File Info

Filename
aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/da7e7132efd959e69f6a7743d85320/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:56:29
                             Started mapping on |	Jun 08 07:59:17
                                    Finished on |	Jun 08 08:42:56
       Mapping speed, Million of reads per hour |	406.92

                          Number of input reads |	296032192
                      Average input read length |	254
                                    UNIQUE READS:
                   Uniquely mapped reads number |	281952915
                        Uniquely mapped reads % |	95.24%
                          Average mapped length |	253.96
                       Number of splices: Total |	317808145
            Number of splices: Annotated (sjdb) |	314626487
                       Number of splices: GT/AG |	315075249
                       Number of splices: GC/AG |	2147340
                       Number of splices: AT/AC |	183767
               Number of splices: Non-canonical |	401789
                      Mismatch rate per base, % |	0.26%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.07
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.51
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	9763842
             % of reads mapped to multiple loci |	3.30%
        Number of reads mapped to too many loci |	179252
             % of reads mapped to too many loci |	0.06%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	445481
       % of reads unmapped: too many mismatches |	0.15%
            Number of reads unmapped: too short |	2079823
                 % of reads unmapped: too short |	0.70%
                Number of reads unmapped: other |	175684
                     % of reads unmapped: other |	0.06%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2940553
                            % of chimeric reads |	0.99%