Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx121241M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
09:40:07.277 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 09:40:07 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 09:40:07 GMT 2026] Executing as ?@nf-b181ccc52351481089ad85a333cc6b5a-11f5a-nh9xb on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 09:40:07 MarkDuplicates Start of doWork freeMemory: 105132952; totalMemory: 134217728; maxMemory: 127137742848
INFO 2026-06-08 09:40:07 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 09:40:07 MarkDuplicates Will retain up to 460643995 data points before spilling to disk.
INFO 2026-06-08 09:40:12 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,310,974
INFO 2026-06-08 09:40:12 MarkDuplicates Tracking 2005 as yet unmatched pairs. 146 records in RAM.
INFO 2026-06-08 09:40:15 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:1,804,499
INFO 2026-06-08 09:40:15 MarkDuplicates Tracking 5318 as yet unmatched pairs. 1422 records in RAM.
INFO 2026-06-08 09:40:17 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:7,970,959
INFO 2026-06-08 09:40:17 MarkDuplicates Tracking 6128 as yet unmatched pairs. 273 records in RAM.
INFO 2026-06-08 09:40:19 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 2s. Last read position: chr1:11,144,694
INFO 2026-06-08 09:40:19 MarkDuplicates Tracking 7664 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 09:40:22 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:15,935,341
INFO 2026-06-08 09:40:22 MarkDuplicates Tracking 9532 as yet unmatched pairs. 478 records in RAM.
INFO 2026-06-08 09:40:24 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:19,151,707
INFO 2026-06-08 09:40:24 MarkDuplicates Tracking 10850 as yet unmatched pairs. 240 records in RAM.
INFO 2026-06-08 09:40:26 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:21,839,072
INFO 2026-06-08 09:40:26 MarkDuplicates Tracking 12815 as yet unmatched pairs. 521 records in RAM.
INFO 2026-06-08 09:40:29 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:23,310,777
INFO 2026-06-08 09:40:29 MarkDuplicates Tracking 14149 as yet unmatched pairs. 248 records in RAM.
INFO 2026-06-08 09:40:31 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 2s. Last read position: chr1:26,546,873
INFO 2026-06-08 09:40:31 MarkDuplicates Tracking 15841 as yet unmatched pairs. 369 records in RAM.
INFO 2026-06-08 09:40:33 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 2s. Last read position: chr1:28,743,707
INFO 2026-06-08 09:40:33 MarkDuplicates Tracking 17574 as yet unmatched pairs. 486 records in RAM.
INFO 2026-06-08 09:40:35 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 2s. Last read position: chr1:32,226,505
INFO 2026-06-08 09:40:35 MarkDuplicates Tracking 19372 as yet unmatched pairs. 645 records in RAM.
INFO 2026-06-08 09:40:38 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:35,389,952
INFO 2026-06-08 09:40:38 MarkDuplicates Tracking 20662 as yet unmatched pairs. 229 records in RAM.
INFO 2026-06-08 09:40:40 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:39,318,588
INFO 2026-06-08 09:40:40 MarkDuplicates Tracking 23011 as yet unmatched pairs. 880 records in RAM.
INFO 2026-06-08 09:40:42 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 2s. Last read position: chr1:41,581,236
INFO 2026-06-08 09:40:42 MarkDuplicates Tracking 23882 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 09:40:45 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:43,621,114
INFO 2026-06-08 09:40:45 MarkDuplicates Tracking 26896 as yet unmatched pairs. 1580 records in RAM.
INFO 2026-06-08 09:40:47 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 2s. Last read position: chr1:46,194,363
INFO 2026-06-08 09:40:47 MarkDuplicates Tracking 27262 as yet unmatched pairs. 295 records in RAM.
INFO 2026-06-08 09:40:50 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 2s. Last read position: chr1:54,043,424
INFO 2026-06-08 09:40:50 MarkDuplicates Tracking 29857 as yet unmatched pairs. 1221 records in RAM.
INFO 2026-06-08 09:40:52 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:64,867,180
INFO 2026-06-08 09:40:52 MarkDuplicates Tracking 30517 as yet unmatched pairs. 383 records in RAM.
INFO 2026-06-08 09:40:54 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:87,339,555
INFO 2026-06-08 09:40:54 MarkDuplicates Tracking 31854 as yet unmatched pairs. 231 records in RAM.
INFO 2026-06-08 09:40:56 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:102,962,738
INFO 2026-06-08 09:40:56 MarkDuplicates Tracking 33902 as yet unmatched pairs. 869 records in RAM.
INFO 2026-06-08 09:40:58 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 2s. Last read position: chr1:110,340,009
INFO 2026-06-08 09:40:58 MarkDuplicates Tracking 35185 as yet unmatched pairs. 582 records in RAM.
INFO 2026-06-08 09:41:00 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:114,464,338
INFO 2026-06-08 09:41:00 MarkDuplicates Tracking 36813 as yet unmatched pairs. 724 records in RAM.
INFO 2026-06-08 09:41:02 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:117,402,326
INFO 2026-06-08 09:41:02 MarkDuplicates Tracking 38551 as yet unmatched pairs. 333 records in RAM.
INFO 2026-06-08 09:41:05 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 2s. Last read position: chr1:120,439,613
INFO 2026-06-08 09:41:05 MarkDuplicates Tracking 39830 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 09:41:07 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 2s. Last read position: chr1:145,393,883
INFO 2026-06-08 09:41:07 MarkDuplicates Tracking 40721 as yet unmatched pairs. 292 records in RAM.
INFO 2026-06-08 09:41:09 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:146,139,964
INFO 2026-06-08 09:41:09 MarkDuplicates Tracking 42611 as yet unmatched pairs. 1318 records in RAM.
INFO 2026-06-08 09:41:10 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:148,110,495
INFO 2026-06-08 09:41:10 MarkDuplicates Tracking 42723 as yet unmatched pairs. 494 records in RAM.
INFO 2026-06-08 09:41:12 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:148,586,152
INFO 2026-06-08 09:41:12 MarkDuplicates Tracking 43434 as yet unmatched pairs. 833 records in RAM.
INFO 2026-06-08 09:41:14 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:149,455,539
INFO 2026-06-08 09:41:14 MarkDuplicates Tracking 44781 as yet unmatched pairs. 1419 records in RAM.
INFO 2026-06-08 09:41:16 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:149,887,155
INFO 2026-06-08 09:41:16 MarkDuplicates Tracking 45115 as yet unmatched pairs. 1035 records in RAM.
INFO 2026-06-08 09:41:18 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:150,579,310
INFO 2026-06-08 09:41:18 MarkDuplicates Tracking 47234 as yet unmatched pairs. 1565 records in RAM.
INFO 2026-06-08 09:41:20 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 2s. Last read position: chr1:151,103,560
INFO 2026-06-08 09:41:20 MarkDuplicates Tracking 47351 as yet unmatched pairs. 211 records in RAM.
INFO 2026-06-08 09:41:22 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 2s. Last read position: chr1:151,440,974
INFO 2026-06-08 09:41:22 MarkDuplicates Tracking 49705 as yet unmatched pairs. 902 records in RAM.
INFO 2026-06-08 09:41:24 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 2s. Last read position: chr1:153,817,522
INFO 2026-06-08 09:41:24 MarkDuplicates Tracking 50932 as yet unmatched pairs. 516 records in RAM.
INFO 2026-06-08 09:41:26 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:154,172,094
INFO 2026-06-08 09:41:26 MarkDuplicates Tracking 56209 as yet unmatched pairs. 4266 records in RAM.
INFO 2026-06-08 09:41:29 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 2s. Last read position: chr1:154,601,361
INFO 2026-06-08 09:41:29 MarkDuplicates Tracking 55056 as yet unmatched pairs. 1689 records in RAM.
INFO 2026-06-08 09:41:31 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 2s. Last read position: chr1:155,057,348
INFO 2026-06-08 09:41:31 MarkDuplicates Tracking 59162 as yet unmatched pairs. 4190 records in RAM.
INFO 2026-06-08 09:41:33 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 2s. Last read position: chr1:155,190,768
INFO 2026-06-08 09:41:33 MarkDuplicates Tracking 56840 as yet unmatched pairs. 366 records in RAM.
INFO 2026-06-08 09:41:35 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:155,481,798
INFO 2026-06-08 09:41:35 MarkDuplicates Tracking 58602 as yet unmatched pairs. 712 records in RAM.
INFO 2026-06-08 09:41:37 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 2s. Last read position: chr1:156,050,479
INFO 2026-06-08 09:41:37 MarkDuplicates Tracking 59658 as yet unmatched pairs. 365 records in RAM.
INFO 2026-06-08 09:41:39 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:156,246,215
INFO 2026-06-08 09:41:39 MarkDuplicates Tracking 62711 as yet unmatched pairs. 1533 records in RAM.
INFO 2026-06-08 09:41:41 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 2s. Last read position: chr1:156,700,571
INFO 2026-06-08 09:41:41 MarkDuplicates Tracking 66519 as yet unmatched pairs. 3698 records in RAM.
INFO 2026-06-08 09:41:43 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:160,211,613
INFO 2026-06-08 09:41:43 MarkDuplicates Tracking 65361 as yet unmatched pairs. 901 records in RAM.
INFO 2026-06-08 09:41:45 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:161,049,322
INFO 2026-06-08 09:41:45 MarkDuplicates Tracking 66477 as yet unmatched pairs. 399 records in RAM.
INFO 2026-06-08 09:41:47 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:161,802,177
INFO 2026-06-08 09:41:47 MarkDuplicates Tracking 68532 as yet unmatched pairs. 827 records in RAM.
INFO 2026-06-08 09:41:49 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:169,106,747
INFO 2026-06-08 09:41:49 MarkDuplicates Tracking 71724 as yet unmatched pairs. 2428 records in RAM.
INFO 2026-06-08 09:41:51 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:171,566,653
INFO 2026-06-08 09:41:51 MarkDuplicates Tracking 71371 as yet unmatched pairs. 648 records in RAM.
INFO 2026-06-08 09:41:53 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:179,107,777
INFO 2026-06-08 09:41:53 MarkDuplicates Tracking 72457 as yet unmatched pairs. 263 records in RAM.
INFO 2026-06-08 09:41:55 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 2s. Last read position: chr1:183,590,164
INFO 2026-06-08 09:41:55 MarkDuplicates Tracking 73897 as yet unmatched pairs. 203 records in RAM.
INFO 2026-06-08 09:41:57 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr1:186,346,247
INFO 2026-06-08 09:41:57 MarkDuplicates Tracking 77003 as yet unmatched pairs. 1998 records in RAM.
INFO 2026-06-08 09:41:59 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:200,911,696
INFO 2026-06-08 09:41:59 MarkDuplicates Tracking 76697 as yet unmatched pairs. 268 records in RAM.
INFO 2026-06-08 09:42:02 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 2s. Last read position: chr1:202,896,885
INFO 2026-06-08 09:42:02 MarkDuplicates Tracking 78267 as yet unmatched pairs. 227 records in RAM.
INFO 2026-06-08 09:42:04 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr1:204,410,841
INFO 2026-06-08 09:42:04 MarkDuplicates Tracking 79867 as yet unmatched pairs. 395 records in RAM.
INFO 2026-06-08 09:42:06 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:207,757,145
INFO 2026-06-08 09:42:06 MarkDuplicates Tracking 83261 as yet unmatched pairs. 2212 records in RAM.
INFO 2026-06-08 09:42:08 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:215,567,720
INFO 2026-06-08 09:42:08 MarkDuplicates Tracking 82855 as yet unmatched pairs. 273 records in RAM.
INFO 2026-06-08 09:42:11 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 2s. Last read position: chr1:223,553,865
INFO 2026-06-08 09:42:11 MarkDuplicates Tracking 85524 as yet unmatched pairs. 1561 records in RAM.
INFO 2026-06-08 09:42:12 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr1:225,517,296
INFO 2026-06-08 09:42:12 MarkDuplicates Tracking 86079 as yet unmatched pairs. 584 records in RAM.
INFO 2026-06-08 09:42:14 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr1:227,029,158
INFO 2026-06-08 09:42:14 MarkDuplicates Tracking 87309 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 09:42:17 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr1:228,401,173
INFO 2026-06-08 09:42:17 MarkDuplicates Tracking 89161 as yet unmatched pairs. 347 records in RAM.
INFO 2026-06-08 09:42:19 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr1:234,430,051
INFO 2026-06-08 09:42:19 MarkDuplicates Tracking 91348 as yet unmatched pairs. 787 records in RAM.
INFO 2026-06-08 09:42:21 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr1:236,795,727
INFO 2026-06-08 09:42:21 MarkDuplicates Tracking 92610 as yet unmatched pairs. 366 records in RAM.
INFO 2026-06-08 09:42:23 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr1:244,864,157
INFO 2026-06-08 09:42:23 MarkDuplicates Tracking 97244 as yet unmatched pairs. 3543 records in RAM.
INFO 2026-06-08 09:42:26 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 3s. Last read position: chr2:1,665,043
INFO 2026-06-08 09:42:26 MarkDuplicates Tracking 95632 as yet unmatched pairs. 93778 records in RAM.
INFO 2026-06-08 09:42:28 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr2:10,793,134
INFO 2026-06-08 09:42:28 MarkDuplicates Tracking 97482 as yet unmatched pairs. 95609 records in RAM.
INFO 2026-06-08 09:42:30 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 2s. Last read position: chr2:20,203,881
INFO 2026-06-08 09:42:30 MarkDuplicates Tracking 103467 as yet unmatched pairs. 101575 records in RAM.
INFO 2026-06-08 09:42:32 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 2s. Last read position: chr2:24,726,589
INFO 2026-06-08 09:42:32 MarkDuplicates Tracking 100746 as yet unmatched pairs. 98825 records in RAM.
INFO 2026-06-08 09:42:35 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 2s. Last read position: chr2:27,039,777
INFO 2026-06-08 09:42:35 MarkDuplicates Tracking 102549 as yet unmatched pairs. 100622 records in RAM.
INFO 2026-06-08 09:42:37 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 2s. Last read position: chr2:27,439,792
INFO 2026-06-08 09:42:37 MarkDuplicates Tracking 103987 as yet unmatched pairs. 102039 records in RAM.
INFO 2026-06-08 09:42:39 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 2s. Last read position: chr2:31,943,312
INFO 2026-06-08 09:42:39 MarkDuplicates Tracking 105736 as yet unmatched pairs. 103770 records in RAM.
INFO 2026-06-08 09:42:41 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,260
INFO 2026-06-08 09:42:41 MarkDuplicates Tracking 143954 as yet unmatched pairs. 102030 records in RAM.
INFO 2026-06-08 09:42:44 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:42:44 MarkDuplicates Tracking 736970 as yet unmatched pairs. 70955 records in RAM.
INFO 2026-06-08 09:42:45 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 09:42:45 MarkDuplicates Tracking 830147 as yet unmatched pairs. 66301 records in RAM.
INFO 2026-06-08 09:42:48 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:37,138,292
INFO 2026-06-08 09:42:48 MarkDuplicates Tracking 879187 as yet unmatched pairs. 63630 records in RAM.
INFO 2026-06-08 09:42:51 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr2:43,225,155
INFO 2026-06-08 09:42:51 MarkDuplicates Tracking 877294 as yet unmatched pairs. 61718 records in RAM.
INFO 2026-06-08 09:42:53 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:46,759,226
INFO 2026-06-08 09:42:53 MarkDuplicates Tracking 875690 as yet unmatched pairs. 60098 records in RAM.
INFO 2026-06-08 09:42:55 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:54,612,217
INFO 2026-06-08 09:42:55 MarkDuplicates Tracking 874706 as yet unmatched pairs. 59088 records in RAM.
INFO 2026-06-08 09:42:58 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 2s. Last read position: chr2:61,188,692
INFO 2026-06-08 09:42:58 MarkDuplicates Tracking 872694 as yet unmatched pairs. 57057 records in RAM.
INFO 2026-06-08 09:43:00 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:65,239,874
INFO 2026-06-08 09:43:00 MarkDuplicates Tracking 872910 as yet unmatched pairs. 57261 records in RAM.
INFO 2026-06-08 09:43:02 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:71,349,353
INFO 2026-06-08 09:43:02 MarkDuplicates Tracking 870202 as yet unmatched pairs. 54535 records in RAM.
INFO 2026-06-08 09:43:04 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:74,369,152
INFO 2026-06-08 09:43:04 MarkDuplicates Tracking 868567 as yet unmatched pairs. 52886 records in RAM.
INFO 2026-06-08 09:43:06 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:85,326,527
INFO 2026-06-08 09:43:06 MarkDuplicates Tracking 867462 as yet unmatched pairs. 51765 records in RAM.
INFO 2026-06-08 09:43:08 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 2s. Last read position: chr2:86,604,593
INFO 2026-06-08 09:43:08 MarkDuplicates Tracking 865351 as yet unmatched pairs. 49621 records in RAM.
INFO 2026-06-08 09:43:10 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr2:95,279,117
INFO 2026-06-08 09:43:10 MarkDuplicates Tracking 865671 as yet unmatched pairs. 49926 records in RAM.
INFO 2026-06-08 09:43:12 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 2s. Last read position: chr2:96,848,297
INFO 2026-06-08 09:43:12 MarkDuplicates Tracking 862798 as yet unmatched pairs. 47037 records in RAM.
INFO 2026-06-08 09:43:15 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:100,571,670
INFO 2026-06-08 09:43:15 MarkDuplicates Tracking 861050 as yet unmatched pairs. 45270 records in RAM.
INFO 2026-06-08 09:43:17 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr2:108,452,210
INFO 2026-06-08 09:43:17 MarkDuplicates Tracking 860160 as yet unmatched pairs. 44374 records in RAM.
INFO 2026-06-08 09:43:19 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr2:108,772,896
INFO 2026-06-08 09:43:19 MarkDuplicates Tracking 859671 as yet unmatched pairs. 43877 records in RAM.
INFO 2026-06-08 09:43:21 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 1s. Last read position: chr2:110,546,844
INFO 2026-06-08 09:43:21 MarkDuplicates Tracking 858977 as yet unmatched pairs. 43177 records in RAM.
INFO 2026-06-08 09:43:23 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr2:113,184,984
INFO 2026-06-08 09:43:23 MarkDuplicates Tracking 857593 as yet unmatched pairs. 41787 records in RAM.
INFO 2026-06-08 09:43:25 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr2:127,651,667
INFO 2026-06-08 09:43:25 MarkDuplicates Tracking 855896 as yet unmatched pairs. 40045 records in RAM.
INFO 2026-06-08 09:43:27 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 2s. Last read position: chr2:130,656,864
INFO 2026-06-08 09:43:27 MarkDuplicates Tracking 854307 as yet unmatched pairs. 38431 records in RAM.
INFO 2026-06-08 09:43:29 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:134,338,349
INFO 2026-06-08 09:43:29 MarkDuplicates Tracking 852996 as yet unmatched pairs. 37082 records in RAM.
INFO 2026-06-08 09:43:31 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr2:142,877,687
INFO 2026-06-08 09:43:31 MarkDuplicates Tracking 851554 as yet unmatched pairs. 35507 records in RAM.
INFO 2026-06-08 09:43:33 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 2s. Last read position: chr2:159,170,692
INFO 2026-06-08 09:43:33 MarkDuplicates Tracking 850940 as yet unmatched pairs. 34848 records in RAM.
INFO 2026-06-08 09:43:35 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:169,812,482
INFO 2026-06-08 09:43:35 MarkDuplicates Tracking 849371 as yet unmatched pairs. 33255 records in RAM.
INFO 2026-06-08 09:43:37 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr2:177,216,864
INFO 2026-06-08 09:43:37 MarkDuplicates Tracking 847428 as yet unmatched pairs. 31292 records in RAM.
INFO 2026-06-08 09:43:40 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:182,758,847
INFO 2026-06-08 09:43:40 MarkDuplicates Tracking 846532 as yet unmatched pairs. 30356 records in RAM.
INFO 2026-06-08 09:43:42 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 2s. Last read position: chr2:189,043,212
INFO 2026-06-08 09:43:42 MarkDuplicates Tracking 844866 as yet unmatched pairs. 28670 records in RAM.
INFO 2026-06-08 09:43:44 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr2:197,408,408
INFO 2026-06-08 09:43:44 MarkDuplicates Tracking 844266 as yet unmatched pairs. 28055 records in RAM.
INFO 2026-06-08 09:43:47 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 2s. Last read position: chr2:203,391,075
INFO 2026-06-08 09:43:47 MarkDuplicates Tracking 841679 as yet unmatched pairs. 25432 records in RAM.
INFO 2026-06-08 09:43:49 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 2s. Last read position: chr2:214,942,929
INFO 2026-06-08 09:43:49 MarkDuplicates Tracking 840632 as yet unmatched pairs. 24345 records in RAM.
INFO 2026-06-08 09:43:51 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr2:215,365,564
INFO 2026-06-08 09:43:51 MarkDuplicates Tracking 852670 as yet unmatched pairs. 36374 records in RAM.
INFO 2026-06-08 09:43:54 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,200
INFO 2026-06-08 09:43:54 MarkDuplicates Tracking 858825 as yet unmatched pairs. 42515 records in RAM.
INFO 2026-06-08 09:43:56 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:215,376,541
INFO 2026-06-08 09:43:56 MarkDuplicates Tracking 855620 as yet unmatched pairs. 39307 records in RAM.
INFO 2026-06-08 09:43:58 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr2:215,383,367
INFO 2026-06-08 09:43:58 MarkDuplicates Tracking 845637 as yet unmatched pairs. 29317 records in RAM.
INFO 2026-06-08 09:44:00 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr2:215,391,801
INFO 2026-06-08 09:44:00 MarkDuplicates Tracking 843463 as yet unmatched pairs. 27142 records in RAM.
INFO 2026-06-08 09:44:02 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:215,406,245
INFO 2026-06-08 09:44:02 MarkDuplicates Tracking 845013 as yet unmatched pairs. 28687 records in RAM.
INFO 2026-06-08 09:44:04 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,714
INFO 2026-06-08 09:44:04 MarkDuplicates Tracking 838267 as yet unmatched pairs. 21928 records in RAM.
INFO 2026-06-08 09:44:06 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 1s. Last read position: chr2:215,423,475
INFO 2026-06-08 09:44:06 MarkDuplicates Tracking 842683 as yet unmatched pairs. 26342 records in RAM.
INFO 2026-06-08 09:44:09 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 2s. Last read position: chr2:215,433,337
INFO 2026-06-08 09:44:09 MarkDuplicates Tracking 841934 as yet unmatched pairs. 25572 records in RAM.
INFO 2026-06-08 09:44:11 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr2:217,812,373
INFO 2026-06-08 09:44:11 MarkDuplicates Tracking 827358 as yet unmatched pairs. 10984 records in RAM.
INFO 2026-06-08 09:44:13 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr2:219,381,425
INFO 2026-06-08 09:44:13 MarkDuplicates Tracking 825746 as yet unmatched pairs. 9357 records in RAM.
INFO 2026-06-08 09:44:16 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr2:229,792,034
INFO 2026-06-08 09:44:16 MarkDuplicates Tracking 823954 as yet unmatched pairs. 7529 records in RAM.
INFO 2026-06-08 09:44:18 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr2:233,251,808
INFO 2026-06-08 09:44:18 MarkDuplicates Tracking 822652 as yet unmatched pairs. 6207 records in RAM.
INFO 2026-06-08 09:44:20 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr2:237,374,699
INFO 2026-06-08 09:44:20 MarkDuplicates Tracking 821416 as yet unmatched pairs. 4950 records in RAM.
INFO 2026-06-08 09:44:22 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr2:239,990,135
INFO 2026-06-08 09:44:22 MarkDuplicates Tracking 819552 as yet unmatched pairs. 3064 records in RAM.
INFO 2026-06-08 09:44:24 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr2:241,316,472
INFO 2026-06-08 09:44:24 MarkDuplicates Tracking 818073 as yet unmatched pairs. 1543 records in RAM.
INFO 2026-06-08 09:44:27 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 2s. Last read position: chr3:9,678,025
INFO 2026-06-08 09:44:27 MarkDuplicates Tracking 815998 as yet unmatched pairs. 45937 records in RAM.
INFO 2026-06-08 09:44:29 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:12,590,948
INFO 2026-06-08 09:44:29 MarkDuplicates Tracking 814845 as yet unmatched pairs. 44751 records in RAM.
INFO 2026-06-08 09:44:31 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr3:16,270,978
INFO 2026-06-08 09:44:31 MarkDuplicates Tracking 812556 as yet unmatched pairs. 42446 records in RAM.
INFO 2026-06-08 09:44:33 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr3:33,072,689
INFO 2026-06-08 09:44:33 MarkDuplicates Tracking 811020 as yet unmatched pairs. 40884 records in RAM.
INFO 2026-06-08 09:44:35 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr3:39,408,625
INFO 2026-06-08 09:44:35 MarkDuplicates Tracking 811898 as yet unmatched pairs. 41751 records in RAM.
INFO 2026-06-08 09:44:38 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr3:43,348,125
INFO 2026-06-08 09:44:38 MarkDuplicates Tracking 808156 as yet unmatched pairs. 37992 records in RAM.
INFO 2026-06-08 09:44:40 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 2s. Last read position: chr3:47,008,561
INFO 2026-06-08 09:44:40 MarkDuplicates Tracking 807178 as yet unmatched pairs. 36987 records in RAM.
INFO 2026-06-08 09:44:42 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:47,918,724
INFO 2026-06-08 09:44:42 MarkDuplicates Tracking 806404 as yet unmatched pairs. 36200 records in RAM.
INFO 2026-06-08 09:44:45 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 2s. Last read position: chr3:48,694,926
INFO 2026-06-08 09:44:45 MarkDuplicates Tracking 805084 as yet unmatched pairs. 34855 records in RAM.
INFO 2026-06-08 09:44:47 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr3:49,122,710
INFO 2026-06-08 09:44:47 MarkDuplicates Tracking 802135 as yet unmatched pairs. 31890 records in RAM.
INFO 2026-06-08 09:44:49 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr3:49,685,615
INFO 2026-06-08 09:44:49 MarkDuplicates Tracking 799777 as yet unmatched pairs. 29525 records in RAM.
INFO 2026-06-08 09:44:51 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr3:50,607,982
INFO 2026-06-08 09:44:51 MarkDuplicates Tracking 798153 as yet unmatched pairs. 27888 records in RAM.
INFO 2026-06-08 09:44:53 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr3:52,522,041
INFO 2026-06-08 09:44:53 MarkDuplicates Tracking 796577 as yet unmatched pairs. 26293 records in RAM.
INFO 2026-06-08 09:44:56 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr3:57,577,361
INFO 2026-06-08 09:44:56 MarkDuplicates Tracking 795292 as yet unmatched pairs. 24985 records in RAM.
INFO 2026-06-08 09:44:57 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:69,047,359
INFO 2026-06-08 09:44:57 MarkDuplicates Tracking 793537 as yet unmatched pairs. 23195 records in RAM.
INFO 2026-06-08 09:45:00 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr3:100,386,974
INFO 2026-06-08 09:45:00 MarkDuplicates Tracking 791916 as yet unmatched pairs. 21548 records in RAM.
INFO 2026-06-08 09:45:02 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr3:107,791,289
INFO 2026-06-08 09:45:02 MarkDuplicates Tracking 790341 as yet unmatched pairs. 19965 records in RAM.
INFO 2026-06-08 09:45:04 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 1s. Last read position: chr3:120,404,879
INFO 2026-06-08 09:45:04 MarkDuplicates Tracking 789045 as yet unmatched pairs. 18616 records in RAM.
INFO 2026-06-08 09:45:07 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr3:123,931,501
INFO 2026-06-08 09:45:07 MarkDuplicates Tracking 788186 as yet unmatched pairs. 17733 records in RAM.
INFO 2026-06-08 09:45:09 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr3:128,067,502
INFO 2026-06-08 09:45:09 MarkDuplicates Tracking 788595 as yet unmatched pairs. 18119 records in RAM.
INFO 2026-06-08 09:45:11 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 2s. Last read position: chr3:129,556,335
INFO 2026-06-08 09:45:11 MarkDuplicates Tracking 784431 as yet unmatched pairs. 13937 records in RAM.
INFO 2026-06-08 09:45:13 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr3:136,283,874
INFO 2026-06-08 09:45:13 MarkDuplicates Tracking 783024 as yet unmatched pairs. 12515 records in RAM.
INFO 2026-06-08 09:45:15 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr3:149,129,922
INFO 2026-06-08 09:45:15 MarkDuplicates Tracking 781722 as yet unmatched pairs. 11203 records in RAM.
INFO 2026-06-08 09:45:17 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr3:158,823,444
INFO 2026-06-08 09:45:17 MarkDuplicates Tracking 780739 as yet unmatched pairs. 10195 records in RAM.
INFO 2026-06-08 09:45:19 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr3:172,397,288
INFO 2026-06-08 09:45:19 MarkDuplicates Tracking 778454 as yet unmatched pairs. 7888 records in RAM.
INFO 2026-06-08 09:45:22 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr3:183,961,586
INFO 2026-06-08 09:45:22 MarkDuplicates Tracking 777271 as yet unmatched pairs. 6671 records in RAM.
INFO 2026-06-08 09:45:24 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr3:184,323,576
INFO 2026-06-08 09:45:24 MarkDuplicates Tracking 776041 as yet unmatched pairs. 5433 records in RAM.
INFO 2026-06-08 09:45:26 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr3:188,524,776
INFO 2026-06-08 09:45:26 MarkDuplicates Tracking 776210 as yet unmatched pairs. 5583 records in RAM.
INFO 2026-06-08 09:45:28 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr3:195,867,365
INFO 2026-06-08 09:45:28 MarkDuplicates Tracking 773565 as yet unmatched pairs. 2912 records in RAM.
INFO 2026-06-08 09:45:30 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 2s. Last read position: chr4:442,834
INFO 2026-06-08 09:45:30 MarkDuplicates Tracking 770814 as yet unmatched pairs. 23047 records in RAM.
INFO 2026-06-08 09:45:32 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr4:1,349,758
INFO 2026-06-08 09:45:32 MarkDuplicates Tracking 769052 as yet unmatched pairs. 21254 records in RAM.
INFO 2026-06-08 09:45:35 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 2s. Last read position: chr4:2,928,363
INFO 2026-06-08 09:45:35 MarkDuplicates Tracking 767695 as yet unmatched pairs. 19869 records in RAM.
INFO 2026-06-08 09:45:37 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr4:6,863,505
INFO 2026-06-08 09:45:37 MarkDuplicates Tracking 765638 as yet unmatched pairs. 17799 records in RAM.
INFO 2026-06-08 09:45:40 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr4:17,588,959
INFO 2026-06-08 09:45:40 MarkDuplicates Tracking 763852 as yet unmatched pairs. 15997 records in RAM.
INFO 2026-06-08 09:45:41 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr4:40,816,112
INFO 2026-06-08 09:45:41 MarkDuplicates Tracking 763827 as yet unmatched pairs. 15954 records in RAM.
INFO 2026-06-08 09:45:44 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr4:48,505,587
INFO 2026-06-08 09:45:44 MarkDuplicates Tracking 761056 as yet unmatched pairs. 13135 records in RAM.
INFO 2026-06-08 09:45:46 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr4:57,032,445
INFO 2026-06-08 09:45:46 MarkDuplicates Tracking 760738 as yet unmatched pairs. 12801 records in RAM.
INFO 2026-06-08 09:45:48 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 2s. Last read position: chr4:76,754,779
INFO 2026-06-08 09:45:48 MarkDuplicates Tracking 758117 as yet unmatched pairs. 10153 records in RAM.
INFO 2026-06-08 09:45:50 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 2s. Last read position: chr4:86,015,208
INFO 2026-06-08 09:45:50 MarkDuplicates Tracking 756402 as yet unmatched pairs. 8405 records in RAM.
INFO 2026-06-08 09:45:52 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr4:100,187,848
INFO 2026-06-08 09:45:52 MarkDuplicates Tracking 754945 as yet unmatched pairs. 6908 records in RAM.
INFO 2026-06-08 09:45:54 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr4:112,356,103
INFO 2026-06-08 09:45:54 MarkDuplicates Tracking 753459 as yet unmatched pairs. 5415 records in RAM.
INFO 2026-06-08 09:45:56 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr4:128,257,517
INFO 2026-06-08 09:45:56 MarkDuplicates Tracking 752110 as yet unmatched pairs. 4039 records in RAM.
INFO 2026-06-08 09:45:58 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr4:150,607,879
INFO 2026-06-08 09:45:58 MarkDuplicates Tracking 751192 as yet unmatched pairs. 3084 records in RAM.
INFO 2026-06-08 09:46:00 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr4:168,924,939
INFO 2026-06-08 09:46:00 MarkDuplicates Tracking 749900 as yet unmatched pairs. 1768 records in RAM.
INFO 2026-06-08 09:46:03 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 2s. Last read position: chr5:878,431
INFO 2026-06-08 09:46:03 MarkDuplicates Tracking 748098 as yet unmatched pairs. 49285 records in RAM.
INFO 2026-06-08 09:46:05 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr5:13,913,790
INFO 2026-06-08 09:46:05 MarkDuplicates Tracking 746174 as yet unmatched pairs. 47328 records in RAM.
INFO 2026-06-08 09:46:08 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 2s. Last read position: chr5:14,498,605
INFO 2026-06-08 09:46:08 MarkDuplicates Tracking 746493 as yet unmatched pairs. 47618 records in RAM.
INFO 2026-06-08 09:46:10 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 2s. Last read position: chr5:34,452,578
INFO 2026-06-08 09:46:10 MarkDuplicates Tracking 742910 as yet unmatched pairs. 43999 records in RAM.
INFO 2026-06-08 09:46:12 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr5:44,813,162
INFO 2026-06-08 09:46:12 MarkDuplicates Tracking 741986 as yet unmatched pairs. 43065 records in RAM.
INFO 2026-06-08 09:46:14 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr5:60,893,137
INFO 2026-06-08 09:46:14 MarkDuplicates Tracking 740312 as yet unmatched pairs. 41370 records in RAM.
INFO 2026-06-08 09:46:16 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr5:69,365,659
INFO 2026-06-08 09:46:16 MarkDuplicates Tracking 739753 as yet unmatched pairs. 40790 records in RAM.
INFO 2026-06-08 09:46:18 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr5:71,003,790
INFO 2026-06-08 09:46:18 MarkDuplicates Tracking 738383 as yet unmatched pairs. 39402 records in RAM.
INFO 2026-06-08 09:46:20 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 2s. Last read position: chr5:73,752,970
INFO 2026-06-08 09:46:20 MarkDuplicates Tracking 737240 as yet unmatched pairs. 38235 records in RAM.
INFO 2026-06-08 09:46:22 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:80,068,001
INFO 2026-06-08 09:46:22 MarkDuplicates Tracking 735617 as yet unmatched pairs. 36593 records in RAM.
INFO 2026-06-08 09:46:24 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr5:90,647,656
INFO 2026-06-08 09:46:24 MarkDuplicates Tracking 734455 as yet unmatched pairs. 35413 records in RAM.
INFO 2026-06-08 09:46:26 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr5:96,892,336
INFO 2026-06-08 09:46:26 MarkDuplicates Tracking 732867 as yet unmatched pairs. 33810 records in RAM.
INFO 2026-06-08 09:46:29 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr5:114,463,064
INFO 2026-06-08 09:46:29 MarkDuplicates Tracking 731474 as yet unmatched pairs. 32402 records in RAM.
INFO 2026-06-08 09:46:31 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 2s. Last read position: chr5:128,134,203
INFO 2026-06-08 09:46:31 MarkDuplicates Tracking 731205 as yet unmatched pairs. 32127 records in RAM.
INFO 2026-06-08 09:46:33 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 2s. Last read position: chr5:132,934,427
INFO 2026-06-08 09:46:33 MarkDuplicates Tracking 729140 as yet unmatched pairs. 30045 records in RAM.
INFO 2026-06-08 09:46:35 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr5:135,578,492
INFO 2026-06-08 09:46:35 MarkDuplicates Tracking 727971 as yet unmatched pairs. 28866 records in RAM.
INFO 2026-06-08 09:46:37 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr5:138,917,769
INFO 2026-06-08 09:46:37 MarkDuplicates Tracking 726604 as yet unmatched pairs. 27461 records in RAM.
INFO 2026-06-08 09:46:39 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr5:140,527,897
INFO 2026-06-08 09:46:39 MarkDuplicates Tracking 724239 as yet unmatched pairs. 25063 records in RAM.
INFO 2026-06-08 09:46:41 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr5:141,189,277
INFO 2026-06-08 09:46:41 MarkDuplicates Tracking 722790 as yet unmatched pairs. 23580 records in RAM.
INFO 2026-06-08 09:46:43 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr5:141,404,914
INFO 2026-06-08 09:46:43 MarkDuplicates Tracking 721671 as yet unmatched pairs. 22451 records in RAM.
INFO 2026-06-08 09:46:45 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr5:141,869,354
INFO 2026-06-08 09:46:45 MarkDuplicates Tracking 720022 as yet unmatched pairs. 20790 records in RAM.
INFO 2026-06-08 09:46:48 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr5:150,006,586
INFO 2026-06-08 09:46:48 MarkDuplicates Tracking 717706 as yet unmatched pairs. 18446 records in RAM.
INFO 2026-06-08 09:46:50 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr5:150,402,240
INFO 2026-06-08 09:46:50 MarkDuplicates Tracking 747520 as yet unmatched pairs. 48250 records in RAM.
INFO 2026-06-08 09:46:52 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr5:150,407,158
INFO 2026-06-08 09:46:52 MarkDuplicates Tracking 725716 as yet unmatched pairs. 26430 records in RAM.
INFO 2026-06-08 09:46:55 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr5:151,797,376
INFO 2026-06-08 09:46:55 MarkDuplicates Tracking 713572 as yet unmatched pairs. 14268 records in RAM.
INFO 2026-06-08 09:46:57 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 2s. Last read position: chr5:163,442,383
INFO 2026-06-08 09:46:57 MarkDuplicates Tracking 711570 as yet unmatched pairs. 12242 records in RAM.
INFO 2026-06-08 09:46:59 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 2s. Last read position: chr5:171,392,947
INFO 2026-06-08 09:46:59 MarkDuplicates Tracking 716167 as yet unmatched pairs. 16832 records in RAM.
INFO 2026-06-08 09:47:01 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr5:176,347,795
INFO 2026-06-08 09:47:01 MarkDuplicates Tracking 708805 as yet unmatched pairs. 9427 records in RAM.
INFO 2026-06-08 09:47:03 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 2s. Last read position: chr5:177,460,485
INFO 2026-06-08 09:47:03 MarkDuplicates Tracking 707645 as yet unmatched pairs. 8247 records in RAM.
INFO 2026-06-08 09:47:05 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr5:179,615,555
INFO 2026-06-08 09:47:05 MarkDuplicates Tracking 706670 as yet unmatched pairs. 7257 records in RAM.
INFO 2026-06-08 09:47:07 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:57s. Time for last 1,000,000: 2s. Last read position: chr5:179,820,919
INFO 2026-06-08 09:47:07 MarkDuplicates Tracking 706197 as yet unmatched pairs. 6768 records in RAM.
INFO 2026-06-08 09:47:09 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr5:179,833,118
INFO 2026-06-08 09:47:09 MarkDuplicates Tracking 711502 as yet unmatched pairs. 12062 records in RAM.
INFO 2026-06-08 09:47:12 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr5:180,630,013
INFO 2026-06-08 09:47:12 MarkDuplicates Tracking 700391 as yet unmatched pairs. 919 records in RAM.
INFO 2026-06-08 09:47:14 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 2s. Last read position: chr6:3,323,873
INFO 2026-06-08 09:47:14 MarkDuplicates Tracking 699997 as yet unmatched pairs. 51622 records in RAM.
INFO 2026-06-08 09:47:16 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr6:7,565,424
INFO 2026-06-08 09:47:16 MarkDuplicates Tracking 698365 as yet unmatched pairs. 49985 records in RAM.
INFO 2026-06-08 09:47:18 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 2s. Last read position: chr6:12,120,023
INFO 2026-06-08 09:47:18 MarkDuplicates Tracking 695815 as yet unmatched pairs. 47421 records in RAM.
INFO 2026-06-08 09:47:20 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr6:24,718,557
INFO 2026-06-08 09:47:20 MarkDuplicates Tracking 694454 as yet unmatched pairs. 46036 records in RAM.
INFO 2026-06-08 09:47:22 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr6:27,867,008
INFO 2026-06-08 09:47:22 MarkDuplicates Tracking 692923 as yet unmatched pairs. 44493 records in RAM.
INFO 2026-06-08 09:47:25 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 2s. Last read position: chr6:30,660,118
INFO 2026-06-08 09:47:25 MarkDuplicates Tracking 691482 as yet unmatched pairs. 43036 records in RAM.
INFO 2026-06-08 09:47:27 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 1s. Last read position: chr6:31,271,091
INFO 2026-06-08 09:47:27 MarkDuplicates Tracking 693259 as yet unmatched pairs. 44794 records in RAM.
INFO 2026-06-08 09:47:29 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr6:31,636,897
INFO 2026-06-08 09:47:29 MarkDuplicates Tracking 689203 as yet unmatched pairs. 40728 records in RAM.
INFO 2026-06-08 09:47:31 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr6:31,816,466
INFO 2026-06-08 09:47:31 MarkDuplicates Tracking 686729 as yet unmatched pairs. 38244 records in RAM.
INFO 2026-06-08 09:47:33 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr6:31,869,178
INFO 2026-06-08 09:47:33 MarkDuplicates Tracking 686958 as yet unmatched pairs. 38456 records in RAM.
INFO 2026-06-08 09:47:35 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr6:31,994,509
INFO 2026-06-08 09:47:35 MarkDuplicates Tracking 687975 as yet unmatched pairs. 39465 records in RAM.
INFO 2026-06-08 09:47:37 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr6:32,119,070
INFO 2026-06-08 09:47:37 MarkDuplicates Tracking 683465 as yet unmatched pairs. 34946 records in RAM.
INFO 2026-06-08 09:47:39 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 2s. Last read position: chr6:32,978,374
INFO 2026-06-08 09:47:39 MarkDuplicates Tracking 682316 as yet unmatched pairs. 33770 records in RAM.
INFO 2026-06-08 09:47:41 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 2s. Last read position: chr6:33,305,201
INFO 2026-06-08 09:47:41 MarkDuplicates Tracking 681204 as yet unmatched pairs. 32653 records in RAM.
INFO 2026-06-08 09:47:43 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr6:34,424,744
INFO 2026-06-08 09:47:43 MarkDuplicates Tracking 679382 as yet unmatched pairs. 30819 records in RAM.
INFO 2026-06-08 09:47:46 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 2s. Last read position: chr6:36,978,078
INFO 2026-06-08 09:47:46 MarkDuplicates Tracking 677272 as yet unmatched pairs. 28673 records in RAM.
INFO 2026-06-08 09:47:48 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:07:38s. Time for last 1,000,000: 2s. Last read position: chr6:42,880,911
INFO 2026-06-08 09:47:48 MarkDuplicates Tracking 675037 as yet unmatched pairs. 26414 records in RAM.
INFO 2026-06-08 09:47:50 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr6:43,551,315
INFO 2026-06-08 09:47:50 MarkDuplicates Tracking 673591 as yet unmatched pairs. 24952 records in RAM.
INFO 2026-06-08 09:47:52 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 2s. Last read position: chr6:47,284,341
INFO 2026-06-08 09:47:52 MarkDuplicates Tracking 672218 as yet unmatched pairs. 23562 records in RAM.
INFO 2026-06-08 09:47:54 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 2s. Last read position: chr6:57,318,571
INFO 2026-06-08 09:47:54 MarkDuplicates Tracking 670529 as yet unmatched pairs. 21828 records in RAM.
INFO 2026-06-08 09:47:56 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 2s. Last read position: chr6:75,670,589
INFO 2026-06-08 09:47:56 MarkDuplicates Tracking 669717 as yet unmatched pairs. 20981 records in RAM.
INFO 2026-06-08 09:47:58 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 1s. Last read position: chr6:85,614,966
INFO 2026-06-08 09:47:58 MarkDuplicates Tracking 667905 as yet unmatched pairs. 19144 records in RAM.
INFO 2026-06-08 09:48:01 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr6:99,551,879
INFO 2026-06-08 09:48:01 MarkDuplicates Tracking 666398 as yet unmatched pairs. 17614 records in RAM.
INFO 2026-06-08 09:48:03 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 2s. Last read position: chr6:110,213,120
INFO 2026-06-08 09:48:03 MarkDuplicates Tracking 664669 as yet unmatched pairs. 15861 records in RAM.
INFO 2026-06-08 09:48:05 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 1s. Last read position: chr6:122,717,904
INFO 2026-06-08 09:48:05 MarkDuplicates Tracking 663205 as yet unmatched pairs. 14365 records in RAM.
INFO 2026-06-08 09:48:07 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 2s. Last read position: chr6:136,275,555
INFO 2026-06-08 09:48:07 MarkDuplicates Tracking 662183 as yet unmatched pairs. 13301 records in RAM.
INFO 2026-06-08 09:48:09 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 2s. Last read position: chr6:142,770,816
INFO 2026-06-08 09:48:09 MarkDuplicates Tracking 660123 as yet unmatched pairs. 11222 records in RAM.
INFO 2026-06-08 09:48:11 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr6:149,820,630
INFO 2026-06-08 09:48:11 MarkDuplicates Tracking 658772 as yet unmatched pairs. 9840 records in RAM.
INFO 2026-06-08 09:48:13 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:08:03s. Time for last 1,000,000: 2s. Last read position: chr6:151,842,393
INFO 2026-06-08 09:48:13 MarkDuplicates Tracking 669970 as yet unmatched pairs. 21013 records in RAM.
INFO 2026-06-08 09:48:15 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 2s. Last read position: chr6:152,098,990
INFO 2026-06-08 09:48:15 MarkDuplicates Tracking 656188 as yet unmatched pairs. 7209 records in RAM.
INFO 2026-06-08 09:48:17 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 1s. Last read position: chr6:158,766,840
INFO 2026-06-08 09:48:17 MarkDuplicates Tracking 659384 as yet unmatched pairs. 10387 records in RAM.
INFO 2026-06-08 09:48:20 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr6:158,785,550
INFO 2026-06-08 09:48:20 MarkDuplicates Tracking 664510 as yet unmatched pairs. 15507 records in RAM.
INFO 2026-06-08 09:48:22 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:08:12s. Time for last 1,000,000: 2s. Last read position: chr6:166,929,713
INFO 2026-06-08 09:48:22 MarkDuplicates Tracking 651408 as yet unmatched pairs. 2386 records in RAM.
INFO 2026-06-08 09:48:24 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:08:14s. Time for last 1,000,000: 2s. Last read position: chr7:832,527
INFO 2026-06-08 09:48:24 MarkDuplicates Tracking 650316 as yet unmatched pairs. 50460 records in RAM.
INFO 2026-06-08 09:48:26 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 2s. Last read position: chr7:2,377,003
INFO 2026-06-08 09:48:26 MarkDuplicates Tracking 647440 as yet unmatched pairs. 47562 records in RAM.
INFO 2026-06-08 09:48:29 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 2s. Last read position: chr7:5,361,593
INFO 2026-06-08 09:48:29 MarkDuplicates Tracking 645433 as yet unmatched pairs. 45526 records in RAM.
INFO 2026-06-08 09:48:31 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,042
INFO 2026-06-08 09:48:31 MarkDuplicates Tracking 665010 as yet unmatched pairs. 65095 records in RAM.
INFO 2026-06-08 09:48:33 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,534
INFO 2026-06-08 09:48:33 MarkDuplicates Tracking 648726 as yet unmatched pairs. 48804 records in RAM.
INFO 2026-06-08 09:48:35 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:08:25s. Time for last 1,000,000: 2s. Last read position: chr7:8,235,930
INFO 2026-06-08 09:48:35 MarkDuplicates Tracking 640208 as yet unmatched pairs. 40272 records in RAM.
INFO 2026-06-08 09:48:37 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr7:23,266,568
INFO 2026-06-08 09:48:37 MarkDuplicates Tracking 639417 as yet unmatched pairs. 39438 records in RAM.
INFO 2026-06-08 09:48:39 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:08:29s. Time for last 1,000,000: 1s. Last read position: chr7:29,955,353
INFO 2026-06-08 09:48:39 MarkDuplicates Tracking 640205 as yet unmatched pairs. 40209 records in RAM.
INFO 2026-06-08 09:48:41 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 2s. Last read position: chr7:31,643,265
INFO 2026-06-08 09:48:41 MarkDuplicates Tracking 635519 as yet unmatched pairs. 35502 records in RAM.
INFO 2026-06-08 09:48:44 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 2s. Last read position: chr7:38,754,715
INFO 2026-06-08 09:48:44 MarkDuplicates Tracking 635496 as yet unmatched pairs. 35445 records in RAM.
INFO 2026-06-08 09:48:45 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr7:44,007,362
INFO 2026-06-08 09:48:45 MarkDuplicates Tracking 633212 as yet unmatched pairs. 33140 records in RAM.
INFO 2026-06-08 09:48:48 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr7:44,247,170
INFO 2026-06-08 09:48:48 MarkDuplicates Tracking 631028 as yet unmatched pairs. 30950 records in RAM.
INFO 2026-06-08 09:48:50 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 2s. Last read position: chr7:44,885,025
INFO 2026-06-08 09:48:50 MarkDuplicates Tracking 629616 as yet unmatched pairs. 29525 records in RAM.
INFO 2026-06-08 09:48:52 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 1s. Last read position: chr7:64,992,895
INFO 2026-06-08 09:48:52 MarkDuplicates Tracking 628045 as yet unmatched pairs. 27942 records in RAM.
INFO 2026-06-08 09:48:54 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr7:73,183,133
INFO 2026-06-08 09:48:54 MarkDuplicates Tracking 626884 as yet unmatched pairs. 26766 records in RAM.
INFO 2026-06-08 09:48:56 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 2s. Last read position: chr7:74,698,998
INFO 2026-06-08 09:48:56 MarkDuplicates Tracking 625847 as yet unmatched pairs. 25718 records in RAM.
INFO 2026-06-08 09:48:58 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr7:75,888,587
INFO 2026-06-08 09:48:58 MarkDuplicates Tracking 624435 as yet unmatched pairs. 24294 records in RAM.
INFO 2026-06-08 09:49:00 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 2s. Last read position: chr7:76,492,082
INFO 2026-06-08 09:49:00 MarkDuplicates Tracking 622976 as yet unmatched pairs. 22813 records in RAM.
INFO 2026-06-08 09:49:02 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr7:91,992,937
INFO 2026-06-08 09:49:02 MarkDuplicates Tracking 622166 as yet unmatched pairs. 21977 records in RAM.
INFO 2026-06-08 09:49:04 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr7:94,400,204
INFO 2026-06-08 09:49:04 MarkDuplicates Tracking 622165 as yet unmatched pairs. 21971 records in RAM.
INFO 2026-06-08 09:49:06 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr7:98,217,986
INFO 2026-06-08 09:49:06 MarkDuplicates Tracking 618759 as yet unmatched pairs. 18550 records in RAM.
INFO 2026-06-08 09:49:08 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr7:99,968,187
INFO 2026-06-08 09:49:08 MarkDuplicates Tracking 621463 as yet unmatched pairs. 21240 records in RAM.
INFO 2026-06-08 09:49:10 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr7:100,374,353
INFO 2026-06-08 09:49:10 MarkDuplicates Tracking 615723 as yet unmatched pairs. 15489 records in RAM.
INFO 2026-06-08 09:49:13 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr7:101,212,912
INFO 2026-06-08 09:49:13 MarkDuplicates Tracking 614017 as yet unmatched pairs. 13775 records in RAM.
INFO 2026-06-08 09:49:14 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr7:102,594,084
INFO 2026-06-08 09:49:14 MarkDuplicates Tracking 614220 as yet unmatched pairs. 13958 records in RAM.
INFO 2026-06-08 09:49:17 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 2s. Last read position: chr7:107,580,260
INFO 2026-06-08 09:49:17 MarkDuplicates Tracking 611792 as yet unmatched pairs. 11517 records in RAM.
INFO 2026-06-08 09:49:19 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:09s. Time for last 1,000,000: 1s. Last read position: chr7:127,698,938
INFO 2026-06-08 09:49:19 MarkDuplicates Tracking 613201 as yet unmatched pairs. 12908 records in RAM.
INFO 2026-06-08 09:49:21 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr7:129,762,638
INFO 2026-06-08 09:49:21 MarkDuplicates Tracking 608837 as yet unmatched pairs. 8538 records in RAM.
INFO 2026-06-08 09:49:23 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 2s. Last read position: chr7:138,871,282
INFO 2026-06-08 09:49:23 MarkDuplicates Tracking 607913 as yet unmatched pairs. 7604 records in RAM.
INFO 2026-06-08 09:49:25 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr7:143,139,149
INFO 2026-06-08 09:49:25 MarkDuplicates Tracking 607385 as yet unmatched pairs. 7058 records in RAM.
INFO 2026-06-08 09:49:27 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 2s. Last read position: chr7:149,012,243
INFO 2026-06-08 09:49:27 MarkDuplicates Tracking 605127 as yet unmatched pairs. 4794 records in RAM.
INFO 2026-06-08 09:49:29 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr7:151,071,694
INFO 2026-06-08 09:49:29 MarkDuplicates Tracking 603672 as yet unmatched pairs. 3322 records in RAM.
INFO 2026-06-08 09:49:31 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr7:152,816,575
INFO 2026-06-08 09:49:31 MarkDuplicates Tracking 601432 as yet unmatched pairs. 1054 records in RAM.
INFO 2026-06-08 09:49:34 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr8:11,284,920
INFO 2026-06-08 09:49:34 MarkDuplicates Tracking 599752 as yet unmatched pairs. 30520 records in RAM.
INFO 2026-06-08 09:49:36 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 2s. Last read position: chr8:17,935,642
INFO 2026-06-08 09:49:36 MarkDuplicates Tracking 598952 as yet unmatched pairs. 29705 records in RAM.
INFO 2026-06-08 09:49:38 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr8:22,614,490
INFO 2026-06-08 09:49:38 MarkDuplicates Tracking 598357 as yet unmatched pairs. 29096 records in RAM.
INFO 2026-06-08 09:49:40 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 2s. Last read position: chr8:29,070,433
INFO 2026-06-08 09:49:40 MarkDuplicates Tracking 595597 as yet unmatched pairs. 26308 records in RAM.
INFO 2026-06-08 09:49:43 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr8:37,697,469
INFO 2026-06-08 09:49:43 MarkDuplicates Tracking 594818 as yet unmatched pairs. 25511 records in RAM.
INFO 2026-06-08 09:49:45 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 2s. Last read position: chr8:38,936,037
INFO 2026-06-08 09:49:45 MarkDuplicates Tracking 591900 as yet unmatched pairs. 22585 records in RAM.
INFO 2026-06-08 09:49:47 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 2s. Last read position: chr8:47,860,959
INFO 2026-06-08 09:49:47 MarkDuplicates Tracking 591323 as yet unmatched pairs. 21983 records in RAM.
INFO 2026-06-08 09:49:49 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 2s. Last read position: chr8:61,637,947
INFO 2026-06-08 09:49:49 MarkDuplicates Tracking 589778 as yet unmatched pairs. 20414 records in RAM.
INFO 2026-06-08 09:49:52 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 2s. Last read position: chr8:70,162,816
INFO 2026-06-08 09:49:52 MarkDuplicates Tracking 588604 as yet unmatched pairs. 19218 records in RAM.
INFO 2026-06-08 09:49:53 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr8:89,786,612
INFO 2026-06-08 09:49:53 MarkDuplicates Tracking 586405 as yet unmatched pairs. 16988 records in RAM.
INFO 2026-06-08 09:49:56 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 2s. Last read position: chr8:98,041,792
INFO 2026-06-08 09:49:56 MarkDuplicates Tracking 589460 as yet unmatched pairs. 20030 records in RAM.
INFO 2026-06-08 09:49:58 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 2s. Last read position: chr8:100,920,668
INFO 2026-06-08 09:49:58 MarkDuplicates Tracking 584769 as yet unmatched pairs. 15328 records in RAM.
INFO 2026-06-08 09:50:00 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr8:115,414,005
INFO 2026-06-08 09:50:00 MarkDuplicates Tracking 582708 as yet unmatched pairs. 13248 records in RAM.
INFO 2026-06-08 09:50:02 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 2s. Last read position: chr8:117,152,962
INFO 2026-06-08 09:50:02 MarkDuplicates Tracking 581562 as yet unmatched pairs. 12083 records in RAM.
INFO 2026-06-08 09:50:05 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr8:127,738,800
INFO 2026-06-08 09:50:05 MarkDuplicates Tracking 579700 as yet unmatched pairs. 10198 records in RAM.
INFO 2026-06-08 09:50:07 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,579,818
INFO 2026-06-08 09:50:07 MarkDuplicates Tracking 577429 as yet unmatched pairs. 7898 records in RAM.
INFO 2026-06-08 09:50:09 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr8:143,859,888
INFO 2026-06-08 09:50:09 MarkDuplicates Tracking 576319 as yet unmatched pairs. 6781 records in RAM.
INFO 2026-06-08 09:50:10 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,464
INFO 2026-06-08 09:50:10 MarkDuplicates Tracking 575066 as yet unmatched pairs. 5523 records in RAM.
INFO 2026-06-08 09:50:12 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,539
INFO 2026-06-08 09:50:12 MarkDuplicates Tracking 574074 as yet unmatched pairs. 4524 records in RAM.
INFO 2026-06-08 09:50:14 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr8:144,243,377
INFO 2026-06-08 09:50:14 MarkDuplicates Tracking 571573 as yet unmatched pairs. 2014 records in RAM.
INFO 2026-06-08 09:50:16 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 2s. Last read position: chr9:711,404
INFO 2026-06-08 09:50:16 MarkDuplicates Tracking 569580 as yet unmatched pairs. 31318 records in RAM.
INFO 2026-06-08 09:50:18 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr9:33,026,881
INFO 2026-06-08 09:50:18 MarkDuplicates Tracking 568146 as yet unmatched pairs. 29838 records in RAM.
INFO 2026-06-08 09:50:21 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr9:35,698,898
INFO 2026-06-08 09:50:21 MarkDuplicates Tracking 566753 as yet unmatched pairs. 28425 records in RAM.
INFO 2026-06-08 09:50:23 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 2s. Last read position: chr9:69,221,296
INFO 2026-06-08 09:50:23 MarkDuplicates Tracking 565615 as yet unmatched pairs. 27271 records in RAM.
INFO 2026-06-08 09:50:25 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr9:86,027,805
INFO 2026-06-08 09:50:25 MarkDuplicates Tracking 564541 as yet unmatched pairs. 26159 records in RAM.
INFO 2026-06-08 09:50:27 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:17s. Time for last 1,000,000: 2s. Last read position: chr9:93,234,848
INFO 2026-06-08 09:50:27 MarkDuplicates Tracking 562300 as yet unmatched pairs. 23900 records in RAM.
INFO 2026-06-08 09:50:29 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 2s. Last read position: chr9:98,109,927
INFO 2026-06-08 09:50:29 MarkDuplicates Tracking 560588 as yet unmatched pairs. 22174 records in RAM.
INFO 2026-06-08 09:50:31 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr9:110,244,131
INFO 2026-06-08 09:50:31 MarkDuplicates Tracking 560159 as yet unmatched pairs. 21743 records in RAM.
INFO 2026-06-08 09:50:33 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 2s. Last read position: chr9:114,611,478
INFO 2026-06-08 09:50:33 MarkDuplicates Tracking 557032 as yet unmatched pairs. 18613 records in RAM.
INFO 2026-06-08 09:50:35 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr9:124,321,461
INFO 2026-06-08 09:50:35 MarkDuplicates Tracking 555781 as yet unmatched pairs. 17341 records in RAM.
INFO 2026-06-08 09:50:37 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr9:127,809,788
INFO 2026-06-08 09:50:37 MarkDuplicates Tracking 554568 as yet unmatched pairs. 16113 records in RAM.
INFO 2026-06-08 09:50:40 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 2s. Last read position: chr9:128,607,633
INFO 2026-06-08 09:50:40 MarkDuplicates Tracking 552436 as yet unmatched pairs. 13974 records in RAM.
INFO 2026-06-08 09:50:42 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 2s. Last read position: chr9:130,092,283
INFO 2026-06-08 09:50:42 MarkDuplicates Tracking 550851 as yet unmatched pairs. 12366 records in RAM.
INFO 2026-06-08 09:50:44 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr9:131,589,953
INFO 2026-06-08 09:50:44 MarkDuplicates Tracking 549204 as yet unmatched pairs. 10714 records in RAM.
INFO 2026-06-08 09:50:46 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 2s. Last read position: chr9:134,048,301
INFO 2026-06-08 09:50:46 MarkDuplicates Tracking 548778 as yet unmatched pairs. 10275 records in RAM.
INFO 2026-06-08 09:50:49 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr9:136,443,851
INFO 2026-06-08 09:50:49 MarkDuplicates Tracking 547740 as yet unmatched pairs. 9233 records in RAM.
INFO 2026-06-08 09:50:50 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr9:136,839,256
INFO 2026-06-08 09:50:50 MarkDuplicates Tracking 544699 as yet unmatched pairs. 6180 records in RAM.
INFO 2026-06-08 09:50:53 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 2s. Last read position: chr9:137,162,179
INFO 2026-06-08 09:50:53 MarkDuplicates Tracking 542579 as yet unmatched pairs. 4055 records in RAM.
INFO 2026-06-08 09:50:55 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 2s. Last read position: chr9:137,452,768
INFO 2026-06-08 09:50:55 MarkDuplicates Tracking 540000 as yet unmatched pairs. 1460 records in RAM.
INFO 2026-06-08 09:50:57 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 2s. Last read position: chr10:3,149,673
INFO 2026-06-08 09:50:57 MarkDuplicates Tracking 538731 as yet unmatched pairs. 32863 records in RAM.
INFO 2026-06-08 09:50:59 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 2s. Last read position: chr10:5,925,412
INFO 2026-06-08 09:50:59 MarkDuplicates Tracking 536619 as yet unmatched pairs. 30743 records in RAM.
INFO 2026-06-08 09:51:01 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 2s. Last read position: chr10:12,177,752
INFO 2026-06-08 09:51:01 MarkDuplicates Tracking 535226 as yet unmatched pairs. 29329 records in RAM.
INFO 2026-06-08 09:51:03 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr10:24,495,148
INFO 2026-06-08 09:51:03 MarkDuplicates Tracking 533615 as yet unmatched pairs. 27710 records in RAM.
INFO 2026-06-08 09:51:06 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 2s. Last read position: chr10:32,015,659
INFO 2026-06-08 09:51:06 MarkDuplicates Tracking 535183 as yet unmatched pairs. 29265 records in RAM.
INFO 2026-06-08 09:51:08 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr10:32,929,969
INFO 2026-06-08 09:51:08 MarkDuplicates Tracking 532485 as yet unmatched pairs. 26547 records in RAM.
INFO 2026-06-08 09:51:10 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr10:37,165,116
INFO 2026-06-08 09:51:10 MarkDuplicates Tracking 536493 as yet unmatched pairs. 30537 records in RAM.
INFO 2026-06-08 09:51:12 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 2s. Last read position: chr10:37,193,233
INFO 2026-06-08 09:51:12 MarkDuplicates Tracking 536490 as yet unmatched pairs. 30529 records in RAM.
INFO 2026-06-08 09:51:14 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr10:43,100,673
INFO 2026-06-08 09:51:14 MarkDuplicates Tracking 535401 as yet unmatched pairs. 29367 records in RAM.
INFO 2026-06-08 09:51:16 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 2s. Last read position: chr10:43,112,181
INFO 2026-06-08 09:51:16 MarkDuplicates Tracking 543705 as yet unmatched pairs. 37648 records in RAM.
INFO 2026-06-08 09:51:18 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 2s. Last read position: chr10:43,387,328
INFO 2026-06-08 09:51:18 MarkDuplicates Tracking 524894 as yet unmatched pairs. 18713 records in RAM.
INFO 2026-06-08 09:51:20 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr10:48,015,669
INFO 2026-06-08 09:51:20 MarkDuplicates Tracking 522820 as yet unmatched pairs. 16638 records in RAM.
INFO 2026-06-08 09:51:22 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 2s. Last read position: chr10:67,912,938
INFO 2026-06-08 09:51:22 MarkDuplicates Tracking 521184 as yet unmatched pairs. 14965 records in RAM.
INFO 2026-06-08 09:51:24 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr10:72,861,686
INFO 2026-06-08 09:51:24 MarkDuplicates Tracking 519421 as yet unmatched pairs. 13177 records in RAM.
INFO 2026-06-08 09:51:26 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 2s. Last read position: chr10:77,806,757
INFO 2026-06-08 09:51:26 MarkDuplicates Tracking 518333 as yet unmatched pairs. 12069 records in RAM.
INFO 2026-06-08 09:51:28 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr10:87,094,527
INFO 2026-06-08 09:51:28 MarkDuplicates Tracking 516826 as yet unmatched pairs. 10549 records in RAM.
INFO 2026-06-08 09:51:30 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr10:95,664,192
INFO 2026-06-08 09:51:30 MarkDuplicates Tracking 515200 as yet unmatched pairs. 8902 records in RAM.
INFO 2026-06-08 09:51:33 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr10:100,360,793
INFO 2026-06-08 09:51:33 MarkDuplicates Tracking 514609 as yet unmatched pairs. 8301 records in RAM.
INFO 2026-06-08 09:51:35 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 2s. Last read position: chr10:102,401,843
INFO 2026-06-08 09:51:35 MarkDuplicates Tracking 512157 as yet unmatched pairs. 5811 records in RAM.
INFO 2026-06-08 09:51:37 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr10:114,473,015
INFO 2026-06-08 09:51:37 MarkDuplicates Tracking 510584 as yet unmatched pairs. 4224 records in RAM.
INFO 2026-06-08 09:51:39 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 2s. Last read position: chr10:119,917,984
INFO 2026-06-08 09:51:39 MarkDuplicates Tracking 509069 as yet unmatched pairs. 2689 records in RAM.
INFO 2026-06-08 09:51:41 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 2s. Last read position: chr10:127,127,708
INFO 2026-06-08 09:51:41 MarkDuplicates Tracking 507630 as yet unmatched pairs. 1219 records in RAM.
INFO 2026-06-08 09:51:44 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 2s. Last read position: chr11:320,610
INFO 2026-06-08 09:51:44 MarkDuplicates Tracking 508223 as yet unmatched pairs. 65460 records in RAM.
INFO 2026-06-08 09:51:46 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 2s. Last read position: chr11:555,262
INFO 2026-06-08 09:51:46 MarkDuplicates Tracking 504927 as yet unmatched pairs. 62150 records in RAM.
INFO 2026-06-08 09:51:49 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr11:597,404
INFO 2026-06-08 09:51:49 MarkDuplicates Tracking 506044 as yet unmatched pairs. 63258 records in RAM.
INFO 2026-06-08 09:51:51 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr11:613,861
INFO 2026-06-08 09:51:51 MarkDuplicates Tracking 500255 as yet unmatched pairs. 57459 records in RAM.
INFO 2026-06-08 09:51:53 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr11:822,467
INFO 2026-06-08 09:51:53 MarkDuplicates Tracking 497906 as yet unmatched pairs. 55098 records in RAM.
INFO 2026-06-08 09:51:55 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 2s. Last read position: chr11:1,390,318
INFO 2026-06-08 09:51:55 MarkDuplicates Tracking 495175 as yet unmatched pairs. 52348 records in RAM.
INFO 2026-06-08 09:51:57 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr11:1,753,492
INFO 2026-06-08 09:51:57 MarkDuplicates Tracking 505111 as yet unmatched pairs. 62270 records in RAM.
INFO 2026-06-08 09:51:59 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 2s. Last read position: chr11:1,757,417
INFO 2026-06-08 09:51:59 MarkDuplicates Tracking 505167 as yet unmatched pairs. 62315 records in RAM.
INFO 2026-06-08 09:52:01 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 2s. Last read position: chr11:1,761,407
INFO 2026-06-08 09:52:01 MarkDuplicates Tracking 500917 as yet unmatched pairs. 58057 records in RAM.
INFO 2026-06-08 09:52:03 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr11:3,693,315
INFO 2026-06-08 09:52:03 MarkDuplicates Tracking 488485 as yet unmatched pairs. 45618 records in RAM.
INFO 2026-06-08 09:52:06 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 2s. Last read position: chr11:6,566,177
INFO 2026-06-08 09:52:06 MarkDuplicates Tracking 486398 as yet unmatched pairs. 43518 records in RAM.
INFO 2026-06-08 09:52:07 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr11:9,574,305
INFO 2026-06-08 09:52:07 MarkDuplicates Tracking 485160 as yet unmatched pairs. 42272 records in RAM.
INFO 2026-06-08 09:52:10 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr11:12,881,897
INFO 2026-06-08 09:52:10 MarkDuplicates Tracking 483613 as yet unmatched pairs. 40714 records in RAM.
INFO 2026-06-08 09:52:12 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 2s. Last read position: chr11:18,400,941
INFO 2026-06-08 09:52:12 MarkDuplicates Tracking 482815 as yet unmatched pairs. 39902 records in RAM.
INFO 2026-06-08 09:52:14 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr11:32,934,239
INFO 2026-06-08 09:52:14 MarkDuplicates Tracking 480528 as yet unmatched pairs. 37515 records in RAM.
INFO 2026-06-08 09:52:16 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 2s. Last read position: chr11:43,342,658
INFO 2026-06-08 09:52:16 MarkDuplicates Tracking 478840 as yet unmatched pairs. 35805 records in RAM.
INFO 2026-06-08 09:52:18 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 2s. Last read position: chr11:46,428,627
INFO 2026-06-08 09:52:18 MarkDuplicates Tracking 477374 as yet unmatched pairs. 34319 records in RAM.
INFO 2026-06-08 09:52:20 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr11:47,573,670
INFO 2026-06-08 09:52:20 MarkDuplicates Tracking 475854 as yet unmatched pairs. 32790 records in RAM.
INFO 2026-06-08 09:52:23 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 2s. Last read position: chr11:57,801,757
INFO 2026-06-08 09:52:23 MarkDuplicates Tracking 475707 as yet unmatched pairs. 32627 records in RAM.
INFO 2026-06-08 09:52:25 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 2s. Last read position: chr11:61,533,042
INFO 2026-06-08 09:52:25 MarkDuplicates Tracking 473151 as yet unmatched pairs. 30057 records in RAM.
INFO 2026-06-08 09:52:27 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:62,523,978
INFO 2026-06-08 09:52:27 MarkDuplicates Tracking 471872 as yet unmatched pairs. 28777 records in RAM.
INFO 2026-06-08 09:52:29 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr11:62,612,529
INFO 2026-06-08 09:52:29 MarkDuplicates Tracking 469814 as yet unmatched pairs. 26715 records in RAM.
INFO 2026-06-08 09:52:31 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr11:63,997,555
INFO 2026-06-08 09:52:31 MarkDuplicates Tracking 468210 as yet unmatched pairs. 25085 records in RAM.
INFO 2026-06-08 09:52:33 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr11:65,079,455
INFO 2026-06-08 09:52:33 MarkDuplicates Tracking 466299 as yet unmatched pairs. 23170 records in RAM.
INFO 2026-06-08 09:52:35 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 2s. Last read position: chr11:65,605,765
INFO 2026-06-08 09:52:35 MarkDuplicates Tracking 464556 as yet unmatched pairs. 21346 records in RAM.
INFO 2026-06-08 09:52:37 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr11:66,284,910
INFO 2026-06-08 09:52:37 MarkDuplicates Tracking 463524 as yet unmatched pairs. 20312 records in RAM.
INFO 2026-06-08 09:52:39 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 2s. Last read position: chr11:67,401,153
INFO 2026-06-08 09:52:39 MarkDuplicates Tracking 461210 as yet unmatched pairs. 17987 records in RAM.
INFO 2026-06-08 09:52:41 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr11:68,892,506
INFO 2026-06-08 09:52:41 MarkDuplicates Tracking 459693 as yet unmatched pairs. 16451 records in RAM.
INFO 2026-06-08 09:52:43 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr11:70,326,749
INFO 2026-06-08 09:52:43 MarkDuplicates Tracking 457631 as yet unmatched pairs. 14366 records in RAM.
INFO 2026-06-08 09:52:45 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 2s. Last read position: chr11:72,009,324
INFO 2026-06-08 09:52:45 MarkDuplicates Tracking 456610 as yet unmatched pairs. 13319 records in RAM.
INFO 2026-06-08 09:52:48 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 2s. Last read position: chr11:73,976,853
INFO 2026-06-08 09:52:48 MarkDuplicates Tracking 454704 as yet unmatched pairs. 11393 records in RAM.
INFO 2026-06-08 09:52:50 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr11:77,702,227
INFO 2026-06-08 09:52:50 MarkDuplicates Tracking 452983 as yet unmatched pairs. 9661 records in RAM.
INFO 2026-06-08 09:52:52 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 2s. Last read position: chr11:86,807,806
INFO 2026-06-08 09:52:52 MarkDuplicates Tracking 452093 as yet unmatched pairs. 8753 records in RAM.
INFO 2026-06-08 09:52:54 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr11:103,996,147
INFO 2026-06-08 09:52:54 MarkDuplicates Tracking 449273 as yet unmatched pairs. 5924 records in RAM.
INFO 2026-06-08 09:52:56 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 2s. Last read position: chr11:118,379,665
INFO 2026-06-08 09:52:56 MarkDuplicates Tracking 448319 as yet unmatched pairs. 4948 records in RAM.
INFO 2026-06-08 09:52:59 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 2s. Last read position: chr11:119,182,243
INFO 2026-06-08 09:52:59 MarkDuplicates Tracking 446344 as yet unmatched pairs. 2971 records in RAM.
INFO 2026-06-08 09:53:01 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 2s. Last read position: chr11:125,597,080
INFO 2026-06-08 09:53:01 MarkDuplicates Tracking 445433 as yet unmatched pairs. 2056 records in RAM.
INFO 2026-06-08 09:53:04 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr12:19,042
INFO 2026-06-08 09:53:04 MarkDuplicates Tracking 443765 as yet unmatched pairs. 48252 records in RAM.
INFO 2026-06-08 09:53:06 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr12:2,861,221
INFO 2026-06-08 09:53:06 MarkDuplicates Tracking 442111 as yet unmatched pairs. 46586 records in RAM.
INFO 2026-06-08 09:53:08 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 2s. Last read position: chr12:6,492,320
INFO 2026-06-08 09:53:08 MarkDuplicates Tracking 441503 as yet unmatched pairs. 45975 records in RAM.
INFO 2026-06-08 09:53:10 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr12:6,869,363
INFO 2026-06-08 09:53:10 MarkDuplicates Tracking 439480 as yet unmatched pairs. 43948 records in RAM.
INFO 2026-06-08 09:53:12 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr12:8,921,610
INFO 2026-06-08 09:53:12 MarkDuplicates Tracking 437556 as yet unmatched pairs. 42022 records in RAM.
INFO 2026-06-08 09:53:14 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:12,908,276
INFO 2026-06-08 09:53:14 MarkDuplicates Tracking 437849 as yet unmatched pairs. 42291 records in RAM.
INFO 2026-06-08 09:53:16 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 2s. Last read position: chr12:19,359,534
INFO 2026-06-08 09:53:16 MarkDuplicates Tracking 434849 as yet unmatched pairs. 39283 records in RAM.
INFO 2026-06-08 09:53:19 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 2s. Last read position: chr12:32,824,115
INFO 2026-06-08 09:53:19 MarkDuplicates Tracking 433191 as yet unmatched pairs. 37621 records in RAM.
INFO 2026-06-08 09:53:21 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:47,798,943
INFO 2026-06-08 09:53:21 MarkDuplicates Tracking 432915 as yet unmatched pairs. 37336 records in RAM.
INFO 2026-06-08 09:53:23 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr12:49,045,920
INFO 2026-06-08 09:53:23 MarkDuplicates Tracking 430650 as yet unmatched pairs. 35062 records in RAM.
INFO 2026-06-08 09:53:25 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr12:49,752,489
INFO 2026-06-08 09:53:25 MarkDuplicates Tracking 432511 as yet unmatched pairs. 36915 records in RAM.
INFO 2026-06-08 09:53:27 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:51,377,232
INFO 2026-06-08 09:53:27 MarkDuplicates Tracking 427705 as yet unmatched pairs. 32105 records in RAM.
INFO 2026-06-08 09:53:29 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 2s. Last read position: chr12:53,059,610
INFO 2026-06-08 09:53:29 MarkDuplicates Tracking 425764 as yet unmatched pairs. 30152 records in RAM.
INFO 2026-06-08 09:53:31 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr12:53,483,356
INFO 2026-06-08 09:53:31 MarkDuplicates Tracking 424026 as yet unmatched pairs. 28404 records in RAM.
INFO 2026-06-08 09:53:33 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr12:55,412,904
INFO 2026-06-08 09:53:33 MarkDuplicates Tracking 422586 as yet unmatched pairs. 26960 records in RAM.
INFO 2026-06-08 09:53:35 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 2s. Last read position: chr12:56,142,611
INFO 2026-06-08 09:53:35 MarkDuplicates Tracking 421096 as yet unmatched pairs. 25466 records in RAM.
INFO 2026-06-08 09:53:38 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr12:56,603,414
INFO 2026-06-08 09:53:38 MarkDuplicates Tracking 419705 as yet unmatched pairs. 24061 records in RAM.
INFO 2026-06-08 09:53:39 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr12:57,099,308
INFO 2026-06-08 09:53:39 MarkDuplicates Tracking 421341 as yet unmatched pairs. 25696 records in RAM.
INFO 2026-06-08 09:53:42 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr12:57,297,339
INFO 2026-06-08 09:53:42 MarkDuplicates Tracking 416441 as yet unmatched pairs. 20794 records in RAM.
INFO 2026-06-08 09:53:44 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr12:62,495,012
INFO 2026-06-08 09:53:44 MarkDuplicates Tracking 415253 as yet unmatched pairs. 19588 records in RAM.
INFO 2026-06-08 09:53:46 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr12:69,348,514
INFO 2026-06-08 09:53:46 MarkDuplicates Tracking 413439 as yet unmatched pairs. 17746 records in RAM.
INFO 2026-06-08 09:53:49 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr12:91,158,388
INFO 2026-06-08 09:53:49 MarkDuplicates Tracking 412099 as yet unmatched pairs. 16384 records in RAM.
INFO 2026-06-08 09:53:51 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 2s. Last read position: chr12:96,282,544
INFO 2026-06-08 09:53:51 MarkDuplicates Tracking 410592 as yet unmatched pairs. 14870 records in RAM.
INFO 2026-06-08 09:53:53 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 2s. Last read position: chr12:104,325,400
INFO 2026-06-08 09:53:53 MarkDuplicates Tracking 408985 as yet unmatched pairs. 13242 records in RAM.
INFO 2026-06-08 09:53:55 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 2s. Last read position: chr12:110,345,367
INFO 2026-06-08 09:53:55 MarkDuplicates Tracking 407921 as yet unmatched pairs. 12171 records in RAM.
INFO 2026-06-08 09:53:57 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr12:112,408,447
INFO 2026-06-08 09:53:57 MarkDuplicates Tracking 406472 as yet unmatched pairs. 10717 records in RAM.
INFO 2026-06-08 09:54:00 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 2s. Last read position: chr12:116,237,572
INFO 2026-06-08 09:54:00 MarkDuplicates Tracking 405890 as yet unmatched pairs. 10124 records in RAM.
INFO 2026-06-08 09:54:02 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr12:120,534,589
INFO 2026-06-08 09:54:02 MarkDuplicates Tracking 403026 as yet unmatched pairs. 7244 records in RAM.
INFO 2026-06-08 09:54:04 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 2s. Last read position: chr12:122,481,522
INFO 2026-06-08 09:54:04 MarkDuplicates Tracking 401141 as yet unmatched pairs. 5341 records in RAM.
INFO 2026-06-08 09:54:06 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr12:124,340,397
INFO 2026-06-08 09:54:06 MarkDuplicates Tracking 399851 as yet unmatched pairs. 4034 records in RAM.
INFO 2026-06-08 09:54:09 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr12:131,961,162
INFO 2026-06-08 09:54:09 MarkDuplicates Tracking 398201 as yet unmatched pairs. 2369 records in RAM.
INFO 2026-06-08 09:54:11 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr13:18,298,319
INFO 2026-06-08 09:54:11 MarkDuplicates Tracking 395838 as yet unmatched pairs. 11860 records in RAM.
INFO 2026-06-08 09:54:13 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 2s. Last read position: chr13:24,224,155
INFO 2026-06-08 09:54:13 MarkDuplicates Tracking 395105 as yet unmatched pairs. 11119 records in RAM.
INFO 2026-06-08 09:54:15 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr13:35,041,021
INFO 2026-06-08 09:54:15 MarkDuplicates Tracking 393424 as yet unmatched pairs. 9423 records in RAM.
INFO 2026-06-08 09:54:17 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr13:44,434,552
INFO 2026-06-08 09:54:17 MarkDuplicates Tracking 391978 as yet unmatched pairs. 7965 records in RAM.
INFO 2026-06-08 09:54:19 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr13:52,024,299
INFO 2026-06-08 09:54:19 MarkDuplicates Tracking 390413 as yet unmatched pairs. 6385 records in RAM.
INFO 2026-06-08 09:54:21 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr13:85,796,174
INFO 2026-06-08 09:54:21 MarkDuplicates Tracking 392183 as yet unmatched pairs. 8136 records in RAM.
INFO 2026-06-08 09:54:23 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr13:101,583,236
INFO 2026-06-08 09:54:23 MarkDuplicates Tracking 387336 as yet unmatched pairs. 3273 records in RAM.
INFO 2026-06-08 09:54:25 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr13:113,070,101
INFO 2026-06-08 09:54:25 MarkDuplicates Tracking 386516 as yet unmatched pairs. 2439 records in RAM.
INFO 2026-06-08 09:54:28 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 2s. Last read position: chr14:20,457,209
INFO 2026-06-08 09:54:28 MarkDuplicates Tracking 384336 as yet unmatched pairs. 24215 records in RAM.
INFO 2026-06-08 09:54:30 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 2s. Last read position: chr14:22,904,311
INFO 2026-06-08 09:54:30 MarkDuplicates Tracking 382319 as yet unmatched pairs. 22196 records in RAM.
INFO 2026-06-08 09:54:32 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr14:24,182,094
INFO 2026-06-08 09:54:32 MarkDuplicates Tracking 380730 as yet unmatched pairs. 20591 records in RAM.
INFO 2026-06-08 09:54:34 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 2s. Last read position: chr14:32,092,401
INFO 2026-06-08 09:54:34 MarkDuplicates Tracking 378999 as yet unmatched pairs. 18848 records in RAM.
INFO 2026-06-08 09:54:36 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr14:49,585,959
INFO 2026-06-08 09:54:36 MarkDuplicates Tracking 378539 as yet unmatched pairs. 18371 records in RAM.
INFO 2026-06-08 09:54:38 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 2s. Last read position: chr14:55,351,445
INFO 2026-06-08 09:54:38 MarkDuplicates Tracking 376157 as yet unmatched pairs. 15931 records in RAM.
INFO 2026-06-08 09:54:40 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 2s. Last read position: chr14:64,426,052
INFO 2026-06-08 09:54:40 MarkDuplicates Tracking 374550 as yet unmatched pairs. 14312 records in RAM.
INFO 2026-06-08 09:54:42 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr14:69,885,718
INFO 2026-06-08 09:54:42 MarkDuplicates Tracking 373080 as yet unmatched pairs. 12827 records in RAM.
INFO 2026-06-08 09:54:44 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr14:74,764,346
INFO 2026-06-08 09:54:44 MarkDuplicates Tracking 371825 as yet unmatched pairs. 11564 records in RAM.
INFO 2026-06-08 09:54:46 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr14:88,609,298
INFO 2026-06-08 09:54:46 MarkDuplicates Tracking 370164 as yet unmatched pairs. 9893 records in RAM.
INFO 2026-06-08 09:54:48 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 2s. Last read position: chr14:94,614,521
INFO 2026-06-08 09:54:48 MarkDuplicates Tracking 370997 as yet unmatched pairs. 10722 records in RAM.
INFO 2026-06-08 09:54:50 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 2s. Last read position: chr14:100,239,400
INFO 2026-06-08 09:54:50 MarkDuplicates Tracking 366862 as yet unmatched pairs. 6580 records in RAM.
INFO 2026-06-08 09:54:52 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr14:102,208,763
INFO 2026-06-08 09:54:52 MarkDuplicates Tracking 365409 as yet unmatched pairs. 5113 records in RAM.
INFO 2026-06-08 09:54:54 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 2s. Last read position: chr14:104,773,251
INFO 2026-06-08 09:54:54 MarkDuplicates Tracking 364718 as yet unmatched pairs. 4416 records in RAM.
INFO 2026-06-08 09:54:56 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr14:104,949,688
INFO 2026-06-08 09:54:56 MarkDuplicates Tracking 365738 as yet unmatched pairs. 5427 records in RAM.
INFO 2026-06-08 09:54:59 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 2s. Last read position: chr15:21,373,141
INFO 2026-06-08 09:54:59 MarkDuplicates Tracking 360241 as yet unmatched pairs. 31891 records in RAM.
INFO 2026-06-08 09:55:01 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr15:28,640,298
INFO 2026-06-08 09:55:01 MarkDuplicates Tracking 359126 as yet unmatched pairs. 30766 records in RAM.
INFO 2026-06-08 09:55:03 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr15:34,529,092
INFO 2026-06-08 09:55:03 MarkDuplicates Tracking 358065 as yet unmatched pairs. 29697 records in RAM.
INFO 2026-06-08 09:55:05 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr15:40,411,619
INFO 2026-06-08 09:55:05 MarkDuplicates Tracking 356631 as yet unmatched pairs. 28253 records in RAM.
INFO 2026-06-08 09:55:07 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:57s. Time for last 1,000,000: 1s. Last read position: chr15:41,740,048
INFO 2026-06-08 09:55:07 MarkDuplicates Tracking 355451 as yet unmatched pairs. 27061 records in RAM.
INFO 2026-06-08 09:55:09 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 2s. Last read position: chr15:43,407,445
INFO 2026-06-08 09:55:09 MarkDuplicates Tracking 353692 as yet unmatched pairs. 25289 records in RAM.
INFO 2026-06-08 09:55:11 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr15:43,792,995
INFO 2026-06-08 09:55:11 MarkDuplicates Tracking 363885 as yet unmatched pairs. 35476 records in RAM.
INFO 2026-06-08 09:55:13 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 2s. Last read position: chr15:48,153,811
INFO 2026-06-08 09:55:13 MarkDuplicates Tracking 350766 as yet unmatched pairs. 22350 records in RAM.
INFO 2026-06-08 09:55:15 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:15:05s. Time for last 1,000,000: 2s. Last read position: chr15:52,205,875
INFO 2026-06-08 09:55:15 MarkDuplicates Tracking 349496 as yet unmatched pairs. 21079 records in RAM.
INFO 2026-06-08 09:55:17 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:15:07s. Time for last 1,000,000: 1s. Last read position: chr15:58,610,234
INFO 2026-06-08 09:55:17 MarkDuplicates Tracking 348055 as yet unmatched pairs. 19637 records in RAM.
INFO 2026-06-08 09:55:19 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 2s. Last read position: chr15:63,326,177
INFO 2026-06-08 09:55:19 MarkDuplicates Tracking 346848 as yet unmatched pairs. 18418 records in RAM.
INFO 2026-06-08 09:55:21 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 1s. Last read position: chr15:65,088,775
INFO 2026-06-08 09:55:21 MarkDuplicates Tracking 344535 as yet unmatched pairs. 16092 records in RAM.
INFO 2026-06-08 09:55:23 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 2s. Last read position: chr15:69,255,992
INFO 2026-06-08 09:55:23 MarkDuplicates Tracking 343185 as yet unmatched pairs. 14729 records in RAM.
INFO 2026-06-08 09:55:26 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr15:72,210,347
INFO 2026-06-08 09:55:26 MarkDuplicates Tracking 342863 as yet unmatched pairs. 14400 records in RAM.
INFO 2026-06-08 09:55:28 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr15:74,032,684
INFO 2026-06-08 09:55:28 MarkDuplicates Tracking 340588 as yet unmatched pairs. 12119 records in RAM.
INFO 2026-06-08 09:55:30 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 2s. Last read position: chr15:75,355,847
INFO 2026-06-08 09:55:30 MarkDuplicates Tracking 338285 as yet unmatched pairs. 9810 records in RAM.
INFO 2026-06-08 09:55:32 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr15:78,490,681
INFO 2026-06-08 09:55:32 MarkDuplicates Tracking 336350 as yet unmatched pairs. 7866 records in RAM.
INFO 2026-06-08 09:55:34 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr15:82,539,982
INFO 2026-06-08 09:55:34 MarkDuplicates Tracking 335065 as yet unmatched pairs. 6576 records in RAM.
INFO 2026-06-08 09:55:36 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 2s. Last read position: chr15:88,475,153
INFO 2026-06-08 09:55:36 MarkDuplicates Tracking 333473 as yet unmatched pairs. 4973 records in RAM.
INFO 2026-06-08 09:55:38 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr15:90,232,219
INFO 2026-06-08 09:55:38 MarkDuplicates Tracking 333427 as yet unmatched pairs. 4913 records in RAM.
INFO 2026-06-08 09:55:40 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 2s. Last read position: chr15:92,956,489
INFO 2026-06-08 09:55:40 MarkDuplicates Tracking 330418 as yet unmatched pairs. 1889 records in RAM.
INFO 2026-06-08 09:55:43 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chr16:60,243
INFO 2026-06-08 09:55:43 MarkDuplicates Tracking 329307 as yet unmatched pairs. 57988 records in RAM.
INFO 2026-06-08 09:55:44 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:15:34s. Time for last 1,000,000: 1s. Last read position: chr16:590,374
INFO 2026-06-08 09:55:44 MarkDuplicates Tracking 326953 as yet unmatched pairs. 55617 records in RAM.
INFO 2026-06-08 09:55:47 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 2s. Last read position: chr16:787,098
INFO 2026-06-08 09:55:47 MarkDuplicates Tracking 324182 as yet unmatched pairs. 52836 records in RAM.
INFO 2026-06-08 09:55:49 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:15:39s. Time for last 1,000,000: 2s. Last read position: chr16:1,632,319
INFO 2026-06-08 09:55:49 MarkDuplicates Tracking 322208 as yet unmatched pairs. 50855 records in RAM.
INFO 2026-06-08 09:55:51 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 1s. Last read position: chr16:2,036,734
INFO 2026-06-08 09:55:51 MarkDuplicates Tracking 321195 as yet unmatched pairs. 49832 records in RAM.
INFO 2026-06-08 09:55:53 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:15:43s. Time for last 1,000,000: 2s. Last read position: chr16:2,176,560
INFO 2026-06-08 09:55:53 MarkDuplicates Tracking 318828 as yet unmatched pairs. 47452 records in RAM.
INFO 2026-06-08 09:55:55 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr16:2,761,570
INFO 2026-06-08 09:55:55 MarkDuplicates Tracking 318563 as yet unmatched pairs. 47187 records in RAM.
INFO 2026-06-08 09:55:57 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 2s. Last read position: chr16:2,767,791
INFO 2026-06-08 09:55:57 MarkDuplicates Tracking 316260 as yet unmatched pairs. 44881 records in RAM.
INFO 2026-06-08 09:55:59 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:15:49s. Time for last 1,000,000: 2s. Last read position: chr16:3,390,006
INFO 2026-06-08 09:55:59 MarkDuplicates Tracking 313178 as yet unmatched pairs. 41790 records in RAM.
INFO 2026-06-08 09:56:01 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:15:51s. Time for last 1,000,000: 1s. Last read position: chr16:4,466,216
INFO 2026-06-08 09:56:01 MarkDuplicates Tracking 311607 as yet unmatched pairs. 40213 records in RAM.
INFO 2026-06-08 09:56:03 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 2s. Last read position: chr16:9,091,968
INFO 2026-06-08 09:56:03 MarkDuplicates Tracking 310618 as yet unmatched pairs. 39224 records in RAM.
INFO 2026-06-08 09:56:05 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 2s. Last read position: chr16:14,247,132
INFO 2026-06-08 09:56:05 MarkDuplicates Tracking 309545 as yet unmatched pairs. 38113 records in RAM.
INFO 2026-06-08 09:56:07 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr16:14,941,818
INFO 2026-06-08 09:56:07 MarkDuplicates Tracking 307765 as yet unmatched pairs. 36333 records in RAM.
INFO 2026-06-08 09:56:09 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:15:59s. Time for last 1,000,000: 2s. Last read position: chr16:16,182,366
INFO 2026-06-08 09:56:09 MarkDuplicates Tracking 306072 as yet unmatched pairs. 34634 records in RAM.
INFO 2026-06-08 09:56:11 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:16:01s. Time for last 1,000,000: 1s. Last read position: chr16:16,358,058
INFO 2026-06-08 09:56:11 MarkDuplicates Tracking 306385 as yet unmatched pairs. 34943 records in RAM.
INFO 2026-06-08 09:56:12 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:16:02s. Time for last 1,000,000: 1s. Last read position: chr16:18,379,963
INFO 2026-06-08 09:56:12 MarkDuplicates Tracking 306359 as yet unmatched pairs. 34912 records in RAM.
INFO 2026-06-08 09:56:14 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:16:04s. Time for last 1,000,000: 1s. Last read position: chr16:18,871,369
INFO 2026-06-08 09:56:14 MarkDuplicates Tracking 304106 as yet unmatched pairs. 32659 records in RAM.
INFO 2026-06-08 09:56:16 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr16:21,403,832
INFO 2026-06-08 09:56:16 MarkDuplicates Tracking 302870 as yet unmatched pairs. 31419 records in RAM.
INFO 2026-06-08 09:56:18 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr16:21,834,789
INFO 2026-06-08 09:56:18 MarkDuplicates Tracking 301896 as yet unmatched pairs. 30439 records in RAM.
INFO 2026-06-08 09:56:20 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr16:21,980,553
INFO 2026-06-08 09:56:20 MarkDuplicates Tracking 302313 as yet unmatched pairs. 30854 records in RAM.
INFO 2026-06-08 09:56:21 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,284
INFO 2026-06-08 09:56:21 MarkDuplicates Tracking 301302 as yet unmatched pairs. 29843 records in RAM.
INFO 2026-06-08 09:56:23 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 1s. Last read position: chr16:24,823,578
INFO 2026-06-08 09:56:23 MarkDuplicates Tracking 300267 as yet unmatched pairs. 28798 records in RAM.
INFO 2026-06-08 09:56:25 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 1s. Last read position: chr16:28,537,627
INFO 2026-06-08 09:56:25 MarkDuplicates Tracking 299508 as yet unmatched pairs. 28021 records in RAM.
INFO 2026-06-08 09:56:27 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:16:17s. Time for last 1,000,000: 2s. Last read position: chr16:28,983,877
INFO 2026-06-08 09:56:27 MarkDuplicates Tracking 297448 as yet unmatched pairs. 25949 records in RAM.
INFO 2026-06-08 09:56:29 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr16:29,491,647
INFO 2026-06-08 09:56:29 MarkDuplicates Tracking 298137 as yet unmatched pairs. 26637 records in RAM.
INFO 2026-06-08 09:56:31 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:16:20s. Time for last 1,000,000: 1s. Last read position: chr16:29,987,694
INFO 2026-06-08 09:56:31 MarkDuplicates Tracking 295729 as yet unmatched pairs. 24222 records in RAM.
INFO 2026-06-08 09:56:33 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 2s. Last read position: chr16:30,225,395
INFO 2026-06-08 09:56:33 MarkDuplicates Tracking 293727 as yet unmatched pairs. 22220 records in RAM.
INFO 2026-06-08 09:56:34 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr16:30,665,673
INFO 2026-06-08 09:56:34 MarkDuplicates Tracking 293156 as yet unmatched pairs. 21641 records in RAM.
INFO 2026-06-08 09:56:37 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 2s. Last read position: chr16:31,076,684
INFO 2026-06-08 09:56:37 MarkDuplicates Tracking 291188 as yet unmatched pairs. 19666 records in RAM.
INFO 2026-06-08 09:56:39 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 1s. Last read position: chr16:31,189,784
INFO 2026-06-08 09:56:39 MarkDuplicates Tracking 290165 as yet unmatched pairs. 18643 records in RAM.
INFO 2026-06-08 09:56:41 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:16:31s. Time for last 1,000,000: 2s. Last read position: chr16:47,699,256
INFO 2026-06-08 09:56:41 MarkDuplicates Tracking 288040 as yet unmatched pairs. 16517 records in RAM.
INFO 2026-06-08 09:56:43 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:16:33s. Time for last 1,000,000: 2s. Last read position: chr16:53,314,376
INFO 2026-06-08 09:56:43 MarkDuplicates Tracking 286527 as yet unmatched pairs. 14999 records in RAM.
INFO 2026-06-08 09:56:45 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 1s. Last read position: chr16:57,660,832
INFO 2026-06-08 09:56:45 MarkDuplicates Tracking 285259 as yet unmatched pairs. 13722 records in RAM.
INFO 2026-06-08 09:56:47 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 2s. Last read position: chr16:67,233,735
INFO 2026-06-08 09:56:47 MarkDuplicates Tracking 282847 as yet unmatched pairs. 11306 records in RAM.
INFO 2026-06-08 09:56:49 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr16:69,119,732
INFO 2026-06-08 09:56:49 MarkDuplicates Tracking 281169 as yet unmatched pairs. 9626 records in RAM.
INFO 2026-06-08 09:56:51 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 2s. Last read position: chr16:71,626,312
INFO 2026-06-08 09:56:51 MarkDuplicates Tracking 279630 as yet unmatched pairs. 8078 records in RAM.
INFO 2026-06-08 09:56:53 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 1s. Last read position: chr16:78,022,571
INFO 2026-06-08 09:56:53 MarkDuplicates Tracking 280715 as yet unmatched pairs. 9153 records in RAM.
INFO 2026-06-08 09:56:55 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 2s. Last read position: chr16:84,880,557
INFO 2026-06-08 09:56:55 MarkDuplicates Tracking 276312 as yet unmatched pairs. 4742 records in RAM.
INFO 2026-06-08 09:56:57 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:16:47s. Time for last 1,000,000: 2s. Last read position: chr16:88,656,166
INFO 2026-06-08 09:56:57 MarkDuplicates Tracking 274307 as yet unmatched pairs. 2733 records in RAM.
INFO 2026-06-08 09:56:59 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:16:49s. Time for last 1,000,000: 1s. Last read position: chr16:89,656,694
INFO 2026-06-08 09:56:59 MarkDuplicates Tracking 272425 as yet unmatched pairs. 837 records in RAM.
INFO 2026-06-08 09:57:02 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 3s. Last read position: chr17:1,364,998
INFO 2026-06-08 09:57:02 MarkDuplicates Tracking 275558 as yet unmatched pairs. 92419 records in RAM.
INFO 2026-06-08 09:57:04 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr17:2,373,405
INFO 2026-06-08 09:57:04 MarkDuplicates Tracking 269716 as yet unmatched pairs. 86570 records in RAM.
INFO 2026-06-08 09:57:07 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr17:4,895,163
INFO 2026-06-08 09:57:07 MarkDuplicates Tracking 267776 as yet unmatched pairs. 84625 records in RAM.
INFO 2026-06-08 09:57:09 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:16:59s. Time for last 1,000,000: 2s. Last read position: chr17:7,223,673
INFO 2026-06-08 09:57:09 MarkDuplicates Tracking 266890 as yet unmatched pairs. 83738 records in RAM.
INFO 2026-06-08 09:57:11 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,610
INFO 2026-06-08 09:57:11 MarkDuplicates Tracking 264948 as yet unmatched pairs. 81794 records in RAM.
INFO 2026-06-08 09:57:13 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 2s. Last read position: chr17:8,236,002
INFO 2026-06-08 09:57:13 MarkDuplicates Tracking 263104 as yet unmatched pairs. 79948 records in RAM.
INFO 2026-06-08 09:57:15 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,284
INFO 2026-06-08 09:57:15 MarkDuplicates Tracking 262706 as yet unmatched pairs. 79545 records in RAM.
INFO 2026-06-08 09:57:17 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 2s. Last read position: chr17:18,093,926
INFO 2026-06-08 09:57:17 MarkDuplicates Tracking 259453 as yet unmatched pairs. 76291 records in RAM.
INFO 2026-06-08 09:57:19 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 2s. Last read position: chr17:27,301,857
INFO 2026-06-08 09:57:19 MarkDuplicates Tracking 259366 as yet unmatched pairs. 76199 records in RAM.
INFO 2026-06-08 09:57:21 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:17:11s. Time for last 1,000,000: 1s. Last read position: chr17:28,632,978
INFO 2026-06-08 09:57:21 MarkDuplicates Tracking 258998 as yet unmatched pairs. 75828 records in RAM.
INFO 2026-06-08 09:57:24 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:17:13s. Time for last 1,000,000: 2s. Last read position: chr17:28,758,584
INFO 2026-06-08 09:57:24 MarkDuplicates Tracking 255055 as yet unmatched pairs. 71879 records in RAM.
INFO 2026-06-08 09:57:25 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr17:30,195,642
INFO 2026-06-08 09:57:25 MarkDuplicates Tracking 253032 as yet unmatched pairs. 69855 records in RAM.
INFO 2026-06-08 09:57:28 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 2s. Last read position: chr17:31,973,178
INFO 2026-06-08 09:57:28 MarkDuplicates Tracking 254689 as yet unmatched pairs. 71504 records in RAM.
INFO 2026-06-08 09:57:30 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 2s. Last read position: chr17:35,265,079
INFO 2026-06-08 09:57:30 MarkDuplicates Tracking 250261 as yet unmatched pairs. 67064 records in RAM.
INFO 2026-06-08 09:57:32 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr17:37,205,810
INFO 2026-06-08 09:57:32 MarkDuplicates Tracking 249285 as yet unmatched pairs. 66086 records in RAM.
INFO 2026-06-08 09:57:34 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr17:38,716,748
INFO 2026-06-08 09:57:34 MarkDuplicates Tracking 249012 as yet unmatched pairs. 65806 records in RAM.
INFO 2026-06-08 09:57:36 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:17:26s. Time for last 1,000,000: 1s. Last read position: chr17:39,707,094
INFO 2026-06-08 09:57:36 MarkDuplicates Tracking 252057 as yet unmatched pairs. 68850 records in RAM.
INFO 2026-06-08 09:57:38 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 2s. Last read position: chr17:39,726,947
INFO 2026-06-08 09:57:38 MarkDuplicates Tracking 249258 as yet unmatched pairs. 66051 records in RAM.
INFO 2026-06-08 09:57:40 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 1s. Last read position: chr17:40,399,998
INFO 2026-06-08 09:57:40 MarkDuplicates Tracking 243098 as yet unmatched pairs. 59889 records in RAM.
INFO 2026-06-08 09:57:42 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:17:32s. Time for last 1,000,000: 2s. Last read position: chr17:41,983,571
INFO 2026-06-08 09:57:42 MarkDuplicates Tracking 241380 as yet unmatched pairs. 58169 records in RAM.
INFO 2026-06-08 09:57:44 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:17:34s. Time for last 1,000,000: 2s. Last read position: chr17:43,180,802
INFO 2026-06-08 09:57:44 MarkDuplicates Tracking 239797 as yet unmatched pairs. 56584 records in RAM.
INFO 2026-06-08 09:57:46 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:17:36s. Time for last 1,000,000: 1s. Last read position: chr17:45,232,369
INFO 2026-06-08 09:57:46 MarkDuplicates Tracking 238144 as yet unmatched pairs. 54928 records in RAM.
INFO 2026-06-08 09:57:48 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 2s. Last read position: chr17:47,668,249
INFO 2026-06-08 09:57:48 MarkDuplicates Tracking 237728 as yet unmatched pairs. 54508 records in RAM.
INFO 2026-06-08 10:00:03 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 134s. Last read position: chr17:48,921,223
INFO 2026-06-08 10:00:03 MarkDuplicates Tracking 235137 as yet unmatched pairs. 51912 records in RAM.
INFO 2026-06-08 10:00:05 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:19:55s. Time for last 1,000,000: 2s. Last read position: chr17:50,186,676
INFO 2026-06-08 10:00:05 MarkDuplicates Tracking 238068 as yet unmatched pairs. 54838 records in RAM.
INFO 2026-06-08 10:00:08 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,121
INFO 2026-06-08 10:00:08 MarkDuplicates Tracking 258567 as yet unmatched pairs. 75335 records in RAM.
INFO 2026-06-08 10:00:10 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,480
INFO 2026-06-08 10:00:10 MarkDuplicates Tracking 254257 as yet unmatched pairs. 71025 records in RAM.
INFO 2026-06-08 10:00:12 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:20:02s. Time for last 1,000,000: 2s. Last read position: chr17:50,190,584
INFO 2026-06-08 10:00:12 MarkDuplicates Tracking 237631 as yet unmatched pairs. 54390 records in RAM.
INFO 2026-06-08 10:00:15 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,675
INFO 2026-06-08 10:00:15 MarkDuplicates Tracking 258533 as yet unmatched pairs. 75290 records in RAM.
INFO 2026-06-08 10:00:17 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr17:50,194,406
INFO 2026-06-08 10:00:17 MarkDuplicates Tracking 252697 as yet unmatched pairs. 69454 records in RAM.
INFO 2026-06-08 10:00:19 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 2s. Last read position: chr17:50,195,590
INFO 2026-06-08 10:00:19 MarkDuplicates Tracking 249288 as yet unmatched pairs. 66034 records in RAM.
INFO 2026-06-08 10:00:22 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,644
INFO 2026-06-08 10:00:22 MarkDuplicates Tracking 251604 as yet unmatched pairs. 68350 records in RAM.
INFO 2026-06-08 10:00:24 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,261
INFO 2026-06-08 10:00:24 MarkDuplicates Tracking 238391 as yet unmatched pairs. 55131 records in RAM.
INFO 2026-06-08 10:00:27 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 2s. Last read position: chr17:50,669,256
INFO 2026-06-08 10:00:27 MarkDuplicates Tracking 218322 as yet unmatched pairs. 35059 records in RAM.
INFO 2026-06-08 10:00:29 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 2s. Last read position: chr17:57,873,652
INFO 2026-06-08 10:00:29 MarkDuplicates Tracking 217877 as yet unmatched pairs. 34613 records in RAM.
INFO 2026-06-08 10:00:31 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 2s. Last read position: chr17:59,660,424
INFO 2026-06-08 10:00:31 MarkDuplicates Tracking 220003 as yet unmatched pairs. 36729 records in RAM.
INFO 2026-06-08 10:00:33 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 2s. Last read position: chr17:59,683,115
INFO 2026-06-08 10:00:33 MarkDuplicates Tracking 217075 as yet unmatched pairs. 33800 records in RAM.
INFO 2026-06-08 10:00:35 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 2s. Last read position: chr17:62,536,269
INFO 2026-06-08 10:00:35 MarkDuplicates Tracking 212582 as yet unmatched pairs. 29303 records in RAM.
INFO 2026-06-08 10:00:38 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 2s. Last read position: chr17:64,193,688
INFO 2026-06-08 10:00:38 MarkDuplicates Tracking 210707 as yet unmatched pairs. 27428 records in RAM.
INFO 2026-06-08 10:00:40 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 2s. Last read position: chr17:67,854,294
INFO 2026-06-08 10:00:40 MarkDuplicates Tracking 209747 as yet unmatched pairs. 26464 records in RAM.
INFO 2026-06-08 10:00:42 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 2s. Last read position: chr17:72,649,254
INFO 2026-06-08 10:00:42 MarkDuplicates Tracking 208049 as yet unmatched pairs. 24765 records in RAM.
INFO 2026-06-08 10:00:44 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr17:75,110,239
INFO 2026-06-08 10:00:44 MarkDuplicates Tracking 206072 as yet unmatched pairs. 22788 records in RAM.
INFO 2026-06-08 10:00:47 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 2s. Last read position: chr17:75,629,271
INFO 2026-06-08 10:00:47 MarkDuplicates Tracking 204833 as yet unmatched pairs. 21546 records in RAM.
INFO 2026-06-08 10:00:49 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:20:39s. Time for last 1,000,000: 2s. Last read position: chr17:76,089,294
INFO 2026-06-08 10:00:49 MarkDuplicates Tracking 202888 as yet unmatched pairs. 19599 records in RAM.
INFO 2026-06-08 10:00:51 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 2s. Last read position: chr17:78,120,943
INFO 2026-06-08 10:00:51 MarkDuplicates Tracking 201829 as yet unmatched pairs. 18538 records in RAM.
INFO 2026-06-08 10:00:53 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 2s. Last read position: chr17:78,976,109
INFO 2026-06-08 10:00:53 MarkDuplicates Tracking 202585 as yet unmatched pairs. 19290 records in RAM.
INFO 2026-06-08 10:00:56 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chr17:80,287,947
INFO 2026-06-08 10:00:56 MarkDuplicates Tracking 200656 as yet unmatched pairs. 17359 records in RAM.
INFO 2026-06-08 10:00:58 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 2s. Last read position: chr17:80,368,057
INFO 2026-06-08 10:00:58 MarkDuplicates Tracking 196744 as yet unmatched pairs. 13441 records in RAM.
INFO 2026-06-08 10:01:00 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 2s. Last read position: chr17:81,511,451
INFO 2026-06-08 10:01:00 MarkDuplicates Tracking 196046 as yet unmatched pairs. 12742 records in RAM.
INFO 2026-06-08 10:01:02 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 2s. Last read position: chr17:81,845,975
INFO 2026-06-08 10:01:02 MarkDuplicates Tracking 194405 as yet unmatched pairs. 11083 records in RAM.
INFO 2026-06-08 10:01:04 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 2s. Last read position: chr17:82,030,700
INFO 2026-06-08 10:01:04 MarkDuplicates Tracking 190452 as yet unmatched pairs. 7126 records in RAM.
INFO 2026-06-08 10:01:07 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 2s. Last read position: chr17:82,083,983
INFO 2026-06-08 10:01:07 MarkDuplicates Tracking 195939 as yet unmatched pairs. 12606 records in RAM.
INFO 2026-06-08 10:01:09 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 2s. Last read position: chr17:82,089,248
INFO 2026-06-08 10:01:09 MarkDuplicates Tracking 190704 as yet unmatched pairs. 7369 records in RAM.
INFO 2026-06-08 10:01:11 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 2s. Last read position: chr17:82,444,063
INFO 2026-06-08 10:01:11 MarkDuplicates Tracking 185979 as yet unmatched pairs. 2636 records in RAM.
INFO 2026-06-08 10:01:14 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 2s. Last read position: chr18:6,729,828
INFO 2026-06-08 10:01:14 MarkDuplicates Tracking 182610 as yet unmatched pairs. 8312 records in RAM.
INFO 2026-06-08 10:01:16 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 2s. Last read position: chr18:14,537,873
INFO 2026-06-08 10:01:16 MarkDuplicates Tracking 183822 as yet unmatched pairs. 9518 records in RAM.
INFO 2026-06-08 10:01:18 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 2s. Last read position: chr18:26,052,684
INFO 2026-06-08 10:01:18 MarkDuplicates Tracking 180613 as yet unmatched pairs. 6295 records in RAM.
INFO 2026-06-08 10:01:20 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:21:10s. Time for last 1,000,000: 2s. Last read position: chr18:36,126,877
INFO 2026-06-08 10:01:20 MarkDuplicates Tracking 180731 as yet unmatched pairs. 6405 records in RAM.
INFO 2026-06-08 10:01:22 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:21:12s. Time for last 1,000,000: 2s. Last read position: chr18:54,291,962
INFO 2026-06-08 10:01:22 MarkDuplicates Tracking 176922 as yet unmatched pairs. 2592 records in RAM.
INFO 2026-06-08 10:01:25 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 2s. Last read position: chr18:74,505,916
INFO 2026-06-08 10:01:25 MarkDuplicates Tracking 175346 as yet unmatched pairs. 1016 records in RAM.
INFO 2026-06-08 10:01:27 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 2s. Last read position: chr19:757,340
INFO 2026-06-08 10:01:27 MarkDuplicates Tracking 173680 as yet unmatched pairs. 81396 records in RAM.
INFO 2026-06-08 10:01:30 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 2s. Last read position: chr19:1,116,881
INFO 2026-06-08 10:01:30 MarkDuplicates Tracking 172317 as yet unmatched pairs. 80018 records in RAM.
INFO 2026-06-08 10:01:32 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 2s. Last read position: chr19:1,599,474
INFO 2026-06-08 10:01:32 MarkDuplicates Tracking 170907 as yet unmatched pairs. 78608 records in RAM.
INFO 2026-06-08 10:01:34 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 2s. Last read position: chr19:2,271,754
INFO 2026-06-08 10:01:34 MarkDuplicates Tracking 167637 as yet unmatched pairs. 75337 records in RAM.
INFO 2026-06-08 10:01:37 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 2s. Last read position: chr19:3,730,369
INFO 2026-06-08 10:01:37 MarkDuplicates Tracking 165658 as yet unmatched pairs. 73358 records in RAM.
INFO 2026-06-08 10:01:39 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 2s. Last read position: chr19:5,039,929
INFO 2026-06-08 10:01:39 MarkDuplicates Tracking 163746 as yet unmatched pairs. 71444 records in RAM.
INFO 2026-06-08 10:01:41 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 2s. Last read position: chr19:6,416,372
INFO 2026-06-08 10:01:41 MarkDuplicates Tracking 161521 as yet unmatched pairs. 69219 records in RAM.
INFO 2026-06-08 10:01:44 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 2s. Last read position: chr19:7,870,948
INFO 2026-06-08 10:01:44 MarkDuplicates Tracking 159766 as yet unmatched pairs. 67464 records in RAM.
INFO 2026-06-08 10:01:46 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 2s. Last read position: chr19:10,115,478
INFO 2026-06-08 10:01:46 MarkDuplicates Tracking 158105 as yet unmatched pairs. 65803 records in RAM.
INFO 2026-06-08 10:01:48 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:21:38s. Time for last 1,000,000: 2s. Last read position: chr19:10,984,328
INFO 2026-06-08 10:01:48 MarkDuplicates Tracking 156065 as yet unmatched pairs. 63761 records in RAM.
INFO 2026-06-08 10:01:50 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 2s. Last read position: chr19:12,646,570
INFO 2026-06-08 10:01:50 MarkDuplicates Tracking 154546 as yet unmatched pairs. 62239 records in RAM.
INFO 2026-06-08 10:01:53 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:21:42s. Time for last 1,000,000: 2s. Last read position: chr19:13,751,803
INFO 2026-06-08 10:01:53 MarkDuplicates Tracking 152960 as yet unmatched pairs. 60653 records in RAM.
INFO 2026-06-08 10:01:55 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 2s. Last read position: chr19:14,516,770
INFO 2026-06-08 10:01:55 MarkDuplicates Tracking 153975 as yet unmatched pairs. 61668 records in RAM.
INFO 2026-06-08 10:01:57 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:21:47s. Time for last 1,000,000: 2s. Last read position: chr19:15,265,452
INFO 2026-06-08 10:01:57 MarkDuplicates Tracking 150644 as yet unmatched pairs. 58328 records in RAM.
INFO 2026-06-08 10:01:59 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:21:49s. Time for last 1,000,000: 2s. Last read position: chr19:17,232,447
INFO 2026-06-08 10:01:59 MarkDuplicates Tracking 148248 as yet unmatched pairs. 55929 records in RAM.
INFO 2026-06-08 10:02:01 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:21:51s. Time for last 1,000,000: 2s. Last read position: chr19:18,386,398
INFO 2026-06-08 10:02:01 MarkDuplicates Tracking 145766 as yet unmatched pairs. 53444 records in RAM.
INFO 2026-06-08 10:02:04 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:21:54s. Time for last 1,000,000: 2s. Last read position: chr19:19,180,632
INFO 2026-06-08 10:02:04 MarkDuplicates Tracking 143161 as yet unmatched pairs. 50823 records in RAM.
INFO 2026-06-08 10:02:06 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 2s. Last read position: chr19:32,631,471
INFO 2026-06-08 10:02:06 MarkDuplicates Tracking 142094 as yet unmatched pairs. 49755 records in RAM.
INFO 2026-06-08 10:02:08 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 2s. Last read position: chr19:35,122,918
INFO 2026-06-08 10:02:08 MarkDuplicates Tracking 141217 as yet unmatched pairs. 48878 records in RAM.
INFO 2026-06-08 10:02:11 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:22:00s. Time for last 1,000,000: 2s. Last read position: chr19:35,753,232
INFO 2026-06-08 10:02:11 MarkDuplicates Tracking 137682 as yet unmatched pairs. 45341 records in RAM.
INFO 2026-06-08 10:02:13 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:22:02s. Time for last 1,000,000: 2s. Last read position: chr19:38,264,887
INFO 2026-06-08 10:02:13 MarkDuplicates Tracking 140684 as yet unmatched pairs. 48341 records in RAM.
INFO 2026-06-08 10:02:15 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 2s. Last read position: chr19:38,837,416
INFO 2026-06-08 10:02:15 MarkDuplicates Tracking 136459 as yet unmatched pairs. 44113 records in RAM.
INFO 2026-06-08 10:02:17 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 2s. Last read position: chr19:39,826,726
INFO 2026-06-08 10:02:17 MarkDuplicates Tracking 132989 as yet unmatched pairs. 40643 records in RAM.
INFO 2026-06-08 10:02:19 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chr19:40,582,403
INFO 2026-06-08 10:02:19 MarkDuplicates Tracking 131333 as yet unmatched pairs. 38986 records in RAM.
INFO 2026-06-08 10:02:22 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:22:12s. Time for last 1,000,000: 2s. Last read position: chr19:41,302,791
INFO 2026-06-08 10:02:22 MarkDuplicates Tracking 129450 as yet unmatched pairs. 37099 records in RAM.
INFO 2026-06-08 10:02:24 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:22:14s. Time for last 1,000,000: 2s. Last read position: chr19:42,216,951
INFO 2026-06-08 10:02:24 MarkDuplicates Tracking 127604 as yet unmatched pairs. 35253 records in RAM.
INFO 2026-06-08 10:02:26 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:22:16s. Time for last 1,000,000: 2s. Last read position: chr19:42,293,167
INFO 2026-06-08 10:02:26 MarkDuplicates Tracking 126742 as yet unmatched pairs. 34390 records in RAM.
INFO 2026-06-08 10:02:28 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:22:18s. Time for last 1,000,000: 2s. Last read position: chr19:44,644,094
INFO 2026-06-08 10:02:28 MarkDuplicates Tracking 124526 as yet unmatched pairs. 32169 records in RAM.
INFO 2026-06-08 10:02:31 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:22:20s. Time for last 1,000,000: 2s. Last read position: chr19:44,820,803
INFO 2026-06-08 10:02:31 MarkDuplicates Tracking 128457 as yet unmatched pairs. 36100 records in RAM.
INFO 2026-06-08 10:02:33 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 2s. Last read position: chr19:45,140,270
INFO 2026-06-08 10:02:33 MarkDuplicates Tracking 121005 as yet unmatched pairs. 28648 records in RAM.
INFO 2026-06-08 10:02:35 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 2s. Last read position: chr19:45,786,661
INFO 2026-06-08 10:02:35 MarkDuplicates Tracking 118512 as yet unmatched pairs. 26153 records in RAM.
INFO 2026-06-08 10:02:37 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 2s. Last read position: chr19:46,989,560
INFO 2026-06-08 10:02:37 MarkDuplicates Tracking 117165 as yet unmatched pairs. 24803 records in RAM.
INFO 2026-06-08 10:02:40 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 2s. Last read position: chr19:48,325,541
INFO 2026-06-08 10:02:40 MarkDuplicates Tracking 114377 as yet unmatched pairs. 22015 records in RAM.
INFO 2026-06-08 10:02:42 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 2s. Last read position: chr19:48,913,475
INFO 2026-06-08 10:02:42 MarkDuplicates Tracking 113863 as yet unmatched pairs. 21500 records in RAM.
INFO 2026-06-08 10:02:44 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 2s. Last read position: chr19:49,447,411
INFO 2026-06-08 10:02:44 MarkDuplicates Tracking 111001 as yet unmatched pairs. 18637 records in RAM.
INFO 2026-06-08 10:02:46 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 2s. Last read position: chr19:49,624,898
INFO 2026-06-08 10:02:46 MarkDuplicates Tracking 109494 as yet unmatched pairs. 17130 records in RAM.
INFO 2026-06-08 10:02:49 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:22:38s. Time for last 1,000,000: 2s. Last read position: chr19:49,851,359
INFO 2026-06-08 10:02:49 MarkDuplicates Tracking 108799 as yet unmatched pairs. 16434 records in RAM.
INFO 2026-06-08 10:02:51 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:22:41s. Time for last 1,000,000: 2s. Last read position: chr19:50,309,655
INFO 2026-06-08 10:02:51 MarkDuplicates Tracking 105994 as yet unmatched pairs. 13625 records in RAM.
INFO 2026-06-08 10:02:53 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 2s. Last read position: chr19:52,613,954
INFO 2026-06-08 10:02:53 MarkDuplicates Tracking 104194 as yet unmatched pairs. 11825 records in RAM.
INFO 2026-06-08 10:02:55 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 2s. Last read position: chr19:54,162,672
INFO 2026-06-08 10:02:55 MarkDuplicates Tracking 103894 as yet unmatched pairs. 11525 records in RAM.
INFO 2026-06-08 10:02:58 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:22:47s. Time for last 1,000,000: 2s. Last read position: chr19:54,456,733
INFO 2026-06-08 10:02:58 MarkDuplicates Tracking 105008 as yet unmatched pairs. 12636 records in RAM.
INFO 2026-06-08 10:03:00 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:22:50s. Time for last 1,000,000: 2s. Last read position: chr19:55,346,515
INFO 2026-06-08 10:03:00 MarkDuplicates Tracking 99507 as yet unmatched pairs. 7130 records in RAM.
INFO 2026-06-08 10:03:02 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:22:52s. Time for last 1,000,000: 2s. Last read position: chr19:55,691,997
INFO 2026-06-08 10:03:02 MarkDuplicates Tracking 97969 as yet unmatched pairs. 5588 records in RAM.
INFO 2026-06-08 10:03:04 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 2s. Last read position: chr19:57,813,282
INFO 2026-06-08 10:03:04 MarkDuplicates Tracking 97624 as yet unmatched pairs. 5243 records in RAM.
INFO 2026-06-08 10:03:06 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 1s. Last read position: chr19:57,933,753
INFO 2026-06-08 10:03:06 MarkDuplicates Tracking 93955 as yet unmatched pairs. 1572 records in RAM.
INFO 2026-06-08 10:03:09 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 2s. Last read position: chr20:1,164,328
INFO 2026-06-08 10:03:09 MarkDuplicates Tracking 92065 as yet unmatched pairs. 26194 records in RAM.
INFO 2026-06-08 10:03:11 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 2s. Last read position: chr20:3,923,313
INFO 2026-06-08 10:03:11 MarkDuplicates Tracking 90183 as yet unmatched pairs. 24312 records in RAM.
INFO 2026-06-08 10:03:13 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 2s. Last read position: chr20:17,975,881
INFO 2026-06-08 10:03:13 MarkDuplicates Tracking 88638 as yet unmatched pairs. 22760 records in RAM.
INFO 2026-06-08 10:03:15 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:23:05s. Time for last 1,000,000: 2s. Last read position: chr20:25,221,371
INFO 2026-06-08 10:03:15 MarkDuplicates Tracking 87208 as yet unmatched pairs. 21329 records in RAM.
INFO 2026-06-08 10:03:17 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:23:07s. Time for last 1,000,000: 2s. Last read position: chr20:33,619,516
INFO 2026-06-08 10:03:17 MarkDuplicates Tracking 85557 as yet unmatched pairs. 19670 records in RAM.
INFO 2026-06-08 10:03:20 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 2s. Last read position: chr20:35,509,997
INFO 2026-06-08 10:03:20 MarkDuplicates Tracking 83807 as yet unmatched pairs. 17920 records in RAM.
INFO 2026-06-08 10:03:22 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:23:12s. Time for last 1,000,000: 2s. Last read position: chr20:36,862,742
INFO 2026-06-08 10:03:22 MarkDuplicates Tracking 82078 as yet unmatched pairs. 16191 records in RAM.
INFO 2026-06-08 10:03:24 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:23:14s. Time for last 1,000,000: 2s. Last read position: chr20:41,484,355
INFO 2026-06-08 10:03:24 MarkDuplicates Tracking 80634 as yet unmatched pairs. 14743 records in RAM.
INFO 2026-06-08 10:03:27 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:23:16s. Time for last 1,000,000: 2s. Last read position: chr20:45,843,579
INFO 2026-06-08 10:03:27 MarkDuplicates Tracking 78719 as yet unmatched pairs. 12820 records in RAM.
INFO 2026-06-08 10:03:29 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:23:18s. Time for last 1,000,000: 2s. Last read position: chr20:49,025,347
INFO 2026-06-08 10:03:29 MarkDuplicates Tracking 77082 as yet unmatched pairs. 11181 records in RAM.
INFO 2026-06-08 10:03:31 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:23:21s. Time for last 1,000,000: 2s. Last read position: chr20:53,576,154
INFO 2026-06-08 10:03:31 MarkDuplicates Tracking 75889 as yet unmatched pairs. 9986 records in RAM.
INFO 2026-06-08 10:03:33 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:23:23s. Time for last 1,000,000: 2s. Last read position: chr20:58,903,552
INFO 2026-06-08 10:03:33 MarkDuplicates Tracking 76684 as yet unmatched pairs. 10781 records in RAM.
INFO 2026-06-08 10:03:35 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:23:25s. Time for last 1,000,000: 2s. Last read position: chr20:62,309,281
INFO 2026-06-08 10:03:35 MarkDuplicates Tracking 73756 as yet unmatched pairs. 7852 records in RAM.
INFO 2026-06-08 10:03:38 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:23:28s. Time for last 1,000,000: 2s. Last read position: chr20:62,353,237
INFO 2026-06-08 10:03:38 MarkDuplicates Tracking 71516 as yet unmatched pairs. 5611 records in RAM.
INFO 2026-06-08 10:03:40 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:23:30s. Time for last 1,000,000: 2s. Last read position: chr20:63,560,300
INFO 2026-06-08 10:03:40 MarkDuplicates Tracking 68165 as yet unmatched pairs. 2259 records in RAM.
INFO 2026-06-08 10:03:42 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:23:32s. Time for last 1,000,000: 2s. Last read position: chr21:5,117,097
INFO 2026-06-08 10:03:42 MarkDuplicates Tracking 65991 as yet unmatched pairs. 12515 records in RAM.
INFO 2026-06-08 10:03:44 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:23:34s. Time for last 1,000,000: 1s. Last read position: chr21:8,400,294
INFO 2026-06-08 10:03:44 MarkDuplicates Tracking 65244 as yet unmatched pairs. 11765 records in RAM.
INFO 2026-06-08 10:03:46 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:23:36s. Time for last 1,000,000: 1s. Last read position: chr21:26,170,567
INFO 2026-06-08 10:03:46 MarkDuplicates Tracking 64706 as yet unmatched pairs. 11225 records in RAM.
INFO 2026-06-08 10:03:48 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:23:38s. Time for last 1,000,000: 2s. Last read position: chr21:33,552,855
INFO 2026-06-08 10:03:48 MarkDuplicates Tracking 63739 as yet unmatched pairs. 10253 records in RAM.
INFO 2026-06-08 10:03:50 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:23:40s. Time for last 1,000,000: 2s. Last read position: chr21:36,936,844
INFO 2026-06-08 10:03:50 MarkDuplicates Tracking 61271 as yet unmatched pairs. 7785 records in RAM.
INFO 2026-06-08 10:03:52 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:23:42s. Time for last 1,000,000: 2s. Last read position: chr21:39,348,929
INFO 2026-06-08 10:03:52 MarkDuplicates Tracking 59321 as yet unmatched pairs. 5834 records in RAM.
INFO 2026-06-08 10:03:55 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:23:45s. Time for last 1,000,000: 2s. Last read position: chr21:43,791,371
INFO 2026-06-08 10:03:55 MarkDuplicates Tracking 57548 as yet unmatched pairs. 4057 records in RAM.
INFO 2026-06-08 10:03:57 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:23:47s. Time for last 1,000,000: 2s. Last read position: chr21:45,981,856
INFO 2026-06-08 10:03:57 MarkDuplicates Tracking 57049 as yet unmatched pairs. 3557 records in RAM.
INFO 2026-06-08 10:03:59 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:23:49s. Time for last 1,000,000: 2s. Last read position: chr21:46,459,099
INFO 2026-06-08 10:03:59 MarkDuplicates Tracking 54549 as yet unmatched pairs. 1057 records in RAM.
INFO 2026-06-08 10:04:01 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:23:51s. Time for last 1,000,000: 2s. Last read position: chr22:20,446,470
INFO 2026-06-08 10:04:01 MarkDuplicates Tracking 52030 as yet unmatched pairs. 21750 records in RAM.
INFO 2026-06-08 10:04:04 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:23:54s. Time for last 1,000,000: 2s. Last read position: chr22:23,292,579
INFO 2026-06-08 10:04:04 MarkDuplicates Tracking 50750 as yet unmatched pairs. 20469 records in RAM.
INFO 2026-06-08 10:04:06 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:23:56s. Time for last 1,000,000: 2s. Last read position: chr22:26,560,970
INFO 2026-06-08 10:04:06 MarkDuplicates Tracking 48425 as yet unmatched pairs. 18137 records in RAM.
INFO 2026-06-08 10:04:08 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:23:58s. Time for last 1,000,000: 2s. Last read position: chr22:29,125,336
INFO 2026-06-08 10:04:08 MarkDuplicates Tracking 46952 as yet unmatched pairs. 16654 records in RAM.
INFO 2026-06-08 10:04:10 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:24:00s. Time for last 1,000,000: 2s. Last read position: chr22:29,694,784
INFO 2026-06-08 10:04:10 MarkDuplicates Tracking 45219 as yet unmatched pairs. 14921 records in RAM.
INFO 2026-06-08 10:04:13 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:24:03s. Time for last 1,000,000: 2s. Last read position: chr22:33,626,271
INFO 2026-06-08 10:04:13 MarkDuplicates Tracking 43610 as yet unmatched pairs. 13312 records in RAM.
INFO 2026-06-08 10:04:15 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:24:05s. Time for last 1,000,000: 2s. Last read position: chr22:37,232,834
INFO 2026-06-08 10:04:15 MarkDuplicates Tracking 41731 as yet unmatched pairs. 11433 records in RAM.
INFO 2026-06-08 10:04:17 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:24:07s. Time for last 1,000,000: 2s. Last read position: chr22:38,726,282
INFO 2026-06-08 10:04:17 MarkDuplicates Tracking 40114 as yet unmatched pairs. 9816 records in RAM.
INFO 2026-06-08 10:04:19 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:24:09s. Time for last 1,000,000: 2s. Last read position: chr22:41,205,346
INFO 2026-06-08 10:04:19 MarkDuplicates Tracking 38424 as yet unmatched pairs. 8123 records in RAM.
INFO 2026-06-08 10:04:22 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:24:11s. Time for last 1,000,000: 2s. Last read position: chr22:44,187,846
INFO 2026-06-08 10:04:22 MarkDuplicates Tracking 36729 as yet unmatched pairs. 6428 records in RAM.
INFO 2026-06-08 10:04:24 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:24:14s. Time for last 1,000,000: 2s. Last read position: chr22:46,535,284
INFO 2026-06-08 10:04:24 MarkDuplicates Tracking 36492 as yet unmatched pairs. 6188 records in RAM.
INFO 2026-06-08 10:04:26 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 2s. Last read position: chr22:50,288,767
INFO 2026-06-08 10:04:26 MarkDuplicates Tracking 33857 as yet unmatched pairs. 3551 records in RAM.
INFO 2026-06-08 10:04:28 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 2s. Last read position: chr22:50,721,024
INFO 2026-06-08 10:04:28 MarkDuplicates Tracking 31003 as yet unmatched pairs. 697 records in RAM.
INFO 2026-06-08 10:04:31 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:24:21s. Time for last 1,000,000: 2s. Last read position: chrX:9,684,048
INFO 2026-06-08 10:04:31 MarkDuplicates Tracking 29300 as yet unmatched pairs. 25839 records in RAM.
INFO 2026-06-08 10:04:33 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 2s. Last read position: chrX:19,542,000
INFO 2026-06-08 10:04:33 MarkDuplicates Tracking 27652 as yet unmatched pairs. 24188 records in RAM.
INFO 2026-06-08 10:04:35 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:24:25s. Time for last 1,000,000: 2s. Last read position: chrX:40,073,299
INFO 2026-06-08 10:04:35 MarkDuplicates Tracking 27115 as yet unmatched pairs. 23651 records in RAM.
INFO 2026-06-08 10:04:37 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:24:27s. Time for last 1,000,000: 2s. Last read position: chrX:46,758,732
INFO 2026-06-08 10:04:37 MarkDuplicates Tracking 24905 as yet unmatched pairs. 21439 records in RAM.
INFO 2026-06-08 10:04:40 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:24:30s. Time for last 1,000,000: 2s. Last read position: chrX:48,818,217
INFO 2026-06-08 10:04:40 MarkDuplicates Tracking 23260 as yet unmatched pairs. 19794 records in RAM.
INFO 2026-06-08 10:04:42 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 2s. Last read position: chrX:51,900,188
INFO 2026-06-08 10:04:42 MarkDuplicates Tracking 21994 as yet unmatched pairs. 18528 records in RAM.
INFO 2026-06-08 10:04:44 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:24:34s. Time for last 1,000,000: 2s. Last read position: chrX:53,583,753
INFO 2026-06-08 10:04:44 MarkDuplicates Tracking 20391 as yet unmatched pairs. 16925 records in RAM.
INFO 2026-06-08 10:04:46 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:24:36s. Time for last 1,000,000: 2s. Last read position: chrX:57,135,943
INFO 2026-06-08 10:04:46 MarkDuplicates Tracking 18685 as yet unmatched pairs. 15219 records in RAM.
INFO 2026-06-08 10:04:48 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:24:38s. Time for last 1,000,000: 2s. Last read position: chrX:71,303,868
INFO 2026-06-08 10:04:48 MarkDuplicates Tracking 16568 as yet unmatched pairs. 13102 records in RAM.
INFO 2026-06-08 10:04:51 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:24:41s. Time for last 1,000,000: 2s. Last read position: chrX:77,600,395
INFO 2026-06-08 10:04:51 MarkDuplicates Tracking 15586 as yet unmatched pairs. 12120 records in RAM.
INFO 2026-06-08 10:04:53 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:24:43s. Time for last 1,000,000: 2s. Last read position: chrX:101,391,521
INFO 2026-06-08 10:04:53 MarkDuplicates Tracking 14814 as yet unmatched pairs. 11348 records in RAM.
INFO 2026-06-08 10:04:55 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:24:45s. Time for last 1,000,000: 2s. Last read position: chrX:111,708,071
INFO 2026-06-08 10:04:55 MarkDuplicates Tracking 12368 as yet unmatched pairs. 8902 records in RAM.
INFO 2026-06-08 10:04:57 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:24:47s. Time for last 1,000,000: 2s. Last read position: chrX:129,810,904
INFO 2026-06-08 10:04:57 MarkDuplicates Tracking 11001 as yet unmatched pairs. 7535 records in RAM.
INFO 2026-06-08 10:05:00 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:24:49s. Time for last 1,000,000: 2s. Last read position: chrX:150,727,214
INFO 2026-06-08 10:05:00 MarkDuplicates Tracking 9402 as yet unmatched pairs. 5936 records in RAM.
INFO 2026-06-08 10:05:02 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:24:52s. Time for last 1,000,000: 2s. Last read position: chrX:153,910,017
INFO 2026-06-08 10:05:02 MarkDuplicates Tracking 7823 as yet unmatched pairs. 4357 records in RAM.
INFO 2026-06-08 10:05:04 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:24:54s. Time for last 1,000,000: 2s. Last read position: chrX:154,364,681
INFO 2026-06-08 10:05:04 MarkDuplicates Tracking 6718 as yet unmatched pairs. 3252 records in RAM.
INFO 2026-06-08 10:05:06 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:24:56s. Time for last 1,000,000: 2s. Last read position: chrX:154,562,929
INFO 2026-06-08 10:05:06 MarkDuplicates Tracking 4013 as yet unmatched pairs. 547 records in RAM.
INFO 2026-06-08 10:05:08 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:24:58s. Time for last 1,000,000: 1s. Last read position: GL000220.1:154,401
INFO 2026-06-08 10:05:08 MarkDuplicates Tracking 2553 as yet unmatched pairs. 22 records in RAM.
INFO 2026-06-08 10:05:10 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:24:59s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,091
INFO 2026-06-08 10:05:10 MarkDuplicates Tracking 69 as yet unmatched pairs. 31 records in RAM.
INFO 2026-06-08 10:05:10 MarkDuplicates Read 634280796 records. 0 pairs never matched.
INFO 2026-06-08 10:05:56 MarkDuplicates After buildSortedReadEndLists freeMemory: 58509362600; totalMemory: 83550535680; maxMemory: 127137742848
INFO 2026-06-08 10:05:56 MarkDuplicates Will retain up to 2147483642 duplicate indices before spilling to disk.
INFO 2026-06-08 10:06:01 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 10:06:29 OpticalDuplicateFinder Large duplicate set. size = 1294
INFO 2026-06-08 10:06:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,015
INFO 2026-06-08 10:06:36 OpticalDuplicateFinder Large duplicate set. size = 1058
INFO 2026-06-08 10:06:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,166
INFO 2026-06-08 10:06:58 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 10:06:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,956
INFO 2026-06-08 10:07:26 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 10:07:26 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 10:08:48 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 10:08:50 MarkDuplicates After generateDuplicateIndexes freeMemory: 203987592; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 10:08:50 MarkDuplicates Marking 310207365 records as duplicates.
INFO 2026-06-08 10:08:50 MarkDuplicates Found 21342683 optical duplicate clusters.
INFO 2026-06-08 10:08:51 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 10:09:08 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:28,743,707
INFO 2026-06-08 10:09:24 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:102,962,738
INFO 2026-06-08 10:09:41 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:149,887,155
INFO 2026-06-08 10:09:57 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:06s. Time for last 10,000,000: 16s. Last read position: chr1:156,050,479
INFO 2026-06-08 10:10:14 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:23s. Time for last 10,000,000: 16s. Last read position: chr1:186,346,247
INFO 2026-06-08 10:10:31 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:40s. Time for last 10,000,000: 16s. Last read position: chr1:234,430,051
INFO 2026-06-08 10:10:47 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:56s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,260
INFO 2026-06-08 10:11:04 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:13s. Time for last 10,000,000: 16s. Last read position: chr2:74,369,152
INFO 2026-06-08 10:11:21 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:30s. Time for last 10,000,000: 16s. Last read position: chr2:127,651,667
INFO 2026-06-08 10:11:38 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:47s. Time for last 10,000,000: 17s. Last read position: chr2:203,391,075
INFO 2026-06-08 10:11:54 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:03s. Time for last 10,000,000: 16s. Last read position: chr2:215,433,337
INFO 2026-06-08 10:12:12 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:20s. Time for last 10,000,000: 17s. Last read position: chr3:16,270,978
INFO 2026-06-08 10:12:29 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:38s. Time for last 10,000,000: 17s. Last read position: chr3:52,522,041
INFO 2026-06-08 10:12:46 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:55s. Time for last 10,000,000: 17s. Last read position: chr3:149,129,922
INFO 2026-06-08 10:13:03 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:12s. Time for last 10,000,000: 17s. Last read position: chr4:6,863,505
INFO 2026-06-08 10:13:20 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:29s. Time for last 10,000,000: 17s. Last read position: chr4:150,607,879
INFO 2026-06-08 10:13:37 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:46s. Time for last 10,000,000: 17s. Last read position: chr5:73,752,970
INFO 2026-06-08 10:13:54 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:03s. Time for last 10,000,000: 17s. Last read position: chr5:141,189,277
INFO 2026-06-08 10:14:11 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:20s. Time for last 10,000,000: 16s. Last read position: chr5:177,460,485
INFO 2026-06-08 10:14:28 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:37s. Time for last 10,000,000: 16s. Last read position: chr6:30,660,118
INFO 2026-06-08 10:14:44 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:53s. Time for last 10,000,000: 16s. Last read position: chr6:36,978,078
INFO 2026-06-08 10:15:01 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:10s. Time for last 10,000,000: 17s. Last read position: chr6:136,275,555
INFO 2026-06-08 10:15:18 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:27s. Time for last 10,000,000: 16s. Last read position: chr7:5,361,593
INFO 2026-06-08 10:15:35 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:44s. Time for last 10,000,000: 16s. Last read position: chr7:44,885,025
INFO 2026-06-08 10:15:52 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:01s. Time for last 10,000,000: 16s. Last read position: chr7:100,374,353
INFO 2026-06-08 10:16:09 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:18s. Time for last 10,000,000: 16s. Last read position: chr7:152,816,575
INFO 2026-06-08 10:16:26 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:35s. Time for last 10,000,000: 17s. Last read position: chr8:89,786,612
INFO 2026-06-08 10:16:42 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:51s. Time for last 10,000,000: 16s. Last read position: chr8:144,243,377
INFO 2026-06-08 10:16:59 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:08s. Time for last 10,000,000: 16s. Last read position: chr9:124,321,461
INFO 2026-06-08 10:17:15 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:24s. Time for last 10,000,000: 16s. Last read position: chr10:3,149,673
INFO 2026-06-08 10:17:31 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:40s. Time for last 10,000,000: 16s. Last read position: chr10:43,387,328
INFO 2026-06-08 10:17:48 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:57s. Time for last 10,000,000: 16s. Last read position: chr10:119,917,984
INFO 2026-06-08 10:18:04 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:13s. Time for last 10,000,000: 16s. Last read position: chr11:1,761,407
INFO 2026-06-08 10:18:21 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:30s. Time for last 10,000,000: 16s. Last read position: chr11:57,801,757
INFO 2026-06-08 10:18:37 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:46s. Time for last 10,000,000: 16s. Last read position: chr11:70,326,749
INFO 2026-06-08 10:18:53 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:02s. Time for last 10,000,000: 16s. Last read position: chr12:2,861,221
INFO 2026-06-08 10:19:10 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 16s. Last read position: chr12:51,377,232
INFO 2026-06-08 10:19:26 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:35s. Time for last 10,000,000: 16s. Last read position: chr12:91,158,388
INFO 2026-06-08 10:19:43 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 16s. Last read position: chr13:18,298,319
INFO 2026-06-08 10:19:59 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 16s. Last read position: chr14:24,182,094
INFO 2026-06-08 10:20:16 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 16s. Last read position: chr14:102,208,763
INFO 2026-06-08 10:20:32 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:41s. Time for last 10,000,000: 16s. Last read position: chr15:48,153,811
INFO 2026-06-08 10:20:49 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:58s. Time for last 10,000,000: 16s. Last read position: chr15:82,539,982
INFO 2026-06-08 10:21:05 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:14s. Time for last 10,000,000: 16s. Last read position: chr16:2,761,570
INFO 2026-06-08 10:21:21 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:30s. Time for last 10,000,000: 16s. Last read position: chr16:18,871,369
INFO 2026-06-08 10:21:38 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:47s. Time for last 10,000,000: 16s. Last read position: chr16:30,225,395
INFO 2026-06-08 10:21:54 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:03s. Time for last 10,000,000: 16s. Last read position: chr16:78,022,571
INFO 2026-06-08 10:22:11 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:20s. Time for last 10,000,000: 16s. Last read position: chr17:16,382,284
INFO 2026-06-08 10:22:27 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 16s. Last read position: chr17:39,707,094
INFO 2026-06-08 10:22:43 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 16s. Last read position: chr17:50,189,480
INFO 2026-06-08 10:23:00 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:09s. Time for last 10,000,000: 16s. Last read position: chr17:59,683,115
INFO 2026-06-08 10:23:16 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:25s. Time for last 10,000,000: 16s. Last read position: chr17:80,287,947
INFO 2026-06-08 10:23:33 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:42s. Time for last 10,000,000: 16s. Last read position: chr18:26,052,684
INFO 2026-06-08 10:23:50 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:59s. Time for last 10,000,000: 16s. Last read position: chr19:6,416,372
INFO 2026-06-08 10:24:06 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 16s. Last read position: chr19:19,180,632
INFO 2026-06-08 10:24:23 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:32s. Time for last 10,000,000: 16s. Last read position: chr19:42,293,167
INFO 2026-06-08 10:24:39 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:48s. Time for last 10,000,000: 16s. Last read position: chr19:49,851,359
INFO 2026-06-08 10:24:56 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:05s. Time for last 10,000,000: 16s. Last read position: chr20:3,923,313
INFO 2026-06-08 10:25:12 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:21s. Time for last 10,000,000: 16s. Last read position: chr20:58,903,552
INFO 2026-06-08 10:25:28 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:37s. Time for last 10,000,000: 16s. Last read position: chr21:43,791,371
INFO 2026-06-08 10:25:45 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:54s. Time for last 10,000,000: 16s. Last read position: chr22:38,726,282
INFO 2026-06-08 10:26:01 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:10s. Time for last 10,000,000: 16s. Last read position: chrX:48,818,217
INFO 2026-06-08 10:26:17 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:26s. Time for last 10,000,000: 16s. Last read position: chrX:153,910,017
INFO 2026-06-08 10:26:32 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 10:26:32 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 10:26:32 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 10:26:32 MarkDuplicates Before output close freeMemory: 203933520; totalMemory: 234881024; maxMemory: 127137742848
INFO 2026-06-08 10:26:32 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 10:26:32 MarkDuplicates After output close freeMemory: 104190016; totalMemory: 134217728; maxMemory: 127137742848
[Mon Jun 08 10:26:32 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 46.43 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory