Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/da7e7132efd959e69f6a7743d85320/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/ec6e399713941e4496195ac413c900/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/ec6e399713941e4496195ac413c900/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/53b66777831821a89cdc7aee8d72c9/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory