Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-2905df-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-2905df-R1_A23WJ53LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:48:40.265 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:48:40 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-2905df-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-2905df-R1_A23WJ53LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:48:40 GMT 2026] Executing as ?@nf-d96559dd28975b738bbd9f197b7fb8dc-8e2be-c87xm on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:48:40 MarkDuplicates Start of doWork freeMemory: 105828216; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:48:40 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:48:40 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:48:44 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,395,493
INFO 2026-06-08 08:48:44 MarkDuplicates Tracking 2185 as yet unmatched pairs. 325 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 2s. Last read position: chr1:2,559,912
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 10807 as yet unmatched pairs. 6994 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 3s. Last read position: chr1:6,541,927
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 6032 as yet unmatched pairs. 244 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:9,731,221
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 8255 as yet unmatched pairs. 620 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 2s. Last read position: chr1:11,823,682
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 9769 as yet unmatched pairs. 319 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:15,931,158
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 11930 as yet unmatched pairs. 687 records in RAM.
INFO 2026-06-08 08:49:00 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 2s. Last read position: chr1:19,114,848
INFO 2026-06-08 08:49:00 MarkDuplicates Tracking 13667 as yet unmatched pairs. 720 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:21,613,639
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 14900 as yet unmatched pairs. 295 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 2s. Last read position: chr1:22,639,424
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 21253 as yet unmatched pairs. 4827 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:23,794,475
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 18985 as yet unmatched pairs. 789 records in RAM.
INFO 2026-06-08 08:49:09 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 3s. Last read position: chr1:26,318,021
INFO 2026-06-08 08:49:09 MarkDuplicates Tracking 20136 as yet unmatched pairs. 234 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:28,038,895
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 22562 as yet unmatched pairs. 797 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 2s. Last read position: chr1:31,684,834
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 24217 as yet unmatched pairs. 723 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:33,021,426
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 26785 as yet unmatched pairs. 1533 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 2s. Last read position: chr1:36,282,594
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 28608 as yet unmatched pairs. 1552 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:39,439,381
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 29613 as yet unmatched pairs. 789 records in RAM.
INFO 2026-06-08 08:49:21 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:42,693,493
INFO 2026-06-08 08:49:21 MarkDuplicates Tracking 31427 as yet unmatched pairs. 919 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 2s. Last read position: chr1:44,776,673
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 44054 as yet unmatched pairs. 11791 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:49,730,706
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 33994 as yet unmatched pairs. 63 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:54,875,103
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 35947 as yet unmatched pairs. 372 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:67,413,149
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 38161 as yet unmatched pairs. 973 records in RAM.
INFO 2026-06-08 08:49:30 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:87,103,465
INFO 2026-06-08 08:49:30 MarkDuplicates Tracking 39011 as yet unmatched pairs. 369 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:96,678,898
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 40945 as yet unmatched pairs. 708 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 2s. Last read position: chr1:109,252,730
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 43365 as yet unmatched pairs. 1554 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:109,668,928
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 45089 as yet unmatched pairs. 1344 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 1s. Last read position: chr1:112,689,885
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 46762 as yet unmatched pairs. 1415 records in RAM.
INFO 2026-06-08 08:49:40 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:114,718,654
INFO 2026-06-08 08:49:40 MarkDuplicates Tracking 49467 as yet unmatched pairs. 2396 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:116,390,846
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 53209 as yet unmatched pairs. 4652 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 2s. Last read position: chr1:116,603,894
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 54230 as yet unmatched pairs. 3944 records in RAM.
INFO 2026-06-08 08:49:47 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:119,916,536
INFO 2026-06-08 08:49:47 MarkDuplicates Tracking 55010 as yet unmatched pairs. 3015 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 2s. Last read position: chr1:119,969,671
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 55463 as yet unmatched pairs. 1784 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:121,382,827
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 55956 as yet unmatched pairs. 1415 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr1:145,856,091
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 55937 as yet unmatched pairs. 544 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:146,164,776
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 58552 as yet unmatched pairs. 2034 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:148,550,385
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 58156 as yet unmatched pairs. 728 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:149,478,807
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 58722 as yet unmatched pairs. 632 records in RAM.
INFO 2026-06-08 08:49:57 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:149,971,099
INFO 2026-06-08 08:49:57 MarkDuplicates Tracking 60459 as yet unmatched pairs. 1142 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:150,579,271
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 63244 as yet unmatched pairs. 2244 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:18s. Time for last 1,000,000: 1s. Last read position: chr1:151,298,780
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 63519 as yet unmatched pairs. 878 records in RAM.
INFO 2026-06-08 08:50:02 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 1s. Last read position: chr1:152,213,992
INFO 2026-06-08 08:50:02 MarkDuplicates Tracking 67124 as yet unmatched pairs. 3086 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:152,216,974
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 65971 as yet unmatched pairs. 1073 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:153,638,200
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 67330 as yet unmatched pairs. 1039 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:153,967,844
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 68286 as yet unmatched pairs. 85 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:154,234,596
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 69816 as yet unmatched pairs. 262 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 1s. Last read position: chr1:154,601,833
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 73868 as yet unmatched pairs. 2582 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:155,237,490
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 73559 as yet unmatched pairs. 535 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 2s. Last read position: chr1:155,661,356
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 75987 as yet unmatched pairs. 1373 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:34s. Time for last 1,000,000: 1s. Last read position: chr1:156,054,841
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 76530 as yet unmatched pairs. 422 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:156,136,243
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 80708 as yet unmatched pairs. 2160 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 2s. Last read position: chr1:156,293,014
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 83927 as yet unmatched pairs. 3523 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 2s. Last read position: chr1:156,669,504
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 84158 as yet unmatched pairs. 1952 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 1s. Last read position: chr1:156,936,856
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 84878 as yet unmatched pairs. 628 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:159,049,489
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 87724 as yet unmatched pairs. 1911 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr1:160,307,180
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 89402 as yet unmatched pairs. 1799 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:161,209,556
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 90374 as yet unmatched pairs. 1142 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:162,498,070
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 92670 as yet unmatched pairs. 1945 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:52s. Time for last 1,000,000: 1s. Last read position: chr1:169,470,080
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 93224 as yet unmatched pairs. 737 records in RAM.
INFO 2026-06-08 08:50:36 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:171,784,001
INFO 2026-06-08 08:50:36 MarkDuplicates Tracking 94580 as yet unmatched pairs. 698 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:179,131,333
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 96411 as yet unmatched pairs. 800 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr1:182,866,574
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 99201 as yet unmatched pairs. 1970 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:00s. Time for last 1,000,000: 1s. Last read position: chr1:185,923,436
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 100156 as yet unmatched pairs. 1195 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 3s. Last read position: chr1:186,318,464
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 104164 as yet unmatched pairs. 3691 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr1:186,353,698
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 105511 as yet unmatched pairs. 3759 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr1:200,409,136
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 104053 as yet unmatched pairs. 885 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 1s. Last read position: chr1:202,333,538
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 105262 as yet unmatched pairs. 401 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr1:203,829,834
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 109128 as yet unmatched pairs. 2712 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr1:205,529,337
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 108473 as yet unmatched pairs. 467 records in RAM.
INFO 2026-06-08 08:50:56 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr1:207,752,229
INFO 2026-06-08 08:50:56 MarkDuplicates Tracking 112475 as yet unmatched pairs. 3102 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:16s. Time for last 1,000,000: 1s. Last read position: chr1:214,397,924
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 112287 as yet unmatched pairs. 1192 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr1:222,676,193
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 113771 as yet unmatched pairs. 1117 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr1:225,554,922
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 114929 as yet unmatched pairs. 698 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr1:226,736,952
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 118825 as yet unmatched pairs. 2761 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr1:228,246,654
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 118141 as yet unmatched pairs. 228 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr1:231,336,359
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 120466 as yet unmatched pairs. 475 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr1:235,342,071
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 122553 as yet unmatched pairs. 480 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 2s. Last read position: chr1:235,792,108
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 126293 as yet unmatched pairs. 2633 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 2s. Last read position: chr1:236,205,092
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 128522 as yet unmatched pairs. 3175 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr1:243,563,765
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 130220 as yet unmatched pairs. 3355 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr1:246,647,955
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 129248 as yet unmatched pairs. 730 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 2s. Last read position: chr2:8,747,928
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 131138 as yet unmatched pairs. 129907 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:12,724,595
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 133666 as yet unmatched pairs. 132399 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:24,083,017
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 134037 as yet unmatched pairs. 132738 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr2:26,254,292
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 137113 as yet unmatched pairs. 135787 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:27,381,538
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 137487 as yet unmatched pairs. 136145 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 2s. Last read position: chr2:32,116,119
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 139026 as yet unmatched pairs. 137655 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 184712 as yet unmatched pairs. 133191 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,265
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 801088 as yet unmatched pairs. 67122 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 864911 as yet unmatched pairs. 60580 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 1s. Last read position: chr2:37,279,775
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 918141 as yet unmatched pairs. 55757 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:43,231,058
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 915463 as yet unmatched pairs. 53057 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 2s. Last read position: chr2:46,382,545
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 913421 as yet unmatched pairs. 50991 records in RAM.
INFO 2026-06-08 08:51:47 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 3s. Last read position: chr2:54,631,075
INFO 2026-06-08 08:51:47 MarkDuplicates Tracking 913181 as yet unmatched pairs. 50736 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr2:55,519,840
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 910534 as yet unmatched pairs. 48077 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr2:62,979,319
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 908963 as yet unmatched pairs. 46491 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr2:70,088,090
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 909420 as yet unmatched pairs. 46921 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr2:73,850,381
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 906014 as yet unmatched pairs. 43481 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:75,655,099
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 903974 as yet unmatched pairs. 41428 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:86,099,984
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 902422 as yet unmatched pairs. 39863 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr2:88,857,372
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 902442 as yet unmatched pairs. 39878 records in RAM.
INFO 2026-06-08 08:52:03 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 2s. Last read position: chr2:96,550,572
INFO 2026-06-08 08:52:03 MarkDuplicates Tracking 899246 as yet unmatched pairs. 36664 records in RAM.
INFO 2026-06-08 08:52:05 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:99,429,939
INFO 2026-06-08 08:52:05 MarkDuplicates Tracking 897640 as yet unmatched pairs. 35027 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:105,855,106
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 896682 as yet unmatched pairs. 34052 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr2:108,765,463
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 896401 as yet unmatched pairs. 33762 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr2:110,540,081
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 895308 as yet unmatched pairs. 32663 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr2:113,916,885
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 894380 as yet unmatched pairs. 31721 records in RAM.
INFO 2026-06-08 08:52:13 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr2:130,182,375
INFO 2026-06-08 08:52:13 MarkDuplicates Tracking 892926 as yet unmatched pairs. 30245 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 3s. Last read position: chr2:144,424,818
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 890497 as yet unmatched pairs. 27789 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 2s. Last read position: chr2:159,349,729
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 888822 as yet unmatched pairs. 26087 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr2:173,913,172
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 887223 as yet unmatched pairs. 24467 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr2:178,592,864
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 885536 as yet unmatched pairs. 22759 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 1s. Last read position: chr2:190,436,607
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 884492 as yet unmatched pairs. 21699 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr2:197,494,235
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 884925 as yet unmatched pairs. 22114 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr2:202,757,322
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 880776 as yet unmatched pairs. 17949 records in RAM.
INFO 2026-06-08 08:52:30 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr2:207,560,264
INFO 2026-06-08 08:52:30 MarkDuplicates Tracking 881193 as yet unmatched pairs. 18353 records in RAM.
INFO 2026-06-08 08:52:32 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr2:215,381,032
INFO 2026-06-08 08:52:32 MarkDuplicates Tracking 880411 as yet unmatched pairs. 17558 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:216,160,141
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 877155 as yet unmatched pairs. 14286 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 2s. Last read position: chr2:218,495,807
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 874509 as yet unmatched pairs. 11631 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr2:219,445,108
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 872751 as yet unmatched pairs. 9868 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr2:223,966,872
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 871249 as yet unmatched pairs. 8351 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr2:230,873,443
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 870450 as yet unmatched pairs. 7539 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr2:235,516,032
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 867961 as yet unmatched pairs. 5042 records in RAM.
INFO 2026-06-08 08:52:47 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr2:239,139,753
INFO 2026-06-08 08:52:47 MarkDuplicates Tracking 866083 as yet unmatched pairs. 3151 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 1s. Last read position: chr2:241,431,714
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 864932 as yet unmatched pairs. 1983 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 2s. Last read position: chr3:9,064,507
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 861877 as yet unmatched pairs. 65356 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:10,249,256
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 861508 as yet unmatched pairs. 64973 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr3:12,840,161
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 858524 as yet unmatched pairs. 61983 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr3:17,161,217
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 857182 as yet unmatched pairs. 60621 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:31,629,240
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 855781 as yet unmatched pairs. 59204 records in RAM.
INFO 2026-06-08 08:53:00 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr3:37,012,051
INFO 2026-06-08 08:53:00 MarkDuplicates Tracking 853898 as yet unmatched pairs. 57319 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr3:39,408,612
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 861578 as yet unmatched pairs. 64978 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr3:40,532,648
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 850795 as yet unmatched pairs. 54191 records in RAM.
INFO 2026-06-08 08:53:06 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 2s. Last read position: chr3:42,200,858
INFO 2026-06-08 08:53:06 MarkDuplicates Tracking 849333 as yet unmatched pairs. 52691 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr3:45,966,906
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 847448 as yet unmatched pairs. 50796 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 2s. Last read position: chr3:47,504,377
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 845444 as yet unmatched pairs. 48775 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr3:48,421,271
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 844433 as yet unmatched pairs. 47737 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr3:49,024,903
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 843222 as yet unmatched pairs. 46511 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr3:49,130,285
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 841499 as yet unmatched pairs. 44777 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr3:49,704,548
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 838270 as yet unmatched pairs. 41536 records in RAM.
INFO 2026-06-08 08:53:20 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr3:50,340,669
INFO 2026-06-08 08:53:20 MarkDuplicates Tracking 836210 as yet unmatched pairs. 39459 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr3:51,994,069
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 848250 as yet unmatched pairs. 51485 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr3:52,527,884
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 833349 as yet unmatched pairs. 36565 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr3:55,474,500
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 831139 as yet unmatched pairs. 34350 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr3:66,243,291
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 830123 as yet unmatched pairs. 33322 records in RAM.
INFO 2026-06-08 08:53:29 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr3:69,964,993
INFO 2026-06-08 08:53:29 MarkDuplicates Tracking 834507 as yet unmatched pairs. 37689 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr3:98,800,556
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 827282 as yet unmatched pairs. 30445 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr3:107,773,287
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 825844 as yet unmatched pairs. 28994 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr3:119,415,437
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 824074 as yet unmatched pairs. 27202 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:54s. Time for last 1,000,000: 2s. Last read position: chr3:122,845,820
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 822920 as yet unmatched pairs. 26027 records in RAM.
INFO 2026-06-08 08:53:39 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr3:126,989,071
INFO 2026-06-08 08:53:39 MarkDuplicates Tracking 824300 as yet unmatched pairs. 27388 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 2s. Last read position: chr3:127,022,174
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 820757 as yet unmatched pairs. 23835 records in RAM.
INFO 2026-06-08 08:53:43 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr3:128,795,397
INFO 2026-06-08 08:53:43 MarkDuplicates Tracking 821475 as yet unmatched pairs. 24539 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr3:130,941,653
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 816520 as yet unmatched pairs. 19576 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr3:136,327,245
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 813452 as yet unmatched pairs. 16492 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr3:142,508,087
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 812029 as yet unmatched pairs. 15056 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr3:154,263,327
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 810034 as yet unmatched pairs. 13042 records in RAM.
INFO 2026-06-08 08:53:52 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr3:170,145,425
INFO 2026-06-08 08:53:52 MarkDuplicates Tracking 809030 as yet unmatched pairs. 12021 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:05:11s. Time for last 1,000,000: 1s. Last read position: chr3:180,951,445
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 808821 as yet unmatched pairs. 11777 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr3:184,189,564
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 805708 as yet unmatched pairs. 8653 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr3:185,606,404
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 804128 as yet unmatched pairs. 7059 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr3:186,105,341
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 816741 as yet unmatched pairs. 19651 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr3:191,329,658
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 802577 as yet unmatched pairs. 5469 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 2s. Last read position: chr3:196,362,671
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 799250 as yet unmatched pairs. 2130 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr3:197,951,196
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 799424 as yet unmatched pairs. 2283 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 1s. Last read position: chr4:2,063,989
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 795490 as yet unmatched pairs. 17887 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr4:4,409,592
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 794756 as yet unmatched pairs. 17140 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr4:10,097,760
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 791837 as yet unmatched pairs. 14203 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr4:38,878,130
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 790617 as yet unmatched pairs. 12966 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr4:55,424,554
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 789006 as yet unmatched pairs. 11320 records in RAM.
INFO 2026-06-08 08:54:17 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 2s. Last read position: chr4:71,447,597
INFO 2026-06-08 08:54:17 MarkDuplicates Tracking 786894 as yet unmatched pairs. 9196 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 2s. Last read position: chr4:78,181,465
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 785378 as yet unmatched pairs. 7662 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 1s. Last read position: chr4:87,982,610
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 791087 as yet unmatched pairs. 13355 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 1s. Last read position: chr4:108,667,259
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 782870 as yet unmatched pairs. 5119 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 1s. Last read position: chr4:128,842,966
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 781253 as yet unmatched pairs. 3493 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr4:151,101,013
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 786271 as yet unmatched pairs. 8505 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr4:184,764,846
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 778348 as yet unmatched pairs. 566 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr5:10,258,405
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 776885 as yet unmatched pairs. 44304 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 2s. Last read position: chr5:16,676,127
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 776504 as yet unmatched pairs. 43917 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr5:33,466,969
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 773224 as yet unmatched pairs. 40621 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr5:42,468,606
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 771574 as yet unmatched pairs. 38968 records in RAM.
INFO 2026-06-08 08:54:38 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr5:60,638,819
INFO 2026-06-08 08:54:38 MarkDuplicates Tracking 770150 as yet unmatched pairs. 37521 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr5:70,985,634
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 769151 as yet unmatched pairs. 36518 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr5:76,732,468
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 767900 as yet unmatched pairs. 35261 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 3s. Last read position: chr5:82,277,724
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 766813 as yet unmatched pairs. 34159 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 2s. Last read position: chr5:98,774,019
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 764754 as yet unmatched pairs. 32087 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr5:116,488,931
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 763579 as yet unmatched pairs. 30891 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr5:132,761,492
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 761556 as yet unmatched pairs. 28827 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr5:136,160,904
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 759738 as yet unmatched pairs. 26987 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 1s. Last read position: chr5:139,363,767
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 758750 as yet unmatched pairs. 25988 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr5:141,095,954
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 756365 as yet unmatched pairs. 23585 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 1s. Last read position: chr5:141,415,171
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 754951 as yet unmatched pairs. 22166 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr5:142,314,524
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 761091 as yet unmatched pairs. 28279 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr5:149,833,665
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 751790 as yet unmatched pairs. 18947 records in RAM.
INFO 2026-06-08 08:55:03 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,227
INFO 2026-06-08 08:55:03 MarkDuplicates Tracking 793588 as yet unmatched pairs. 60740 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr5:150,406,259
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 792365 as yet unmatched pairs. 59515 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 2s. Last read position: chr5:150,649,744
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 746037 as yet unmatched pairs. 13181 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 2s. Last read position: chr5:157,300,865
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 744444 as yet unmatched pairs. 11583 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr5:171,390,050
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 758367 as yet unmatched pairs. 25481 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr5:171,407,761
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 767638 as yet unmatched pairs. 34748 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr5:177,294,355
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 740145 as yet unmatched pairs. 7239 records in RAM.
INFO 2026-06-08 08:55:17 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr5:179,716,193
INFO 2026-06-08 08:55:17 MarkDuplicates Tracking 739085 as yet unmatched pairs. 6173 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr5:179,824,243
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 751434 as yet unmatched pairs. 18505 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr5:180,850,991
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 734714 as yet unmatched pairs. 1776 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr6:486,641
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 732976 as yet unmatched pairs. 53973 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr6:7,229,069
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 733262 as yet unmatched pairs. 54239 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr6:10,400,509
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 730891 as yet unmatched pairs. 51853 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr6:13,814,203
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 727475 as yet unmatched pairs. 48437 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr6:24,403,149
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 726413 as yet unmatched pairs. 47366 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr6:26,637,714
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 724128 as yet unmatched pairs. 45058 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr6:29,942,847
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 726274 as yet unmatched pairs. 47198 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr6:30,649,729
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 721105 as yet unmatched pairs. 42017 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr6:31,271,113
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 723422 as yet unmatched pairs. 44331 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 2s. Last read position: chr6:31,628,111
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 719416 as yet unmatched pairs. 40321 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr6:31,649,376
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 716310 as yet unmatched pairs. 37206 records in RAM.
INFO 2026-06-08 08:55:44 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr6:31,828,786
INFO 2026-06-08 08:55:44 MarkDuplicates Tracking 716394 as yet unmatched pairs. 37283 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr6:32,154,229
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 712948 as yet unmatched pairs. 33834 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 1s. Last read position: chr6:32,830,786
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 712010 as yet unmatched pairs. 32890 records in RAM.
INFO 2026-06-08 08:55:50 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr6:33,195,436
INFO 2026-06-08 08:55:50 MarkDuplicates Tracking 709587 as yet unmatched pairs. 30458 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr6:33,313,757
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 708681 as yet unmatched pairs. 29542 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr6:33,694,955
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 706076 as yet unmatched pairs. 26935 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr6:35,469,447
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 705792 as yet unmatched pairs. 26641 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr6:38,682,832
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 702642 as yet unmatched pairs. 23466 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr6:42,645,531
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 700867 as yet unmatched pairs. 21671 records in RAM.
INFO 2026-06-08 08:56:00 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 1s. Last read position: chr6:43,187,037
INFO 2026-06-08 08:56:00 MarkDuplicates Tracking 698722 as yet unmatched pairs. 19515 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr6:44,248,701
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 701132 as yet unmatched pairs. 21911 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr6:47,554,672
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 695391 as yet unmatched pairs. 16159 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr6:63,684,910
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 693919 as yet unmatched pairs. 14653 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr6:87,609,127
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 692314 as yet unmatched pairs. 13025 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr6:108,074,250
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 693478 as yet unmatched pairs. 14183 records in RAM.
INFO 2026-06-08 08:56:12 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr6:113,860,502
INFO 2026-06-08 08:56:12 MarkDuplicates Tracking 689182 as yet unmatched pairs. 9873 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 1s. Last read position: chr6:134,170,341
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 688187 as yet unmatched pairs. 8873 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr6:145,922,822
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 685746 as yet unmatched pairs. 6423 records in RAM.
INFO 2026-06-08 08:56:17 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr6:151,373,478
INFO 2026-06-08 08:56:17 MarkDuplicates Tracking 684200 as yet unmatched pairs. 4873 records in RAM.
INFO 2026-06-08 08:56:19 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 1s. Last read position: chr6:159,736,256
INFO 2026-06-08 08:56:19 MarkDuplicates Tracking 682642 as yet unmatched pairs. 3282 records in RAM.
INFO 2026-06-08 08:56:21 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 1s. Last read position: chr6:169,223,423
INFO 2026-06-08 08:56:21 MarkDuplicates Tracking 683688 as yet unmatched pairs. 4301 records in RAM.
INFO 2026-06-08 08:56:23 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 2s. Last read position: chr7:754,713
INFO 2026-06-08 08:56:23 MarkDuplicates Tracking 679723 as yet unmatched pairs. 88760 records in RAM.
INFO 2026-06-08 08:56:25 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 1s. Last read position: chr7:1,539,205
INFO 2026-06-08 08:56:25 MarkDuplicates Tracking 677072 as yet unmatched pairs. 86098 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:45s. Time for last 1,000,000: 1s. Last read position: chr7:2,661,669
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 675152 as yet unmatched pairs. 84153 records in RAM.
INFO 2026-06-08 08:56:30 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr7:5,376,904
INFO 2026-06-08 08:56:30 MarkDuplicates Tracking 672973 as yet unmatched pairs. 81971 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 3s. Last read position: chr7:5,730,715
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 670866 as yet unmatched pairs. 79847 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr7:6,691,110
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 668993 as yet unmatched pairs. 77954 records in RAM.
INFO 2026-06-08 08:56:38 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr7:17,839,973
INFO 2026-06-08 08:56:38 MarkDuplicates Tracking 667685 as yet unmatched pairs. 76642 records in RAM.
INFO 2026-06-08 08:56:40 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 2s. Last read position: chr7:22,818,016
INFO 2026-06-08 08:56:40 MarkDuplicates Tracking 678633 as yet unmatched pairs. 87582 records in RAM.
INFO 2026-06-08 08:56:42 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 2s. Last read position: chr7:26,193,673
INFO 2026-06-08 08:56:42 MarkDuplicates Tracking 664305 as yet unmatched pairs. 73241 records in RAM.
INFO 2026-06-08 08:56:44 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr7:29,354,643
INFO 2026-06-08 08:56:44 MarkDuplicates Tracking 662759 as yet unmatched pairs. 71688 records in RAM.
INFO 2026-06-08 08:56:46 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr7:33,177,544
INFO 2026-06-08 08:56:46 MarkDuplicates Tracking 661956 as yet unmatched pairs. 70860 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 66s. Last read position: chr7:42,025,286
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 659494 as yet unmatched pairs. 68391 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 2s. Last read position: chr7:44,104,818
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 659037 as yet unmatched pairs. 67928 records in RAM.
INFO 2026-06-08 08:57:57 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr7:44,647,672
INFO 2026-06-08 08:57:57 MarkDuplicates Tracking 657354 as yet unmatched pairs. 66237 records in RAM.
INFO 2026-06-08 08:57:59 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr7:45,101,801
INFO 2026-06-08 08:57:59 MarkDuplicates Tracking 655200 as yet unmatched pairs. 64075 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr7:54,757,543
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 652118 as yet unmatched pairs. 60980 records in RAM.
INFO 2026-06-08 08:58:03 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 2s. Last read position: chr7:66,945,090
INFO 2026-06-08 08:58:03 MarkDuplicates Tracking 651232 as yet unmatched pairs. 60065 records in RAM.
INFO 2026-06-08 08:58:05 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr7:72,949,383
INFO 2026-06-08 08:58:05 MarkDuplicates Tracking 649995 as yet unmatched pairs. 58819 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 1s. Last read position: chr7:73,465,508
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 649207 as yet unmatched pairs. 58024 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr7:74,728,873
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 648168 as yet unmatched pairs. 56976 records in RAM.
INFO 2026-06-08 08:58:10 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr7:75,342,952
INFO 2026-06-08 08:58:10 MarkDuplicates Tracking 646407 as yet unmatched pairs. 55212 records in RAM.
INFO 2026-06-08 08:58:12 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr7:75,881,932
INFO 2026-06-08 08:58:12 MarkDuplicates Tracking 646176 as yet unmatched pairs. 54965 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr7:76,303,844
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 649062 as yet unmatched pairs. 57843 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr7:77,627,215
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 642566 as yet unmatched pairs. 51345 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr7:91,973,954
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 642624 as yet unmatched pairs. 51398 records in RAM.
INFO 2026-06-08 08:58:21 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 4s. Last read position: chr7:92,100,863
INFO 2026-06-08 08:58:21 MarkDuplicates Tracking 640578 as yet unmatched pairs. 49342 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr7:94,664,493
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 638425 as yet unmatched pairs. 47177 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr7:98,910,274
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 636397 as yet unmatched pairs. 45145 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr7:99,386,695
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 638593 as yet unmatched pairs. 47338 records in RAM.
INFO 2026-06-08 08:58:29 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 1s. Last read position: chr7:99,619,741
INFO 2026-06-08 08:58:29 MarkDuplicates Tracking 633310 as yet unmatched pairs. 42050 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr7:100,157,205
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 631003 as yet unmatched pairs. 39734 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,577,536
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 629741 as yet unmatched pairs. 38458 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,867,540
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 629558 as yet unmatched pairs. 38264 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr7:101,240,238
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 627651 as yet unmatched pairs. 36354 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr7:102,474,361
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 624479 as yet unmatched pairs. 33175 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr7:102,561,057
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 627934 as yet unmatched pairs. 36625 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr7:102,659,857
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 625277 as yet unmatched pairs. 33959 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr7:105,106,628
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 622177 as yet unmatched pairs. 30768 records in RAM.
INFO 2026-06-08 08:58:43 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:10:01s. Time for last 1,000,000: 1s. Last read position: chr7:107,753,463
INFO 2026-06-08 08:58:43 MarkDuplicates Tracking 620446 as yet unmatched pairs. 29027 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr7:116,699,134
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 626320 as yet unmatched pairs. 34871 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 2s. Last read position: chr7:116,763,182
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 621939 as yet unmatched pairs. 30482 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr7:121,984,002
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 617616 as yet unmatched pairs. 26158 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr7:127,374,598
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 614895 as yet unmatched pairs. 23432 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr7:127,721,294
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 626745 as yet unmatched pairs. 35279 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 2s. Last read position: chr7:128,089,557
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 617618 as yet unmatched pairs. 26152 records in RAM.
INFO 2026-06-08 08:58:56 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr7:129,203,452
INFO 2026-06-08 08:58:56 MarkDuplicates Tracking 609533 as yet unmatched pairs. 18066 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 2s. Last read position: chr7:134,965,364
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 607670 as yet unmatched pairs. 16187 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr7:137,912,991
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 610617 as yet unmatched pairs. 19128 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr7:140,026,250
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 603760 as yet unmatched pairs. 12256 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 2s. Last read position: chr7:143,263,516
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 604135 as yet unmatched pairs. 12620 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr7:149,224,240
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 601122 as yet unmatched pairs. 9604 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:10:26s. Time for last 1,000,000: 2s. Last read position: chr7:150,952,437
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 598593 as yet unmatched pairs. 7067 records in RAM.
INFO 2026-06-08 08:59:10 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 2s. Last read position: chr7:151,116,792
INFO 2026-06-08 08:59:10 MarkDuplicates Tracking 598652 as yet unmatched pairs. 7112 records in RAM.
INFO 2026-06-08 08:59:12 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr7:152,162,618
INFO 2026-06-08 08:59:12 MarkDuplicates Tracking 594773 as yet unmatched pairs. 3197 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr7:156,836,848
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 592823 as yet unmatched pairs. 1229 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr8:11,808,822
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 594255 as yet unmatched pairs. 36180 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr8:18,067,275
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 595905 as yet unmatched pairs. 37828 records in RAM.
INFO 2026-06-08 08:59:20 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr8:22,556,755
INFO 2026-06-08 08:59:20 MarkDuplicates Tracking 588257 as yet unmatched pairs. 30172 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr8:22,618,427
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 590850 as yet unmatched pairs. 32755 records in RAM.
INFO 2026-06-08 08:59:23 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr8:27,748,528
INFO 2026-06-08 08:59:23 MarkDuplicates Tracking 584448 as yet unmatched pairs. 26346 records in RAM.
INFO 2026-06-08 08:59:25 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr8:38,107,077
INFO 2026-06-08 08:59:25 MarkDuplicates Tracking 582311 as yet unmatched pairs. 24200 records in RAM.
INFO 2026-06-08 08:59:27 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr8:38,842,286
INFO 2026-06-08 08:59:27 MarkDuplicates Tracking 583971 as yet unmatched pairs. 25853 records in RAM.
INFO 2026-06-08 08:59:28 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr8:47,737,536
INFO 2026-06-08 08:59:28 MarkDuplicates Tracking 579495 as yet unmatched pairs. 21341 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr8:56,167,098
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 578178 as yet unmatched pairs. 20021 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr8:67,277,367
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 576026 as yet unmatched pairs. 17846 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 2s. Last read position: chr8:82,292,084
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 574482 as yet unmatched pairs. 16290 records in RAM.
INFO 2026-06-08 08:59:36 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr8:98,041,786
INFO 2026-06-08 08:59:36 MarkDuplicates Tracking 587265 as yet unmatched pairs. 29070 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr8:100,712,709
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 575266 as yet unmatched pairs. 17068 records in RAM.
INFO 2026-06-08 08:59:39 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr8:103,324,922
INFO 2026-06-08 08:59:39 MarkDuplicates Tracking 569669 as yet unmatched pairs. 11450 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr8:124,475,165
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 568213 as yet unmatched pairs. 9983 records in RAM.
INFO 2026-06-08 08:59:42 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 1s. Last read position: chr8:132,310,806
INFO 2026-06-08 08:59:42 MarkDuplicates Tracking 566130 as yet unmatched pairs. 7888 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,578,022
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 564408 as yet unmatched pairs. 6145 records in RAM.
INFO 2026-06-08 08:59:45 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,922,601
INFO 2026-06-08 08:59:45 MarkDuplicates Tracking 562314 as yet unmatched pairs. 4040 records in RAM.
INFO 2026-06-08 08:59:47 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr8:144,397,563
INFO 2026-06-08 08:59:47 MarkDuplicates Tracking 560025 as yet unmatched pairs. 1749 records in RAM.
INFO 2026-06-08 08:59:49 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr9:712,014
INFO 2026-06-08 08:59:49 MarkDuplicates Tracking 559480 as yet unmatched pairs. 34179 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr9:6,013,500
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 556505 as yet unmatched pairs. 31191 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr9:27,455,284
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 554972 as yet unmatched pairs. 29621 records in RAM.
INFO 2026-06-08 08:59:54 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr9:34,976,588
INFO 2026-06-08 08:59:54 MarkDuplicates Tracking 552893 as yet unmatched pairs. 27528 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr9:36,191,202
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 551789 as yet unmatched pairs. 26418 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr9:76,705,212
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 549841 as yet unmatched pairs. 24443 records in RAM.
INFO 2026-06-08 08:59:58 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr9:87,729,582
INFO 2026-06-08 08:59:58 MarkDuplicates Tracking 554206 as yet unmatched pairs. 28792 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr9:94,924,152
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 546443 as yet unmatched pairs. 21019 records in RAM.
INFO 2026-06-08 09:00:01 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr9:100,452,618
INFO 2026-06-08 09:00:01 MarkDuplicates Tracking 544641 as yet unmatched pairs. 19202 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr9:112,124,286
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 543059 as yet unmatched pairs. 17611 records in RAM.
INFO 2026-06-08 09:00:05 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr9:120,439,400
INFO 2026-06-08 09:00:05 MarkDuplicates Tracking 541527 as yet unmatched pairs. 16059 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr9:124,809,932
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 539366 as yet unmatched pairs. 13877 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr9:127,671,972
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 539235 as yet unmatched pairs. 13740 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr9:128,600,090
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 536602 as yet unmatched pairs. 11105 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr9:130,884,168
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 534507 as yet unmatched pairs. 9000 records in RAM.
INFO 2026-06-08 09:00:13 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr9:131,626,015
INFO 2026-06-08 09:00:13 MarkDuplicates Tracking 533315 as yet unmatched pairs. 7787 records in RAM.
INFO 2026-06-08 09:00:15 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr9:134,045,365
INFO 2026-06-08 09:00:15 MarkDuplicates Tracking 531317 as yet unmatched pairs. 5772 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr9:136,515,361
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 529205 as yet unmatched pairs. 3654 records in RAM.
INFO 2026-06-08 09:00:18 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr9:137,192,099
INFO 2026-06-08 09:00:18 MarkDuplicates Tracking 526946 as yet unmatched pairs. 1380 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 2s. Last read position: chr10:3,138,290
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 524871 as yet unmatched pairs. 26968 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 2s. Last read position: chr10:12,170,840
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 523190 as yet unmatched pairs. 25282 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr10:17,235,231
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 525567 as yet unmatched pairs. 27646 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr10:28,595,734
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 521653 as yet unmatched pairs. 23709 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr10:34,360,192
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 518393 as yet unmatched pairs. 20444 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr10:46,016,575
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 520011 as yet unmatched pairs. 22059 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr10:62,092,595
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 516073 as yet unmatched pairs. 18120 records in RAM.
INFO 2026-06-08 09:00:32 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr10:72,216,473
INFO 2026-06-08 09:00:32 MarkDuplicates Tracking 514148 as yet unmatched pairs. 16191 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr10:73,807,918
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 512233 as yet unmatched pairs. 14266 records in RAM.
INFO 2026-06-08 09:00:35 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr10:79,432,468
INFO 2026-06-08 09:00:35 MarkDuplicates Tracking 510903 as yet unmatched pairs. 12926 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr10:91,817,148
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 509460 as yet unmatched pairs. 11472 records in RAM.
INFO 2026-06-08 09:00:39 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr10:96,533,105
INFO 2026-06-08 09:00:39 MarkDuplicates Tracking 508543 as yet unmatched pairs. 10548 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 2s. Last read position: chr10:100,245,801
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 505621 as yet unmatched pairs. 7615 records in RAM.
INFO 2026-06-08 09:00:43 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 2s. Last read position: chr10:102,480,872
INFO 2026-06-08 09:00:43 MarkDuplicates Tracking 503871 as yet unmatched pairs. 5860 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr10:114,314,015
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 502059 as yet unmatched pairs. 4037 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr10:120,865,112
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 500508 as yet unmatched pairs. 2484 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr10:132,405,160
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 498671 as yet unmatched pairs. 635 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr11:640,491
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 496718 as yet unmatched pairs. 50444 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr11:1,763,824
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 494575 as yet unmatched pairs. 48296 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:12:11s. Time for last 1,000,000: 1s. Last read position: chr11:6,612,881
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 492615 as yet unmatched pairs. 46330 records in RAM.
INFO 2026-06-08 09:00:54 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr11:9,437,772
INFO 2026-06-08 09:00:54 MarkDuplicates Tracking 491253 as yet unmatched pairs. 44952 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 1s. Last read position: chr11:17,077,165
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 494630 as yet unmatched pairs. 48324 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr11:19,948,992
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 488699 as yet unmatched pairs. 42386 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr11:33,411,351
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 486304 as yet unmatched pairs. 39987 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr11:35,229,250
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 486751 as yet unmatched pairs. 40421 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr11:47,274,649
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 483158 as yet unmatched pairs. 36818 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr11:57,673,051
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 481589 as yet unmatched pairs. 35241 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr11:61,313,872
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 480477 as yet unmatched pairs. 34126 records in RAM.
INFO 2026-06-08 09:01:08 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:12:26s. Time for last 1,000,000: 1s. Last read position: chr11:62,519,609
INFO 2026-06-08 09:01:08 MarkDuplicates Tracking 478603 as yet unmatched pairs. 32250 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr11:62,600,214
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 476344 as yet unmatched pairs. 29982 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:12:29s. Time for last 1,000,000: 1s. Last read position: chr11:63,763,599
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 474774 as yet unmatched pairs. 28410 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr11:64,769,582
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 472851 as yet unmatched pairs. 26484 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr11:65,554,145
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 470463 as yet unmatched pairs. 24053 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:12:34s. Time for last 1,000,000: 1s. Last read position: chr11:65,718,662
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 468161 as yet unmatched pairs. 21746 records in RAM.
INFO 2026-06-08 09:01:17 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr11:66,643,733
INFO 2026-06-08 09:01:17 MarkDuplicates Tracking 466409 as yet unmatched pairs. 19986 records in RAM.
INFO 2026-06-08 09:01:19 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr11:68,049,162
INFO 2026-06-08 09:01:19 MarkDuplicates Tracking 464199 as yet unmatched pairs. 17771 records in RAM.
INFO 2026-06-08 09:01:21 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr11:71,994,801
INFO 2026-06-08 09:01:21 MarkDuplicates Tracking 462350 as yet unmatched pairs. 15922 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr11:74,745,842
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 460295 as yet unmatched pairs. 13857 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr11:78,465,962
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 459037 as yet unmatched pairs. 12587 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr11:89,490,402
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 458695 as yet unmatched pairs. 12229 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr11:104,954,897
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 455324 as yet unmatched pairs. 8852 records in RAM.
INFO 2026-06-08 09:01:29 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr11:113,854,257
INFO 2026-06-08 09:01:29 MarkDuplicates Tracking 453785 as yet unmatched pairs. 7300 records in RAM.
INFO 2026-06-08 09:01:31 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr11:118,597,854
INFO 2026-06-08 09:01:31 MarkDuplicates Tracking 452791 as yet unmatched pairs. 6304 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr11:119,312,149
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 451447 as yet unmatched pairs. 4954 records in RAM.
INFO 2026-06-08 09:01:34 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr11:124,625,668
INFO 2026-06-08 09:01:34 MarkDuplicates Tracking 448909 as yet unmatched pairs. 2412 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr11:129,874,273
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 447260 as yet unmatched pairs. 740 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 2s. Last read position: chr12:2,931,148
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 445532 as yet unmatched pairs. 63679 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr12:6,598,315
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 445238 as yet unmatched pairs. 63383 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr12:7,486,958
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 442513 as yet unmatched pairs. 60652 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr12:10,723,153
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 440521 as yet unmatched pairs. 58659 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr12:19,348,415
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 439359 as yet unmatched pairs. 57481 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr12:30,710,373
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 437346 as yet unmatched pairs. 55447 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr12:46,364,495
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 437951 as yet unmatched pairs. 56048 records in RAM.
INFO 2026-06-08 09:01:49 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr12:49,032,360
INFO 2026-06-08 09:01:49 MarkDuplicates Tracking 434651 as yet unmatched pairs. 52739 records in RAM.
INFO 2026-06-08 09:01:51 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr12:49,186,364
INFO 2026-06-08 09:01:51 MarkDuplicates Tracking 432790 as yet unmatched pairs. 50877 records in RAM.
INFO 2026-06-08 09:01:53 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr12:50,723,242
INFO 2026-06-08 09:01:53 MarkDuplicates Tracking 431517 as yet unmatched pairs. 49598 records in RAM.
INFO 2026-06-08 09:01:54 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr12:53,039,303
INFO 2026-06-08 09:01:54 MarkDuplicates Tracking 431273 as yet unmatched pairs. 49354 records in RAM.
INFO 2026-06-08 09:01:56 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr12:53,462,519
INFO 2026-06-08 09:01:56 MarkDuplicates Tracking 437073 as yet unmatched pairs. 55141 records in RAM.
INFO 2026-06-08 09:01:58 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,596
INFO 2026-06-08 09:01:58 MarkDuplicates Tracking 426283 as yet unmatched pairs. 44334 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:13:17s. Time for last 1,000,000: 1s. Last read position: chr12:55,725,590
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 428748 as yet unmatched pairs. 46799 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr12:55,955,273
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 460366 as yet unmatched pairs. 78407 records in RAM.
INFO 2026-06-08 09:02:03 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr12:55,956,972
INFO 2026-06-08 09:02:03 MarkDuplicates Tracking 445560 as yet unmatched pairs. 63597 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr12:55,957,451
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 457831 as yet unmatched pairs. 75858 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr12:55,958,584
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 460068 as yet unmatched pairs. 78095 records in RAM.
INFO 2026-06-08 09:02:08 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr12:55,968,099
INFO 2026-06-08 09:02:08 MarkDuplicates Tracking 421046 as yet unmatched pairs. 39071 records in RAM.
INFO 2026-06-08 09:02:10 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr12:56,098,844
INFO 2026-06-08 09:02:10 MarkDuplicates Tracking 415187 as yet unmatched pairs. 33209 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr12:56,311,226
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 413046 as yet unmatched pairs. 31064 records in RAM.
INFO 2026-06-08 09:02:13 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr12:56,688,013
INFO 2026-06-08 09:02:13 MarkDuplicates Tracking 411371 as yet unmatched pairs. 29388 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr12:57,098,570
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 412162 as yet unmatched pairs. 30179 records in RAM.
INFO 2026-06-08 09:02:16 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr12:57,254,737
INFO 2026-06-08 09:02:16 MarkDuplicates Tracking 408122 as yet unmatched pairs. 26138 records in RAM.
INFO 2026-06-08 09:02:18 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr12:62,381,550
INFO 2026-06-08 09:02:18 MarkDuplicates Tracking 405807 as yet unmatched pairs. 23819 records in RAM.
INFO 2026-06-08 09:02:20 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 2s. Last read position: chr12:67,298,990
INFO 2026-06-08 09:02:20 MarkDuplicates Tracking 404603 as yet unmatched pairs. 22611 records in RAM.
INFO 2026-06-08 09:02:22 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr12:71,620,214
INFO 2026-06-08 09:02:22 MarkDuplicates Tracking 403303 as yet unmatched pairs. 21292 records in RAM.
INFO 2026-06-08 09:02:24 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr12:76,053,775
INFO 2026-06-08 09:02:24 MarkDuplicates Tracking 411538 as yet unmatched pairs. 29525 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr12:89,634,859
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 399680 as yet unmatched pairs. 17658 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 1s. Last read position: chr12:98,601,244
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 399802 as yet unmatched pairs. 17778 records in RAM.
INFO 2026-06-08 09:02:29 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr12:104,265,374
INFO 2026-06-08 09:02:29 MarkDuplicates Tracking 396990 as yet unmatched pairs. 14955 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr12:109,264,232
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 394850 as yet unmatched pairs. 12804 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,328
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 394227 as yet unmatched pairs. 12173 records in RAM.
INFO 2026-06-08 09:02:34 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr12:115,970,734
INFO 2026-06-08 09:02:34 MarkDuplicates Tracking 392167 as yet unmatched pairs. 10102 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr12:120,198,562
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 395501 as yet unmatched pairs. 13394 records in RAM.
INFO 2026-06-08 09:02:37 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr12:121,752,403
INFO 2026-06-08 09:02:37 MarkDuplicates Tracking 388265 as yet unmatched pairs. 6146 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 1s. Last read position: chr12:123,584,635
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 387171 as yet unmatched pairs. 5047 records in RAM.
INFO 2026-06-08 09:02:40 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr12:124,952,411
INFO 2026-06-08 09:02:40 MarkDuplicates Tracking 384906 as yet unmatched pairs. 2753 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr12:132,735,424
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 382888 as yet unmatched pairs. 733 records in RAM.
INFO 2026-06-08 09:02:43 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr13:21,514,397
INFO 2026-06-08 09:02:43 MarkDuplicates Tracking 381254 as yet unmatched pairs. 11682 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr13:30,463,215
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 380085 as yet unmatched pairs. 10507 records in RAM.
INFO 2026-06-08 09:02:47 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr13:44,575,028
INFO 2026-06-08 09:02:47 MarkDuplicates Tracking 378166 as yet unmatched pairs. 8579 records in RAM.
INFO 2026-06-08 09:02:49 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr13:49,476,902
INFO 2026-06-08 09:02:49 MarkDuplicates Tracking 377152 as yet unmatched pairs. 7560 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr13:77,205,285
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 375255 as yet unmatched pairs. 5651 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 2s. Last read position: chr13:97,276,400
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 373467 as yet unmatched pairs. 3854 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 2s. Last read position: chr13:110,462,283
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 371607 as yet unmatched pairs. 1986 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr14:20,378,222
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 369610 as yet unmatched pairs. 31752 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr14:22,603,390
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 367857 as yet unmatched pairs. 29995 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr14:23,953,812
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 366352 as yet unmatched pairs. 28482 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr14:31,102,984
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 364808 as yet unmatched pairs. 26935 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr14:39,177,906
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 362853 as yet unmatched pairs. 24975 records in RAM.
INFO 2026-06-08 09:03:05 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 1s. Last read position: chr14:50,937,790
INFO 2026-06-08 09:03:05 MarkDuplicates Tracking 361255 as yet unmatched pairs. 23354 records in RAM.
INFO 2026-06-08 09:03:07 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr14:60,107,662
INFO 2026-06-08 09:03:07 MarkDuplicates Tracking 360171 as yet unmatched pairs. 22262 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr14:64,741,574
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 359012 as yet unmatched pairs. 21103 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr14:69,054,822
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 356330 as yet unmatched pairs. 18417 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr14:74,480,256
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 358196 as yet unmatched pairs. 20262 records in RAM.
INFO 2026-06-08 09:03:13 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 1s. Last read position: chr14:77,027,701
INFO 2026-06-08 09:03:13 MarkDuplicates Tracking 353104 as yet unmatched pairs. 15162 records in RAM.
INFO 2026-06-08 09:03:15 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr14:92,116,168
INFO 2026-06-08 09:03:15 MarkDuplicates Tracking 351564 as yet unmatched pairs. 13616 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 1s. Last read position: chr14:96,562,836
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 351092 as yet unmatched pairs. 13141 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr14:102,008,175
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 349268 as yet unmatched pairs. 11305 records in RAM.
INFO 2026-06-08 09:03:20 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr14:102,231,806
INFO 2026-06-08 09:03:20 MarkDuplicates Tracking 346226 as yet unmatched pairs. 8263 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr14:104,714,295
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 345659 as yet unmatched pairs. 7681 records in RAM.
INFO 2026-06-08 09:03:23 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr14:105,464,825
INFO 2026-06-08 09:03:23 MarkDuplicates Tracking 342889 as yet unmatched pairs. 4905 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,525
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 364130 as yet unmatched pairs. 26140 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 2s. Last read position: chr14:105,742,802
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 358731 as yet unmatched pairs. 20729 records in RAM.
INFO 2026-06-08 09:03:28 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 1s. Last read position: chr14:105,770,669
INFO 2026-06-08 09:03:28 MarkDuplicates Tracking 343078 as yet unmatched pairs. 5075 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:47s. Time for last 1,000,000: 1s. Last read position: chr15:22,564,429
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 338047 as yet unmatched pairs. 40668 records in RAM.
INFO 2026-06-08 09:03:31 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:49s. Time for last 1,000,000: 1s. Last read position: chr15:28,272,960
INFO 2026-06-08 09:03:31 MarkDuplicates Tracking 336469 as yet unmatched pairs. 39081 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr15:31,066,137
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 337647 as yet unmatched pairs. 40258 records in RAM.
INFO 2026-06-08 09:03:34 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr15:33,153,552
INFO 2026-06-08 09:03:34 MarkDuplicates Tracking 337130 as yet unmatched pairs. 39733 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr15:36,746,838
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 332129 as yet unmatched pairs. 34730 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr15:41,567,484
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 330804 as yet unmatched pairs. 33394 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr15:42,408,264
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 333396 as yet unmatched pairs. 35984 records in RAM.
INFO 2026-06-08 09:03:40 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr15:42,450,862
INFO 2026-06-08 09:03:40 MarkDuplicates Tracking 329058 as yet unmatched pairs. 31641 records in RAM.
INFO 2026-06-08 09:03:42 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr15:43,768,507
INFO 2026-06-08 09:03:42 MarkDuplicates Tracking 326926 as yet unmatched pairs. 29503 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr15:48,420,717
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 323843 as yet unmatched pairs. 26411 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr15:52,351,447
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 322534 as yet unmatched pairs. 25101 records in RAM.
INFO 2026-06-08 09:03:46 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr15:57,253,326
INFO 2026-06-08 09:03:46 MarkDuplicates Tracking 325565 as yet unmatched pairs. 28130 records in RAM.
INFO 2026-06-08 09:03:48 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr15:61,984,874
INFO 2026-06-08 09:03:48 MarkDuplicates Tracking 319563 as yet unmatched pairs. 22127 records in RAM.
INFO 2026-06-08 09:03:50 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 1s. Last read position: chr15:64,963,661
INFO 2026-06-08 09:03:50 MarkDuplicates Tracking 318153 as yet unmatched pairs. 20715 records in RAM.
INFO 2026-06-08 09:03:53 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:15:11s. Time for last 1,000,000: 3s. Last read position: chr15:66,503,456
INFO 2026-06-08 09:03:53 MarkDuplicates Tracking 315869 as yet unmatched pairs. 18427 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 3s. Last read position: chr15:70,096,184
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 314674 as yet unmatched pairs. 17223 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 2s. Last read position: chr15:73,994,822
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 313609 as yet unmatched pairs. 16152 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 1s. Last read position: chr15:75,210,907
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 311179 as yet unmatched pairs. 13722 records in RAM.
INFO 2026-06-08 09:04:03 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr15:75,677,104
INFO 2026-06-08 09:04:03 MarkDuplicates Tracking 314325 as yet unmatched pairs. 16867 records in RAM.
INFO 2026-06-08 09:04:05 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr15:75,689,552
INFO 2026-06-08 09:04:05 MarkDuplicates Tracking 310443 as yet unmatched pairs. 12977 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 1s. Last read position: chr15:78,806,951
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 304680 as yet unmatched pairs. 7202 records in RAM.
INFO 2026-06-08 09:04:08 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr15:82,540,079
INFO 2026-06-08 09:04:08 MarkDuplicates Tracking 303007 as yet unmatched pairs. 5520 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr15:88,652,279
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 303497 as yet unmatched pairs. 6006 records in RAM.
INFO 2026-06-08 09:04:12 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 1s. Last read position: chr15:90,634,896
INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 299865 as yet unmatched pairs. 2368 records in RAM.
INFO 2026-06-08 09:04:14 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 1s. Last read position: chr15:99,704,425
INFO 2026-06-08 09:04:14 MarkDuplicates Tracking 298216 as yet unmatched pairs. 712 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 3s. Last read position: chr16:634,630
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 296808 as yet unmatched pairs. 43445 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 3s. Last read position: chr16:1,453,832
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 295670 as yet unmatched pairs. 42304 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr16:2,092,062
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 292244 as yet unmatched pairs. 38878 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr16:2,760,436
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 291577 as yet unmatched pairs. 38204 records in RAM.
INFO 2026-06-08 09:04:26 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr16:3,290,244
INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 288198 as yet unmatched pairs. 34825 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:15:45s. Time for last 1,000,000: 1s. Last read position: chr16:5,091,801
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 286203 as yet unmatched pairs. 32824 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:15:48s. Time for last 1,000,000: 2s. Last read position: chr16:14,857,504
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 284892 as yet unmatched pairs. 31506 records in RAM.
INFO 2026-06-08 09:04:32 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr16:16,045,983
INFO 2026-06-08 09:04:32 MarkDuplicates Tracking 283740 as yet unmatched pairs. 30354 records in RAM.
INFO 2026-06-08 09:04:34 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 1s. Last read position: chr16:18,345,332
INFO 2026-06-08 09:04:34 MarkDuplicates Tracking 283672 as yet unmatched pairs. 30285 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:53s. Time for last 1,000,000: 1s. Last read position: chr16:18,868,205
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 282087 as yet unmatched pairs. 28700 records in RAM.
INFO 2026-06-08 09:04:37 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:55s. Time for last 1,000,000: 1s. Last read position: chr16:21,415,016
INFO 2026-06-08 09:04:37 MarkDuplicates Tracking 283045 as yet unmatched pairs. 29658 records in RAM.
INFO 2026-06-08 09:04:39 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:57s. Time for last 1,000,000: 1s. Last read position: chr16:21,886,352
INFO 2026-06-08 09:04:39 MarkDuplicates Tracking 281055 as yet unmatched pairs. 27668 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,743
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 280290 as yet unmatched pairs. 26901 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 2s. Last read position: chr16:28,156,345
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 279128 as yet unmatched pairs. 25735 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 2s. Last read position: chr16:28,866,151
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 277371 as yet unmatched pairs. 23978 records in RAM.
INFO 2026-06-08 09:04:47 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 1s. Last read position: chr16:29,491,601
INFO 2026-06-08 09:04:47 MarkDuplicates Tracking 277670 as yet unmatched pairs. 24277 records in RAM.
INFO 2026-06-08 09:04:48 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:16:06s. Time for last 1,000,000: 1s. Last read position: chr16:30,069,591
INFO 2026-06-08 09:04:48 MarkDuplicates Tracking 277316 as yet unmatched pairs. 23921 records in RAM.
INFO 2026-06-08 09:04:50 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 1s. Last read position: chr16:30,398,518
INFO 2026-06-08 09:04:50 MarkDuplicates Tracking 273745 as yet unmatched pairs. 20350 records in RAM.
INFO 2026-06-08 09:04:51 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:16:09s. Time for last 1,000,000: 1s. Last read position: chr16:31,110,435
INFO 2026-06-08 09:04:51 MarkDuplicates Tracking 272025 as yet unmatched pairs. 18630 records in RAM.
INFO 2026-06-08 09:04:53 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:16:11s. Time for last 1,000,000: 1s. Last read position: chr16:46,971,389
INFO 2026-06-08 09:04:53 MarkDuplicates Tracking 270234 as yet unmatched pairs. 16838 records in RAM.
INFO 2026-06-08 09:04:55 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:16:13s. Time for last 1,000,000: 2s. Last read position: chr16:56,940,167
INFO 2026-06-08 09:04:55 MarkDuplicates Tracking 269366 as yet unmatched pairs. 15963 records in RAM.
INFO 2026-06-08 09:04:57 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:16:15s. Time for last 1,000,000: 2s. Last read position: chr16:66,552,730
INFO 2026-06-08 09:04:57 MarkDuplicates Tracking 267515 as yet unmatched pairs. 14110 records in RAM.
INFO 2026-06-08 09:05:00 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:16:18s. Time for last 1,000,000: 2s. Last read position: chr16:67,868,515
INFO 2026-06-08 09:05:00 MarkDuplicates Tracking 267129 as yet unmatched pairs. 13722 records in RAM.
INFO 2026-06-08 09:05:01 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 1s. Last read position: chr16:69,888,226
INFO 2026-06-08 09:05:01 MarkDuplicates Tracking 263166 as yet unmatched pairs. 9759 records in RAM.
INFO 2026-06-08 09:05:03 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 1s. Last read position: chr16:71,922,565
INFO 2026-06-08 09:05:03 MarkDuplicates Tracking 262257 as yet unmatched pairs. 8845 records in RAM.
INFO 2026-06-08 09:05:05 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr16:84,095,732
INFO 2026-06-08 09:05:05 MarkDuplicates Tracking 259605 as yet unmatched pairs. 6186 records in RAM.
INFO 2026-06-08 09:05:06 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:16:24s. Time for last 1,000,000: 1s. Last read position: chr16:88,428,685
INFO 2026-06-08 09:05:06 MarkDuplicates Tracking 257452 as yet unmatched pairs. 4017 records in RAM.
INFO 2026-06-08 09:05:08 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 1s. Last read position: chr16:89,560,946
INFO 2026-06-08 09:05:08 MarkDuplicates Tracking 260932 as yet unmatched pairs. 7491 records in RAM.
INFO 2026-06-08 09:05:10 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 2s. Last read position: chr17:105,666
INFO 2026-06-08 09:05:10 MarkDuplicates Tracking 253408 as yet unmatched pairs. 67534 records in RAM.
INFO 2026-06-08 09:05:12 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 1s. Last read position: chr17:1,656,728
INFO 2026-06-08 09:05:12 MarkDuplicates Tracking 252292 as yet unmatched pairs. 66411 records in RAM.
INFO 2026-06-08 09:07:31 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 138s. Last read position: chr17:2,375,814
INFO 2026-06-08 09:07:31 MarkDuplicates Tracking 250090 as yet unmatched pairs. 64209 records in RAM.
INFO 2026-06-08 09:07:34 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:18:52s. Time for last 1,000,000: 2s. Last read position: chr17:4,885,953
INFO 2026-06-08 09:07:34 MarkDuplicates Tracking 248796 as yet unmatched pairs. 62913 records in RAM.
INFO 2026-06-08 09:07:36 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 2s. Last read position: chr17:7,230,299
INFO 2026-06-08 09:07:36 MarkDuplicates Tracking 246658 as yet unmatched pairs. 60775 records in RAM.
INFO 2026-06-08 09:07:38 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 2s. Last read position: chr17:7,576,575
INFO 2026-06-08 09:07:38 MarkDuplicates Tracking 246322 as yet unmatched pairs. 60438 records in RAM.
INFO 2026-06-08 09:07:40 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr17:8,377,611
INFO 2026-06-08 09:07:40 MarkDuplicates Tracking 245114 as yet unmatched pairs. 59229 records in RAM.
INFO 2026-06-08 09:07:41 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr17:16,427,479
INFO 2026-06-08 09:07:41 MarkDuplicates Tracking 241570 as yet unmatched pairs. 55680 records in RAM.
INFO 2026-06-08 09:07:43 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 1s. Last read position: chr17:18,247,743
INFO 2026-06-08 09:07:43 MarkDuplicates Tracking 240131 as yet unmatched pairs. 54236 records in RAM.
INFO 2026-06-08 09:07:45 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:19:03s. Time for last 1,000,000: 2s. Last read position: chr17:28,355,801
INFO 2026-06-08 09:07:45 MarkDuplicates Tracking 238596 as yet unmatched pairs. 52695 records in RAM.
INFO 2026-06-08 09:07:47 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr17:29,267,506
INFO 2026-06-08 09:07:47 MarkDuplicates Tracking 236877 as yet unmatched pairs. 50970 records in RAM.
INFO 2026-06-08 09:07:49 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr17:31,988,390
INFO 2026-06-08 09:07:49 MarkDuplicates Tracking 236014 as yet unmatched pairs. 50107 records in RAM.
INFO 2026-06-08 09:07:51 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:19:09s. Time for last 1,000,000: 1s. Last read position: chr17:36,492,793
INFO 2026-06-08 09:07:51 MarkDuplicates Tracking 233575 as yet unmatched pairs. 47668 records in RAM.
INFO 2026-06-08 09:07:53 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:19:11s. Time for last 1,000,000: 1s. Last read position: chr17:38,850,371
INFO 2026-06-08 09:07:53 MarkDuplicates Tracking 241146 as yet unmatched pairs. 55239 records in RAM.
INFO 2026-06-08 09:07:55 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr17:39,730,407
INFO 2026-06-08 09:07:55 MarkDuplicates Tracking 230027 as yet unmatched pairs. 44115 records in RAM.
INFO 2026-06-08 09:07:56 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 1s. Last read position: chr17:41,971,926
INFO 2026-06-08 09:07:56 MarkDuplicates Tracking 229778 as yet unmatched pairs. 43861 records in RAM.
INFO 2026-06-08 09:07:58 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr17:42,780,886
INFO 2026-06-08 09:07:58 MarkDuplicates Tracking 227718 as yet unmatched pairs. 41801 records in RAM.
INFO 2026-06-08 09:08:00 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr17:44,004,911
INFO 2026-06-08 09:08:00 MarkDuplicates Tracking 224558 as yet unmatched pairs. 38640 records in RAM.
INFO 2026-06-08 09:08:02 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr17:45,439,502
INFO 2026-06-08 09:08:02 MarkDuplicates Tracking 222796 as yet unmatched pairs. 36877 records in RAM.
INFO 2026-06-08 09:08:04 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr17:47,827,155
INFO 2026-06-08 09:08:04 MarkDuplicates Tracking 221870 as yet unmatched pairs. 35951 records in RAM.
INFO 2026-06-08 09:08:06 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,073,982
INFO 2026-06-08 09:08:06 MarkDuplicates Tracking 219710 as yet unmatched pairs. 33778 records in RAM.
INFO 2026-06-08 09:08:08 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 2s. Last read position: chr17:51,079,654
INFO 2026-06-08 09:08:08 MarkDuplicates Tracking 218263 as yet unmatched pairs. 32329 records in RAM.
INFO 2026-06-08 09:08:10 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 2s. Last read position: chr17:58,491,793
INFO 2026-06-08 09:08:10 MarkDuplicates Tracking 216636 as yet unmatched pairs. 30700 records in RAM.
INFO 2026-06-08 09:08:12 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:19:30s. Time for last 1,000,000: 1s. Last read position: chr17:59,668,771
INFO 2026-06-08 09:08:12 MarkDuplicates Tracking 219042 as yet unmatched pairs. 33106 records in RAM.
INFO 2026-06-08 09:08:14 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 2s. Last read position: chr17:60,180,598
INFO 2026-06-08 09:08:14 MarkDuplicates Tracking 213035 as yet unmatched pairs. 27095 records in RAM.
INFO 2026-06-08 09:08:16 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr17:63,589,049
INFO 2026-06-08 09:08:16 MarkDuplicates Tracking 211920 as yet unmatched pairs. 25974 records in RAM.
INFO 2026-06-08 09:08:18 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 2s. Last read position: chr17:64,522,670
INFO 2026-06-08 09:08:18 MarkDuplicates Tracking 209668 as yet unmatched pairs. 23717 records in RAM.
INFO 2026-06-08 09:08:20 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr17:67,959,538
INFO 2026-06-08 09:08:20 MarkDuplicates Tracking 208576 as yet unmatched pairs. 22623 records in RAM.
INFO 2026-06-08 09:08:21 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:19:39s. Time for last 1,000,000: 1s. Last read position: chr17:68,528,939
INFO 2026-06-08 09:08:21 MarkDuplicates Tracking 209297 as yet unmatched pairs. 23344 records in RAM.
INFO 2026-06-08 09:08:23 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr17:75,049,317
INFO 2026-06-08 09:08:23 MarkDuplicates Tracking 204990 as yet unmatched pairs. 19035 records in RAM.
INFO 2026-06-08 09:08:26 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr17:75,876,469
INFO 2026-06-08 09:08:26 MarkDuplicates Tracking 203262 as yet unmatched pairs. 17305 records in RAM.
INFO 2026-06-08 09:08:27 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr17:76,869,063
INFO 2026-06-08 09:08:27 MarkDuplicates Tracking 201602 as yet unmatched pairs. 15641 records in RAM.
INFO 2026-06-08 09:08:29 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr17:78,692,421
INFO 2026-06-08 09:08:29 MarkDuplicates Tracking 199411 as yet unmatched pairs. 13444 records in RAM.
INFO 2026-06-08 09:08:31 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr17:79,940,983
INFO 2026-06-08 09:08:31 MarkDuplicates Tracking 199221 as yet unmatched pairs. 13253 records in RAM.
INFO 2026-06-08 09:08:33 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 2s. Last read position: chr17:80,374,538
INFO 2026-06-08 09:08:33 MarkDuplicates Tracking 196114 as yet unmatched pairs. 10146 records in RAM.
INFO 2026-06-08 09:08:35 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 1s. Last read position: chr17:81,447,247
INFO 2026-06-08 09:08:35 MarkDuplicates Tracking 195766 as yet unmatched pairs. 9796 records in RAM.
INFO 2026-06-08 09:08:36 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr17:81,666,387
INFO 2026-06-08 09:08:36 MarkDuplicates Tracking 192141 as yet unmatched pairs. 6170 records in RAM.
INFO 2026-06-08 09:08:38 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr17:81,994,820
INFO 2026-06-08 09:08:38 MarkDuplicates Tracking 190465 as yet unmatched pairs. 4489 records in RAM.
INFO 2026-06-08 09:08:40 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr17:82,183,930
INFO 2026-06-08 09:08:40 MarkDuplicates Tracking 187669 as yet unmatched pairs. 1689 records in RAM.
INFO 2026-06-08 09:08:42 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 1s. Last read position: chr18:2,951,178
INFO 2026-06-08 09:08:42 MarkDuplicates Tracking 185647 as yet unmatched pairs. 8974 records in RAM.
INFO 2026-06-08 09:08:43 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr18:14,837,619
INFO 2026-06-08 09:08:43 MarkDuplicates Tracking 184107 as yet unmatched pairs. 7431 records in RAM.
INFO 2026-06-08 09:08:45 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr18:32,412,717
INFO 2026-06-08 09:08:45 MarkDuplicates Tracking 182695 as yet unmatched pairs. 6015 records in RAM.
INFO 2026-06-08 09:08:47 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr18:49,489,371
INFO 2026-06-08 09:08:47 MarkDuplicates Tracking 187235 as yet unmatched pairs. 10555 records in RAM.
INFO 2026-06-08 09:08:49 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 2s. Last read position: chr18:59,152,546
INFO 2026-06-08 09:08:49 MarkDuplicates Tracking 179776 as yet unmatched pairs. 3092 records in RAM.
INFO 2026-06-08 09:08:51 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr18:76,442,817
INFO 2026-06-08 09:08:51 MarkDuplicates Tracking 177851 as yet unmatched pairs. 1149 records in RAM.
INFO 2026-06-08 09:08:53 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 2s. Last read position: chr19:680,259
INFO 2026-06-08 09:08:53 MarkDuplicates Tracking 175868 as yet unmatched pairs. 72020 records in RAM.
INFO 2026-06-08 09:08:55 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 2s. Last read position: chr19:1,251,466
INFO 2026-06-08 09:08:55 MarkDuplicates Tracking 174849 as yet unmatched pairs. 71000 records in RAM.
INFO 2026-06-08 09:08:57 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:20:15s. Time for last 1,000,000: 1s. Last read position: chr19:1,556,036
INFO 2026-06-08 09:08:57 MarkDuplicates Tracking 171525 as yet unmatched pairs. 67676 records in RAM.
INFO 2026-06-08 09:08:59 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr19:2,269,574
INFO 2026-06-08 09:08:59 MarkDuplicates Tracking 169752 as yet unmatched pairs. 65903 records in RAM.
INFO 2026-06-08 09:09:00 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:20:18s. Time for last 1,000,000: 1s. Last read position: chr19:3,585,764
INFO 2026-06-08 09:09:00 MarkDuplicates Tracking 166663 as yet unmatched pairs. 62814 records in RAM.
INFO 2026-06-08 09:09:02 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:20:20s. Time for last 1,000,000: 1s. Last read position: chr19:5,206,760
INFO 2026-06-08 09:09:02 MarkDuplicates Tracking 165507 as yet unmatched pairs. 61657 records in RAM.
INFO 2026-06-08 09:09:04 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr19:5,788,053
INFO 2026-06-08 09:09:04 MarkDuplicates Tracking 163138 as yet unmatched pairs. 59286 records in RAM.
INFO 2026-06-08 09:09:06 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:20:23s. Time for last 1,000,000: 1s. Last read position: chr19:7,516,220
INFO 2026-06-08 09:09:06 MarkDuplicates Tracking 161064 as yet unmatched pairs. 57211 records in RAM.
INFO 2026-06-08 09:09:07 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr19:9,566,686
INFO 2026-06-08 09:09:07 MarkDuplicates Tracking 159279 as yet unmatched pairs. 55425 records in RAM.
INFO 2026-06-08 09:09:09 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr19:10,680,357
INFO 2026-06-08 09:09:09 MarkDuplicates Tracking 157614 as yet unmatched pairs. 53760 records in RAM.
INFO 2026-06-08 09:09:11 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:20:29s. Time for last 1,000,000: 1s. Last read position: chr19:11,447,700
INFO 2026-06-08 09:09:11 MarkDuplicates Tracking 156461 as yet unmatched pairs. 52605 records in RAM.
INFO 2026-06-08 09:09:13 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 2s. Last read position: chr19:12,797,096
INFO 2026-06-08 09:09:13 MarkDuplicates Tracking 153573 as yet unmatched pairs. 49715 records in RAM.
INFO 2026-06-08 09:09:15 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr19:14,388,486
INFO 2026-06-08 09:09:15 MarkDuplicates Tracking 152050 as yet unmatched pairs. 48192 records in RAM.
INFO 2026-06-08 09:09:17 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 2s. Last read position: chr19:15,192,357
INFO 2026-06-08 09:09:17 MarkDuplicates Tracking 149294 as yet unmatched pairs. 45434 records in RAM.
INFO 2026-06-08 09:09:20 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 2s. Last read position: chr19:16,327,071
INFO 2026-06-08 09:09:20 MarkDuplicates Tracking 147071 as yet unmatched pairs. 43211 records in RAM.
INFO 2026-06-08 09:09:22 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr19:17,404,381
INFO 2026-06-08 09:09:22 MarkDuplicates Tracking 146364 as yet unmatched pairs. 42503 records in RAM.
INFO 2026-06-08 09:09:23 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr19:18,177,157
INFO 2026-06-08 09:09:23 MarkDuplicates Tracking 143947 as yet unmatched pairs. 40085 records in RAM.
INFO 2026-06-08 09:09:26 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 2s. Last read position: chr19:18,855,019
INFO 2026-06-08 09:09:26 MarkDuplicates Tracking 141454 as yet unmatched pairs. 37589 records in RAM.
INFO 2026-06-08 09:09:27 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr19:29,208,099
INFO 2026-06-08 09:09:27 MarkDuplicates Tracking 140062 as yet unmatched pairs. 36194 records in RAM.
INFO 2026-06-08 09:09:29 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr19:35,013,556
INFO 2026-06-08 09:09:29 MarkDuplicates Tracking 138612 as yet unmatched pairs. 34743 records in RAM.
INFO 2026-06-08 09:09:31 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr19:35,730,780
INFO 2026-06-08 09:09:31 MarkDuplicates Tracking 135664 as yet unmatched pairs. 31795 records in RAM.
INFO 2026-06-08 09:09:33 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr19:38,647,831
INFO 2026-06-08 09:09:33 MarkDuplicates Tracking 134791 as yet unmatched pairs. 30921 records in RAM.
INFO 2026-06-08 09:09:35 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr19:39,433,386
INFO 2026-06-08 09:09:35 MarkDuplicates Tracking 145947 as yet unmatched pairs. 42074 records in RAM.
INFO 2026-06-08 09:09:37 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr19:40,326,401
INFO 2026-06-08 09:09:37 MarkDuplicates Tracking 130099 as yet unmatched pairs. 26224 records in RAM.
INFO 2026-06-08 09:09:39 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 2s. Last read position: chr19:41,869,123
INFO 2026-06-08 09:09:39 MarkDuplicates Tracking 135217 as yet unmatched pairs. 31341 records in RAM.
INFO 2026-06-08 09:09:40 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr19:42,287,930
INFO 2026-06-08 09:09:40 MarkDuplicates Tracking 127029 as yet unmatched pairs. 23153 records in RAM.
INFO 2026-06-08 09:09:42 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr19:44,175,985
INFO 2026-06-08 09:09:42 MarkDuplicates Tracking 124083 as yet unmatched pairs. 20206 records in RAM.
INFO 2026-06-08 09:09:44 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 2s. Last read position: chr19:45,522,116
INFO 2026-06-08 09:09:44 MarkDuplicates Tracking 121772 as yet unmatched pairs. 17892 records in RAM.
INFO 2026-06-08 09:09:46 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr19:47,066,349
INFO 2026-06-08 09:09:46 MarkDuplicates Tracking 119795 as yet unmatched pairs. 15915 records in RAM.
INFO 2026-06-08 09:09:48 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr19:48,478,499
INFO 2026-06-08 09:09:48 MarkDuplicates Tracking 118082 as yet unmatched pairs. 14200 records in RAM.
INFO 2026-06-08 09:09:50 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 2s. Last read position: chr19:49,107,882
INFO 2026-06-08 09:09:50 MarkDuplicates Tracking 116495 as yet unmatched pairs. 12613 records in RAM.
INFO 2026-06-08 09:09:53 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 3s. Last read position: chr19:49,597,656
INFO 2026-06-08 09:09:53 MarkDuplicates Tracking 114817 as yet unmatched pairs. 10931 records in RAM.
INFO 2026-06-08 09:09:55 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 1s. Last read position: chr19:50,416,430
INFO 2026-06-08 09:09:55 MarkDuplicates Tracking 112336 as yet unmatched pairs. 8450 records in RAM.
INFO 2026-06-08 09:09:57 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr19:54,155,328
INFO 2026-06-08 09:09:57 MarkDuplicates Tracking 110543 as yet unmatched pairs. 6648 records in RAM.
INFO 2026-06-08 09:09:59 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 1s. Last read position: chr19:55,302,697
INFO 2026-06-08 09:09:59 MarkDuplicates Tracking 108804 as yet unmatched pairs. 4905 records in RAM.
INFO 2026-06-08 09:10:01 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chr19:56,555,028
INFO 2026-06-08 09:10:01 MarkDuplicates Tracking 106714 as yet unmatched pairs. 2814 records in RAM.
INFO 2026-06-08 09:10:02 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr19:58,387,329
INFO 2026-06-08 09:10:02 MarkDuplicates Tracking 115176 as yet unmatched pairs. 11276 records in RAM.
INFO 2026-06-08 09:10:05 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 2s. Last read position: chr20:1,125,596
INFO 2026-06-08 09:10:05 MarkDuplicates Tracking 104212 as yet unmatched pairs. 30593 records in RAM.
INFO 2026-06-08 09:10:08 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:21:25s. Time for last 1,000,000: 2s. Last read position: chr20:3,213,333
INFO 2026-06-08 09:10:08 MarkDuplicates Tracking 102474 as yet unmatched pairs. 28855 records in RAM.
INFO 2026-06-08 09:10:09 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr20:10,413,750
INFO 2026-06-08 09:10:09 MarkDuplicates Tracking 99849 as yet unmatched pairs. 26220 records in RAM.
INFO 2026-06-08 09:10:11 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr20:23,635,289
INFO 2026-06-08 09:10:11 MarkDuplicates Tracking 99168 as yet unmatched pairs. 25539 records in RAM.
INFO 2026-06-08 09:10:13 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr20:32,433,327
INFO 2026-06-08 09:10:13 MarkDuplicates Tracking 96489 as yet unmatched pairs. 22858 records in RAM.
INFO 2026-06-08 09:10:15 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chr20:35,142,447
INFO 2026-06-08 09:10:15 MarkDuplicates Tracking 94820 as yet unmatched pairs. 21182 records in RAM.
INFO 2026-06-08 09:10:16 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:21:34s. Time for last 1,000,000: 1s. Last read position: chr20:36,815,310
INFO 2026-06-08 09:10:16 MarkDuplicates Tracking 93472 as yet unmatched pairs. 19833 records in RAM.
INFO 2026-06-08 09:10:18 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 1s. Last read position: chr20:41,204,382
INFO 2026-06-08 09:10:18 MarkDuplicates Tracking 91215 as yet unmatched pairs. 17576 records in RAM.
INFO 2026-06-08 09:10:21 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 2s. Last read position: chr20:45,363,612
INFO 2026-06-08 09:10:21 MarkDuplicates Tracking 90559 as yet unmatched pairs. 16918 records in RAM.
INFO 2026-06-08 09:10:23 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 2s. Last read position: chr20:46,062,874
INFO 2026-06-08 09:10:23 MarkDuplicates Tracking 87865 as yet unmatched pairs. 14224 records in RAM.
INFO 2026-06-08 09:10:25 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chr20:49,233,312
INFO 2026-06-08 09:10:25 MarkDuplicates Tracking 86576 as yet unmatched pairs. 12935 records in RAM.
INFO 2026-06-08 09:10:27 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:21:44s. Time for last 1,000,000: 1s. Last read position: chr20:53,575,747
INFO 2026-06-08 09:10:27 MarkDuplicates Tracking 84614 as yet unmatched pairs. 10972 records in RAM.
INFO 2026-06-08 09:10:28 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr20:58,903,547
INFO 2026-06-08 09:10:28 MarkDuplicates Tracking 86188 as yet unmatched pairs. 12545 records in RAM.
INFO 2026-06-08 09:10:30 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr20:62,143,226
INFO 2026-06-08 09:10:30 MarkDuplicates Tracking 80818 as yet unmatched pairs. 7175 records in RAM.
INFO 2026-06-08 09:10:32 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:21:50s. Time for last 1,000,000: 1s. Last read position: chr20:62,854,077
INFO 2026-06-08 09:10:32 MarkDuplicates Tracking 78364 as yet unmatched pairs. 4718 records in RAM.
INFO 2026-06-08 09:10:34 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:21:52s. Time for last 1,000,000: 1s. Last read position: chr20:63,565,305
INFO 2026-06-08 09:10:34 MarkDuplicates Tracking 76454 as yet unmatched pairs. 2807 records in RAM.
INFO 2026-06-08 09:10:35 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:21:53s. Time for last 1,000,000: 1s. Last read position: chr20:64,027,646
INFO 2026-06-08 09:10:35 MarkDuplicates Tracking 74296 as yet unmatched pairs. 648 records in RAM.
INFO 2026-06-08 09:10:38 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:21:56s. Time for last 1,000,000: 2s. Last read position: chr21:8,258,936
INFO 2026-06-08 09:10:38 MarkDuplicates Tracking 72984 as yet unmatched pairs. 8078 records in RAM.
INFO 2026-06-08 09:10:40 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:21:58s. Time for last 1,000,000: 1s. Last read position: chr21:8,986,699
INFO 2026-06-08 09:10:40 MarkDuplicates Tracking 71891 as yet unmatched pairs. 6985 records in RAM.
INFO 2026-06-08 09:10:42 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:21:59s. Time for last 1,000,000: 1s. Last read position: chr21:33,550,617
INFO 2026-06-08 09:10:42 MarkDuplicates Tracking 71137 as yet unmatched pairs. 6225 records in RAM.
INFO 2026-06-08 09:10:43 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:22:01s. Time for last 1,000,000: 1s. Last read position: chr21:41,237,667
INFO 2026-06-08 09:10:43 MarkDuplicates Tracking 69294 as yet unmatched pairs. 4382 records in RAM.
INFO 2026-06-08 09:10:45 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:22:03s. Time for last 1,000,000: 1s. Last read position: chr21:45,182,618
INFO 2026-06-08 09:10:45 MarkDuplicates Tracking 66789 as yet unmatched pairs. 1877 records in RAM.
INFO 2026-06-08 09:10:47 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:22:05s. Time for last 1,000,000: 1s. Last read position: chr22:17,655,797
INFO 2026-06-08 09:10:47 MarkDuplicates Tracking 65203 as yet unmatched pairs. 30286 records in RAM.
INFO 2026-06-08 09:10:49 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:22:07s. Time for last 1,000,000: 1s. Last read position: chr22:19,962,535
INFO 2026-06-08 09:10:49 MarkDuplicates Tracking 63939 as yet unmatched pairs. 29015 records in RAM.
INFO 2026-06-08 09:10:51 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:22:09s. Time for last 1,000,000: 2s. Last read position: chr22:20,586,590
INFO 2026-06-08 09:10:51 MarkDuplicates Tracking 62672 as yet unmatched pairs. 27748 records in RAM.
INFO 2026-06-08 09:10:54 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:22:11s. Time for last 1,000,000: 2s. Last read position: chr22:22,548,401
INFO 2026-06-08 09:10:54 MarkDuplicates Tracking 66085 as yet unmatched pairs. 31157 records in RAM.
INFO 2026-06-08 09:10:56 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:22:13s. Time for last 1,000,000: 2s. Last read position: chr22:23,894,511
INFO 2026-06-08 09:10:56 MarkDuplicates Tracking 59271 as yet unmatched pairs. 24339 records in RAM.
INFO 2026-06-08 09:10:57 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:22:15s. Time for last 1,000,000: 1s. Last read position: chr22:27,933,842
INFO 2026-06-08 09:10:57 MarkDuplicates Tracking 55504 as yet unmatched pairs. 20567 records in RAM.
INFO 2026-06-08 09:10:59 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:22:17s. Time for last 1,000,000: 1s. Last read position: chr22:29,531,921
INFO 2026-06-08 09:10:59 MarkDuplicates Tracking 54207 as yet unmatched pairs. 19270 records in RAM.
INFO 2026-06-08 09:11:01 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:22:19s. Time for last 1,000,000: 1s. Last read position: chr22:31,944,712
INFO 2026-06-08 09:11:01 MarkDuplicates Tracking 52283 as yet unmatched pairs. 17345 records in RAM.
INFO 2026-06-08 09:11:03 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:22:21s. Time for last 1,000,000: 1s. Last read position: chr22:37,024,632
INFO 2026-06-08 09:11:03 MarkDuplicates Tracking 50927 as yet unmatched pairs. 15989 records in RAM.
INFO 2026-06-08 09:11:05 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:22:23s. Time for last 1,000,000: 2s. Last read position: chr22:37,919,260
INFO 2026-06-08 09:11:05 MarkDuplicates Tracking 48429 as yet unmatched pairs. 13491 records in RAM.
INFO 2026-06-08 09:11:07 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:22:25s. Time for last 1,000,000: 1s. Last read position: chr22:38,224,784
INFO 2026-06-08 09:11:07 MarkDuplicates Tracking 46989 as yet unmatched pairs. 12046 records in RAM.
INFO 2026-06-08 09:11:09 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:22:27s. Time for last 1,000,000: 2s. Last read position: chr22:39,040,917
INFO 2026-06-08 09:11:09 MarkDuplicates Tracking 44485 as yet unmatched pairs. 9542 records in RAM.
INFO 2026-06-08 09:11:11 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:22:29s. Time for last 1,000,000: 1s. Last read position: chr22:41,125,875
INFO 2026-06-08 09:11:11 MarkDuplicates Tracking 43536 as yet unmatched pairs. 8587 records in RAM.
INFO 2026-06-08 09:11:12 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:22:30s. Time for last 1,000,000: 1s. Last read position: chr22:42,067,789
INFO 2026-06-08 09:11:12 MarkDuplicates Tracking 41327 as yet unmatched pairs. 6378 records in RAM.
INFO 2026-06-08 09:11:14 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:22:32s. Time for last 1,000,000: 1s. Last read position: chr22:46,215,187
INFO 2026-06-08 09:11:14 MarkDuplicates Tracking 39437 as yet unmatched pairs. 4487 records in RAM.
INFO 2026-06-08 09:11:16 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:22:34s. Time for last 1,000,000: 1s. Last read position: chr22:50,283,964
INFO 2026-06-08 09:11:16 MarkDuplicates Tracking 37432 as yet unmatched pairs. 2482 records in RAM.
INFO 2026-06-08 09:11:18 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:22:36s. Time for last 1,000,000: 1s. Last read position: chrX:334,427
INFO 2026-06-08 09:11:18 MarkDuplicates Tracking 34930 as yet unmatched pairs. 30721 records in RAM.
INFO 2026-06-08 09:11:19 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:22:37s. Time for last 1,000,000: 1s. Last read position: chrX:10,117,305
INFO 2026-06-08 09:11:19 MarkDuplicates Tracking 33983 as yet unmatched pairs. 29774 records in RAM.
INFO 2026-06-08 09:11:22 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:22:40s. Time for last 1,000,000: 2s. Last read position: chrX:21,856,391
INFO 2026-06-08 09:11:22 MarkDuplicates Tracking 31663 as yet unmatched pairs. 27447 records in RAM.
INFO 2026-06-08 09:11:24 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:22:42s. Time for last 1,000,000: 1s. Last read position: chrX:40,073,443
INFO 2026-06-08 09:11:24 MarkDuplicates Tracking 30401 as yet unmatched pairs. 26183 records in RAM.
INFO 2026-06-08 09:11:25 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:22:43s. Time for last 1,000,000: 1s. Last read position: chrX:47,185,132
INFO 2026-06-08 09:11:25 MarkDuplicates Tracking 28714 as yet unmatched pairs. 24496 records in RAM.
INFO 2026-06-08 09:11:27 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:22:45s. Time for last 1,000,000: 1s. Last read position: chrX:48,904,705
INFO 2026-06-08 09:11:27 MarkDuplicates Tracking 27163 as yet unmatched pairs. 22943 records in RAM.
INFO 2026-06-08 09:11:28 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:22:46s. Time for last 1,000,000: 1s. Last read position: chrX:53,215,799
INFO 2026-06-08 09:11:28 MarkDuplicates Tracking 24988 as yet unmatched pairs. 20768 records in RAM.
INFO 2026-06-08 09:11:30 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:22:48s. Time for last 1,000,000: 1s. Last read position: chrX:54,455,478
INFO 2026-06-08 09:11:30 MarkDuplicates Tracking 23399 as yet unmatched pairs. 19179 records in RAM.
INFO 2026-06-08 09:11:32 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:22:49s. Time for last 1,000,000: 1s. Last read position: chrX:70,963,154
INFO 2026-06-08 09:11:32 MarkDuplicates Tracking 21694 as yet unmatched pairs. 17473 records in RAM.
INFO 2026-06-08 09:11:33 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:22:51s. Time for last 1,000,000: 1s. Last read position: chrX:71,554,575
INFO 2026-06-08 09:11:33 MarkDuplicates Tracking 21176 as yet unmatched pairs. 16955 records in RAM.
INFO 2026-06-08 09:11:35 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:22:53s. Time for last 1,000,000: 1s. Last read position: chrX:77,663,501
INFO 2026-06-08 09:11:35 MarkDuplicates Tracking 19285 as yet unmatched pairs. 15064 records in RAM.
INFO 2026-06-08 09:11:36 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:22:54s. Time for last 1,000,000: 1s. Last read position: chrX:101,395,335
INFO 2026-06-08 09:11:36 MarkDuplicates Tracking 17512 as yet unmatched pairs. 13291 records in RAM.
INFO 2026-06-08 09:11:38 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:22:56s. Time for last 1,000,000: 1s. Last read position: chrX:111,619,761
INFO 2026-06-08 09:11:38 MarkDuplicates Tracking 15169 as yet unmatched pairs. 10948 records in RAM.
INFO 2026-06-08 09:11:40 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:22:58s. Time for last 1,000,000: 1s. Last read position: chrX:120,560,541
INFO 2026-06-08 09:11:40 MarkDuplicates Tracking 14322 as yet unmatched pairs. 10101 records in RAM.
INFO 2026-06-08 09:11:41 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:22:59s. Time for last 1,000,000: 1s. Last read position: chrX:136,206,450
INFO 2026-06-08 09:11:41 MarkDuplicates Tracking 12517 as yet unmatched pairs. 8296 records in RAM.
INFO 2026-06-08 09:11:43 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:23:01s. Time for last 1,000,000: 1s. Last read position: chrX:153,688,628
INFO 2026-06-08 09:11:43 MarkDuplicates Tracking 12136 as yet unmatched pairs. 7915 records in RAM.
INFO 2026-06-08 09:11:45 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:23:03s. Time for last 1,000,000: 2s. Last read position: chrX:153,941,511
INFO 2026-06-08 09:11:45 MarkDuplicates Tracking 10002 as yet unmatched pairs. 5781 records in RAM.
INFO 2026-06-08 09:11:48 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:23:06s. Time for last 1,000,000: 2s. Last read position: chrX:154,365,483
INFO 2026-06-08 09:11:48 MarkDuplicates Tracking 7204 as yet unmatched pairs. 2983 records in RAM.
INFO 2026-06-08 09:11:49 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:23:07s. Time for last 1,000,000: 1s. Last read position: chrX:154,653,246
INFO 2026-06-08 09:11:49 MarkDuplicates Tracking 11404 as yet unmatched pairs. 7183 records in RAM.
INFO 2026-06-08 09:11:51 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:23:09s. Time for last 1,000,000: 1s. Last read position: GL000220.1:116,323
INFO 2026-06-08 09:11:51 MarkDuplicates Tracking 2907 as yet unmatched pairs. 62 records in RAM.
INFO 2026-06-08 09:11:52 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:23:10s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,055
INFO 2026-06-08 09:11:52 MarkDuplicates Tracking 895 as yet unmatched pairs. 872 records in RAM.
INFO 2026-06-08 09:11:53 MarkDuplicates Read 633786273 records. 0 pairs never matched.
INFO 2026-06-08 09:12:43 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139376; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:12:43 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:12:50 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:12:50 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:12:56 OpticalDuplicateFinder Large duplicate set. size = 1178
INFO 2026-06-08 09:12:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,796
INFO 2026-06-08 09:13:17 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 09:13:17 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,950
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,238
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:13:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,991
INFO 2026-06-08 09:13:55 OpticalDuplicateFinder Large duplicate set. size = 1448
INFO 2026-06-08 09:13:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,691
INFO 2026-06-08 09:14:26 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:14:26 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:15:44 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:15:47 MarkDuplicates After generateDuplicateIndexes freeMemory: 203987264; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:15:47 MarkDuplicates Marking 309560086 records as duplicates.
INFO 2026-06-08 09:15:47 MarkDuplicates Found 23185142 optical duplicate clusters.
INFO 2026-06-08 09:15:47 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:16:07 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:19s. Time for last 10,000,000: 19s. Last read position: chr1:23,794,475
INFO 2026-06-08 09:16:23 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:36s. Time for last 10,000,000: 16s. Last read position: chr1:54,875,103
INFO 2026-06-08 09:16:38 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:51s. Time for last 10,000,000: 15s. Last read position: chr1:119,916,536
INFO 2026-06-08 09:16:55 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:07s. Time for last 10,000,000: 16s. Last read position: chr1:152,213,992
INFO 2026-06-08 09:17:11 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:23s. Time for last 10,000,000: 16s. Last read position: chr1:156,293,014
INFO 2026-06-08 09:17:27 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:40s. Time for last 10,000,000: 16s. Last read position: chr1:182,866,574
INFO 2026-06-08 09:17:46 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:59s. Time for last 10,000,000: 18s. Last read position: chr1:222,676,193
INFO 2026-06-08 09:18:04 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:17s. Time for last 10,000,000: 18s. Last read position: chr2:8,747,928
INFO 2026-06-08 09:18:24 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:37s. Time for last 10,000,000: 19s. Last read position: chr2:43,231,058
INFO 2026-06-08 09:18:43 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:56s. Time for last 10,000,000: 19s. Last read position: chr2:96,550,572
INFO 2026-06-08 09:19:04 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:16s. Time for last 10,000,000: 20s. Last read position: chr2:178,592,864
INFO 2026-06-08 09:19:24 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:37s. Time for last 10,000,000: 20s. Last read position: chr2:230,873,443
INFO 2026-06-08 09:19:44 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:57s. Time for last 10,000,000: 19s. Last read position: chr3:39,408,612
INFO 2026-06-08 09:20:05 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:18s. Time for last 10,000,000: 21s. Last read position: chr3:51,994,069
INFO 2026-06-08 09:20:26 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:39s. Time for last 10,000,000: 21s. Last read position: chr3:127,022,174
INFO 2026-06-08 09:20:48 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:05:01s. Time for last 10,000,000: 22s. Last read position: chr3:186,105,341
INFO 2026-06-08 09:21:09 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:05:22s. Time for last 10,000,000: 21s. Last read position: chr4:78,181,465
INFO 2026-06-08 09:21:27 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:40s. Time for last 10,000,000: 17s. Last read position: chr5:60,638,819
INFO 2026-06-08 09:21:43 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:56s. Time for last 10,000,000: 16s. Last read position: chr5:141,415,171
INFO 2026-06-08 09:21:59 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:06:12s. Time for last 10,000,000: 15s. Last read position: chr5:179,716,193
INFO 2026-06-08 09:22:15 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:28s. Time for last 10,000,000: 15s. Last read position: chr6:30,649,729
INFO 2026-06-08 09:22:30 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:43s. Time for last 10,000,000: 15s. Last read position: chr6:35,469,447
INFO 2026-06-08 09:22:46 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 15s. Last read position: chr6:134,170,341
INFO 2026-06-08 09:23:02 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 15s. Last read position: chr7:6,691,110
INFO 2026-06-08 09:23:18 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:31s. Time for last 10,000,000: 16s. Last read position: chr7:54,757,543
INFO 2026-06-08 09:23:33 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:46s. Time for last 10,000,000: 15s. Last read position: chr7:92,100,863
INFO 2026-06-08 09:23:49 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:08:02s. Time for last 10,000,000: 15s. Last read position: chr7:102,561,057
INFO 2026-06-08 09:24:05 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:17s. Time for last 10,000,000: 15s. Last read position: chr7:129,203,452
INFO 2026-06-08 09:24:20 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:33s. Time for last 10,000,000: 15s. Last read position: chr8:11,808,822
INFO 2026-06-08 09:24:37 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:50s. Time for last 10,000,000: 16s. Last read position: chr8:82,292,084
INFO 2026-06-08 09:24:54 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:07s. Time for last 10,000,000: 17s. Last read position: chr9:6,013,500
INFO 2026-06-08 09:25:13 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:26s. Time for last 10,000,000: 18s. Last read position: chr9:124,809,932
INFO 2026-06-08 09:25:32 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:45s. Time for last 10,000,000: 19s. Last read position: chr10:17,235,231
INFO 2026-06-08 09:25:51 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:10:04s. Time for last 10,000,000: 19s. Last read position: chr10:100,245,801
INFO 2026-06-08 09:26:10 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:23s. Time for last 10,000,000: 18s. Last read position: chr11:19,948,992
INFO 2026-06-08 09:26:29 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:42s. Time for last 10,000,000: 18s. Last read position: chr11:65,554,145
INFO 2026-06-08 09:26:48 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:11:01s. Time for last 10,000,000: 18s. Last read position: chr11:118,597,854
INFO 2026-06-08 09:27:06 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:19s. Time for last 10,000,000: 18s. Last read position: chr12:46,364,495
INFO 2026-06-08 09:27:26 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:39s. Time for last 10,000,000: 19s. Last read position: chr12:55,957,451
INFO 2026-06-08 09:27:44 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:57s. Time for last 10,000,000: 18s. Last read position: chr12:71,620,214
INFO 2026-06-08 09:28:02 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:15s. Time for last 10,000,000: 17s. Last read position: chr12:123,584,635
INFO 2026-06-08 09:28:22 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:34s. Time for last 10,000,000: 19s. Last read position: chr14:20,378,222
INFO 2026-06-08 09:28:41 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:54s. Time for last 10,000,000: 19s. Last read position: chr14:77,027,701
INFO 2026-06-08 09:28:58 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:11s. Time for last 10,000,000: 17s. Last read position: chr15:22,564,429
INFO 2026-06-08 09:29:17 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:30s. Time for last 10,000,000: 18s. Last read position: chr15:52,351,447
INFO 2026-06-08 09:29:35 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 17s. Last read position: chr15:78,806,951
INFO 2026-06-08 09:29:52 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:05s. Time for last 10,000,000: 17s. Last read position: chr16:5,091,801
INFO 2026-06-08 09:30:10 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:23s. Time for last 10,000,000: 17s. Last read position: chr16:29,491,601
INFO 2026-06-08 09:30:27 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:40s. Time for last 10,000,000: 17s. Last read position: chr16:84,095,732
INFO 2026-06-08 09:30:45 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:58s. Time for last 10,000,000: 17s. Last read position: chr17:16,427,479
INFO 2026-06-08 09:31:02 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:15:15s. Time for last 10,000,000: 17s. Last read position: chr17:44,004,911
INFO 2026-06-08 09:31:19 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:32s. Time for last 10,000,000: 16s. Last read position: chr17:67,959,538
INFO 2026-06-08 09:31:35 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:48s. Time for last 10,000,000: 15s. Last read position: chr17:81,994,820
INFO 2026-06-08 09:31:50 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:16:03s. Time for last 10,000,000: 15s. Last read position: chr19:1,556,036
INFO 2026-06-08 09:32:06 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:16:19s. Time for last 10,000,000: 15s. Last read position: chr19:14,388,486
INFO 2026-06-08 09:32:21 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:34s. Time for last 10,000,000: 15s. Last read position: chr19:39,433,386
INFO 2026-06-08 09:32:37 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:50s. Time for last 10,000,000: 15s. Last read position: chr19:50,416,430
INFO 2026-06-08 09:32:52 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:17:05s. Time for last 10,000,000: 15s. Last read position: chr20:35,142,447
INFO 2026-06-08 09:33:08 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:21s. Time for last 10,000,000: 15s. Last read position: chr20:63,565,305
INFO 2026-06-08 09:33:23 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:36s. Time for last 10,000,000: 15s. Last read position: chr22:22,548,401
INFO 2026-06-08 09:33:38 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:51s. Time for last 10,000,000: 15s. Last read position: chr22:42,067,789
INFO 2026-06-08 09:33:54 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:18:07s. Time for last 10,000,000: 15s. Last read position: chrX:54,455,478
INFO 2026-06-08 09:34:09 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:22s. Time for last 10,000,000: 14s. Last read position: chrX:154,365,483
INFO 2026-06-08 09:34:19 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:34:19 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:34:19 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:34:20 MarkDuplicates Before output close freeMemory: 203942648; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:34:20 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:34:20 MarkDuplicates After output close freeMemory: 104188072; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:34:20 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 45.66 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory