . + . FI_gene_label "AC018692.1^ENSG00000279321.1" ; ID "ATP6V0A2--AC018692.1^AC018692.1^ENSG00000279321.1" ; exon_id "ENSE00003757411.1" ; exon_number 1 ; gene_id "ATP6V0A2--AC018692.1^AC018692.1^ENSG00000279321.1" ; gene_name "AC018692.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189461.1" ; havana_transcript "OTTHUMT00000479733.1" ; level 2 ; orig_coord_info "chr21,9913361,9913506,+" ; tag basic ; transcript_id "ATP6V0A2--AC018692.1^ENST00000623559.1" ; transcript_name "AC018692.1-202" ; transcript_support_level 5 ; transcript_type lncRNA
ATP6V0A2--AC018692.1 HAVANA RNA 39174 40659 . + . FI_gene_label "AC018692.1^ENSG00000279321.1" ; ID "ATP6V0A2--AC018692.1^ENST00000623559.1" ; Parent "ATP6V0A2--AC018692.1^AC018692.1^ENSG00000279321.1" ; exon_id "ENSE00003757411.1" ; exon_number 1 ; gene_id "ATP6V0A2--AC018692.1^AC018692.1^ENSG00000279321.1" ; gene_name "AC018692.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189461.1" ; havana_transcript "OTTHUMT00000479733.1" ; level 2 ; orig_coord_info "chr21,9913361,9913506,+" ; tag basic ; transcript_id "ATP6V0A2--AC018692.1^ENST00000623559.1" ; transcript_name "AC018692.1-202" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
ATP6V0A2--CR382285.1 HAVANA gene 42025 42571 . + . FI_gene_label "CR382285.1^ENSG00000270533.2" ; ID "ATP6V0A2--CR382285.1^CR382285.1^ENSG00000270533.2" ; exon_id "ENSE00003684849.1" ; exon_number 1 ; gene_id "ATP6V0A2--CR382285.1^CR382285.1^ENSG00000270533.2" ; gene_name "CR382285.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000184872.2" ; havana_transcript "OTTHUMT00000469287.1" ; level 1 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr21,9997487,9998033,-" ; tag pseudo_consens basic ; transcript_id "ATP6V0A2--CR382285.1^ENST00000604687.1" ; transcript_name "CR382285.1-202" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
ATP6V0A2--CR382285.1 HAVANA RNA 42025 42571 . + . FI_gene_label "CR382285.1^ENSG00000270533.2" ; ID "ATP6V0A2--CR382285.1^ENST00000604687.1" ; Parent "ATP6V0A2--CR382285.1^CR382285.1^ENSG00000270533.2" ; exon_id "ENSE00003684849.1" ; exon_number 1 ; gene_id "ATP6V0A2--CR382285.1^CR382285.1^ENSG00000270533.2" ; gene_name "CR382285.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000184872.2" ; havana_transcript "OTTHUMT00000469287.1" ; level 1 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr21,9997487,9998033,-" ; tag pseudo_consens basic ; transcript_id "ATP6V0A2--CR382285.1^ENST00000604687.1" ; transcript_name "CR382285.1-202" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
L1 and L2 created:
C17orf80--AC239799.2 HAVANA gene 13258 15061 . + . FI_gene_label "AC239799.2^ENSG00000287190.1" ; ID "C17orf80--AC239799.2^AC239799.2^ENSG00000287190.1" ; exon_id "ENSE00003872295.1" ; exon_number 1 ; gene_id "C17orf80--AC239799.2^AC239799.2^ENSG00000287190.1" ; gene_name "AC239799.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194047.1" ; havana_transcript "OTTHUMT00000509452.1" ; level 2 ; orig_coord_info "chr1,146050441,146052244,-" ; tag basic TAGENE ; transcript_id "C17orf80--AC239799.2^ENST00000659152.1" ; transcript_name "AC239799.2-201" ; transcript_type lncRNA
C17orf80--AC239799.2 HAVANA RNA 13258 15061 . + . FI_gene_label "AC239799.2^ENSG00000287190.1" ; ID "C17orf80--AC239799.2^ENST00000659152.1" ; Parent "C17orf80--AC239799.2^AC239799.2^ENSG00000287190.1" ; exon_id "ENSE00003872295.1" ; exon_number 1 ; gene_id "C17orf80--AC239799.2^AC239799.2^ENSG00000287190.1" ; gene_name "AC239799.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194047.1" ; havana_transcript "OTTHUMT00000509452.1" ; level 2 ; orig_coord_info "chr1,146050441,146052244,-" ; tag basic TAGENE ; transcript_id "C17orf80--AC239799.2^ENST00000659152.1" ; transcript_name "AC239799.2-201" ; transcript_type lncRNA
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
CRYZL2P--SEC16B HAVANA RNA 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^ENST00000462729.2" ; Parent "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
DCAF6--LINC00511 HAVANA gene 42542 86749 . + . FI_gene_label "LINC00511^ENSG00000227036.8" ; ID "DCAF6--LINC00511^LINC00511^ENSG00000227036.8" ; exon_id "ENSE00001629418.1" ; exon_number 1 ; gene_id "DCAF6--LINC00511^LINC00511^ENSG00000227036.8" ; gene_name LINC00511 ; gene_type lncRNA ; havana_gene "OTTHUMG00000132227.20" ; havana_transcript "OTTHUMT00000255287.2" ; hgnc_id "HGNC:43564" ; level 2 ; orig_coord_info "chr17,72592203,72592804,-" ; transcript_id "DCAF6--LINC00511^ENST00000453722.6" ; transcript_name "LINC00511-201" ; transcript_support_level 2 ; transcript_type lncRNA
DCAF6--LINC00511 HAVANA RNA 42542 86749 . + . FI_gene_label "LINC00511^ENSG00000227036.8" ; ID "DCAF6--LINC00511^ENST00000453722.6" ; Parent "DCAF6--LINC00511^LINC00511^ENSG00000227036.8" ; exon_id "ENSE00001629418.1" ; exon_number 1 ; gene_id "DCAF6--LINC00511^LINC00511^ENSG00000227036.8" ; gene_name LINC00511 ; gene_type lncRNA ; havana_gene "OTTHUMG00000132227.20" ; havana_transcript "OTTHUMT00000255287.2" ; hgnc_id "HGNC:43564" ; level 2 ; orig_coord_info "chr17,72592203,72592804,-" ; transcript_id "DCAF6--LINC00511^ENST00000453722.6" ; transcript_name "LINC00511-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
DDHD2--AC068672.2 HAVANA gene 28552 30971 . + . FI_gene_label "AC068672.2^ENSG00000253377.2" ; ID "DDHD2--AC068672.2^AC068672.2^ENSG00000253377.2" ; exon_id "ENSE00002091619.1" ; exon_number 1 ; gene_id "DDHD2--AC068672.2^AC068672.2^ENSG00000253377.2" ; gene_name "AC068672.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163916.3" ; havana_transcript "OTTHUMT00000376384.1" ; level 2 ; orig_coord_info "chr8,31275596,31275808,+" ; transcript_id "DDHD2--AC068672.2^ENST00000524022.1" ; transcript_name "AC068672.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
DDHD2--AC068672.2 HAVANA RNA 28552 30971 . + . FI_gene_label "AC068672.2^ENSG00000253377.2" ; ID "DDHD2--AC068672.2^ENST00000524022.1" ; Parent "DDHD2--AC068672.2^AC068672.2^ENSG00000253377.2" ; exon_id "ENSE00002091619.1" ; exon_number 1 ; gene_id "DDHD2--AC068672.2^AC068672.2^ENSG00000253377.2" ; gene_name "AC068672.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000163916.3" ; havana_transcript "OTTHUMT00000376384.1" ; level 2 ; orig_coord_info "chr8,31275596,31275808,+" ; transcript_id "DDHD2--AC068672.2^ENST00000524022.1" ; transcript_name "AC068672.2-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
DDHD2--KCTD9P6 HAVANA gene 28498 29588 . + . FI_gene_label "KCTD9P6^ENSG00000229211.3" ; ID "DDHD2--KCTD9P6^KCTD9P6^ENSG00000229211.3" ; exon_id "ENSE00002113312.1" ; exon_number 1 ; gene_id "DDHD2--KCTD9P6^KCTD9P6^ENSG00000229211.3" ; gene_name KCTD9P6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000163896.1" ; havana_transcript "OTTHUMT00000376252.1" ; hgnc_id "HGNC:49915" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,31220519,31220984,-" ; tag pseudo_consens basic ; transcript_id "DDHD2--KCTD9P6^ENST00000522306.1" ; transcript_name "KCTD9P6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DDHD2--KCTD9P6 HAVANA RNA 28498 29588 . + . FI_gene_label "KCTD9P6^ENSG00000229211.3" ; ID "DDHD2--KCTD9P6^ENST00000522306.1" ; Parent "DDHD2--KCTD9P6^KCTD9P6^ENSG00000229211.3" ; exon_id "ENSE00002113312.1" ; exon_number 1 ; gene_id "DDHD2--KCTD9P6^KCTD9P6^ENSG00000229211.3" ; gene_name KCTD9P6 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000163896.1" ; havana_transcript "OTTHUMT00000376252.1" ; hgnc_id "HGNC:49915" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,31220519,31220984,-" ; tag pseudo_consens basic ; transcript_id "DDHD2--KCTD9P6^ENST00000522306.1" ; transcript_name "KCTD9P6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
FBXO25--AC240565.1 HAVANA gene 26102 34357 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
FBXO25--AC240565.1 HAVANA RNA 26102 34357 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "FBXO25--AC240565.1^ENST00000624936.2" ; Parent "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
GOSR1--LINC00974 HAVANA gene 23899 28039 . + . FI_gene_label "LINC00974^ENSG00000226629.1" ; ID "GOSR1--LINC00974^LINC00974^ENSG00000226629.1" ; exon_id "ENSE00001620371.1" ; exon_number 1 ; gene_id "GOSR1--LINC00974^LINC00974^ENSG00000226629.1" ; gene_name LINC00974 ; gene_type lncRNA ; havana_gene "OTTHUMG00000133607.1" ; havana_transcript "OTTHUMT00000257715.1" ; hgnc_id "HGNC:27105" ; level 2 ; orig_coord_info "chr17,41554280,41554495,-" ; tag basic ; transcript_id "GOSR1--LINC00974^ENST00000456403.1" ; transcript_name "LINC00974-201" ; transcript_support_level 2 ; transcript_type lncRNA
GOSR1--LINC00974 HAVANA RNA 23899 28039 . + . FI_gene_label "LINC00974^ENSG00000226629.1" ; ID "GOSR1--LINC00974^ENST00000456403.1" ; Parent "GOSR1--LINC00974^LINC00974^ENSG00000226629.1" ; exon_id "ENSE00001620371.1" ; exon_number 1 ; gene_id "GOSR1--LINC00974^LINC00974^ENSG00000226629.1" ; gene_name LINC00974 ; gene_type lncRNA ; havana_gene "OTTHUMG00000133607.1" ; havana_transcript "OTTHUMT00000257715.1" ; hgnc_id "HGNC:27105" ; level 2 ; orig_coord_info "chr17,41554280,41554495,-" ; tag basic ; transcript_id "GOSR1--LINC00974^ENST00000456403.1" ; transcript_name "LINC00974-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
LINC00624--AATF HAVANA gene 1001 11564 . + . FI_gene_label "LINC00624^ENSG00000278811.4" ; ID "LINC00624--AATF^LINC00624^ENSG00000278811.4" ; exon_id "ENSE00003713744.1" ; exon_number 1 ; gene_id "LINC00624--AATF^LINC00624^ENSG00000278811.4" ; gene_name LINC00624 ; gene_type lncRNA ; havana_gene "OTTHUMG00000041476.3" ; havana_transcript "OTTHUMT00000099377.3" ; hgnc_id "HGNC:44254" ; level 2 ; orig_coord_info "chr1,147517443,147517875,-" ; tag basic ; transcript_id "LINC00624--AATF^ENST00000619867.4" ; transcript_name "LINC00624-201" ; transcript_support_level 1 ; transcript_type lncRNA
LINC00624--AATF HAVANA RNA 1001 11564 . + . FI_gene_label "LINC00624^ENSG00000278811.4" ; ID "LINC00624--AATF^ENST00000619867.4" ; Parent "LINC00624--AATF^LINC00624^ENSG00000278811.4" ; exon_id "ENSE00003713744.1" ; exon_number 1 ; gene_id "LINC00624--AATF^LINC00624^ENSG00000278811.4" ; gene_name LINC00624 ; gene_type lncRNA ; havana_gene "OTTHUMG00000041476.3" ; havana_transcript "OTTHUMT00000099377.3" ; hgnc_id "HGNC:44254" ; level 2 ; orig_coord_info "chr1,147517443,147517875,-" ; tag basic ; transcript_id "LINC00624--AATF^ENST00000619867.4" ; transcript_name "LINC00624-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
PSMD3--LINC01138 HAVANA gene 40275 44346 . + . FI_gene_label "LINC01138^ENSG00000274020.4" ; ID "PSMD3--LINC01138^LINC01138^ENSG00000274020.4" ; exon_id "ENSE00001696836.1" ; exon_number 1 ; gene_id "PSMD3--LINC01138^LINC01138^ENSG00000274020.4" ; gene_name LINC01138 ; gene_type lncRNA ; havana_gene "OTTHUMG00000185296.8" ; havana_transcript "OTTHUMT00000039545.2" ; hgnc_id "HGNC:49454" ; level 2 ; orig_coord_info "chr1,148297129,148297271,-" ; transcript_id "PSMD3--LINC01138^ENST00000434245.3" ; transcript_name "LINC01138-201" ; transcript_support_level 5 ; transcript_type lncRNA
PSMD3--LINC01138 HAVANA RNA 40275 44346 . + . FI_gene_label "LINC01138^ENSG00000274020.4" ; ID "PSMD3--LINC01138^ENST00000434245.3" ; Parent "PSMD3--LINC01138^LINC01138^ENSG00000274020.4" ; exon_id "ENSE00001696836.1" ; exon_number 1 ; gene_id "PSMD3--LINC01138^LINC01138^ENSG00000274020.4" ; gene_name LINC01138 ; gene_type lncRNA ; havana_gene "OTTHUMG00000185296.8" ; havana_transcript "OTTHUMT00000039545.2" ; hgnc_id "HGNC:49454" ; level 2 ; orig_coord_info "chr1,148297129,148297271,-" ; transcript_id "PSMD3--LINC01138^ENST00000434245.3" ; transcript_name "LINC01138-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
PWRN1--UBE3A HAVANA gene 25026 30052 . + . FI_gene_label "PWRN1^ENSG00000259905.7" ; ID "PWRN1--UBE3A^PWRN1^ENSG00000259905.7" ; exon_id "ENSE00002622836.1" ; exon_number 1 ; gene_id "PWRN1--UBE3A^PWRN1^ENSG00000259905.7" ; gene_name PWRN1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000173077.34" ; havana_transcript "OTTHUMT00000431874.1" ; hgnc_id "HGNC:33235" ; level 2 ; orig_coord_info "chr15,24235078,24235159,+" ; tag dotter_confirmed ; transcript_id "PWRN1--UBE3A^ENST00000561964.1" ; transcript_name "PWRN1-201" ; transcript_support_level 5 ; transcript_type lncRNA
PWRN1--UBE3A HAVANA RNA 25026 30052 . + . FI_gene_label "PWRN1^ENSG00000259905.7" ; ID "PWRN1--UBE3A^ENST00000561964.1" ; Parent "PWRN1--UBE3A^PWRN1^ENSG00000259905.7" ; exon_id "ENSE00002622836.1" ; exon_number 1 ; gene_id "PWRN1--UBE3A^PWRN1^ENSG00000259905.7" ; gene_name PWRN1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000173077.34" ; havana_transcript "OTTHUMT00000431874.1" ; hgnc_id "HGNC:33235" ; level 2 ; orig_coord_info "chr15,24235078,24235159,+" ; tag dotter_confirmed ; transcript_id "PWRN1--UBE3A^ENST00000561964.1" ; transcript_name "PWRN1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
RBM47--UGDH-AS1 HAVANA gene 22689 29475 . + . FI_gene_label "UGDH-AS1^ENSG00000249348.1" ; ID "RBM47--UGDH-AS1^UGDH-AS1^ENSG00000249348.1" ; exon_id "ENSE00002078451.1" ; exon_number 1 ; gene_id "RBM47--UGDH-AS1^UGDH-AS1^ENSG00000249348.1" ; gene_name "UGDH-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000160540.2" ; havana_transcript "OTTHUMT00000361033.1" ; hgnc_id "HGNC:40601" ; level 2 ; orig_coord_info "chr4,39528019,39528338,+" ; tag basic ; transcript_id "RBM47--UGDH-AS1^ENST00000504032.1" ; transcript_name "UGDH-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
RBM47--UGDH-AS1 HAVANA RNA 22689 29475 . + . FI_gene_label "UGDH-AS1^ENSG00000249348.1" ; ID "RBM47--UGDH-AS1^ENST00000504032.1" ; Parent "RBM47--UGDH-AS1^UGDH-AS1^ENSG00000249348.1" ; exon_id "ENSE00002078451.1" ; exon_number 1 ; gene_id "RBM47--UGDH-AS1^UGDH-AS1^ENSG00000249348.1" ; gene_name "UGDH-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000160540.2" ; havana_transcript "OTTHUMT00000361033.1" ; hgnc_id "HGNC:40601" ; level 2 ; orig_coord_info "chr4,39528019,39528338,+" ; tag basic ; transcript_id "RBM47--UGDH-AS1^ENST00000504032.1" ; transcript_name "UGDH-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
RPF2--HOXB-AS3 HAVANA gene 19596 24179 . + . FI_gene_label "HOXB-AS3^ENSG00000233101.10" ; ID "RPF2--HOXB-AS3^HOXB-AS3^ENSG00000233101.10" ; exon_id "ENSE00002385545.2" ; exon_number 1 ; gene_id "RPF2--HOXB-AS3^HOXB-AS3^ENSG00000233101.10" ; gene_name "HOXB-AS3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159919.3" ; havana_transcript "OTTHUMT00000358249.2" ; hgnc_id "HGNC:40283" ; level 2 ; orig_coord_info "chr17,48592292,48592364,+" ; transcript_id "RPF2--HOXB-AS3^ENST00000429755.8" ; transcript_name "HOXB-AS3-201" ; transcript_support_level 2 ; transcript_type lncRNA
RPF2--HOXB-AS3 HAVANA RNA 19596 24179 . + . FI_gene_label "HOXB-AS3^ENSG00000233101.10" ; ID "RPF2--HOXB-AS3^ENST00000429755.8" ; Parent "RPF2--HOXB-AS3^HOXB-AS3^ENSG00000233101.10" ; exon_id "ENSE00002385545.2" ; exon_number 1 ; gene_id "RPF2--HOXB-AS3^HOXB-AS3^ENSG00000233101.10" ; gene_name "HOXB-AS3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000159919.3" ; havana_transcript "OTTHUMT00000358249.2" ; hgnc_id "HGNC:40283" ; level 2 ; orig_coord_info "chr17,48592292,48592364,+" ; transcript_id "RPF2--HOXB-AS3^ENST00000429755.8" ; transcript_name "HOXB-AS3-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
RRAS2--AC020637.1 HAVANA gene 17819 25740 . + . FI_gene_label "AC020637.1^ENSG00000258231.5" ; ID "RRAS2--AC020637.1^AC020637.1^ENSG00000258231.5" ; exon_id "ENSE00002337014.1" ; exon_number 1 ; gene_id "RRAS2--AC020637.1^AC020637.1^ENSG00000258231.5" ; gene_name "AC020637.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169963.2" ; havana_transcript "OTTHUMT00000406685.1" ; level 1 ; orig_coord_info "chr12,58544124,58544179,+" ; tag basic exp_conf ; transcript_id "RRAS2--AC020637.1^ENST00000546977.5" ; transcript_name "AC020637.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
RRAS2--AC020637.1 HAVANA RNA 17819 25740 . + . FI_gene_label "AC020637.1^ENSG00000258231.5" ; ID "RRAS2--AC020637.1^ENST00000546977.5" ; Parent "RRAS2--AC020637.1^AC020637.1^ENSG00000258231.5" ; exon_id "ENSE00002337014.1" ; exon_number 1 ; gene_id "RRAS2--AC020637.1^AC020637.1^ENSG00000258231.5" ; gene_name "AC020637.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169963.2" ; havana_transcript "OTTHUMT00000406685.1" ; level 1 ; orig_coord_info "chr12,58544124,58544179,+" ; tag basic exp_conf ; transcript_id "RRAS2--AC020637.1^ENST00000546977.5" ; transcript_name "AC020637.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
SLC39A11--AC023796.1 HAVANA gene 27990 37669 . + . FI_gene_label "AC023796.1^ENSG00000255745.2" ; ID "SLC39A11--AC023796.1^AC023796.1^ENSG00000255745.2" ; exon_id "ENSE00002314061.1" ; exon_number 1 ; gene_id "SLC39A11--AC023796.1^AC023796.1^ENSG00000255745.2" ; gene_name "AC023796.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169029.8" ; havana_transcript "OTTHUMT00000402020.1" ; level 2 ; orig_coord_info "chr12,24704565,24704756,+" ; transcript_id "SLC39A11--AC023796.1^ENST00000536131.1" ; transcript_name "AC023796.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
SLC39A11--AC023796.1 HAVANA RNA 27990 37669 . + . FI_gene_label "AC023796.1^ENSG00000255745.2" ; ID "SLC39A11--AC023796.1^ENST00000536131.1" ; Parent "SLC39A11--AC023796.1^AC023796.1^ENSG00000255745.2" ; exon_id "ENSE00002314061.1" ; exon_number 1 ; gene_id "SLC39A11--AC023796.1^AC023796.1^ENSG00000255745.2" ; gene_name "AC023796.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169029.8" ; havana_transcript "OTTHUMT00000402020.1" ; level 2 ; orig_coord_info "chr12,24704565,24704756,+" ; transcript_id "SLC39A11--AC023796.1^ENST00000536131.1" ; transcript_name "AC023796.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TDRD3--LINC00378 HAVANA gene 32457 34859 . + . FI_gene_label "LINC00378^ENSG00000225249.6" ; ID "TDRD3--LINC00378^LINC00378^ENSG00000225249.6" ; exon_id "ENSE00001646491.1" ; exon_number 1 ; gene_id "TDRD3--LINC00378^LINC00378^ENSG00000225249.6" ; gene_name LINC00378 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017008.9" ; havana_transcript "OTTHUMT00000045180.1" ; hgnc_id "HGNC:42704" ; level 2 ; orig_coord_info "chr13,60685199,60685352,+" ; transcript_id "TDRD3--LINC00378^ENST00000413402.5" ; transcript_name "LINC00378-201" ; transcript_support_level 5 ; transcript_type lncRNA
TDRD3--LINC00378 HAVANA RNA 32457 34859 . + . FI_gene_label "LINC00378^ENSG00000225249.6" ; ID "TDRD3--LINC00378^ENST00000413402.5" ; Parent "TDRD3--LINC00378^LINC00378^ENSG00000225249.6" ; exon_id "ENSE00001646491.1" ; exon_number 1 ; gene_id "TDRD3--LINC00378^LINC00378^ENSG00000225249.6" ; gene_name LINC00378 ; gene_type lncRNA ; havana_gene "OTTHUMG00000017008.9" ; havana_transcript "OTTHUMT00000045180.1" ; hgnc_id "HGNC:42704" ; level 2 ; orig_coord_info "chr13,60685199,60685352,+" ; transcript_id "TDRD3--LINC00378^ENST00000413402.5" ; transcript_name "LINC00378-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
VPS13B--RNU6-144P ENSEMBL gene 80306 80412 . + . FI_gene_label "RNU6-144P^ENSG00000206678.1" ; ID "VPS13B--RNU6-144P^RNU6-144P^ENSG00000206678.1" ; exon_id "ENSE00001807450.1" ; exon_number 1 ; gene_id "VPS13B--RNU6-144P^RNU6-144P^ENSG00000206678.1" ; gene_name "RNU6-144P" ; gene_type snRNA ; hgnc_id "HGNC:47107" ; level 3 ; orig_coord_info "chr8,137105352,137105458,+" ; tag basic ; transcript_id "VPS13B--RNU6-144P^ENST00000383951.1" ; transcript_name "RNU6-144P-201" ; transcript_support_level NA ; transcript_type snRNA
VPS13B--RNU6-144P ENSEMBL RNA 80306 80412 . + . FI_gene_label "RNU6-144P^ENSG00000206678.1" ; ID "VPS13B--RNU6-144P^ENST00000383951.1" ; Parent "VPS13B--RNU6-144P^RNU6-144P^ENSG00000206678.1" ; exon_id "ENSE00001807450.1" ; exon_number 1 ; gene_id "VPS13B--RNU6-144P^RNU6-144P^ENSG00000206678.1" ; gene_name "RNU6-144P" ; gene_type snRNA ; hgnc_id "HGNC:47107" ; level 3 ; orig_coord_info "chr8,137105352,137105458,+" ; tag basic ; transcript_id "VPS13B--RNU6-144P^ENST00000383951.1" ; transcript_name "RNU6-144P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
VPS13B--ZYXP1 HAVANA gene 80306 80423 . + . FI_gene_label "ZYXP1^ENSG00000274572.1" ; ID "VPS13B--ZYXP1^ZYXP1^ENSG00000274572.1" ; exon_id "ENSE00003717561.1" ; exon_number 1 ; gene_id "VPS13B--ZYXP1^ZYXP1^ENSG00000274572.1" ; gene_name ZYXP1 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187758.1" ; havana_transcript "OTTHUMT00000475522.1" ; hgnc_id "HGNC:51695" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr8,137424904,137425021,-" ; tag basic ; transcript_id "VPS13B--ZYXP1^ENST00000617638.1" ; transcript_name "ZYXP1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
VPS13B--ZYXP1 HAVANA RNA 80306 80423 . + . FI_gene_label "ZYXP1^ENSG00000274572.1" ; ID "VPS13B--ZYXP1^ENST00000617638.1" ; Parent "VPS13B--ZYXP1^ZYXP1^ENSG00000274572.1" ; exon_id "ENSE00003717561.1" ; exon_number 1 ; gene_id "VPS13B--ZYXP1^ZYXP1^ENSG00000274572.1" ; gene_name ZYXP1 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187758.1" ; havana_transcript "OTTHUMT00000475522.1" ; hgnc_id "HGNC:51695" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr8,137424904,137425021,-" ; tag basic ; transcript_id "VPS13B--ZYXP1^ENST00000617638.1" ; transcript_name "ZYXP1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
1772 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
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------------------------------ Check8: check cds -------------------------------
No problem found
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----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
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----------------------------- Check10: check utrs ------------------------------
3086 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
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------------------------ Check11: all level2 locations -------------------------
No problem found
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------------------------ Check12: all level1 locations -------------------------
We fixed 112 wrong level1 location cases
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---------------------- Check13: remove identical isoforms ----------------------
None found
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------ End checks (done in 2 second) ------
GFF3 file parsed