Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/47682aca1a1d5c539a8b9cd02483e8/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/2eed140207f1dfe0aa42363cf40b15/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/2eed140207f1dfe0aa42363cf40b15/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1351d2-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-1351d2-R1_A23WJ53LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:37:10.083 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:37:10 GMT 2026] MarkDuplicates --INPUT aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-1351d2-R1_A23WJ53LT4_1.md.bam --METRICS_FILE aih-tih-sc-1351d2-R1_A23WJ53LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:37:10 GMT 2026] Executing as ?@nf-6a2eed140207f1dfe0aa42363cf40b15-3af4c-77925 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:37:10 MarkDuplicates Start of doWork freeMemory: 105828736; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:37:10 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:37:10 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:37:13 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:01s. Time for last 1,000,000: 1s. Last read position: chr1:1,482,255
INFO 2026-06-08 08:37:13 MarkDuplicates Tracking 2907 as yet unmatched pairs. 807 records in RAM.
INFO 2026-06-08 08:37:15 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 1s. Last read position: chr1:6,193,000
INFO 2026-06-08 08:37:15 MarkDuplicates Tracking 4614 as yet unmatched pairs. 643 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:9,128,767
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 6370 as yet unmatched pairs. 127 records in RAM.
INFO 2026-06-08 08:37:18 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 1s. Last read position: chr1:11,926,182
INFO 2026-06-08 08:37:18 MarkDuplicates Tracking 8260 as yet unmatched pairs. 110 records in RAM.
INFO 2026-06-08 08:37:20 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:16,574,550
INFO 2026-06-08 08:37:20 MarkDuplicates Tracking 10281 as yet unmatched pairs. 181 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 1s. Last read position: chr1:20,654,650
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 13930 as yet unmatched pairs. 1984 records in RAM.
INFO 2026-06-08 08:37:24 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:22,647,686
INFO 2026-06-08 08:37:24 MarkDuplicates Tracking 14457 as yet unmatched pairs. 318 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 2s. Last read position: chr1:25,543,671
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 15823 as yet unmatched pairs. 26 records in RAM.
INFO 2026-06-08 08:37:27 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:27,549,908
INFO 2026-06-08 08:37:27 MarkDuplicates Tracking 18135 as yet unmatched pairs. 458 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 1s. Last read position: chr1:32,014,264
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 19881 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:37:30 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 1s. Last read position: chr1:35,190,523
INFO 2026-06-08 08:37:30 MarkDuplicates Tracking 23459 as yet unmatched pairs. 1726 records in RAM.
INFO 2026-06-08 08:37:32 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:37,509,486
INFO 2026-06-08 08:37:32 MarkDuplicates Tracking 24220 as yet unmatched pairs. 369 records in RAM.
INFO 2026-06-08 08:37:33 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:22s. Time for last 1,000,000: 1s. Last read position: chr1:40,309,938
INFO 2026-06-08 08:37:33 MarkDuplicates Tracking 25966 as yet unmatched pairs. 135 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:43,622,142
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 28057 as yet unmatched pairs. 24 records in RAM.
INFO 2026-06-08 08:37:36 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:46,131,847
INFO 2026-06-08 08:37:36 MarkDuplicates Tracking 30315 as yet unmatched pairs. 498 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 1s. Last read position: chr1:53,196,949
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 31839 as yet unmatched pairs. 107 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 1s. Last read position: chr1:61,990,310
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 34024 as yet unmatched pairs. 605 records in RAM.
INFO 2026-06-08 08:37:42 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:75,733,536
INFO 2026-06-08 08:37:42 MarkDuplicates Tracking 35770 as yet unmatched pairs. 613 records in RAM.
INFO 2026-06-08 08:37:44 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 2s. Last read position: chr1:88,949,226
INFO 2026-06-08 08:37:44 MarkDuplicates Tracking 37100 as yet unmatched pairs. 275 records in RAM.
INFO 2026-06-08 08:37:45 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:96,679,358
INFO 2026-06-08 08:37:45 MarkDuplicates Tracking 38785 as yet unmatched pairs. 277 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:35s. Time for last 1,000,000: 1s. Last read position: chr1:109,192,722
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 40469 as yet unmatched pairs. 303 records in RAM.
INFO 2026-06-08 08:37:48 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:37s. Time for last 1,000,000: 1s. Last read position: chr1:111,120,618
INFO 2026-06-08 08:37:48 MarkDuplicates Tracking 42516 as yet unmatched pairs. 448 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:114,425,540
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 44348 as yet unmatched pairs. 327 records in RAM.
INFO 2026-06-08 08:37:51 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:117,120,875
INFO 2026-06-08 08:37:51 MarkDuplicates Tracking 45735 as yet unmatched pairs. 48 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:41s. Time for last 1,000,000: 1s. Last read position: chr1:119,929,077
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 48887 as yet unmatched pairs. 1389 records in RAM.
INFO 2026-06-08 08:37:54 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:43s. Time for last 1,000,000: 1s. Last read position: chr1:120,724,145
INFO 2026-06-08 08:37:54 MarkDuplicates Tracking 49303 as yet unmatched pairs. 252 records in RAM.
INFO 2026-06-08 08:37:56 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:145,867,339
INFO 2026-06-08 08:37:56 MarkDuplicates Tracking 50389 as yet unmatched pairs. 442 records in RAM.
INFO 2026-06-08 08:37:58 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 2s. Last read position: chr1:146,960,147
INFO 2026-06-08 08:37:58 MarkDuplicates Tracking 51511 as yet unmatched pairs. 346 records in RAM.
INFO 2026-06-08 08:38:00 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:148,558,314
INFO 2026-06-08 08:38:00 MarkDuplicates Tracking 52877 as yet unmatched pairs. 766 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 1s. Last read position: chr1:149,476,006
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 53253 as yet unmatched pairs. 462 records in RAM.
INFO 2026-06-08 08:38:03 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:149,842,329
INFO 2026-06-08 08:38:03 MarkDuplicates Tracking 56899 as yet unmatched pairs. 2530 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:52s. Time for last 1,000,000: 1s. Last read position: chr1:149,852,976
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 55144 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:38:05 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 1s. Last read position: chr1:150,231,798
INFO 2026-06-08 08:38:05 MarkDuplicates Tracking 61486 as yet unmatched pairs. 4840 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:150,578,896
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 59263 as yet unmatched pairs. 829 records in RAM.
INFO 2026-06-08 08:38:09 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 2s. Last read position: chr1:151,055,682
INFO 2026-06-08 08:38:09 MarkDuplicates Tracking 61115 as yet unmatched pairs. 822 records in RAM.
INFO 2026-06-08 08:38:11 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:00:59s. Time for last 1,000,000: 1s. Last read position: chr1:151,428,350
INFO 2026-06-08 08:38:11 MarkDuplicates Tracking 62788 as yet unmatched pairs. 195 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:153,748,704
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 66031 as yet unmatched pairs. 1584 records in RAM.
INFO 2026-06-08 08:38:14 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:154,157,632
INFO 2026-06-08 08:38:14 MarkDuplicates Tracking 79681 as yet unmatched pairs. 13070 records in RAM.
INFO 2026-06-08 08:38:15 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 1s. Last read position: chr1:154,172,036
INFO 2026-06-08 08:38:15 MarkDuplicates Tracking 87759 as yet unmatched pairs. 20041 records in RAM.
INFO 2026-06-08 08:38:17 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:154,176,140
INFO 2026-06-08 08:38:17 MarkDuplicates Tracking 78846 as yet unmatched pairs. 9842 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr1:154,558,227
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 71612 as yet unmatched pairs. 539 records in RAM.
INFO 2026-06-08 08:38:20 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:154,990,354
INFO 2026-06-08 08:38:20 MarkDuplicates Tracking 73562 as yet unmatched pairs. 343 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:155,179,797
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 75889 as yet unmatched pairs. 134 records in RAM.
INFO 2026-06-08 08:38:24 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr1:155,320,439
INFO 2026-06-08 08:38:24 MarkDuplicates Tracking 78205 as yet unmatched pairs. 559 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:155,746,119
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 79688 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:38:27 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 1s. Last read position: chr1:156,115,254
INFO 2026-06-08 08:38:27 MarkDuplicates Tracking 89278 as yet unmatched pairs. 7773 records in RAM.
INFO 2026-06-08 08:38:29 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,163
INFO 2026-06-08 08:38:29 MarkDuplicates Tracking 88544 as yet unmatched pairs. 5148 records in RAM.
INFO 2026-06-08 08:38:30 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr1:156,317,521
INFO 2026-06-08 08:38:30 MarkDuplicates Tracking 89146 as yet unmatched pairs. 3594 records in RAM.
INFO 2026-06-08 08:38:32 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:156,671,898
INFO 2026-06-08 08:38:32 MarkDuplicates Tracking 88146 as yet unmatched pairs. 437 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:157,125,860
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 90027 as yet unmatched pairs. 104 records in RAM.
INFO 2026-06-08 08:38:35 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:160,218,332
INFO 2026-06-08 08:38:35 MarkDuplicates Tracking 92329 as yet unmatched pairs. 248 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr1:160,419,371
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 94604 as yet unmatched pairs. 680 records in RAM.
INFO 2026-06-08 08:38:39 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:161,198,290
INFO 2026-06-08 08:38:39 MarkDuplicates Tracking 96110 as yet unmatched pairs. 194 records in RAM.
INFO 2026-06-08 08:38:40 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr1:162,579,587
INFO 2026-06-08 08:38:40 MarkDuplicates Tracking 98341 as yet unmatched pairs. 451 records in RAM.
INFO 2026-06-08 08:38:42 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr1:167,697,609
INFO 2026-06-08 08:38:42 MarkDuplicates Tracking 99897 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:38:44 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr1:171,524,866
INFO 2026-06-08 08:38:44 MarkDuplicates Tracking 102945 as yet unmatched pairs. 1538 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:171,786,055
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 105103 as yet unmatched pairs. 1971 records in RAM.
INFO 2026-06-08 08:38:48 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr1:174,988,727
INFO 2026-06-08 08:38:48 MarkDuplicates Tracking 105423 as yet unmatched pairs. 526 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr1:179,335,584
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 123164 as yet unmatched pairs. 16609 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:182,386,279
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 108893 as yet unmatched pairs. 540 records in RAM.
INFO 2026-06-08 08:38:52 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:186,341,028
INFO 2026-06-08 08:38:52 MarkDuplicates Tracking 111541 as yet unmatched pairs. 1623 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:201,381,807
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 111649 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 08:38:55 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 1s. Last read position: chr1:203,305,555
INFO 2026-06-08 08:38:55 MarkDuplicates Tracking 113659 as yet unmatched pairs. 292 records in RAM.
INFO 2026-06-08 08:38:57 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr1:207,560,810
INFO 2026-06-08 08:38:57 MarkDuplicates Tracking 115307 as yet unmatched pairs. 6 records in RAM.
INFO 2026-06-08 08:38:58 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr1:220,102,194
INFO 2026-06-08 08:38:58 MarkDuplicates Tracking 117342 as yet unmatched pairs. 371 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 1s. Last read position: chr1:225,517,221
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 126002 as yet unmatched pairs. 7101 records in RAM.
INFO 2026-06-08 08:39:01 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr1:227,759,455
INFO 2026-06-08 08:39:01 MarkDuplicates Tracking 120783 as yet unmatched pairs. 202 records in RAM.
INFO 2026-06-08 08:39:03 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr1:229,636,728
INFO 2026-06-08 08:39:03 MarkDuplicates Tracking 122707 as yet unmatched pairs. 99 records in RAM.
INFO 2026-06-08 08:39:04 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr1:235,465,636
INFO 2026-06-08 08:39:04 MarkDuplicates Tracking 124956 as yet unmatched pairs. 241 records in RAM.
INFO 2026-06-08 08:39:06 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr1:244,054,198
INFO 2026-06-08 08:39:06 MarkDuplicates Tracking 126968 as yet unmatched pairs. 451 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr1:246,850,688
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 128268 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr2:10,124,722
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 131328 as yet unmatched pairs. 131084 records in RAM.
INFO 2026-06-08 08:39:12 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:23,823,526
INFO 2026-06-08 08:39:12 MarkDuplicates Tracking 131975 as yet unmatched pairs. 131731 records in RAM.
INFO 2026-06-08 08:39:15 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr2:27,134,330
INFO 2026-06-08 08:39:15 MarkDuplicates Tracking 134726 as yet unmatched pairs. 134478 records in RAM.
INFO 2026-06-08 08:39:16 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr2:28,752,150
INFO 2026-06-08 08:39:16 MarkDuplicates Tracking 145782 as yet unmatched pairs. 145534 records in RAM.
INFO 2026-06-08 08:39:18 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,255
INFO 2026-06-08 08:39:18 MarkDuplicates Tracking 162370 as yet unmatched pairs. 134152 records in RAM.
INFO 2026-06-08 08:39:20 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:39:20 MarkDuplicates Tracking 629064 as yet unmatched pairs. 82406 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 841958 as yet unmatched pairs. 58336 records in RAM.
INFO 2026-06-08 08:39:22 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr2:37,041,215
INFO 2026-06-08 08:39:22 MarkDuplicates Tracking 890079 as yet unmatched pairs. 51958 records in RAM.
INFO 2026-06-08 08:39:24 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr2:43,224,567
INFO 2026-06-08 08:39:24 MarkDuplicates Tracking 888222 as yet unmatched pairs. 50101 records in RAM.
INFO 2026-06-08 08:39:25 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr2:47,160,742
INFO 2026-06-08 08:39:25 MarkDuplicates Tracking 892387 as yet unmatched pairs. 54266 records in RAM.
INFO 2026-06-08 08:39:27 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:54,631,263
INFO 2026-06-08 08:39:27 MarkDuplicates Tracking 884692 as yet unmatched pairs. 46571 records in RAM.
INFO 2026-06-08 08:39:28 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:58,084,111
INFO 2026-06-08 08:39:28 MarkDuplicates Tracking 882947 as yet unmatched pairs. 44825 records in RAM.
INFO 2026-06-08 08:39:30 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr2:65,088,578
INFO 2026-06-08 08:39:30 MarkDuplicates Tracking 881804 as yet unmatched pairs. 43665 records in RAM.
INFO 2026-06-08 08:39:32 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr2:70,963,193
INFO 2026-06-08 08:39:32 MarkDuplicates Tracking 879476 as yet unmatched pairs. 41337 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr2:74,368,031
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 878315 as yet unmatched pairs. 40171 records in RAM.
INFO 2026-06-08 08:39:35 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr2:85,326,919
INFO 2026-06-08 08:39:35 MarkDuplicates Tracking 876106 as yet unmatched pairs. 37958 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 1s. Last read position: chr2:86,977,613
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 873531 as yet unmatched pairs. 35383 records in RAM.
INFO 2026-06-08 08:39:38 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:96,195,427
INFO 2026-06-08 08:39:38 MarkDuplicates Tracking 872574 as yet unmatched pairs. 34419 records in RAM.
INFO 2026-06-08 08:39:40 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 1s. Last read position: chr2:98,554,489
INFO 2026-06-08 08:39:40 MarkDuplicates Tracking 870810 as yet unmatched pairs. 32648 records in RAM.
INFO 2026-06-08 08:39:41 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr2:106,435,088
INFO 2026-06-08 08:39:41 MarkDuplicates Tracking 868823 as yet unmatched pairs. 30660 records in RAM.
INFO 2026-06-08 08:39:43 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:108,786,884
INFO 2026-06-08 08:39:43 MarkDuplicates Tracking 867993 as yet unmatched pairs. 29830 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 1s. Last read position: chr2:112,660,558
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 866964 as yet unmatched pairs. 28785 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr2:127,286,904
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 865401 as yet unmatched pairs. 27220 records in RAM.
INFO 2026-06-08 08:39:47 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 1s. Last read position: chr2:135,852,794
INFO 2026-06-08 08:39:47 MarkDuplicates Tracking 863416 as yet unmatched pairs. 25221 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:37s. Time for last 1,000,000: 1s. Last read position: chr2:161,340,871
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 861783 as yet unmatched pairs. 23588 records in RAM.
INFO 2026-06-08 08:39:51 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr2:174,720,375
INFO 2026-06-08 08:39:51 MarkDuplicates Tracking 861102 as yet unmatched pairs. 22895 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr2:188,992,925
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 860464 as yet unmatched pairs. 22257 records in RAM.
INFO 2026-06-08 08:39:54 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 1s. Last read position: chr2:191,393,149
INFO 2026-06-08 08:39:54 MarkDuplicates Tracking 856796 as yet unmatched pairs. 18584 records in RAM.
INFO 2026-06-08 08:39:56 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:202,265,964
INFO 2026-06-08 08:39:56 MarkDuplicates Tracking 855949 as yet unmatched pairs. 17736 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 1s. Last read position: chr2:215,367,983
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 854014 as yet unmatched pairs. 15791 records in RAM.
INFO 2026-06-08 08:39:59 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:215,419,241
INFO 2026-06-08 08:39:59 MarkDuplicates Tracking 854510 as yet unmatched pairs. 16286 records in RAM.
INFO 2026-06-08 08:40:01 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr2:218,344,482
INFO 2026-06-08 08:40:01 MarkDuplicates Tracking 849655 as yet unmatched pairs. 11429 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 1s. Last read position: chr2:219,556,167
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 847766 as yet unmatched pairs. 9538 records in RAM.
INFO 2026-06-08 08:40:04 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr2:229,829,264
INFO 2026-06-08 08:40:04 MarkDuplicates Tracking 845730 as yet unmatched pairs. 7497 records in RAM.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 1s. Last read position: chr2:231,711,950
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 849516 as yet unmatched pairs. 11282 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr2:237,351,137
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 841541 as yet unmatched pairs. 3305 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr2:241,235,124
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 840744 as yet unmatched pairs. 2507 records in RAM.
INFO 2026-06-08 08:40:11 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr3:8,548,768
INFO 2026-06-08 08:40:11 MarkDuplicates Tracking 837526 as yet unmatched pairs. 56142 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr3:9,918,397
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 837909 as yet unmatched pairs. 56520 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr3:11,559,320
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 833616 as yet unmatched pairs. 52221 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 1s. Last read position: chr3:13,343,241
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 831553 as yet unmatched pairs. 50156 records in RAM.
INFO 2026-06-08 08:40:17 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr3:15,738,576
INFO 2026-06-08 08:40:17 MarkDuplicates Tracking 829244 as yet unmatched pairs. 47843 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 1s. Last read position: chr3:30,674,107
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 827705 as yet unmatched pairs. 46290 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr3:36,993,604
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 825953 as yet unmatched pairs. 44523 records in RAM.
INFO 2026-06-08 08:40:22 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 1s. Last read position: chr3:39,391,822
INFO 2026-06-08 08:40:22 MarkDuplicates Tracking 824299 as yet unmatched pairs. 42864 records in RAM.
INFO 2026-06-08 08:40:24 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr3:42,658,947
INFO 2026-06-08 08:40:24 MarkDuplicates Tracking 822217 as yet unmatched pairs. 40782 records in RAM.
INFO 2026-06-08 08:40:25 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr3:47,426,268
INFO 2026-06-08 08:40:25 MarkDuplicates Tracking 820219 as yet unmatched pairs. 38779 records in RAM.
INFO 2026-06-08 08:40:27 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr3:48,660,699
INFO 2026-06-08 08:40:27 MarkDuplicates Tracking 818268 as yet unmatched pairs. 36827 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr3:49,278,296
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 816198 as yet unmatched pairs. 34757 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr3:50,236,440
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 817031 as yet unmatched pairs. 35589 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr3:52,374,617
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 812127 as yet unmatched pairs. 30684 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr3:57,120,270
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 809872 as yet unmatched pairs. 28428 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr3:63,838,451
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 808944 as yet unmatched pairs. 27494 records in RAM.
INFO 2026-06-08 08:40:37 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 1s. Last read position: chr3:73,064,887
INFO 2026-06-08 08:40:37 MarkDuplicates Tracking 806649 as yet unmatched pairs. 25194 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 1s. Last read position: chr3:101,664,589
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 804437 as yet unmatched pairs. 22971 records in RAM.
INFO 2026-06-08 08:40:40 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:120,399,882
INFO 2026-06-08 08:40:40 MarkDuplicates Tracking 803154 as yet unmatched pairs. 21682 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:125,460,787
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 801214 as yet unmatched pairs. 19741 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:128,795,390
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 799981 as yet unmatched pairs. 18508 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 1s. Last read position: chr3:129,519,165
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 805445 as yet unmatched pairs. 23971 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:133,947,418
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 795210 as yet unmatched pairs. 13733 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:143,021,476
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 793777 as yet unmatched pairs. 12300 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 1s. Last read position: chr3:155,919,214
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 791915 as yet unmatched pairs. 10438 records in RAM.
INFO 2026-06-08 08:40:51 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:172,514,888
INFO 2026-06-08 08:40:51 MarkDuplicates Tracking 789778 as yet unmatched pairs. 8299 records in RAM.
INFO 2026-06-08 08:40:53 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 1s. Last read position: chr3:184,166,443
INFO 2026-06-08 08:40:53 MarkDuplicates Tracking 789379 as yet unmatched pairs. 7879 records in RAM.
INFO 2026-06-08 08:40:55 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 1s. Last read position: chr3:184,580,421
INFO 2026-06-08 08:40:55 MarkDuplicates Tracking 786207 as yet unmatched pairs. 4694 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:195,302,021
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 784529 as yet unmatched pairs. 3015 records in RAM.
INFO 2026-06-08 08:40:57 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:197,115,943
INFO 2026-06-08 08:40:57 MarkDuplicates Tracking 782341 as yet unmatched pairs. 824 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr4:1,730,876
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 782327 as yet unmatched pairs. 24146 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 1s. Last read position: chr4:2,938,874
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 778521 as yet unmatched pairs. 20340 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:03:51s. Time for last 1,000,000: 1s. Last read position: chr4:8,601,404
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 776126 as yet unmatched pairs. 17945 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr4:38,049,755
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 774431 as yet unmatched pairs. 16242 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr4:51,863,439
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 773570 as yet unmatched pairs. 15371 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr4:68,318,542
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 771234 as yet unmatched pairs. 13031 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr4:77,048,572
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 769848 as yet unmatched pairs. 11643 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr4:86,686,761
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 767504 as yet unmatched pairs. 9295 records in RAM.
INFO 2026-06-08 08:41:13 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 2s. Last read position: chr4:102,809,838
INFO 2026-06-08 08:41:13 MarkDuplicates Tracking 766467 as yet unmatched pairs. 8256 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr4:121,681,736
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 765483 as yet unmatched pairs. 7268 records in RAM.
INFO 2026-06-08 08:41:17 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr4:140,645,109
INFO 2026-06-08 08:41:17 MarkDuplicates Tracking 762087 as yet unmatched pairs. 3872 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr4:159,314,632
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 760159 as yet unmatched pairs. 1939 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr4:186,620,300
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 758515 as yet unmatched pairs. 285 records in RAM.
INFO 2026-06-08 08:41:23 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 2s. Last read position: chr5:10,250,329
INFO 2026-06-08 08:41:23 MarkDuplicates Tracking 760390 as yet unmatched pairs. 42278 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr5:14,280,366
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 764743 as yet unmatched pairs. 46619 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr5:14,504,471
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 754091 as yet unmatched pairs. 35948 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr5:33,453,294
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 751834 as yet unmatched pairs. 33690 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr5:38,883,854
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 749833 as yet unmatched pairs. 31677 records in RAM.
INFO 2026-06-08 08:41:31 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr5:43,649,164
INFO 2026-06-08 08:41:31 MarkDuplicates Tracking 748137 as yet unmatched pairs. 29977 records in RAM.
INFO 2026-06-08 08:41:33 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr5:68,295,146
INFO 2026-06-08 08:41:33 MarkDuplicates Tracking 746298 as yet unmatched pairs. 28137 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr5:75,345,629
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 745321 as yet unmatched pairs. 27158 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr5:83,490,138
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 743235 as yet unmatched pairs. 25072 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr5:103,194,913
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 741536 as yet unmatched pairs. 23368 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr5:127,512,597
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 739757 as yet unmatched pairs. 21572 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr5:135,031,290
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 739844 as yet unmatched pairs. 21653 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr5:139,319,399
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 736763 as yet unmatched pairs. 18572 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr5:141,102,870
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 734319 as yet unmatched pairs. 16122 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr5:141,863,743
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 732747 as yet unmatched pairs. 14550 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr5:150,126,586
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 735773 as yet unmatched pairs. 17574 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr5:150,444,343
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 730592 as yet unmatched pairs. 12393 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr5:154,863,373
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 727602 as yet unmatched pairs. 9402 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 2s. Last read position: chr5:171,391,371
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 737552 as yet unmatched pairs. 19350 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr5:172,339,473
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 724146 as yet unmatched pairs. 5944 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr5:177,538,056
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 722305 as yet unmatched pairs. 4102 records in RAM.
INFO 2026-06-08 08:41:59 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:179,724,758
INFO 2026-06-08 08:41:59 MarkDuplicates Tracking 725678 as yet unmatched pairs. 7474 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr5:181,238,138
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 719332 as yet unmatched pairs. 1126 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 2s. Last read position: chr6:7,181,976
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 718307 as yet unmatched pairs. 51375 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr6:7,889,505
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 715339 as yet unmatched pairs. 48407 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr6:17,817,037
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 713134 as yet unmatched pairs. 46190 records in RAM.
INFO 2026-06-08 08:42:08 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr6:26,158,164
INFO 2026-06-08 08:42:08 MarkDuplicates Tracking 711785 as yet unmatched pairs. 44837 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr6:27,808,509
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 709509 as yet unmatched pairs. 42561 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:04:59s. Time for last 1,000,000: 1s. Last read position: chr6:29,944,324
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 715459 as yet unmatched pairs. 48511 records in RAM.
INFO 2026-06-08 08:42:12 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr6:30,723,350
INFO 2026-06-08 08:42:12 MarkDuplicates Tracking 706785 as yet unmatched pairs. 39835 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 1s. Last read position: chr6:31,632,762
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 705733 as yet unmatched pairs. 38783 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr6:31,816,632
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 702315 as yet unmatched pairs. 35364 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr6:31,888,985
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 701023 as yet unmatched pairs. 34065 records in RAM.
INFO 2026-06-08 08:42:18 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr6:32,832,719
INFO 2026-06-08 08:42:18 MarkDuplicates Tracking 698845 as yet unmatched pairs. 31885 records in RAM.
INFO 2026-06-08 08:42:20 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr6:33,315,764
INFO 2026-06-08 08:42:20 MarkDuplicates Tracking 696887 as yet unmatched pairs. 29926 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr6:34,654,624
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 694834 as yet unmatched pairs. 27869 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr6:36,970,679
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 695086 as yet unmatched pairs. 28121 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr6:42,879,888
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 690326 as yet unmatched pairs. 23361 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr6:43,525,874
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 688819 as yet unmatched pairs. 21854 records in RAM.
INFO 2026-06-08 08:42:29 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr6:44,249,401
INFO 2026-06-08 08:42:29 MarkDuplicates Tracking 686839 as yet unmatched pairs. 19873 records in RAM.
INFO 2026-06-08 08:42:31 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr6:53,269,100
INFO 2026-06-08 08:42:31 MarkDuplicates Tracking 684279 as yet unmatched pairs. 17312 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr6:75,240,302
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 686079 as yet unmatched pairs. 19112 records in RAM.
INFO 2026-06-08 08:42:33 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr6:87,155,623
INFO 2026-06-08 08:42:33 MarkDuplicates Tracking 682101 as yet unmatched pairs. 15134 records in RAM.
INFO 2026-06-08 08:42:35 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 1s. Last read position: chr6:99,543,496
INFO 2026-06-08 08:42:35 MarkDuplicates Tracking 679324 as yet unmatched pairs. 12356 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr6:111,374,067
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 677407 as yet unmatched pairs. 10430 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr6:122,458,642
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 675539 as yet unmatched pairs. 8561 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 1s. Last read position: chr6:138,473,344
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 673691 as yet unmatched pairs. 6709 records in RAM.
INFO 2026-06-08 08:42:41 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:152,249,231
INFO 2026-06-08 08:42:41 MarkDuplicates Tracking 671839 as yet unmatched pairs. 4856 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 1s. Last read position: chr6:158,787,185
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 675624 as yet unmatched pairs. 8639 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 2s. Last read position: chr6:164,387,258
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 668478 as yet unmatched pairs. 1492 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:35s. Time for last 1,000,000: 2s. Last read position: chr7:1,477,829
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 666827 as yet unmatched pairs. 48278 records in RAM.
INFO 2026-06-08 08:42:48 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr7:5,377,540
INFO 2026-06-08 08:42:48 MarkDuplicates Tracking 664829 as yet unmatched pairs. 46278 records in RAM.
INFO 2026-06-08 08:42:50 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr7:6,463,088
INFO 2026-06-08 08:42:50 MarkDuplicates Tracking 663248 as yet unmatched pairs. 44686 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 2s. Last read position: chr7:26,197,005
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 668490 as yet unmatched pairs. 49928 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 1s. Last read position: chr7:42,917,803
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 659797 as yet unmatched pairs. 41226 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr7:45,252,006
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 656743 as yet unmatched pairs. 38171 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr7:56,079,616
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 655419 as yet unmatched pairs. 36844 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:47s. Time for last 1,000,000: 1s. Last read position: chr7:72,999,306
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 653343 as yet unmatched pairs. 34746 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr7:74,056,303
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 652714 as yet unmatched pairs. 34117 records in RAM.
INFO 2026-06-08 08:43:01 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr7:75,207,979
INFO 2026-06-08 08:43:01 MarkDuplicates Tracking 650969 as yet unmatched pairs. 32369 records in RAM.
INFO 2026-06-08 08:43:03 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr7:76,536,448
INFO 2026-06-08 08:43:03 MarkDuplicates Tracking 648151 as yet unmatched pairs. 29551 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr7:92,040,823
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 646690 as yet unmatched pairs. 28084 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr7:94,420,603
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 646626 as yet unmatched pairs. 28008 records in RAM.
INFO 2026-06-08 08:43:07 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 1s. Last read position: chr7:99,008,477
INFO 2026-06-08 08:43:07 MarkDuplicates Tracking 643079 as yet unmatched pairs. 24461 records in RAM.
INFO 2026-06-08 08:43:09 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr7:100,089,404
INFO 2026-06-08 08:43:09 MarkDuplicates Tracking 641278 as yet unmatched pairs. 22660 records in RAM.
INFO 2026-06-08 08:43:10 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr7:100,805,663
INFO 2026-06-08 08:43:10 MarkDuplicates Tracking 639630 as yet unmatched pairs. 21012 records in RAM.
INFO 2026-06-08 08:43:12 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr7:102,538,334
INFO 2026-06-08 08:43:12 MarkDuplicates Tracking 637529 as yet unmatched pairs. 18891 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr7:105,301,716
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 637116 as yet unmatched pairs. 18454 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr7:116,251,925
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 634980 as yet unmatched pairs. 16318 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr7:127,807,560
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 639021 as yet unmatched pairs. 20354 records in RAM.
INFO 2026-06-08 08:43:17 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 1s. Last read position: chr7:128,986,894
INFO 2026-06-08 08:43:17 MarkDuplicates Tracking 632443 as yet unmatched pairs. 13776 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 2s. Last read position: chr7:135,607,256
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 629849 as yet unmatched pairs. 11182 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr7:140,057,923
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 627957 as yet unmatched pairs. 9288 records in RAM.
INFO 2026-06-08 08:43:23 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr7:143,858,844
INFO 2026-06-08 08:43:23 MarkDuplicates Tracking 626702 as yet unmatched pairs. 8033 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr7:149,224,087
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 625435 as yet unmatched pairs. 6766 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr7:151,224,924
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 622644 as yet unmatched pairs. 3975 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr7:155,680,897
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 620891 as yet unmatched pairs. 2220 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 1s. Last read position: chr7:158,788,078
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 619473 as yet unmatched pairs. 802 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr8:11,846,528
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 618255 as yet unmatched pairs. 37876 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:21s. Time for last 1,000,000: 1s. Last read position: chr8:22,098,543
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 615749 as yet unmatched pairs. 35364 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr8:23,256,520
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 613997 as yet unmatched pairs. 33611 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:23s. Time for last 1,000,000: 1s. Last read position: chr8:29,337,139
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 612055 as yet unmatched pairs. 31668 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr8:38,347,830
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 610196 as yet unmatched pairs. 29805 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr8:41,934,294
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 608222 as yet unmatched pairs. 27831 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr8:47,864,685
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 607153 as yet unmatched pairs. 26756 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,746
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 608910 as yet unmatched pairs. 28513 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr8:65,605,513
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 602727 as yet unmatched pairs. 22329 records in RAM.
INFO 2026-06-08 08:43:44 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr8:73,292,697
INFO 2026-06-08 08:43:44 MarkDuplicates Tracking 601157 as yet unmatched pairs. 20758 records in RAM.
INFO 2026-06-08 08:43:46 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 1s. Last read position: chr8:88,167,751
INFO 2026-06-08 08:43:46 MarkDuplicates Tracking 599480 as yet unmatched pairs. 19066 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 1s. Last read position: chr8:97,691,156
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 600097 as yet unmatched pairs. 19683 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 2s. Last read position: chr8:100,704,974
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 596989 as yet unmatched pairs. 16575 records in RAM.
INFO 2026-06-08 08:43:51 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr8:102,257,676
INFO 2026-06-08 08:43:51 MarkDuplicates Tracking 594998 as yet unmatched pairs. 14583 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 1s. Last read position: chr8:108,455,872
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 593781 as yet unmatched pairs. 13356 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr8:120,453,827
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 591447 as yet unmatched pairs. 11022 records in RAM.
INFO 2026-06-08 08:43:57 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,747
INFO 2026-06-08 08:43:57 MarkDuplicates Tracking 590019 as yet unmatched pairs. 9593 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:06:47s. Time for last 1,000,000: 1s. Last read position: chr8:143,021,313
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 592987 as yet unmatched pairs. 12477 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:06:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,859,859
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 586071 as yet unmatched pairs. 5560 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,868,217
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 585598 as yet unmatched pairs. 5087 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr8:144,248,914
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 582744 as yet unmatched pairs. 2231 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr9:17,155
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 580521 as yet unmatched pairs. 41211 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr9:6,007,262
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 579132 as yet unmatched pairs. 39821 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr9:14,307,100
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 585395 as yet unmatched pairs. 46082 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr9:21,968,208
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 582434 as yet unmatched pairs. 43118 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr9:33,264,338
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 572677 as yet unmatched pairs. 33351 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr9:35,091,559
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 570958 as yet unmatched pairs. 31628 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 1s. Last read position: chr9:36,197,575
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 569008 as yet unmatched pairs. 29677 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:04s. Time for last 1,000,000: 1s. Last read position: chr9:65,733,492
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 566975 as yet unmatched pairs. 27642 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 62s. Last read position: chr9:81,590,824
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 566356 as yet unmatched pairs. 27021 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr9:89,349,656
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 563778 as yet unmatched pairs. 24443 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr9:95,461,870
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 561807 as yet unmatched pairs. 22470 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 1s. Last read position: chr9:104,383,665
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 560003 as yet unmatched pairs. 20666 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 1s. Last read position: chr9:113,408,867
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 558339 as yet unmatched pairs. 19002 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 1s. Last read position: chr9:122,957,010
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 557198 as yet unmatched pairs. 17860 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:08:16s. Time for last 1,000,000: 1s. Last read position: chr9:127,447,971
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 555033 as yet unmatched pairs. 15690 records in RAM.
INFO 2026-06-08 08:45:29 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:08:18s. Time for last 1,000,000: 1s. Last read position: chr9:128,484,794
INFO 2026-06-08 08:45:29 MarkDuplicates Tracking 553164 as yet unmatched pairs. 13821 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 1s. Last read position: chr9:129,111,458
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 551138 as yet unmatched pairs. 11793 records in RAM.
INFO 2026-06-08 08:45:32 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:08:21s. Time for last 1,000,000: 1s. Last read position: chr9:131,446,498
INFO 2026-06-08 08:45:32 MarkDuplicates Tracking 548657 as yet unmatched pairs. 9299 records in RAM.
INFO 2026-06-08 08:45:34 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 1s. Last read position: chr9:133,348,954
INFO 2026-06-08 08:45:34 MarkDuplicates Tracking 546838 as yet unmatched pairs. 7473 records in RAM.
INFO 2026-06-08 08:45:36 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 1s. Last read position: chr9:135,821,443
INFO 2026-06-08 08:45:36 MarkDuplicates Tracking 544675 as yet unmatched pairs. 5310 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 1s. Last read position: chr9:136,858,345
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 542406 as yet unmatched pairs. 3037 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 2s. Last read position: chr9:137,522,787
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 540034 as yet unmatched pairs. 665 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 2s. Last read position: chr10:1,103,664
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 538600 as yet unmatched pairs. 42326 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 1s. Last read position: chr10:5,785,868
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 539923 as yet unmatched pairs. 43649 records in RAM.
INFO 2026-06-08 08:45:45 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 1s. Last read position: chr10:11,979,088
INFO 2026-06-08 08:45:45 MarkDuplicates Tracking 534756 as yet unmatched pairs. 38479 records in RAM.
INFO 2026-06-08 08:45:47 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:35s. Time for last 1,000,000: 1s. Last read position: chr10:14,838,328
INFO 2026-06-08 08:45:47 MarkDuplicates Tracking 532941 as yet unmatched pairs. 36657 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 1s. Last read position: chr10:21,673,880
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 530926 as yet unmatched pairs. 34641 records in RAM.
INFO 2026-06-08 08:45:50 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 1s. Last read position: chr10:27,114,572
INFO 2026-06-08 08:45:50 MarkDuplicates Tracking 534218 as yet unmatched pairs. 37932 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:40s. Time for last 1,000,000: 1s. Last read position: chr10:29,480,594
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 527514 as yet unmatched pairs. 31227 records in RAM.
INFO 2026-06-08 08:45:53 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 1s. Last read position: chr10:32,028,482
INFO 2026-06-08 08:45:53 MarkDuplicates Tracking 527085 as yet unmatched pairs. 30796 records in RAM.
INFO 2026-06-08 08:45:55 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 1s. Last read position: chr10:32,922,284
INFO 2026-06-08 08:45:55 MarkDuplicates Tracking 525872 as yet unmatched pairs. 29583 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 1s. Last read position: chr10:43,155,572
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 522477 as yet unmatched pairs. 26175 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr10:46,130,756
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 520744 as yet unmatched pairs. 24442 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:08:47s. Time for last 1,000,000: 1s. Last read position: chr10:50,125,128
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 519766 as yet unmatched pairs. 23464 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr10:63,207,036
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 518138 as yet unmatched pairs. 21836 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr10:69,925,850
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 516087 as yet unmatched pairs. 19768 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr10:73,011,012
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 514092 as yet unmatched pairs. 17771 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 1s. Last read position: chr10:73,792,329
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 519664 as yet unmatched pairs. 23341 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr10:75,399,839
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 510131 as yet unmatched pairs. 13808 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr10:79,297,656
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 508647 as yet unmatched pairs. 12324 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 2s. Last read position: chr10:87,505,330
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 507150 as yet unmatched pairs. 10825 records in RAM.
INFO 2026-06-08 08:46:13 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 1s. Last read position: chr10:93,600,751
INFO 2026-06-08 08:46:13 MarkDuplicates Tracking 537015 as yet unmatched pairs. 40689 records in RAM.
INFO 2026-06-08 08:46:15 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr10:99,406,690
INFO 2026-06-08 08:46:15 MarkDuplicates Tracking 503514 as yet unmatched pairs. 7177 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr10:102,398,368
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 501758 as yet unmatched pairs. 5421 records in RAM.
INFO 2026-06-08 08:46:18 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 1s. Last read position: chr10:113,040,053
INFO 2026-06-08 08:46:18 MarkDuplicates Tracking 499628 as yet unmatched pairs. 3291 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr10:123,155,053
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 497936 as yet unmatched pairs. 1598 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 2s. Last read position: chr11:233,357
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 496445 as yet unmatched pairs. 64897 records in RAM.
INFO 2026-06-08 08:46:23 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr11:640,538
INFO 2026-06-08 08:46:23 MarkDuplicates Tracking 493673 as yet unmatched pairs. 62124 records in RAM.
INFO 2026-06-08 08:46:25 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 1s. Last read position: chr11:1,233,164
INFO 2026-06-08 08:46:25 MarkDuplicates Tracking 491168 as yet unmatched pairs. 59609 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr11:2,132,926
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 491234 as yet unmatched pairs. 59640 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 1s. Last read position: chr11:2,133,614
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 525493 as yet unmatched pairs. 93898 records in RAM.
INFO 2026-06-08 08:46:29 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 1s. Last read position: chr11:2,402,995
INFO 2026-06-08 08:46:29 MarkDuplicates Tracking 485589 as yet unmatched pairs. 53991 records in RAM.
INFO 2026-06-08 08:46:31 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr11:6,479,221
INFO 2026-06-08 08:46:31 MarkDuplicates Tracking 483658 as yet unmatched pairs. 52040 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr11:9,785,203
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 481550 as yet unmatched pairs. 49932 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr11:16,738,750
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 483515 as yet unmatched pairs. 51893 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr11:27,357,514
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 478021 as yet unmatched pairs. 46399 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 1s. Last read position: chr11:34,071,772
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 476888 as yet unmatched pairs. 45266 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr11:44,232,382
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 474877 as yet unmatched pairs. 43255 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr11:46,383,496
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 475036 as yet unmatched pairs. 43413 records in RAM.
INFO 2026-06-08 08:46:43 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr11:47,425,867
INFO 2026-06-08 08:46:43 MarkDuplicates Tracking 470129 as yet unmatched pairs. 38506 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr11:57,332,694
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 468711 as yet unmatched pairs. 37087 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:09:34s. Time for last 1,000,000: 1s. Last read position: chr11:59,806,761
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 466290 as yet unmatched pairs. 34666 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr11:61,812,509
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 464463 as yet unmatched pairs. 32838 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr11:62,559,720
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 463042 as yet unmatched pairs. 31416 records in RAM.
INFO 2026-06-08 08:46:50 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr11:62,765,206
INFO 2026-06-08 08:46:50 MarkDuplicates Tracking 461094 as yet unmatched pairs. 29467 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr11:64,244,709
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 459948 as yet unmatched pairs. 28321 records in RAM.
INFO 2026-06-08 08:46:53 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 1s. Last read position: chr11:65,108,408
INFO 2026-06-08 08:46:53 MarkDuplicates Tracking 456325 as yet unmatched pairs. 24693 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr11:65,618,765
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 453740 as yet unmatched pairs. 22104 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr11:66,265,208
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 451581 as yet unmatched pairs. 19945 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr11:66,848,936
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 449585 as yet unmatched pairs. 17949 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr11:68,175,163
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 447533 as yet unmatched pairs. 15896 records in RAM.
INFO 2026-06-08 08:47:01 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:09:49s. Time for last 1,000,000: 1s. Last read position: chr11:72,009,079
INFO 2026-06-08 08:47:01 MarkDuplicates Tracking 445196 as yet unmatched pairs. 13557 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 2s. Last read position: chr11:74,949,340
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 443909 as yet unmatched pairs. 12270 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 1s. Last read position: chr11:78,672,060
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 441172 as yet unmatched pairs. 9523 records in RAM.
INFO 2026-06-08 08:47:07 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr11:101,062,544
INFO 2026-06-08 08:47:07 MarkDuplicates Tracking 439358 as yet unmatched pairs. 7701 records in RAM.
INFO 2026-06-08 08:47:09 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 2s. Last read position: chr11:112,086,941
INFO 2026-06-08 08:47:09 MarkDuplicates Tracking 438585 as yet unmatched pairs. 6928 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 1s. Last read position: chr11:118,898,942
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 435778 as yet unmatched pairs. 4119 records in RAM.
INFO 2026-06-08 08:47:12 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr11:123,060,788
INFO 2026-06-08 08:47:12 MarkDuplicates Tracking 434845 as yet unmatched pairs. 3186 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr11:132,942,978
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 431822 as yet unmatched pairs. 161 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:04s. Time for last 1,000,000: 1s. Last read position: chr12:6,026,032
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 431059 as yet unmatched pairs. 42531 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr12:6,769,603
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 428316 as yet unmatched pairs. 39788 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr12:8,059,423
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 426104 as yet unmatched pairs. 37576 records in RAM.
INFO 2026-06-08 08:47:20 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr12:14,774,591
INFO 2026-06-08 08:47:20 MarkDuplicates Tracking 424624 as yet unmatched pairs. 36089 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr12:31,102,260
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 423062 as yet unmatched pairs. 34526 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr12:48,133,366
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 421150 as yet unmatched pairs. 32614 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr12:49,185,554
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 419270 as yet unmatched pairs. 30734 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr12:51,124,753
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 417910 as yet unmatched pairs. 29373 records in RAM.
INFO 2026-06-08 08:47:27 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr12:53,305,964
INFO 2026-06-08 08:47:27 MarkDuplicates Tracking 415962 as yet unmatched pairs. 27424 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr12:54,282,812
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 416523 as yet unmatched pairs. 27985 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr12:56,098,514
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 412237 as yet unmatched pairs. 23697 records in RAM.
INFO 2026-06-08 08:47:32 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr12:56,343,929
INFO 2026-06-08 08:47:32 MarkDuplicates Tracking 410837 as yet unmatched pairs. 22297 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,097,112
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 408608 as yet unmatched pairs. 20068 records in RAM.
INFO 2026-06-08 08:47:36 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr12:57,716,170
INFO 2026-06-08 08:47:36 MarkDuplicates Tracking 407482 as yet unmatched pairs. 18941 records in RAM.
INFO 2026-06-08 08:47:38 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 2s. Last read position: chr12:68,687,037
INFO 2026-06-08 08:47:38 MarkDuplicates Tracking 405016 as yet unmatched pairs. 16475 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr12:91,104,283
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 403332 as yet unmatched pairs. 14791 records in RAM.
INFO 2026-06-08 08:47:42 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr12:101,920,157
INFO 2026-06-08 08:47:42 MarkDuplicates Tracking 401365 as yet unmatched pairs. 12821 records in RAM.
INFO 2026-06-08 08:47:43 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr12:108,652,279
INFO 2026-06-08 08:47:43 MarkDuplicates Tracking 399898 as yet unmatched pairs. 11352 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,377
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 398516 as yet unmatched pairs. 9970 records in RAM.
INFO 2026-06-08 08:47:46 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr12:118,082,406
INFO 2026-06-08 08:47:46 MarkDuplicates Tracking 395929 as yet unmatched pairs. 7381 records in RAM.
INFO 2026-06-08 08:47:47 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr12:121,004,257
INFO 2026-06-08 08:47:47 MarkDuplicates Tracking 393981 as yet unmatched pairs. 5430 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr12:123,309,344
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 392016 as yet unmatched pairs. 3464 records in RAM.
INFO 2026-06-08 08:47:50 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr12:131,961,798
INFO 2026-06-08 08:47:50 MarkDuplicates Tracking 390552 as yet unmatched pairs. 1997 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr13:19,993,161
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 390468 as yet unmatched pairs. 13588 records in RAM.
INFO 2026-06-08 08:47:54 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr13:30,657,586
INFO 2026-06-08 08:47:54 MarkDuplicates Tracking 386817 as yet unmatched pairs. 9936 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr13:45,486,434
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 385153 as yet unmatched pairs. 8264 records in RAM.
INFO 2026-06-08 08:47:56 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr13:77,077,325
INFO 2026-06-08 08:47:56 MarkDuplicates Tracking 383653 as yet unmatched pairs. 6759 records in RAM.
INFO 2026-06-08 08:47:58 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr13:98,880,547
INFO 2026-06-08 08:47:58 MarkDuplicates Tracking 381809 as yet unmatched pairs. 4912 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr13:110,205,359
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 380084 as yet unmatched pairs. 3185 records in RAM.
INFO 2026-06-08 08:48:01 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr13:113,321,706
INFO 2026-06-08 08:48:01 MarkDuplicates Tracking 383282 as yet unmatched pairs. 6376 records in RAM.
INFO 2026-06-08 08:48:03 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr14:21,231,041
INFO 2026-06-08 08:48:03 MarkDuplicates Tracking 381033 as yet unmatched pairs. 32177 records in RAM.
INFO 2026-06-08 08:48:05 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr14:23,276,186
INFO 2026-06-08 08:48:05 MarkDuplicates Tracking 373897 as yet unmatched pairs. 25041 records in RAM.
INFO 2026-06-08 08:48:06 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr14:24,337,450
INFO 2026-06-08 08:48:06 MarkDuplicates Tracking 371880 as yet unmatched pairs. 23024 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr14:39,180,810
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 371141 as yet unmatched pairs. 22282 records in RAM.
INFO 2026-06-08 08:48:10 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 2s. Last read position: chr14:54,995,729
INFO 2026-06-08 08:48:10 MarkDuplicates Tracking 368533 as yet unmatched pairs. 19673 records in RAM.
INFO 2026-06-08 08:48:12 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:00s. Time for last 1,000,000: 2s. Last read position: chr14:64,025,374
INFO 2026-06-08 08:48:12 MarkDuplicates Tracking 366843 as yet unmatched pairs. 17979 records in RAM.
INFO 2026-06-08 08:48:14 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr14:67,783,453
INFO 2026-06-08 08:48:14 MarkDuplicates Tracking 365261 as yet unmatched pairs. 16397 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr14:73,112,214
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 363542 as yet unmatched pairs. 14678 records in RAM.
INFO 2026-06-08 08:48:17 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr14:75,654,967
INFO 2026-06-08 08:48:17 MarkDuplicates Tracking 361797 as yet unmatched pairs. 12930 records in RAM.
INFO 2026-06-08 08:48:18 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 1s. Last read position: chr14:91,799,005
INFO 2026-06-08 08:48:18 MarkDuplicates Tracking 360804 as yet unmatched pairs. 11936 records in RAM.
INFO 2026-06-08 08:48:20 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr14:99,645,709
INFO 2026-06-08 08:48:20 MarkDuplicates Tracking 358165 as yet unmatched pairs. 9297 records in RAM.
INFO 2026-06-08 08:48:21 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 1s. Last read position: chr14:102,039,457
INFO 2026-06-08 08:48:21 MarkDuplicates Tracking 356474 as yet unmatched pairs. 7605 records in RAM.
INFO 2026-06-08 08:48:23 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr14:103,679,512
INFO 2026-06-08 08:48:23 MarkDuplicates Tracking 355138 as yet unmatched pairs. 6266 records in RAM.
INFO 2026-06-08 08:48:24 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:13s. Time for last 1,000,000: 1s. Last read position: chr14:105,492,144
INFO 2026-06-08 08:48:24 MarkDuplicates Tracking 352468 as yet unmatched pairs. 3594 records in RAM.
INFO 2026-06-08 08:48:25 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,661
INFO 2026-06-08 08:48:25 MarkDuplicates Tracking 359704 as yet unmatched pairs. 10829 records in RAM.
INFO 2026-06-08 08:48:27 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr14:105,771,208
INFO 2026-06-08 08:48:27 MarkDuplicates Tracking 349859 as yet unmatched pairs. 984 records in RAM.
INFO 2026-06-08 08:48:28 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr15:33,154,474
INFO 2026-06-08 08:48:28 MarkDuplicates Tracking 347972 as yet unmatched pairs. 17287 records in RAM.
INFO 2026-06-08 08:48:30 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr15:41,396,525
INFO 2026-06-08 08:48:30 MarkDuplicates Tracking 346209 as yet unmatched pairs. 15523 records in RAM.
INFO 2026-06-08 08:48:31 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr15:43,746,503
INFO 2026-06-08 08:48:31 MarkDuplicates Tracking 344367 as yet unmatched pairs. 13681 records in RAM.
INFO 2026-06-08 08:48:33 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr15:49,424,491
INFO 2026-06-08 08:48:33 MarkDuplicates Tracking 342677 as yet unmatched pairs. 11991 records in RAM.
INFO 2026-06-08 08:48:34 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr15:63,062,525
INFO 2026-06-08 08:48:34 MarkDuplicates Tracking 341235 as yet unmatched pairs. 10549 records in RAM.
INFO 2026-06-08 08:48:36 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr15:66,499,415
INFO 2026-06-08 08:48:36 MarkDuplicates Tracking 339942 as yet unmatched pairs. 9255 records in RAM.
INFO 2026-06-08 08:48:38 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr15:73,984,066
INFO 2026-06-08 08:48:38 MarkDuplicates Tracking 337299 as yet unmatched pairs. 6601 records in RAM.
INFO 2026-06-08 08:48:40 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr15:77,028,637
INFO 2026-06-08 08:48:40 MarkDuplicates Tracking 335256 as yet unmatched pairs. 4558 records in RAM.
INFO 2026-06-08 08:48:42 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr15:84,199,437
INFO 2026-06-08 08:48:42 MarkDuplicates Tracking 333597 as yet unmatched pairs. 2899 records in RAM.
INFO 2026-06-08 08:48:43 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr15:90,230,477
INFO 2026-06-08 08:48:43 MarkDuplicates Tracking 332420 as yet unmatched pairs. 1722 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr16:263,715
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 330531 as yet unmatched pairs. 38542 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr16:1,584,320
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 328157 as yet unmatched pairs. 36168 records in RAM.
INFO 2026-06-08 08:48:48 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr16:2,233,087
INFO 2026-06-08 08:48:48 MarkDuplicates Tracking 325942 as yet unmatched pairs. 33950 records in RAM.
INFO 2026-06-08 08:48:50 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:11:38s. Time for last 1,000,000: 1s. Last read position: chr16:3,026,120
INFO 2026-06-08 08:48:50 MarkDuplicates Tracking 324007 as yet unmatched pairs. 32014 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr16:8,905,208
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 321812 as yet unmatched pairs. 29818 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr16:14,930,202
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 320166 as yet unmatched pairs. 28171 records in RAM.
INFO 2026-06-08 08:48:54 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 1s. Last read position: chr16:16,360,979
INFO 2026-06-08 08:48:54 MarkDuplicates Tracking 319088 as yet unmatched pairs. 27093 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr16:18,834,265
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 318387 as yet unmatched pairs. 26392 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr16:21,887,584
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 316993 as yet unmatched pairs. 24998 records in RAM.
INFO 2026-06-08 08:48:58 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:11:46s. Time for last 1,000,000: 1s. Last read position: chr16:24,968,414
INFO 2026-06-08 08:48:58 MarkDuplicates Tracking 315709 as yet unmatched pairs. 23714 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 1s. Last read position: chr16:28,845,034
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 314292 as yet unmatched pairs. 22297 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr16:29,986,891
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 312920 as yet unmatched pairs. 20924 records in RAM.
INFO 2026-06-08 08:49:02 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr16:30,707,639
INFO 2026-06-08 08:49:02 MarkDuplicates Tracking 312114 as yet unmatched pairs. 20118 records in RAM.
INFO 2026-06-08 08:49:04 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr16:31,185,155
INFO 2026-06-08 08:49:04 MarkDuplicates Tracking 318498 as yet unmatched pairs. 26502 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:11:53s. Time for last 1,000,000: 1s. Last read position: chr16:46,909,684
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 306836 as yet unmatched pairs. 14840 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr16:56,389,267
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 305447 as yet unmatched pairs. 13442 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 1s. Last read position: chr16:66,823,490
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 304026 as yet unmatched pairs. 12021 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr16:69,143,274
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 301970 as yet unmatched pairs. 9965 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:11:59s. Time for last 1,000,000: 1s. Last read position: chr16:71,753,865
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 299663 as yet unmatched pairs. 7657 records in RAM.
INFO 2026-06-08 08:49:12 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr16:81,445,517
INFO 2026-06-08 08:49:12 MarkDuplicates Tracking 297478 as yet unmatched pairs. 5470 records in RAM.
INFO 2026-06-08 08:49:14 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:02s. Time for last 1,000,000: 1s. Last read position: chr16:88,645,306
INFO 2026-06-08 08:49:14 MarkDuplicates Tracking 298851 as yet unmatched pairs. 6841 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr16:89,723,268
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 293446 as yet unmatched pairs. 1435 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 2s. Last read position: chr17:1,345,414
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 294345 as yet unmatched pairs. 102219 records in RAM.
INFO 2026-06-08 08:49:19 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr17:1,364,941
INFO 2026-06-08 08:49:19 MarkDuplicates Tracking 307686 as yet unmatched pairs. 115560 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:09s. Time for last 1,000,000: 1s. Last read position: chr17:1,675,181
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 287437 as yet unmatched pairs. 95310 records in RAM.
INFO 2026-06-08 08:49:22 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr17:2,379,192
INFO 2026-06-08 08:49:22 MarkDuplicates Tracking 285062 as yet unmatched pairs. 92935 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr17:4,143,768
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 283075 as yet unmatched pairs. 90934 records in RAM.
INFO 2026-06-08 08:49:25 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr17:4,944,844
INFO 2026-06-08 08:49:25 MarkDuplicates Tracking 281064 as yet unmatched pairs. 88923 records in RAM.
INFO 2026-06-08 08:49:27 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr17:5,461,059
INFO 2026-06-08 08:49:27 MarkDuplicates Tracking 278958 as yet unmatched pairs. 86817 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr17:7,462,219
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 276808 as yet unmatched pairs. 84667 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr17:8,175,760
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 275035 as yet unmatched pairs. 82893 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr17:16,353,345
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 272970 as yet unmatched pairs. 80828 records in RAM.
INFO 2026-06-08 08:49:32 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr17:18,245,935
INFO 2026-06-08 08:49:32 MarkDuplicates Tracking 270979 as yet unmatched pairs. 78837 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr17:28,395,946
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 269221 as yet unmatched pairs. 77078 records in RAM.
INFO 2026-06-08 08:49:35 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr17:29,122,187
INFO 2026-06-08 08:49:35 MarkDuplicates Tracking 267342 as yet unmatched pairs. 75198 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr17:32,367,856
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 265594 as yet unmatched pairs. 73447 records in RAM.
INFO 2026-06-08 08:49:38 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr17:35,844,927
INFO 2026-06-08 08:49:38 MarkDuplicates Tracking 264055 as yet unmatched pairs. 71907 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr17:38,508,813
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 261751 as yet unmatched pairs. 69603 records in RAM.
INFO 2026-06-08 08:49:42 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 2s. Last read position: chr17:39,709,863
INFO 2026-06-08 08:49:42 MarkDuplicates Tracking 266207 as yet unmatched pairs. 74059 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:12:32s. Time for last 1,000,000: 1s. Last read position: chr17:39,725,831
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 261260 as yet unmatched pairs. 69112 records in RAM.
INFO 2026-06-08 08:49:45 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr17:41,621,678
INFO 2026-06-08 08:49:45 MarkDuplicates Tracking 256241 as yet unmatched pairs. 64093 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr17:42,305,613
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 254331 as yet unmatched pairs. 62181 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:12:37s. Time for last 1,000,000: 1s. Last read position: chr17:43,492,744
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 251890 as yet unmatched pairs. 59739 records in RAM.
INFO 2026-06-08 08:49:50 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr17:45,245,035
INFO 2026-06-08 08:49:50 MarkDuplicates Tracking 249876 as yet unmatched pairs. 57719 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:12:40s. Time for last 1,000,000: 1s. Last read position: chr17:47,838,585
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 248561 as yet unmatched pairs. 56404 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,490
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 249152 as yet unmatched pairs. 56995 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,095
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 257429 as yet unmatched pairs. 65272 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,200
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 256346 as yet unmatched pairs. 64189 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,918
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 253672 as yet unmatched pairs. 61515 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,010
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 264252 as yet unmatched pairs. 72095 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,577
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 280198 as yet unmatched pairs. 88041 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,463
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 249852 as yet unmatched pairs. 57695 records in RAM.
INFO 2026-06-08 08:50:04 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,185
INFO 2026-06-08 08:50:04 MarkDuplicates Tracking 266901 as yet unmatched pairs. 74744 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,757
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 240493 as yet unmatched pairs. 48336 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr17:51,169,960
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 231529 as yet unmatched pairs. 39372 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr17:59,660,467
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 227713 as yet unmatched pairs. 35554 records in RAM.
INFO 2026-06-08 08:50:10 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr17:60,679,473
INFO 2026-06-08 08:50:10 MarkDuplicates Tracking 223909 as yet unmatched pairs. 31750 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr17:64,356,189
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 222919 as yet unmatched pairs. 30759 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr17:68,045,788
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 222412 as yet unmatched pairs. 30250 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr17:74,209,254
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 218237 as yet unmatched pairs. 26075 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr17:75,521,447
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 216322 as yet unmatched pairs. 24160 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr17:76,001,785
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 214510 as yet unmatched pairs. 22348 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr17:76,778,240
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 211844 as yet unmatched pairs. 19682 records in RAM.
INFO 2026-06-08 08:50:21 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:09s. Time for last 1,000,000: 1s. Last read position: chr17:79,085,683
INFO 2026-06-08 08:50:21 MarkDuplicates Tracking 209821 as yet unmatched pairs. 17654 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr17:80,373,045
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 208417 as yet unmatched pairs. 16250 records in RAM.
INFO 2026-06-08 08:50:23 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 1s. Last read position: chr17:81,629,765
INFO 2026-06-08 08:50:23 MarkDuplicates Tracking 207155 as yet unmatched pairs. 14988 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 1s. Last read position: chr17:81,859,236
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 209101 as yet unmatched pairs. 16934 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr17:82,051,927
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 201855 as yet unmatched pairs. 9688 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr17:82,083,100
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 207362 as yet unmatched pairs. 15195 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr17:82,087,222
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 206077 as yet unmatched pairs. 13910 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr17:82,093,631
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 197289 as yet unmatched pairs. 5122 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr17:82,911,764
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 193843 as yet unmatched pairs. 1672 records in RAM.
INFO 2026-06-08 08:50:34 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr18:9,126,873
INFO 2026-06-08 08:50:34 MarkDuplicates Tracking 191626 as yet unmatched pairs. 10174 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr18:13,593,566
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 188624 as yet unmatched pairs. 7172 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr18:32,413,100
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 187160 as yet unmatched pairs. 5707 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr18:50,269,653
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 186210 as yet unmatched pairs. 4756 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr18:62,574,058
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 183669 as yet unmatched pairs. 2214 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr18:80,137,987
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 181877 as yet unmatched pairs. 422 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr19:1,036,192
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 179575 as yet unmatched pairs. 71818 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr19:1,440,051
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 180568 as yet unmatched pairs. 72811 records in RAM.
INFO 2026-06-08 08:50:46 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr19:2,046,434
INFO 2026-06-08 08:50:46 MarkDuplicates Tracking 175539 as yet unmatched pairs. 67782 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr19:2,810,388
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 173402 as yet unmatched pairs. 65645 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 1s. Last read position: chr19:4,324,082
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 170192 as yet unmatched pairs. 62429 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr19:5,592,761
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 167829 as yet unmatched pairs. 60066 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:13:40s. Time for last 1,000,000: 1s. Last read position: chr19:6,364,555
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 165798 as yet unmatched pairs. 58035 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr19:7,611,934
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 163587 as yet unmatched pairs. 55820 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr19:8,486,354
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 162391 as yet unmatched pairs. 54623 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr19:10,378,223
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 159339 as yet unmatched pairs. 51571 records in RAM.
INFO 2026-06-08 08:50:59 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr19:10,989,314
INFO 2026-06-08 08:50:59 MarkDuplicates Tracking 157203 as yet unmatched pairs. 49435 records in RAM.
INFO 2026-06-08 08:51:01 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,770
INFO 2026-06-08 08:51:01 MarkDuplicates Tracking 155330 as yet unmatched pairs. 47562 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr19:12,891,783
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 154010 as yet unmatched pairs. 46242 records in RAM.
INFO 2026-06-08 08:51:04 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 1s. Last read position: chr19:13,073,087
INFO 2026-06-08 08:51:04 MarkDuplicates Tracking 152471 as yet unmatched pairs. 44703 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr19:14,480,593
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 149663 as yet unmatched pairs. 41895 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 1s. Last read position: chr19:15,180,084
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 148211 as yet unmatched pairs. 40443 records in RAM.
INFO 2026-06-08 08:51:08 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr19:16,088,081
INFO 2026-06-08 08:51:08 MarkDuplicates Tracking 150888 as yet unmatched pairs. 43120 records in RAM.
INFO 2026-06-08 08:51:10 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr19:17,330,865
INFO 2026-06-08 08:51:10 MarkDuplicates Tracking 143599 as yet unmatched pairs. 35831 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr19:18,436,793
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 142151 as yet unmatched pairs. 34383 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr19:19,342,435
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 139447 as yet unmatched pairs. 31678 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr19:32,658,941
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 139189 as yet unmatched pairs. 31418 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr19:35,278,995
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 135923 as yet unmatched pairs. 28152 records in RAM.
INFO 2026-06-08 08:51:17 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr19:38,192,309
INFO 2026-06-08 08:51:17 MarkDuplicates Tracking 132735 as yet unmatched pairs. 24964 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr19:39,173,142
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 131654 as yet unmatched pairs. 23882 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr19:40,242,620
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 130636 as yet unmatched pairs. 22864 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr19:41,869,056
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 129043 as yet unmatched pairs. 21271 records in RAM.
INFO 2026-06-08 08:51:22 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr19:42,370,783
INFO 2026-06-08 08:51:22 MarkDuplicates Tracking 124715 as yet unmatched pairs. 16942 records in RAM.
INFO 2026-06-08 08:51:25 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 2s. Last read position: chr19:45,368,982
INFO 2026-06-08 08:51:25 MarkDuplicates Tracking 122023 as yet unmatched pairs. 14250 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr19:47,067,724
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 121093 as yet unmatched pairs. 13320 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chr19:48,960,855
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 118276 as yet unmatched pairs. 10503 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr19:49,653,180
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 116190 as yet unmatched pairs. 8417 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr19:52,216,561
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 113943 as yet unmatched pairs. 6168 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:14:20s. Time for last 1,000,000: 1s. Last read position: chr19:54,974,498
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 111941 as yet unmatched pairs. 4166 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr19:57,687,371
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 109350 as yet unmatched pairs. 1575 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr20:1,370,024
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 109921 as yet unmatched pairs. 27461 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:14:26s. Time for last 1,000,000: 1s. Last read position: chr20:5,118,626
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 105721 as yet unmatched pairs. 23261 records in RAM.
INFO 2026-06-08 08:51:39 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr20:20,503,363
INFO 2026-06-08 08:51:39 MarkDuplicates Tracking 103365 as yet unmatched pairs. 20905 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr20:32,434,684
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 102679 as yet unmatched pairs. 20219 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr20:34,920,622
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 99757 as yet unmatched pairs. 17297 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr20:35,954,137
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 98115 as yet unmatched pairs. 15655 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr20:38,977,944
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 95645 as yet unmatched pairs. 13185 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr20:45,419,518
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 94078 as yet unmatched pairs. 11618 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr20:49,248,905
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 91860 as yet unmatched pairs. 9400 records in RAM.
INFO 2026-06-08 08:51:49 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr20:58,444,133
INFO 2026-06-08 08:51:49 MarkDuplicates Tracking 90413 as yet unmatched pairs. 7951 records in RAM.
INFO 2026-06-08 08:51:51 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: chr20:62,014,589
INFO 2026-06-08 08:51:51 MarkDuplicates Tracking 88232 as yet unmatched pairs. 5770 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: chr20:62,838,728
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 86066 as yet unmatched pairs. 3604 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 1s. Last read position: chr20:63,930,941
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 83718 as yet unmatched pairs. 1256 records in RAM.
INFO 2026-06-08 08:54:00 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 126s. Last read position: chr21:8,206,536
INFO 2026-06-08 08:54:00 MarkDuplicates Tracking 81723 as yet unmatched pairs. 21708 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:16:50s. Time for last 1,000,000: 1s. Last read position: chr21:8,258,885
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 81289 as yet unmatched pairs. 21270 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,962
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 81139 as yet unmatched pairs. 21120 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:16:52s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,290
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 80588 as yet unmatched pairs. 20569 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:16:54s. Time for last 1,000,000: 1s. Last read position: chr21:26,021,902
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 79817 as yet unmatched pairs. 19797 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:16:56s. Time for last 1,000,000: 1s. Last read position: chr21:32,373,762
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 77822 as yet unmatched pairs. 17802 records in RAM.
INFO 2026-06-08 08:54:08 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 1s. Last read position: chr21:33,603,408
INFO 2026-06-08 08:54:08 MarkDuplicates Tracking 75858 as yet unmatched pairs. 15838 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:16:58s. Time for last 1,000,000: 1s. Last read position: chr21:37,126,124
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 75888 as yet unmatched pairs. 15868 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 1s. Last read position: chr21:41,458,602
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 71817 as yet unmatched pairs. 11797 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:17:01s. Time for last 1,000,000: 1s. Last read position: chr21:43,803,577
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 73517 as yet unmatched pairs. 13497 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:17:03s. Time for last 1,000,000: 1s. Last read position: chr21:44,771,356
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 69029 as yet unmatched pairs. 9009 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:17:04s. Time for last 1,000,000: 1s. Last read position: chr21:45,989,093
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 66697 as yet unmatched pairs. 6675 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:17:06s. Time for last 1,000,000: 1s. Last read position: chr21:46,114,034
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 64690 as yet unmatched pairs. 4668 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:17:08s. Time for last 1,000,000: 1s. Last read position: chr21:46,334,392
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 61978 as yet unmatched pairs. 1956 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:17:10s. Time for last 1,000,000: 2s. Last read position: chr22:19,068,152
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 59420 as yet unmatched pairs. 27373 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 2s. Last read position: chr22:21,474,581
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 57133 as yet unmatched pairs. 25086 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 1s. Last read position: chr22:23,825,311
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 55657 as yet unmatched pairs. 23610 records in RAM.
INFO 2026-06-08 08:54:27 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:17:15s. Time for last 1,000,000: 1s. Last read position: chr22:28,629,602
INFO 2026-06-08 08:54:27 MarkDuplicates Tracking 53128 as yet unmatched pairs. 21081 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:17:17s. Time for last 1,000,000: 1s. Last read position: chr22:29,292,144
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 69241 as yet unmatched pairs. 37194 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr22:30,380,167
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 48666 as yet unmatched pairs. 16619 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:17:19s. Time for last 1,000,000: 1s. Last read position: chr22:35,421,321
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 46770 as yet unmatched pairs. 14723 records in RAM.
INFO 2026-06-08 08:54:32 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:17:21s. Time for last 1,000,000: 1s. Last read position: chr22:36,519,525
INFO 2026-06-08 08:54:32 MarkDuplicates Tracking 45240 as yet unmatched pairs. 13193 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:17:23s. Time for last 1,000,000: 1s. Last read position: chr22:38,488,010
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 43306 as yet unmatched pairs. 11259 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr22:40,827,219
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 40540 as yet unmatched pairs. 8493 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr22:41,880,745
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 39027 as yet unmatched pairs. 6980 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:17:27s. Time for last 1,000,000: 1s. Last read position: chr22:45,535,277
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 37200 as yet unmatched pairs. 5153 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:17:29s. Time for last 1,000,000: 1s. Last read position: chr22:50,246,319
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 34655 as yet unmatched pairs. 2608 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr22:50,731,203
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 32103 as yet unmatched pairs. 56 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 2s. Last read position: chrX:12,791,529
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 30172 as yet unmatched pairs. 27768 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 2s. Last read position: chrX:21,971,904
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 28623 as yet unmatched pairs. 26215 records in RAM.
INFO 2026-06-08 08:54:48 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chrX:40,063,750
INFO 2026-06-08 08:54:48 MarkDuplicates Tracking 26791 as yet unmatched pairs. 24382 records in RAM.
INFO 2026-06-08 08:54:50 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:17:38s. Time for last 1,000,000: 1s. Last read position: chrX:47,058,208
INFO 2026-06-08 08:54:50 MarkDuplicates Tracking 25084 as yet unmatched pairs. 22675 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:17:40s. Time for last 1,000,000: 1s. Last read position: chrX:48,823,486
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 23245 as yet unmatched pairs. 20836 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 1s. Last read position: chrX:51,901,691
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 22470 as yet unmatched pairs. 20061 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:17:43s. Time for last 1,000,000: 1s. Last read position: chrX:53,561,762
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 20477 as yet unmatched pairs. 18068 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:17:45s. Time for last 1,000,000: 1s. Last read position: chrX:64,190,523
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 16929 as yet unmatched pairs. 14520 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chrX:71,284,418
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 20426 as yet unmatched pairs. 18017 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:17:47s. Time for last 1,000,000: 1s. Last read position: chrX:75,296,370
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 13489 as yet unmatched pairs. 11080 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:17:49s. Time for last 1,000,000: 1s. Last read position: chrX:85,264,289
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 11758 as yet unmatched pairs. 9349 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chrX:103,609,181
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 10391 as yet unmatched pairs. 7982 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:17:53s. Time for last 1,000,000: 2s. Last read position: chrX:119,938,731
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 8492 as yet unmatched pairs. 6083 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:17:55s. Time for last 1,000,000: 2s. Last read position: chrX:139,782,565
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 6816 as yet unmatched pairs. 4407 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:17:57s. Time for last 1,000,000: 1s. Last read position: chrX:154,351,894
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 5568 as yet unmatched pairs. 3159 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chrX:154,887,122
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 2784 as yet unmatched pairs. 375 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:17:59s. Time for last 1,000,000: 1s. Last read position: GL000220.1:114,239
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 2272 as yet unmatched pairs. 466 records in RAM.
INFO 2026-06-08 08:55:12 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,160
INFO 2026-06-08 08:55:12 MarkDuplicates Tracking 1894 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: KI270733.1:130,985
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 5219 as yet unmatched pairs. 5196 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:18:02s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,039
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 37 as yet unmatched pairs. 14 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 558844815 records. 0 pairs never matched.
INFO 2026-06-08 08:55:29 MarkDuplicates After buildSortedReadEndLists freeMemory: 204141528; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:55:29 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:55:33 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 08:55:33 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:55:39 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 08:55:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,917
INFO 2026-06-08 08:55:39 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 08:55:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,552
INFO 2026-06-08 08:55:40 OpticalDuplicateFinder Large duplicate set. size = 1136
INFO 2026-06-08 08:55:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,463
INFO 2026-06-08 08:55:40 OpticalDuplicateFinder Large duplicate set. size = 1826
INFO 2026-06-08 08:55:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,358
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1047
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,618
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,776
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1477
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,431
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1938
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,522
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,448
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1457
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,033
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1003
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,982
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1329
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,051
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,843
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1197
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,789
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,829
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1678
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,662
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1732
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,689
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,378
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1271
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,704
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 2402
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,506
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,692
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder Large duplicate set. size = 1181
INFO 2026-06-08 08:55:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,200
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder Large duplicate set. size = 1293
INFO 2026-06-08 08:55:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,702
INFO 2026-06-08 08:55:49 OpticalDuplicateFinder Large duplicate set. size = 1361
INFO 2026-06-08 08:55:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,524
INFO 2026-06-08 08:56:05 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 08:56:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,894
INFO 2026-06-08 08:56:05 OpticalDuplicateFinder Large duplicate set. size = 2311
INFO 2026-06-08 08:56:05 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,666
INFO 2026-06-08 08:56:05 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,467
INFO 2026-06-08 08:56:06 OpticalDuplicateFinder Large duplicate set. size = 1061
INFO 2026-06-08 08:56:06 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,972
INFO 2026-06-08 08:56:13 OpticalDuplicateFinder Large duplicate set. size = 1106
INFO 2026-06-08 08:56:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,493
INFO 2026-06-08 08:56:13 OpticalDuplicateFinder Large duplicate set. size = 1159
INFO 2026-06-08 08:56:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,580
INFO 2026-06-08 08:56:13 OpticalDuplicateFinder Large duplicate set. size = 1070
INFO 2026-06-08 08:56:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,716
INFO 2026-06-08 08:56:14 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 08:56:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,948
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,680
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder Large duplicate set. size = 1561
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,296
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder Large duplicate set. size = 2540
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,759
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,170
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder Large duplicate set. size = 1431
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,922
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder Large duplicate set. size = 1216
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,550
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder Large duplicate set. size = 1336
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,853
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder Large duplicate set. size = 1110
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,208
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder Large duplicate set. size = 1518
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,525
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 08:56:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,475
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder Large duplicate set. size = 1183
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,449
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder Large duplicate set. size = 1711
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,168
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,267
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder Large duplicate set. size = 1025
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,591
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder Large duplicate set. size = 1290
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,884
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder Large duplicate set. size = 1516
INFO 2026-06-08 08:56:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,403
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,949
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,868
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 2311
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,396
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,664
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,988
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 2978
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,378
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,924
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1321
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,693
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1400
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,604
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 2007
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,464
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,034
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1690
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,626
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,055
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1388
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,077
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,745
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1589
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,248
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 2512
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,211
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,175
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1174
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,070
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,519
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 08:56:21 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,739
INFO 2026-06-08 08:56:23 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 08:56:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,705
INFO 2026-06-08 08:56:27 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 08:56:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,537
INFO 2026-06-08 08:56:27 OpticalDuplicateFinder Large duplicate set. size = 1179
INFO 2026-06-08 08:56:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,750
INFO 2026-06-08 08:56:27 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 08:56:27 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,003
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,817
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder Large duplicate set. size = 1086
INFO 2026-06-08 08:56:49 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,372
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1314
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,732
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1671
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,085
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1562
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,947
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,436
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1457
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,045
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,742
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,575
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1698
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,643
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1176
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,332
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 08:56:51 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,640
INFO 2026-06-08 08:56:54 OpticalDuplicateFinder Large duplicate set. size = 1369
INFO 2026-06-08 08:56:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,173
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,108
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1372
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,049
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1415
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,983
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 2170
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,909
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,435
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1422
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,406
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1514
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,808
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 2225
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,523
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,721
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1480
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,573
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 3490
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,221
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,937
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,225
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,828
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1612
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,678
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1188
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,614
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1601
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,720
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,276
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 2611
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,710
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,846
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1966
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,571
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1910
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,368
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1072
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,982
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1847
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,884
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1948
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,136
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1052
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,458
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 4291
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,314
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,693
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,334
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,985
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1175
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,055
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1461
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,682
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,996
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1154
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,577
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1515
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,665
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,552
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:56:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,444
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,535
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,424
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1479
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,685
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,130
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1443
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,514
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1291
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,866
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1385
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,766
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,584
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1270
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,009
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,357
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1358
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,445
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1719
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,653
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1402
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,859
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 3222
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,316
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,676
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,661
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1056
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,662
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1343
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,202
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1314
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,229
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder Large duplicate set. size = 1191
INFO 2026-06-08 08:56:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,533
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1757
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,527
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1141
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,731
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,126
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1938
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,971
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1509
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,428
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1182
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,591
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1848
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,607
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 2143
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,823
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,445
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1508
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,505
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1007
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,017
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1697
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,895
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 3496
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,434
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,325
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,265
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,611
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1222
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,608
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1326
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,695
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 3807
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,015
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,212
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,031
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,744
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 2733
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,952
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,159
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1552
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,951
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1645
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,014
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1265
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,791
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1299
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,481
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1489
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,479
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1160
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,910
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 2283
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,744
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,672
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 2156
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,630
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,908
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1496
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,605
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1124
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,734
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1143
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,761
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1732
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,079
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,702
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1335
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,364
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 2145
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,789
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,432
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1501
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,916
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1482
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,173
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,211
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 2389
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,119
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,243
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1247
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,466
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1276
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,199
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1196
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,360
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder Large duplicate set. size = 1827
INFO 2026-06-08 08:56:57 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,255
INFO 2026-06-08 08:57:08 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 08:57:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,659
INFO 2026-06-08 08:57:09 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 08:57:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,520
INFO 2026-06-08 08:57:13 OpticalDuplicateFinder Large duplicate set. size = 1257
INFO 2026-06-08 08:57:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,944
INFO 2026-06-08 08:57:14 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:57:14 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:58:12 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:58:20 MarkDuplicates After generateDuplicateIndexes freeMemory: 203869464; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:58:20 MarkDuplicates Marking 398465732 records as duplicates.
INFO 2026-06-08 08:58:20 MarkDuplicates Found 15392791 optical duplicate clusters.
INFO 2026-06-08 08:58:20 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:58:36 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:16s. Time for last 10,000,000: 16s. Last read position: chr1:32,014,264
INFO 2026-06-08 08:58:52 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:32s. Time for last 10,000,000: 16s. Last read position: chr1:96,679,358
INFO 2026-06-08 08:59:09 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:48s. Time for last 10,000,000: 16s. Last read position: chr1:149,476,006
INFO 2026-06-08 08:59:24 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:04s. Time for last 10,000,000: 15s. Last read position: chr1:154,176,140
INFO 2026-06-08 08:59:40 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:20s. Time for last 10,000,000: 15s. Last read position: chr1:157,125,860
INFO 2026-06-08 08:59:56 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:36s. Time for last 10,000,000: 15s. Last read position: chr1:182,386,279
INFO 2026-06-08 09:00:12 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:52s. Time for last 10,000,000: 16s. Last read position: chr1:244,054,198
INFO 2026-06-08 09:00:29 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:09s. Time for last 10,000,000: 16s. Last read position: chr2:43,224,567
INFO 2026-06-08 09:00:45 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:25s. Time for last 10,000,000: 16s. Last read position: chr2:98,554,489
INFO 2026-06-08 09:01:02 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:41s. Time for last 10,000,000: 16s. Last read position: chr2:202,265,964
INFO 2026-06-08 09:01:18 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:58s. Time for last 10,000,000: 16s. Last read position: chr3:9,918,397
INFO 2026-06-08 09:01:35 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:15s. Time for last 10,000,000: 16s. Last read position: chr3:49,278,296
INFO 2026-06-08 09:01:51 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 16s. Last read position: chr3:129,519,165
INFO 2026-06-08 09:02:08 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:47s. Time for last 10,000,000: 16s. Last read position: chr4:2,938,874
INFO 2026-06-08 09:02:24 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:04s. Time for last 10,000,000: 16s. Last read position: chr4:159,314,632
INFO 2026-06-08 09:02:40 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:20s. Time for last 10,000,000: 16s. Last read position: chr5:83,490,138
INFO 2026-06-08 09:02:56 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:36s. Time for last 10,000,000: 16s. Last read position: chr5:171,391,371
INFO 2026-06-08 09:03:12 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:52s. Time for last 10,000,000: 16s. Last read position: chr6:29,944,324
INFO 2026-06-08 09:03:29 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:08s. Time for last 10,000,000: 16s. Last read position: chr6:43,525,874
INFO 2026-06-08 09:03:45 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:25s. Time for last 10,000,000: 16s. Last read position: chr6:158,787,185
INFO 2026-06-08 09:04:01 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:41s. Time for last 10,000,000: 16s. Last read position: chr7:74,056,303
INFO 2026-06-08 09:04:18 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:58s. Time for last 10,000,000: 17s. Last read position: chr7:116,251,925
INFO 2026-06-08 09:04:35 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:14s. Time for last 10,000,000: 16s. Last read position: chr8:11,846,528
INFO 2026-06-08 09:04:51 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:31s. Time for last 10,000,000: 16s. Last read position: chr8:88,167,751
INFO 2026-06-08 09:05:07 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:47s. Time for last 10,000,000: 16s. Last read position: chr8:144,248,914
INFO 2026-06-08 09:05:24 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:03s. Time for last 10,000,000: 16s. Last read position: chr9:89,349,656
INFO 2026-06-08 09:05:40 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:20s. Time for last 10,000,000: 16s. Last read position: chr9:135,821,443
INFO 2026-06-08 09:05:56 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:36s. Time for last 10,000,000: 16s. Last read position: chr10:32,028,482
INFO 2026-06-08 09:06:12 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:52s. Time for last 10,000,000: 16s. Last read position: chr10:79,297,656
INFO 2026-06-08 09:06:29 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:08s. Time for last 10,000,000: 16s. Last read position: chr11:2,132,926
INFO 2026-06-08 09:06:46 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:25s. Time for last 10,000,000: 17s. Last read position: chr11:47,425,867
INFO 2026-06-08 09:07:02 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:42s. Time for last 10,000,000: 16s. Last read position: chr11:66,848,936
INFO 2026-06-08 09:07:18 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:08:58s. Time for last 10,000,000: 16s. Last read position: chr12:6,026,032
INFO 2026-06-08 09:07:35 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:14s. Time for last 10,000,000: 16s. Last read position: chr12:56,098,514
INFO 2026-06-08 09:07:51 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:31s. Time for last 10,000,000: 16s. Last read position: chr12:121,004,257
INFO 2026-06-08 09:08:07 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:09:47s. Time for last 10,000,000: 16s. Last read position: chr14:21,231,041
INFO 2026-06-08 09:08:24 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:03s. Time for last 10,000,000: 16s. Last read position: chr14:99,645,709
INFO 2026-06-08 09:08:40 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 15s. Last read position: chr15:63,062,525
INFO 2026-06-08 09:08:56 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:35s. Time for last 10,000,000: 16s. Last read position: chr16:8,905,208
INFO 2026-06-08 09:09:12 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 16s. Last read position: chr16:46,909,684
INFO 2026-06-08 09:09:28 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:08s. Time for last 10,000,000: 16s. Last read position: chr17:1,675,181
INFO 2026-06-08 09:09:44 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:24s. Time for last 10,000,000: 16s. Last read position: chr17:29,122,187
INFO 2026-06-08 09:10:00 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:40s. Time for last 10,000,000: 16s. Last read position: chr17:47,838,585
INFO 2026-06-08 09:10:16 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:11:56s. Time for last 10,000,000: 16s. Last read position: chr17:51,169,960
INFO 2026-06-08 09:10:32 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:12s. Time for last 10,000,000: 16s. Last read position: chr17:80,373,045
INFO 2026-06-08 09:10:48 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:28s. Time for last 10,000,000: 15s. Last read position: chr18:32,413,100
INFO 2026-06-08 09:11:04 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:12:44s. Time for last 10,000,000: 16s. Last read position: chr19:6,364,555
INFO 2026-06-08 09:11:20 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:00s. Time for last 10,000,000: 16s. Last read position: chr19:16,088,081
INFO 2026-06-08 09:11:37 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:16s. Time for last 10,000,000: 16s. Last read position: chr19:42,370,783
INFO 2026-06-08 09:11:53 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:32s. Time for last 10,000,000: 16s. Last read position: chr20:20,503,363
INFO 2026-06-08 09:12:09 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:13:48s. Time for last 10,000,000: 16s. Last read position: chr20:63,930,941
INFO 2026-06-08 09:12:24 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:04s. Time for last 10,000,000: 15s. Last read position: chr21:43,803,577
INFO 2026-06-08 09:12:40 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:20s. Time for last 10,000,000: 16s. Last read position: chr22:30,380,167
INFO 2026-06-08 09:12:56 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:36s. Time for last 10,000,000: 16s. Last read position: chrX:21,971,904
INFO 2026-06-08 09:13:13 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:14:53s. Time for last 10,000,000: 16s. Last read position: chrX:103,609,181
INFO 2026-06-08 09:13:29 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:09s. Time for last 10,000,000: 16s. Last read position: */*
INFO 2026-06-08 09:13:32 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:13:32 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:13:32 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:13:32 MarkDuplicates Before output close freeMemory: 203819200; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:13:32 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:13:32 MarkDuplicates After output close freeMemory: 104070936; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:13:32 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 36.38 minutes.
Runtime.totalMemory()=134217728
Tool returned:
0
ls: *cram: No such file or directory
ls: *.crai: No such file or directory