File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/978706f48a02408c646bfc25a948b3/.command.log
Size
1.7 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-12b72b-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/978706f48a02408c646bfc25a948b3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/978706f48a02408c646bfc25a948b3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/1616aeba539d80508ae86204ef1369/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/3bffc29ef234bd1a322f9f5beece40/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2--AC240565.1
starfusion
TLK2P1--AC110079.1
starfusion
TVP23C--CDRT4
arriba

  0%|          | 0/3 [00:00<?, ?it/s]
Processing TLK2--AC240565.1:   0%|          | 0/3 [00:00<?, ?it/s]
Processing TLK2--AC240565.1:  33%|███▎      | 1/3 [00:00<00:00,  9.25it/s]
Processing TLK2P1--AC110079.1:  33%|███▎      | 1/3 [00:00<00:00,  9.25it/s]
Processing TLK2P1--AC110079.1:  67%|██████▋   | 2/3 [00:00<00:00,  9.48it/s]
Processing TVP23C--CDRT4:  67%|██████▋   | 2/3 [00:00<00:00,  9.48it/s]     
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.54it/s]
Processing TVP23C--CDRT4: 100%|██████████| 3/3 [00:00<00:00,  9.50it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory