File Info

Filename
output/Logs/Info.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/83979af9c418aad78691ede56e82dc/output/Logs/Info.log
Size
4.2 KB
Attempt
2026-06-08T06:21:29Z thread 426 Sample sheet being processed by common lib? Yes
2026-06-08T06:21:29Z thread 426 SampleSheet Settings: 
2026-06-08T06:21:29Z thread 426   FastqCompressionFormat = gzip
2026-06-08T06:21:29Z thread 426   NoLaneSplitting = FALSE
2026-06-08T06:21:29Z thread 426   OverrideCycles = Y151;I10;I10;Y151
2026-06-08T06:21:29Z thread 426   SoftwareVersion = 4.3.6
2026-06-08T06:21:29Z thread 426 
2026-06-08T06:21:29Z thread 426 Index Read 2 (i5): The barcode and UMI outputs will be processed and output in Reverse Complement of Sample Sheet inputs. OverrideCycles bases for this read will be interpreted in reverse.
2026-06-08T06:21:30Z thread 426 shared-thread-linux-native-asio output is disabled
2026-06-08T06:21:30Z thread 426 bcl-convert Version 4.4.6
2026-06-08T06:21:30Z thread 426 Copyright (c) 2014-2025 Illumina, Inc.
2026-06-08T06:21:30Z thread 426 Command Line: --tiles s_6 --output-directory output --bcl-input-directory rundir --sample-sheet rundir/SampleSheet.csv 
2026-06-08T06:21:30Z thread 426 Conversion Begins.
2026-06-08T06:21:30Z thread 426 Input BCL Information:
2026-06-08T06:21:30Z thread 426     Read Structure: 2026-06-08T06:21:30Z thread 426 Y1512026-06-08T06:21:30Z thread 426 ;2026-06-08T06:21:30Z thread 426 I102026-06-08T06:21:30Z thread 426 ;2026-06-08T06:21:30Z thread 426 I102026-06-08T06:21:30Z thread 426 ;2026-06-08T06:21:30Z thread 426 Y1512026-06-08T06:21:30Z thread 426 
2026-06-08T06:21:30Z thread 426     RunInfo.xml file lists: 8 lanes, 6272 tiles
2026-06-08T06:21:30Z thread 426     BCL file format: cbcl
2026-06-08T06:21:30Z thread 426     Positions file format: slocs
2026-06-08T06:21:30Z thread 426     Filter file format: filter
2026-06-08T06:21:30Z thread 426 Conversion Information:
2026-06-08T06:21:30Z thread 426     Tile filtering: converting 784/6272 tiles
2026-06-08T06:21:30Z thread 426     Sample Count for Lane 1: 96
2026-06-08T06:21:30Z thread 426     Lane 1 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:30Z thread 426     Sample Count for Lane 2: 96
2026-06-08T06:21:30Z thread 426     Lane 2 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:30Z thread 426     Sample Count for Lane 3: 96
2026-06-08T06:21:30Z thread 426     Lane 3 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:30Z thread 426     Sample Count for Lane 4: 96
2026-06-08T06:21:30Z thread 426     Lane 4 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:30Z thread 426     Sample Count for Lane 5: 96
2026-06-08T06:21:30Z thread 426     Lane 5 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:30Z thread 426     Sample Count for Lane 6: 96
2026-06-08T06:21:30Z thread 426     Sample Count for Lane 7: 96
2026-06-08T06:21:30Z thread 426     Lane 7 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:30Z thread 426     Sample Count for Lane 8: 96
2026-06-08T06:21:30Z thread 426     Lane 8 will be skipped because there are no tiles to convert (not listed in RunInfo.xml tile list?)
2026-06-08T06:21:30Z thread 426     Expected number of sample FASTQ files to be created: 192
2026-06-08T06:21:30Z thread 426 # CPU hw threads available: 64
2026-06-08T06:21:30Z thread 426 Parallel Tiles: 4. Threads Per Tile: 16
2026-06-08T06:21:30Z thread 426 SW compressors: 64
2026-06-08T06:21:30Z thread 426 SW decompressors: 32
2026-06-08T06:21:30Z thread 426 SW FASTQ compression level: 1
2026-06-08T06:37:42Z thread 426 Lane 6 Post-run Information:
2026-06-08T06:37:42Z thread 426     Total clusters: 3909662712
2026-06-08T06:37:42Z thread 426     Total Genomic Reads: 7819325424
2026-06-08T06:37:42Z thread 426     Total Genomic Input Gigabases 1180.72
2026-06-08T06:37:42Z thread 426     Minimum reads for a sample: 14336
2026-06-08T06:37:42Z thread 426     Maximum reads for a sample: 133857836
2026-06-08T06:37:42Z thread 426     Average reads per sample: 75479390.42
2026-06-08T06:37:42Z thread 426     Undetermined reads: 573303944
2026-06-08T06:37:43Z thread 426 Conversion Complete.