Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/3e78f96360114309e838eaaed0fa8d/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/ab61d044df6fcf8889d98510eb0aa8/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/83979af9c418aad78691ede56e82dc/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260515_LH00995_0041_A23WJ53LT4/InterOp/ExtendedTileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/83979af9c418aad78691ede56e82dc/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/5a3a471f78a74ab22009c1dad2b632/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260515_LH00995_0041_A23WJ53LT4/InterOp/EmpiricalPhasingMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/60698da7936d4a1022cdef87174f67/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/3e78f96360114309e838eaaed0fa8d/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/83979af9c418aad78691ede56e82dc/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/700509e0a9fabd6f078de6c8b1bc17/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/7e620121665bdd240acdf6220b6e26/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/ab61d044df6fcf8889d98510eb0aa8/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260515_LH00995_0041_A23WJ53LT4/InterOp/TileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/700509e0a9fabd6f078de6c8b1bc17/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/869096b028b6ec53c19411d65513dd/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/869096b028b6ec53c19411d65513dd/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/ab61d044df6fcf8889d98510eb0aa8/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/869096b028b6ec53c19411d65513dd/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/5a3a471f78a74ab22009c1dad2b632/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/3e78f96360114309e838eaaed0fa8d/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/4ff5a5e9595e6312142bb83f774e75/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/4ff5a5e9595e6312142bb83f774e75/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/7e620121665bdd240acdf6220b6e26/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/7e620121665bdd240acdf6220b6e26/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/700509e0a9fabd6f078de6c8b1bc17/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/4ff5a5e9595e6312142bb83f774e75/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/60698da7936d4a1022cdef87174f67/.command.run
  Downloading: s3://natera-labdata-rnd-dev-s3/illumina/20260515_LH00995_0041_A23WJ53LT4/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/5a3a471f78a74ab22009c1dad2b632/output/Reports/Index_Hopping_Counts.csv
==> STAGING COMPLETE (30 inputs)

Wrote flowcell_qc.csv with 13/13 metrics populated