Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/0e1675fbe29487400729342645c414/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/be021d47e7f13aea323a8413a2ede0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/be021d47e7f13aea323a8413a2ede0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/e41fa1e4d6a6ad9b495ac617934038/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory