Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/634be424d910e31b5cd0f516a38eb6/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/f2d0c7bbdb8f385afc9ad766eb916d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/f2d0c7bbdb8f385afc9ad766eb916d/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
Processed 5000000 records
Processed 6000000 records
Processed 7000000 records
Processed 8000000 records
Processed 9000000 records
Processed 10000000 records
Processed 11000000 records
Processed 12000000 records
Processed 13000000 records
Processed 14000000 records
Processed 15000000 records
Processed 16000000 records
Processed 17000000 records
Processed 18000000 records
Processed 19000000 records
Processed 20000000 records
Processed 21000000 records
Processed 22000000 records
Processed 23000000 records
Processed 24000000 records
Processed 25000000 records
Processed 26000000 records
Processed 27000000 records
Processed 28000000 records
Processed 29000000 records
Processed 30000000 records
Processed 31000000 records
Processed 32000000 records
Processed 33000000 records
Processed 34000000 records
Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
Processed 43000000 records
Processed 44000000 records
Processed 45000000 records
Processed 46000000 records
Processed 47000000 records
Processed 48000000 records
Processed 49000000 records
Processed 50000000 records
Processed 51000000 records
Processed 52000000 records
Processed 53000000 records
Processed 54000000 records
Processed 55000000 records
Processed 56000000 records
Processed 57000000 records
Processed 58000000 records
Processed 59000000 records
Processed 60000000 records
Processed 61000000 records
Processed 62000000 records
Processed 63000000 records
Processed 64000000 records
Processed 65000000 records
Processed 66000000 records
Processed 67000000 records
Processed 68000000 records
Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
Processed 75000000 records
Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
Processed 201000000 records
Processed 202000000 records
Processed 203000000 records
Processed 204000000 records
Processed 205000000 records
Processed 206000000 records
Processed 207000000 records
Processed 208000000 records
Processed 209000000 records
Processed 210000000 records
Processed 211000000 records
Processed 212000000 records
Processed 213000000 records
Processed 214000000 records
Processed 215000000 records
Processed 216000000 records
Processed 217000000 records
Processed 218000000 records
Processed 219000000 records
Processed 220000000 records
Processed 221000000 records
Processed 222000000 records
Processed 223000000 records
Processed 224000000 records
Processed 225000000 records
Processed 226000000 records
Processed 227000000 records
Processed 228000000 records
Processed 229000000 records
Processed 230000000 records
Processed 231000000 records
Processed 232000000 records
Processed 233000000 records
Processed 234000000 records
Processed 235000000 records
Processed 236000000 records
Processed 237000000 records
Processed 238000000 records
Processed 239000000 records
Processed 240000000 records
Processed 241000000 records
Processed 242000000 records
Processed 243000000 records
Processed 244000000 records
Processed 245000000 records
Processed 246000000 records
Processed 247000000 records
Processed 248000000 records
Processed 249000000 records
Processed 250000000 records
Processed 251000000 records
Processed 252000000 records
Processed 253000000 records
Processed 254000000 records
Processed 255000000 records
Processed 256000000 records
Processed 257000000 records
Processed 258000000 records
Processed 259000000 records
Processed 260000000 records
Processed 261000000 records
Processed 262000000 records
Processed 263000000 records
Processed 264000000 records
Processed 265000000 records
Processed 266000000 records
Processed 267000000 records
Processed 268000000 records
Processed 269000000 records
Processed 270000000 records
Processed 271000000 records
Processed 272000000 records
Processed 273000000 records
Processed 274000000 records
Processed 275000000 records
Processed 276000000 records
Processed 277000000 records
Processed 278000000 records
Processed 279000000 records
Processed 280000000 records
Processed 281000000 records
Processed 282000000 records
Processed 283000000 records
Processed 284000000 records
Processed 285000000 records
Processed 286000000 records
Processed 287000000 records
Processed 288000000 records
Processed 289000000 records
Processed 290000000 records
Processed 291000000 records
Processed 292000000 records
Processed 293000000 records
Processed 294000000 records
Processed 295000000 records
Processed 296000000 records
Processed 297000000 records
Processed 298000000 records
Processed 299000000 records
Processed 300000000 records
Processed 301000000 records
Processed 302000000 records
Processed 303000000 records
Processed 304000000 records
Processed 305000000 records
Processed 306000000 records
Processed 307000000 records
Processed 308000000 records
Processed 309000000 records
Processed 310000000 records
Processed 311000000 records
Processed 312000000 records
Processed 313000000 records
Processed 314000000 records
Processed 315000000 records
Processed 316000000 records
Processed 317000000 records
Processed 318000000 records
Processed 319000000 records
Processed 320000000 records
Processed 321000000 records
Processed 322000000 records
Processed 323000000 records
Processed 324000000 records
Processed 325000000 records
Processed 326000000 records
Processed 327000000 records
Processed 328000000 records
Processed 329000000 records
Processed 330000000 records
Processed 331000000 records
Processed 332000000 records
Processed 333000000 records
Processed 334000000 records
Processed 335000000 records
Processed 336000000 records
Processed 337000000 records
Processed 338000000 records
Processed 339000000 records
Processed 340000000 records
Processed 341000000 records
Processed 342000000 records
Processed 343000000 records
Processed 344000000 records
Processed 345000000 records
Processed 346000000 records
Processed 347000000 records
Processed 348000000 records
Processed 349000000 records
Processed 350000000 records
Processed 351000000 records
Processed 352000000 records
Processed 353000000 records
Processed 354000000 records
Processed 355000000 records
Processed 356000000 records
Processed 357000000 records
Processed 358000000 records
Processed 359000000 records
Processed 360000000 records
Processed 361000000 records
Processed 362000000 records
Processed 363000000 records
Processed 364000000 records
Processed 365000000 records
Processed 366000000 records
Processed 367000000 records
Processed 368000000 records
Processed 369000000 records
Processed 370000000 records
Processed 371000000 records
Processed 372000000 records
Processed 373000000 records
Processed 374000000 records
Processed 375000000 records
Processed 376000000 records
Processed 377000000 records
Processed 378000000 records
Processed 379000000 records
Processed 380000000 records
Processed 381000000 records
Processed 382000000 records
Processed 383000000 records
Processed 384000000 records
Processed 385000000 records
Processed 386000000 records
Processed 387000000 records
Processed 388000000 records
Processed 389000000 records
Processed 390000000 records
Processed 391000000 records
Processed 392000000 records
Processed 393000000 records
Processed 394000000 records
Processed 395000000 records
Processed 396000000 records
Processed 397000000 records
Processed 398000000 records
Processed 399000000 records
Processed 400000000 records
Processed 401000000 records
Processed 402000000 records
Processed 403000000 records
Processed 404000000 records
Processed 405000000 records
Processed 406000000 records
Processed 407000000 records
Processed 408000000 records
Processed 409000000 records
Processed 410000000 records
Processed 411000000 records
Processed 412000000 records
Processed 413000000 records
Processed 414000000 records
Processed 415000000 records
Processed 416000000 records
Processed 417000000 records
Processed 418000000 records
Processed 419000000 records
Processed 420000000 records
Processed 421000000 records
Processed 422000000 records
Processed 423000000 records
Processed 424000000 records
Processed 425000000 records
Processed 426000000 records
Processed 427000000 records
Processed 428000000 records
Processed 429000000 records
Processed 430000000 records
Processed 431000000 records
Processed 432000000 records
Processed 433000000 records
Processed 434000000 records
Processed 435000000 records
Processed 436000000 records
Processed 437000000 records
Processed 438000000 records
Processed 439000000 records
Processed 440000000 records
Processed 441000000 records
Processed 442000000 records
Processed 443000000 records
Processed 444000000 records
Processed 445000000 records
Processed 446000000 records
Processed 447000000 records
Processed 448000000 records
Processed 449000000 records
Processed 450000000 records
Processed 451000000 records
Processed 452000000 records
Processed 453000000 records
Processed 454000000 records
Processed 455000000 records
Processed 456000000 records
Processed 457000000 records
Processed 458000000 records
Processed 459000000 records
Processed 460000000 records
Processed 461000000 records
paired = 229119846
unpaired = 3639728
MERGED PAIRED END READS = 229119846
MATES PROCESSED = 461879420
TOTAL READS = 232759574
DISTINCT READS = 4.44875e+07
DISTINCT COUNTS = 800
MAX COUNT = 646944
COUNTS OF 1 = 1.01145e+07
MAX TERMS = 100
OBSERVED COUNTS (646945)
1 10114511
2 6331396
3 5239443
4 4417880
5 3654486
6 2967518
7 2378968
8 1886326
9 1485494
10 1165172
11 911904
12 716676
13 562979
14 444992
15 355267
16 283750
17 229029
18 185771
19 153663
20 127092
21 106452
22 90019
23 76365
24 65073
25 56148
26 49152
27 42726
28 37816
29 32857
30 29323
31 26150
32 22914
33 20616
34 18393
35 16185
36 14808
37 13180
38 11812
39 10516
40 9467
41 8569
42 7908
43 7146
44 6622
45 5942
46 5264
47 4930
48 4447
49 4110
50 3798
51 3392
52 3116
53 2950
54 2757
55 2631
56 2322
57 2217
58 2029
59 1945
60 1814
61 1740
62 1586
63 1433
64 1370
65 1325
66 1252
67 1257
68 1187
69 1080
70 1032
71 983
72 881
73 876
74 836
75 800
76 752
77 676
78 665
79 634
80 613
81 649
82 638
83 568
84 526
85 499
86 500
87 454
88 471
89 443
90 386
91 420
92 387
93 378
94 355
95 317
96 323
97 306
98 293
99 284
100 313
101 259
102 271
103 258
104 267
105 235
106 232
107 232
108 203
109 192
110 193
111 179
112 171
113 175
114 195
115 176
116 175
117 177
118 156
119 163
120 158
121 148
122 123
123 133
124 142
125 119
126 134
127 140
128 124
129 115
130 118
131 119
132 98
133 112
134 91
135 99
136 93
137 94
138 81
139 82
140 89
141 70
142 90
143 76
144 81
145 85
146 61
147 55
148 69
149 66
150 68
151 68
152 74
153 67
154 72
155 54
156 65
157 65
158 48
159 67
160 58
161 57
162 47
163 61
164 58
165 50
166 59
167 40
168 47
169 39
170 60
171 48
172 31
173 47
174 46
175 46
176 52
177 41
178 32
179 44
180 38
181 28
182 29
183 31
184 34
185 39
186 29
187 28
188 38
189 22
190 38
191 25
192 42
193 30
194 30
195 38
196 16
197 32
198 28
199 33
200 28
201 28
202 31
203 27
204 35
205 23
206 27
207 29
208 20
209 27
210 23
211 20
212 22
213 15
214 24
215 28
216 29
217 23
218 19
219 22
220 24
221 18
222 16
223 21
224 18
225 26
226 19
227 12
228 19
229 18
230 21
231 19
232 14
233 17
234 16
235 20
236 15
237 9
238 12
239 13
240 23
241 17
242 10
243 18
244 19
245 21
246 17
247 8
248 18
249 14
250 15
251 15
252 18
253 15
254 6
255 9
256 12
257 17
258 15
259 9
260 6
261 9
262 11
263 12
264 11
265 17
266 9
267 10
268 15
269 7
270 13
271 11
272 12
273 5
274 6
275 9
276 10
277 8
278 14
279 5
280 11
281 14
282 13
283 9
284 8
285 5
286 7
287 8
288 5
289 11
290 7
291 9
292 11
293 10
294 5
295 8
296 6
297 7
298 7
299 7
300 14
301 6
302 4
303 9
304 8
305 10
306 8
307 12
308 10
309 3
310 9
311 7
312 3
313 4
314 12
315 9
316 8
317 7
318 7
319 9
320 7
321 2
322 4
323 8
324 3
325 5
326 4
327 5
328 4
329 9
330 7
331 10
332 8
333 4
334 5
335 5
336 2
337 4
338 6
339 6
340 2
341 5
342 2
343 3
344 5
345 7
346 6
347 4
348 3
349 8
350 4
351 2
352 4
353 1
354 3
355 3
356 7
357 5
358 2
359 2
360 4
361 3
362 2
363 4
364 3
365 5
366 2
367 5
368 6
369 6
370 2
371 3
372 4
373 2
374 4
375 4
376 6
377 2
378 4
379 4
380 4
381 5
382 5
383 7
384 4
385 1
386 2
388 4
389 4
390 3
391 4
392 3
394 3
395 7
396 1
397 1
398 5
399 4
400 3
401 3
402 3
403 6
404 1
405 1
406 8
407 1
408 3
410 2
411 3
412 1
413 2
414 2
415 1
416 2
417 2
418 2
419 3
420 5
421 4
422 3
423 3
424 6
425 2
426 2
427 1
428 3
429 3
430 1
431 3
432 5
433 3
434 1
436 3
437 1
438 3
439 2
440 2
441 1
442 3
443 1
444 4
445 1
446 1
447 1
448 2
449 4
450 3
451 2
452 1
453 2
455 1
456 1
457 5
458 1
459 2
460 2
461 1
462 1
463 1
464 1
465 4
466 1
467 2
468 6
469 1
470 2
471 5
472 2
473 2
474 1
475 3
476 1
479 1
480 2
481 1
482 4
483 1
484 1
485 1
486 2
488 2
489 1
490 2
491 1
494 1
495 1
496 2
497 3
498 1
499 3
500 1
501 4
503 1
504 3
505 2
506 1
507 1
508 2
509 1
511 3
513 2
515 1
516 1
518 3
519 1
520 1
521 1
522 4
523 1
525 1
526 2
527 1
528 1
529 4
530 2
531 2
532 2
534 1
535 1
536 2
537 1
539 3
540 2
541 2
544 1
545 1
546 1
547 1
548 1
549 2
550 1
551 2
552 2
553 1
554 2
555 3
556 1
558 1
559 2
560 2
563 2
564 2
565 1
566 2
567 1
569 1
570 3
571 1
572 1
575 2
576 2
578 2
581 1
582 2
583 1
585 4
586 2
587 1
588 1
593 1
595 3
597 2
598 1
599 3
601 1
602 1
603 1
604 4
605 1
606 1
608 3
609 1
610 1
611 1
612 1
613 4
617 1
618 2
620 2
621 3
622 2
623 1
626 2
627 1
629 2
630 1
633 1
634 1
635 1
637 2
639 2
640 1
642 1
643 1
647 1
648 1
650 1
651 1
653 3
654 1
655 2
658 1
659 2
660 2
661 1
663 1
665 1
666 1
667 3
668 1
670 1
671 1
674 1
677 1
679 1
680 1
681 3
683 1
685 2
686 2
687 1
689 1
690 1
693 1
695 1
700 1
701 1
702 1
704 1
711 2
712 1
714 3
715 1
716 2
717 1
718 2
725 1
726 2
727 1
730 1
731 1
734 1
736 1
738 1
742 1
745 1
746 1
747 1
749 1
755 1
758 1
759 2
760 2
765 1
769 1
772 2
775 1
777 2
780 1
781 1
784 1
786 2
787 1
794 1
796 2
797 1
799 1
801 1
802 1
805 1
811 2
817 1
819 1
820 1
826 1
827 1
830 1
837 1
839 3
840 1
841 1
843 1
847 1
848 2
855 2
856 1
859 1
861 1
868 1
870 2
871 1
874 1
875 1
878 1
886 1
896 1
898 2
901 1
905 1
909 1
912 1
915 1
922 2
928 2
936 1
938 1
943 1
946 1
948 1
955 1
957 1
958 1
959 1
964 1
971 1
977 1
978 1
981 1
987 1
988 1
997 1
1002 1
1008 2
1012 1
1016 1
1018 1
1019 1
1020 1
1027 2
1029 1
1031 1
1038 1
1040 1
1053 2
1060 1
1061 2
1064 2
1067 1
1069 2
1079 1
1085 1
1099 1
1102 1
1104 1
1108 1
1121 1
1124 1
1125 1
1128 1
1135 1
1144 1
1156 1
1162 1
1168 1
1190 1
1204 2
1228 1
1237 1
1247 1
1338 1
1359 1
1376 2
1387 1
1388 1
1408 2
1437 1
1444 1
1448 1
1461 1
1468 1
1496 1
1507 1
1516 1
1535 1
1553 1
1562 1
1565 1
1581 1
1594 1
1601 1
1605 1
1658 1
1660 1
1753 1
1769 1
1774 1
1891 1
1893 1
2023 1
2046 1
2086 1
2227 1
2463 1
2540 1
3192 1
3920 1
4322 1
6470 1
7122 1
20877 1
646944 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..._._..........__._._..............__.....__..........._.._.._......_..
..._.........._...._...__.....__................_.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]