Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/88e481d2d30fae0d9b1fccdbbc0642/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/998c8243b45ec35c54da911fc9fb89/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/af766ab6bb0bba0d182cbbd604d983/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/af766ab6bb0bba0d182cbbd604d983/.command.run
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory