Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/cd5d92fcf4338522b7d4a17425abd1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/cd5d92fcf4338522b7d4a17425abd1/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/3eb41a68939881a22eb42c6661288b/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/187028840fdae2d5f107fea9533ebc/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
TLK2P1--AC110079.1
starfusion
FSIP1--AC013652.1
starfusion
arriba
TLK2--LINC01347
starfusion
RPS5--ZNF71
starfusion
STX16--NPEPL1
arriba
ATRX--AC074035.1
arriba
ATRX--MTND6P12
arriba
TVP23C--CDRT4
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
PCDHA10--PCDHAC2
arriba
PCDHA3--PCDHAC1
arriba
PCDHA3--PCDHA13
arriba
PCDHA3--PCDHAC2
arriba
FAM86B1--ST18
arriba
FAM86B1--ALKAL1
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/17 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   0%|          | 0/17 [00:00<?, ?it/s]
Processing TLK2P1--AC110079.1:   6%|▌         | 1/17 [00:00<00:01,  9.21it/s]
Processing FSIP1--AC013652.1:   6%|▌         | 1/17 [00:00<00:01,  9.21it/s] 
Processing FSIP1--AC013652.1:  12%|█▏        | 2/17 [00:00<00:01,  9.45it/s]
Processing TLK2--LINC01347:  12%|█▏        | 2/17 [00:00<00:01,  9.45it/s]  
Processing TLK2--LINC01347:  18%|█▊        | 3/17 [00:00<00:01,  9.38it/s]
Processing RPS5--ZNF71:  18%|█▊        | 3/17 [00:00<00:01,  9.38it/s]    
Processing RPS5--ZNF71:  24%|██▎       | 4/17 [00:00<00:01,  9.42it/s]
Processing STX16--NPEPL1:  24%|██▎       | 4/17 [00:00<00:01,  9.42it/s]
Processing STX16--NPEPL1:  29%|██▉       | 5/17 [00:00<00:01,  9.47it/s]
Processing ATRX--AC074035.1:  29%|██▉       | 5/17 [00:00<00:01,  9.47it/s]
Processing ATRX--AC074035.1:  35%|███▌      | 6/17 [00:00<00:01,  9.52it/s]
Processing ATRX--MTND6P12:  35%|███▌      | 6/17 [00:00<00:01,  9.52it/s]  
Processing ATRX--MTND6P12:  41%|████      | 7/17 [00:00<00:01,  9.54it/s]
Processing TVP23C--CDRT4:  41%|████      | 7/17 [00:00<00:01,  9.54it/s] 
Processing TVP23C--CDRT4:  47%|████▋     | 8/17 [00:00<00:00,  9.56it/s]
Processing PCDHA10--PCDHAC1:  47%|████▋     | 8/17 [00:00<00:00,  9.56it/s]
Processing PCDHA10--PCDHAC1:  53%|█████▎    | 9/17 [00:00<00:00,  9.57it/s]
Processing PCDHA10--PCDHA13:  53%|█████▎    | 9/17 [00:00<00:00,  9.57it/s]
Processing PCDHA10--PCDHA13:  59%|█████▉    | 10/17 [00:01<00:00,  9.56it/s]
Processing PCDHA10--PCDHAC2:  59%|█████▉    | 10/17 [00:01<00:00,  9.56it/s]
Processing PCDHA10--PCDHAC2:  65%|██████▍   | 11/17 [00:01<00:00,  9.56it/s]
Processing PCDHA3--PCDHAC1:  65%|██████▍   | 11/17 [00:01<00:00,  9.56it/s] 
Processing PCDHA3--PCDHAC1:  71%|███████   | 12/17 [00:01<00:00,  9.55it/s]
Processing PCDHA3--PCDHA13:  71%|███████   | 12/17 [00:01<00:00,  9.55it/s]
Processing PCDHA3--PCDHA13:  76%|███████▋  | 13/17 [00:01<00:00,  9.55it/s]
Processing PCDHA3--PCDHAC2:  76%|███████▋  | 13/17 [00:01<00:00,  9.55it/s]
Processing PCDHA3--PCDHAC2:  82%|████████▏ | 14/17 [00:01<00:00,  9.56it/s]
Processing FAM86B1--ST18:  82%|████████▏ | 14/17 [00:01<00:00,  9.56it/s]  
Processing FAM86B1--ST18:  88%|████████▊ | 15/17 [00:01<00:00,  9.55it/s]
Processing FAM86B1--ALKAL1:  88%|████████▊ | 15/17 [00:01<00:00,  9.55it/s]
Processing FAM86B1--ALKAL1:  94%|█████████▍| 16/17 [00:01<00:00,  9.55it/s]
Processing KLRC4--KLRK1:  94%|█████████▍| 16/17 [00:01<00:00,  9.55it/s]   
Processing KLRC4--KLRK1: 100%|██████████| 17/17 [00:01<00:00,  9.55it/s]
Processing KLRC4--KLRK1: 100%|██████████| 17/17 [00:01<00:00,  9.52it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory