Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/1b7b95e236f6c6901018dddb78955c/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/668ccfce66244beeeb3a971aef16f7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/668ccfce66244beeeb3a971aef16f7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/18f6ba4edcdc30a4d4b79ec1baa49d/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory