Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/9f73c02373a9d9e56bb9846683d1f8/aih-tih-sc-ced210-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/b1ceec9531143f470daf5f9e52e04a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/b1ceec9531143f470daf5f9e52e04a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/bfe275ba8d6fb421ad7333f9195707/aih-tih-sc-ced210-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

ls: *.sam: No such file or directory
ls: *.csi: No such file or directory
ls: *.crai: No such file or directory