Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/629cfef7121a84be7afa5bd721afda/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/629cfef7121a84be7afa5bd721afda/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/dc3aec2566cd6ee505f0009abe4574/aih-tih-sc-06a169-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/8b345b53e7ac042e97ed4582a0f122/aih-tih-sc-06a169-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 280849015
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-06a169-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	280849015
Known Splicing Events:	278312156
Partial Novel Splicing Events:	1667487
Novel Splicing Events:	776945
Filtered Splicing Events:	92427

Total splicing  Junctions:	393591
Known Splicing Junctions:	242510
Partial Novel Splicing Junctions:	97992
Novel Splicing Junctions:	53089

===================================================================
Create BED file ...
Create Interact file ...