Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/e6b2cc742a31d3656cb4de18fcadbc/fi_workdir/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/0c3fc9ca62db1daa37647f3d9948ef/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/0c3fc9ca62db1daa37647f3d9948ef/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 16117
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 16117
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:16117
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADAM10--CCNB2 HAVANA gene 1085 35422 . + . FI_gene_label "ADAM10^ENSG00000137845.15" ; ID "ADAM10--CCNB2^ADAM10^ENSG00000137845.15" ; ccdsid "CCDS10167.1" ; exon_id "ENSE00002542201.1" ; exon_number 1 ; gene_id "ADAM10--CCNB2^ADAM10^ENSG00000137845.15" ; gene_name ADAM10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132633.11" ; havana_transcript "OTTHUMT00000255880.4" ; hgnc_id "HGNC:188" ; level 2 ; orig_coord_info "chr15,58749480,58749534,-" ; protein_id "ENSP00000260408.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAM10--CCNB2^ENST00000260408.8" ; transcript_name "ADAM10-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAM10--CCNB2 HAVANA mRNA 1085 35422 . + . FI_gene_label "ADAM10^ENSG00000137845.15" ; ID "ADAM10--CCNB2^ENST00000260408.8" ; Parent "ADAM10--CCNB2^ADAM10^ENSG00000137845.15" ; ccdsid "CCDS10167.1" ; exon_id "ENSE00002542201.1" ; exon_number 1 ; gene_id "ADAM10--CCNB2^ADAM10^ENSG00000137845.15" ; gene_name ADAM10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132633.11" ; havana_transcript "OTTHUMT00000255880.4" ; hgnc_id "HGNC:188" ; level 2 ; orig_coord_info "chr15,58749480,58749534,-" ; protein_id "ENSP00000260408.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAM10--CCNB2^ENST00000260408.8" ; transcript_name "ADAM10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADAM10--CCNB2 HAVANA gene 38443 45579 . + . FI_gene_label "CCNB2^ENSG00000157456.8" ; ID "ADAM10--CCNB2^CCNB2^ENSG00000157456.8" ; ccdsid "CCDS10170.1" ; exon_id "ENSE00001032710.3" ; exon_number 1 ; gene_id "ADAM10--CCNB2^CCNB2^ENSG00000157456.8" ; gene_name CCNB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132715.3" ; havana_transcript "OTTHUMT00000256016.2" ; hgnc_id "HGNC:1580" ; level 2 ; orig_coord_info "chr15,59105269,59105292,+" ; protein_id "ENSP00000288207.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAM10--CCNB2^ENST00000288207.7" ; transcript_name "CCNB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAM10--CCNB2 HAVANA mRNA 38443 45579 . + . FI_gene_label "CCNB2^ENSG00000157456.8" ; ID "ADAM10--CCNB2^ENST00000288207.7" ; Parent "ADAM10--CCNB2^CCNB2^ENSG00000157456.8" ; ccdsid "CCDS10170.1" ; exon_id "ENSE00001032710.3" ; exon_number 1 ; gene_id "ADAM10--CCNB2^CCNB2^ENSG00000157456.8" ; gene_name CCNB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132715.3" ; havana_transcript "OTTHUMT00000256016.2" ; hgnc_id "HGNC:1580" ; level 2 ; orig_coord_info "chr15,59105269,59105292,+" ; protein_id "ENSP00000288207.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAM10--CCNB2^ENST00000288207.7" ; transcript_name "CCNB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADAM10--RNF111 HAVANA gene 1085 35422 . + . FI_gene_label "ADAM10^ENSG00000137845.15" ; ID "ADAM10--RNF111^ADAM10^ENSG00000137845.15" ; ccdsid "CCDS10167.1" ; exon_id "ENSE00002542201.1" ; exon_number 1 ; gene_id "ADAM10--RNF111^ADAM10^ENSG00000137845.15" ; gene_name ADAM10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132633.11" ; havana_transcript "OTTHUMT00000255880.4" ; hgnc_id "HGNC:188" ; level 2 ; orig_coord_info "chr15,58749480,58749534,-" ; protein_id "ENSP00000260408.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAM10--RNF111^ENST00000260408.8" ; transcript_name "ADAM10-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAM10--RNF111 HAVANA mRNA 1085 35422 . + . FI_gene_label "ADAM10^ENSG00000137845.15" ; ID "ADAM10--RNF111^ENST00000260408.8" ; Parent "ADAM10--RNF111^ADAM10^ENSG00000137845.15" ; ccdsid "CCDS10167.1" ; exon_id "ENSE00002542201.1" ; exon_number 1 ; gene_id "ADAM10--RNF111^ADAM10^ENSG00000137845.15" ; gene_name ADAM10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132633.11" ; havana_transcript "OTTHUMT00000255880.4" ; hgnc_id "HGNC:188" ; level 2 ; orig_coord_info "chr15,58749480,58749534,-" ; protein_id "ENSP00000260408.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ADAM10--RNF111^ENST00000260408.8" ; transcript_name "ADAM10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADAM10--RNF111 HAVANA gene 38423 60297 . + . FI_gene_label "RNF111^ENSG00000157450.16" ; ID "ADAM10--RNF111^RNF111^ENSG00000157450.16" ; ccdsid "CCDS10169.1" ; exon_id "ENSE00001336191.2" ; exon_number 2 ; gene_id "ADAM10--RNF111^RNF111^ENSG00000157450.16" ; gene_name RNF111 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132716.3" ; havana_transcript "OTTHUMT00000256017.2" ; hgnc_id "HGNC:17384" ; level 2 ; orig_coord_info "chr15,59030823,59031702,+" ; protein_id "ENSP00000288199.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ADAM10--RNF111^ENST00000348370.9" ; transcript_name "RNF111-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADAM10--RNF111 HAVANA mRNA 38423 60297 . + . FI_gene_label "RNF111^ENSG00000157450.16" ; ID "ADAM10--RNF111^ENST00000348370.9" ; Parent "ADAM10--RNF111^RNF111^ENSG00000157450.16" ; ccdsid "CCDS10169.1" ; exon_id "ENSE00001336191.2" ; exon_number 2 ; gene_id "ADAM10--RNF111^RNF111^ENSG00000157450.16" ; gene_name RNF111 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132716.3" ; havana_transcript "OTTHUMT00000256017.2" ; hgnc_id "HGNC:17384" ; level 2 ; orig_coord_info "chr15,59030823,59031702,+" ; protein_id "ENSP00000288199.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ADAM10--RNF111^ENST00000348370.9" ; transcript_name "RNF111-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADD2--BCL2L11 HAVANA gene 1026 30702 . + . FI_gene_label "ADD2^ENSG00000075340.23" ; ID "ADD2--BCL2L11^ADD2^ENSG00000075340.23" ; ccdsid "CCDS1906.1" ; exon_id "ENSE00003539469.1" ; exon_number 3 ; gene_id "ADD2--BCL2L11^ADD2^ENSG00000075340.23" ; gene_name ADD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129710.15" ; havana_transcript "OTTHUMT00000251918.5" ; hgnc_id "HGNC:244" ; level 2 ; orig_coord_info "chr2,70706226,70706408,-" ; protein_id "ENSP00000264436.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ADD2--BCL2L11^ENST00000264436.9" ; transcript_name "ADD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ADD2--BCL2L11 HAVANA mRNA 1026 30702 . + . FI_gene_label "ADD2^ENSG00000075340.23" ; ID "ADD2--BCL2L11^ENST00000264436.9" ; Parent "ADD2--BCL2L11^ADD2^ENSG00000075340.23" ; ccdsid "CCDS1906.1" ; exon_id "ENSE00003539469.1" ; exon_number 3 ; gene_id "ADD2--BCL2L11^ADD2^ENSG00000075340.23" ; gene_name ADD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129710.15" ; havana_transcript "OTTHUMT00000251918.5" ; hgnc_id "HGNC:244" ; level 2 ; orig_coord_info "chr2,70706226,70706408,-" ; protein_id "ENSP00000264436.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ADD2--BCL2L11^ENST00000264436.9" ; transcript_name "ADD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ADD2--BCL2L11 HAVANA gene 40416 55291 . + . FI_gene_label "BCL2L11^ENSG00000153094.24" ; ID "ADD2--BCL2L11^BCL2L11^ENSG00000153094.24" ; ccdsid "CCDS42731.1" ; exon_id "ENSE00001418123.1" ; exon_number 2 ; gene_id "ADD2--BCL2L11^BCL2L11^ENSG00000153094.24" ; gene_name BCL2L11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131256.10" ; havana_transcript "OTTHUMT00000331936.1" ; hgnc_id "HGNC:994" ; level 2 ; orig_coord_info "chr2,111123746,111123869,+" ; protein_id "ENSP00000309226.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "ADD2--BCL2L11^ENST00000308659.12" ; transcript_name "BCL2L11-201" ; transcript_support_level 2 ; transcript_type protein_coding
ADD2--BCL2L11 HAVANA mRNA 40416 55291 . + . FI_gene_label "BCL2L11^ENSG00000153094.24" ; ID "ADD2--BCL2L11^ENST00000308659.12" ; Parent "ADD2--BCL2L11^BCL2L11^ENSG00000153094.24" ; ccdsid "CCDS42731.1" ; exon_id "ENSE00001418123.1" ; exon_number 2 ; gene_id "ADD2--BCL2L11^BCL2L11^ENSG00000153094.24" ; gene_name BCL2L11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131256.10" ; havana_transcript "OTTHUMT00000331936.1" ; hgnc_id "HGNC:994" ; level 2 ; orig_coord_info "chr2,111123746,111123869,+" ; protein_id "ENSP00000309226.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "ADD2--BCL2L11^ENST00000308659.12" ; transcript_name "BCL2L11-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AKAP13--RASGRF1 HAVANA gene 1159 58149 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "AKAP13--RASGRF1^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "AKAP13--RASGRF1^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AKAP13--RASGRF1^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP13--RASGRF1 HAVANA mRNA 1159 58149 . + . FI_gene_label "AKAP13^ENSG00000170776.22" ; ID "AKAP13--RASGRF1^ENST00000361243.6" ; Parent "AKAP13--RASGRF1^AKAP13^ENSG00000170776.22" ; ccdsid "CCDS32320.1" ; exon_id "ENSE00002705517.1" ; exon_number 2 ; gene_id "AKAP13--RASGRF1^AKAP13^ENSG00000170776.22" ; gene_name AKAP13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172205.3" ; havana_transcript "OTTHUMT00000417319.1" ; hgnc_id "HGNC:371" ; level 2 ; orig_coord_info "chr15,85485721,85485753,+" ; protein_id "ENSP00000354718.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "AKAP13--RASGRF1^ENST00000361243.6" ; transcript_name "AKAP13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AKAP13--RASGRF1 HAVANA gene 81564 99839 . + . FI_gene_label "RASGRF1^ENSG00000058335.16" ; ID "AKAP13--RASGRF1^RASGRF1^ENSG00000058335.16" ; ccdsid "CCDS42065.1" ; exon_id "ENSE00003680240.1" ; exon_number 2 ; gene_id "AKAP13--RASGRF1^RASGRF1^ENSG00000058335.16" ; gene_name RASGRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000144172.3" ; havana_transcript "OTTHUMT00000418829.1" ; hgnc_id "HGNC:9875" ; level 2 ; orig_coord_info "chr15,79003802,79003946,-" ; protein_id "ENSP00000378228.3" ; tag basic CCDS ; transcript_id "AKAP13--RASGRF1^ENST00000394745.3" ; transcript_name "RASGRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AKAP13--RASGRF1 HAVANA mRNA 81564 99839 . + . FI_gene_label "RASGRF1^ENSG00000058335.16" ; ID "AKAP13--RASGRF1^ENST00000394745.3" ; Parent "AKAP13--RASGRF1^RASGRF1^ENSG00000058335.16" ; ccdsid "CCDS42065.1" ; exon_id "ENSE00003680240.1" ; exon_number 2 ; gene_id "AKAP13--RASGRF1^RASGRF1^ENSG00000058335.16" ; gene_name RASGRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000144172.3" ; havana_transcript "OTTHUMT00000418829.1" ; hgnc_id "HGNC:9875" ; level 2 ; orig_coord_info "chr15,79003802,79003946,-" ; protein_id "ENSP00000378228.3" ; tag basic CCDS ; transcript_id "AKAP13--RASGRF1^ENST00000394745.3" ; transcript_name "RASGRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARNT--FDPS HAVANA gene 1130 24677 . + . FI_gene_label "ARNT^ENSG00000143437.21" ; ID "ARNT--FDPS^ARNT^ENSG00000143437.21" ; ccdsid "CCDS65642.1" ; exon_id "ENSE00002072659.1" ; exon_number 1 ; gene_id "ARNT--FDPS^ARNT^ENSG00000143437.21" ; gene_name ARNT ; gene_type protein_coding ; havana_gene "OTTHUMG00000035011.4" ; havana_transcript "OTTHUMT00000360630.1" ; hgnc_id "HGNC:700" ; level 1 ; orig_coord_info "chr1,150876543,150876567,-" ; protein_id "ENSP00000346372.2" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "ARNT--FDPS^ENST00000354396.6" ; transcript_name "ARNT-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARNT--FDPS HAVANA mRNA 1130 24677 . + . FI_gene_label "ARNT^ENSG00000143437.21" ; ID "ARNT--FDPS^ENST00000354396.6" ; Parent "ARNT--FDPS^ARNT^ENSG00000143437.21" ; ccdsid "CCDS65642.1" ; exon_id "ENSE00002072659.1" ; exon_number 1 ; gene_id "ARNT--FDPS^ARNT^ENSG00000143437.21" ; gene_name ARNT ; gene_type protein_coding ; havana_gene "OTTHUMG00000035011.4" ; havana_transcript "OTTHUMT00000360630.1" ; hgnc_id "HGNC:700" ; level 1 ; orig_coord_info "chr1,150876543,150876567,-" ; protein_id "ENSP00000346372.2" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "ARNT--FDPS^ENST00000354396.6" ; transcript_name "ARNT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARNT--FDPS HAVANA gene 28992 35979 . + . FI_gene_label "FDPS^ENSG00000160752.15" ; ID "ARNT--FDPS^FDPS^ENSG00000160752.15" ; ccdsid "CCDS1110.1" ; exon_id "ENSE00001446957.1" ; exon_number 2 ; gene_id "ARNT--FDPS^FDPS^ENSG00000160752.15" ; gene_name FDPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000013909.3" ; havana_transcript "OTTHUMT00000039053.1" ; hgnc_id "HGNC:3631" ; level 2 ; orig_coord_info "chr1,155309790,155309965,+" ; protein_id "ENSP00000349078.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "ARNT--FDPS^ENST00000356657.10" ; transcript_name "FDPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARNT--FDPS HAVANA mRNA 28992 35979 . + . FI_gene_label "FDPS^ENSG00000160752.15" ; ID "ARNT--FDPS^ENST00000356657.10" ; Parent "ARNT--FDPS^FDPS^ENSG00000160752.15" ; ccdsid "CCDS1110.1" ; exon_id "ENSE00001446957.1" ; exon_number 2 ; gene_id "ARNT--FDPS^FDPS^ENSG00000160752.15" ; gene_name FDPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000013909.3" ; havana_transcript "OTTHUMT00000039053.1" ; hgnc_id "HGNC:3631" ; level 2 ; orig_coord_info "chr1,155309790,155309965,+" ; protein_id "ENSP00000349078.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "ARNT--FDPS^ENST00000356657.10" ; transcript_name "FDPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^ENST00000239859.8" ; Parent "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^ENST00000317764.6" ; Parent "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COPS3--SPECC1 HAVANA gene 25068 56045 . + . FI_gene_label "SPECC1^ENSG00000128487.18" ; ID "COPS3--SPECC1^SPECC1^ENSG00000128487.18" ; ccdsid "CCDS32590.1" ; exon_id "ENSE00003538827.1" ; exon_number 2 ; gene_id "COPS3--SPECC1^SPECC1^ENSG00000128487.18" ; gene_name SPECC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179808.4" ; havana_transcript "OTTHUMT00000441206.1" ; hgnc_id "HGNC:30615" ; level 2 ; orig_coord_info "chr17,20096652,20096798,+" ; protein_id "ENSP00000261503.5" ; tag basic appris_principal_3 CCDS ; transcript_id "COPS3--SPECC1^ENST00000261503.9" ; transcript_name "SPECC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
COPS3--SPECC1 HAVANA mRNA 25068 56045 . + . FI_gene_label "SPECC1^ENSG00000128487.18" ; ID "COPS3--SPECC1^ENST00000261503.9" ; Parent "COPS3--SPECC1^SPECC1^ENSG00000128487.18" ; ccdsid "CCDS32590.1" ; exon_id "ENSE00003538827.1" ; exon_number 2 ; gene_id "COPS3--SPECC1^SPECC1^ENSG00000128487.18" ; gene_name SPECC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179808.4" ; havana_transcript "OTTHUMT00000441206.1" ; hgnc_id "HGNC:30615" ; level 2 ; orig_coord_info "chr17,20096652,20096798,+" ; protein_id "ENSP00000261503.5" ; tag basic appris_principal_3 CCDS ; transcript_id "COPS3--SPECC1^ENST00000261503.9" ; transcript_name "SPECC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COPS3--SPECC1 HAVANA gene 1028 13830 . + . FI_gene_label "COPS3^ENSG00000141030.13" ; ID "COPS3--SPECC1^COPS3^ENSG00000141030.13" ; ccdsid "CCDS11183.1" ; exon_id "ENSE00001901824.1" ; exon_number 1 ; gene_id "COPS3--SPECC1^COPS3^ENSG00000141030.13" ; gene_name COPS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059281.7" ; havana_transcript "OTTHUMT00000131603.3" ; hgnc_id "HGNC:2239" ; level 2 ; orig_coord_info "chr17,17281132,17281186,-" ; protein_id "ENSP00000268717.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COPS3--SPECC1^ENST00000268717.10" ; transcript_name "COPS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
COPS3--SPECC1 HAVANA mRNA 1028 13830 . + . FI_gene_label "COPS3^ENSG00000141030.13" ; ID "COPS3--SPECC1^ENST00000268717.10" ; Parent "COPS3--SPECC1^COPS3^ENSG00000141030.13" ; ccdsid "CCDS11183.1" ; exon_id "ENSE00001901824.1" ; exon_number 1 ; gene_id "COPS3--SPECC1^COPS3^ENSG00000141030.13" ; gene_name COPS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059281.7" ; havana_transcript "OTTHUMT00000131603.3" ; hgnc_id "HGNC:2239" ; level 2 ; orig_coord_info "chr17,17281132,17281186,-" ; protein_id "ENSP00000268717.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COPS3--SPECC1^ENST00000268717.10" ; transcript_name "COPS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DST--ITPR2 HAVANA gene 132774 138509 . + . FI_gene_label "ITPR2^ENSG00000123104.12" ; ID "DST--ITPR2^ITPR2^ENSG00000123104.12" ; exon_id "ENSE00002282656.1" ; exon_number 1 ; gene_id "DST--ITPR2^ITPR2^ENSG00000123104.12" ; gene_name ITPR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169181.5" ; havana_transcript "OTTHUMT00000402735.1" ; hgnc_id "HGNC:6181" ; level 2 ; orig_coord_info "chr12,26832690,26832781,-" ; protein_id "ENSP00000242737.5" ; tag basic ; transcript_id "DST--ITPR2^ENST00000242737.5" ; transcript_name "ITPR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DST--ITPR2 HAVANA mRNA 132774 138509 . + . FI_gene_label "ITPR2^ENSG00000123104.12" ; ID "DST--ITPR2^ENST00000242737.5" ; Parent "DST--ITPR2^ITPR2^ENSG00000123104.12" ; exon_id "ENSE00002282656.1" ; exon_number 1 ; gene_id "DST--ITPR2^ITPR2^ENSG00000123104.12" ; gene_name ITPR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169181.5" ; havana_transcript "OTTHUMT00000402735.1" ; hgnc_id "HGNC:6181" ; level 2 ; orig_coord_info "chr12,26832690,26832781,-" ; protein_id "ENSP00000242737.5" ; tag basic ; transcript_id "DST--ITPR2^ENST00000242737.5" ; transcript_name "ITPR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DST--ITPR2 HAVANA gene 22073 129360 . + . FI_gene_label "DST^ENSG00000151914.21" ; ID "DST--ITPR2^DST^ENSG00000151914.21" ; ccdsid "CCDS47443.1" ; exon_id "ENSE00002133064.1" ; exon_number 1 ; gene_id "DST--ITPR2^DST^ENSG00000151914.21" ; gene_name DST ; gene_type protein_coding ; havana_gene "OTTHUMG00000014913.26" ; havana_transcript "OTTHUMT00000041022.4" ; hgnc_id "HGNC:1090" ; level 2 ; orig_coord_info "chr6,56642622,56642788,-" ; protein_id "ENSP00000244364.6" ; tag basic CCDS ; transcript_id "DST--ITPR2^ENST00000244364.10" ; transcript_name "DST-201" ; transcript_support_level 1 ; transcript_type protein_coding
DST--ITPR2 HAVANA mRNA 22073 129360 . + . FI_gene_label "DST^ENSG00000151914.21" ; ID "DST--ITPR2^ENST00000244364.10" ; Parent "DST--ITPR2^DST^ENSG00000151914.21" ; ccdsid "CCDS47443.1" ; exon_id "ENSE00002133064.1" ; exon_number 1 ; gene_id "DST--ITPR2^DST^ENSG00000151914.21" ; gene_name DST ; gene_type protein_coding ; havana_gene "OTTHUMG00000014913.26" ; havana_transcript "OTTHUMT00000041022.4" ; hgnc_id "HGNC:1090" ; level 2 ; orig_coord_info "chr6,56642622,56642788,-" ; protein_id "ENSP00000244364.6" ; tag basic CCDS ; transcript_id "DST--ITPR2^ENST00000244364.10" ; transcript_name "DST-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ENAH--AL136379.1 HAVANA gene 1427 8601 . + . FI_gene_label "ENAH^ENSG00000154380.17" ; ID "ENAH--AL136379.1^ENAH^ENSG00000154380.17" ; exon_id "ENSE00001743936.1" ; exon_number 1 ; gene_id "ENAH--AL136379.1^ENAH^ENSG00000154380.17" ; gene_name ENAH ; gene_type protein_coding ; havana_gene "OTTHUMG00000037742.10" ; havana_transcript "OTTHUMT00000092061.3" ; hgnc_id "HGNC:18271" ; level 1 ; orig_coord_info "chr1,225652686,225652690,-" ; protein_id "ENSP00000284563.7" ; tag mRNA_end_NF cds_end_NF not_organism_supported exp_conf ; transcript_id "ENAH--AL136379.1^ENST00000284563.7" ; transcript_name "ENAH-201" ; transcript_support_level 5 ; transcript_type protein_coding
ENAH--AL136379.1 HAVANA mRNA 1427 8601 . + . FI_gene_label "ENAH^ENSG00000154380.17" ; ID "ENAH--AL136379.1^ENST00000284563.7" ; Parent "ENAH--AL136379.1^ENAH^ENSG00000154380.17" ; exon_id "ENSE00001743936.1" ; exon_number 1 ; gene_id "ENAH--AL136379.1^ENAH^ENSG00000154380.17" ; gene_name ENAH ; gene_type protein_coding ; havana_gene "OTTHUMG00000037742.10" ; havana_transcript "OTTHUMT00000092061.3" ; hgnc_id "HGNC:18271" ; level 1 ; orig_coord_info "chr1,225652686,225652690,-" ; protein_id "ENSP00000284563.7" ; tag mRNA_end_NF cds_end_NF not_organism_supported exp_conf ; transcript_id "ENAH--AL136379.1^ENST00000284563.7" ; transcript_name "ENAH-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ENOX2--PGBD2 HAVANA gene 24363 29203 . + . FI_gene_label "PGBD2^ENSG00000185220.12" ; ID "ENOX2--PGBD2^PGBD2^ENSG00000185220.12" ; ccdsid "CCDS31128.1" ; exon_id "ENSE00003610993.1" ; exon_number 2 ; gene_id "ENOX2--PGBD2^PGBD2^ENSG00000185220.12" ; gene_name PGBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040424.2" ; havana_transcript "OTTHUMT00000097318.2" ; hgnc_id "HGNC:19399" ; level 2 ; orig_coord_info "chr1,248913863,248913879,+" ; protein_id "ENSP00000331643.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ENOX2--PGBD2^ENST00000329291.6" ; transcript_name "PGBD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ENOX2--PGBD2 HAVANA mRNA 24363 29203 . + . FI_gene_label "PGBD2^ENSG00000185220.12" ; ID "ENOX2--PGBD2^ENST00000329291.6" ; Parent "ENOX2--PGBD2^PGBD2^ENSG00000185220.12" ; ccdsid "CCDS31128.1" ; exon_id "ENSE00003610993.1" ; exon_number 2 ; gene_id "ENOX2--PGBD2^PGBD2^ENSG00000185220.12" ; gene_name PGBD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040424.2" ; havana_transcript "OTTHUMT00000097318.2" ; hgnc_id "HGNC:19399" ; level 2 ; orig_coord_info "chr1,248913863,248913879,+" ; protein_id "ENSP00000331643.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ENOX2--PGBD2^ENST00000329291.6" ; transcript_name "PGBD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ENOX2--PGBD2 HAVANA gene 1001 20263 . + . FI_gene_label "ENOX2^ENSG00000165675.17" ; ID "ENOX2--PGBD2^ENOX2^ENSG00000165675.17" ; ccdsid "CCDS14626.1" ; exon_id "ENSE00003640935.1" ; exon_number 4 ; gene_id "ENOX2--PGBD2^ENOX2^ENSG00000165675.17" ; gene_name ENOX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022401.2" ; hgnc_id "HGNC:2259" ; level 2 ; orig_coord_info "chrX,130709243,130709291,-" ; protein_id "ENSP00000337146.3" ; tag basic CCDS ; transcript_id "ENOX2--PGBD2^ENST00000338144.7" ; transcript_name "ENOX2-201" ; transcript_support_level 2 ; transcript_type protein_coding
ENOX2--PGBD2 HAVANA mRNA 1001 20263 . + . FI_gene_label "ENOX2^ENSG00000165675.17" ; ID "ENOX2--PGBD2^ENST00000338144.7" ; Parent "ENOX2--PGBD2^ENOX2^ENSG00000165675.17" ; ccdsid "CCDS14626.1" ; exon_id "ENSE00003640935.1" ; exon_number 4 ; gene_id "ENOX2--PGBD2^ENOX2^ENSG00000165675.17" ; gene_name ENOX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022401.2" ; hgnc_id "HGNC:2259" ; level 2 ; orig_coord_info "chrX,130709243,130709291,-" ; protein_id "ENSP00000337146.3" ; tag basic CCDS ; transcript_id "ENOX2--PGBD2^ENST00000338144.7" ; transcript_name "ENOX2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
FXR1--SOX2-OT HAVANA gene 2697 24090 . + . FI_gene_label "FXR1^ENSG00000114416.18" ; ID "FXR1--SOX2-OT^FXR1^ENSG00000114416.18" ; ccdsid "CCDS33894.1" ; exon_id "ENSE00003575231.1" ; exon_number 5 ; gene_id "FXR1--SOX2-OT^FXR1^ENSG00000114416.18" ; gene_name FXR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158138.7" ; havana_transcript "OTTHUMT00000350271.1" ; hgnc_id "HGNC:4023" ; level 2 ; orig_coord_info "chr3,180947922,180947936,+" ; protein_id "ENSP00000307633.7" ; tag basic CCDS ; transcript_id "FXR1--SOX2-OT^ENST00000305586.11" ; transcript_name "FXR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
FXR1--SOX2-OT HAVANA mRNA 2697 24090 . + . FI_gene_label "FXR1^ENSG00000114416.18" ; ID "FXR1--SOX2-OT^ENST00000305586.11" ; Parent "FXR1--SOX2-OT^FXR1^ENSG00000114416.18" ; ccdsid "CCDS33894.1" ; exon_id "ENSE00003575231.1" ; exon_number 5 ; gene_id "FXR1--SOX2-OT^FXR1^ENSG00000114416.18" ; gene_name FXR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158138.7" ; havana_transcript "OTTHUMT00000350271.1" ; hgnc_id "HGNC:4023" ; level 2 ; orig_coord_info "chr3,180947922,180947936,+" ; protein_id "ENSP00000307633.7" ; tag basic CCDS ; transcript_id "FXR1--SOX2-OT^ENST00000305586.11" ; transcript_name "FXR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GDA--CD24 ENSEMBL gene 2240 24983 . + . FI_gene_label "GDA^ENSG00000119125.17" ; ID "GDA--CD24^GDA^ENSG00000119125.17" ; ccdsid "CCDS56576.1" ; exon_id "ENSE00002176037.2" ; exon_number 1 ; gene_id "GDA--CD24^GDA^ENSG00000119125.17" ; gene_name GDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000020005.4" ; hgnc_id "HGNC:4212" ; level 3 ; orig_coord_info "chr9,72149560,72149682,+" ; protein_id "ENSP00000238018.4" ; tag basic CCDS ; transcript_id "GDA--CD24^ENST00000238018.8" ; transcript_name "GDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
GDA--CD24 ENSEMBL mRNA 2240 24983 . + . FI_gene_label "GDA^ENSG00000119125.17" ; ID "GDA--CD24^ENST00000238018.8" ; Parent "GDA--CD24^GDA^ENSG00000119125.17" ; ccdsid "CCDS56576.1" ; exon_id "ENSE00002176037.2" ; exon_number 1 ; gene_id "GDA--CD24^GDA^ENSG00000119125.17" ; gene_name GDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000020005.4" ; hgnc_id "HGNC:4212" ; level 3 ; orig_coord_info "chr9,72149560,72149682,+" ; protein_id "ENSP00000238018.4" ; tag basic CCDS ; transcript_id "GDA--CD24^ENST00000238018.8" ; transcript_name "GDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GDA--CD24 HAVANA gene 31408 35754 . + . FI_gene_label "CD24^ENSG00000272398.6" ; ID "GDA--CD24^CD24^ENSG00000272398.6" ; ccdsid "CCDS75499.1" ; exon_id "ENSE00003696480.2" ; exon_number 1 ; gene_id "GDA--CD24^CD24^ENSG00000272398.6" ; gene_name CD24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188439.3" ; havana_transcript "OTTHUMT00000504375.2" ; hgnc_id "HGNC:1645" ; level 2 ; orig_coord_info "chr6,106974578,106974646,-" ; protein_id "ENSP00000475625.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GDA--CD24^ENST00000606017.2" ; transcript_name "CD24-201" ; transcript_support_level 1 ; transcript_type protein_coding
GDA--CD24 HAVANA mRNA 31408 35754 . + . FI_gene_label "CD24^ENSG00000272398.6" ; ID "GDA--CD24^ENST00000606017.2" ; Parent "GDA--CD24^CD24^ENSG00000272398.6" ; ccdsid "CCDS75499.1" ; exon_id "ENSE00003696480.2" ; exon_number 1 ; gene_id "GDA--CD24^CD24^ENSG00000272398.6" ; gene_name CD24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188439.3" ; havana_transcript "OTTHUMT00000504375.2" ; hgnc_id "HGNC:1645" ; level 2 ; orig_coord_info "chr6,106974578,106974646,-" ; protein_id "ENSP00000475625.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GDA--CD24^ENST00000606017.2" ; transcript_name "CD24-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GNG4--B3GALNT2 HAVANA gene 13989 25866 . + . FI_gene_label "B3GALNT2^ENSG00000162885.14" ; ID "GNG4--B3GALNT2^B3GALNT2^ENSG00000162885.14" ; ccdsid "CCDS60453.1" ; exon_id "ENSE00001121490.4" ; exon_number 1 ; gene_id "GNG4--B3GALNT2^B3GALNT2^ENSG00000162885.14" ; gene_name B3GALNT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040468.6" ; havana_transcript "OTTHUMT00000097377.2" ; hgnc_id "HGNC:28596" ; level 2 ; orig_coord_info "chr1,235504141,235504252,-" ; protein_id "ENSP00000315678.3" ; tag basic CCDS ; transcript_id "GNG4--B3GALNT2^ENST00000313984.3" ; transcript_name "B3GALNT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNG4--B3GALNT2 HAVANA mRNA 13989 25866 . + . FI_gene_label "B3GALNT2^ENSG00000162885.14" ; ID "GNG4--B3GALNT2^ENST00000313984.3" ; Parent "GNG4--B3GALNT2^B3GALNT2^ENSG00000162885.14" ; ccdsid "CCDS60453.1" ; exon_id "ENSE00001121490.4" ; exon_number 1 ; gene_id "GNG4--B3GALNT2^B3GALNT2^ENSG00000162885.14" ; gene_name B3GALNT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040468.6" ; havana_transcript "OTTHUMT00000097377.2" ; hgnc_id "HGNC:28596" ; level 2 ; orig_coord_info "chr1,235504141,235504252,-" ; protein_id "ENSP00000315678.3" ; tag basic CCDS ; transcript_id "GNG4--B3GALNT2^ENST00000313984.3" ; transcript_name "B3GALNT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GNG4--B3GALNT2 HAVANA gene 3126 7811 . + . FI_gene_label "GNG4^ENSG00000168243.11" ; ID "GNG4--B3GALNT2^GNG4^ENSG00000168243.11" ; ccdsid "CCDS1607.1" ; exon_id "ENSE00003892798.1" ; exon_number 2 ; gene_id "GNG4--B3GALNT2^GNG4^ENSG00000168243.11" ; gene_name GNG4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040740.4" ; havana_transcript "OTTHUMT00000097907.1" ; hgnc_id "HGNC:4407" ; level 2 ; orig_coord_info "chr1,235583740,235583838,-" ; protein_id "ENSP00000355556.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "GNG4--B3GALNT2^ENST00000366597.5" ; transcript_name "GNG4-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNG4--B3GALNT2 HAVANA mRNA 3126 7811 . + . FI_gene_label "GNG4^ENSG00000168243.11" ; ID "GNG4--B3GALNT2^ENST00000366597.5" ; Parent "GNG4--B3GALNT2^GNG4^ENSG00000168243.11" ; ccdsid "CCDS1607.1" ; exon_id "ENSE00003892798.1" ; exon_number 2 ; gene_id "GNG4--B3GALNT2^GNG4^ENSG00000168243.11" ; gene_name GNG4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040740.4" ; havana_transcript "OTTHUMT00000097907.1" ; hgnc_id "HGNC:4407" ; level 2 ; orig_coord_info "chr1,235583740,235583838,-" ; protein_id "ENSP00000355556.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "GNG4--B3GALNT2^ENST00000366597.5" ; transcript_name "GNG4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IST1--DAB2IP ENSEMBL gene 24678 54145 . + . FI_gene_label "DAB2IP^ENSG00000136848.17" ; ID "IST1--DAB2IP^DAB2IP^ENSG00000136848.17" ; ccdsid "CCDS6833.2" ; exon_id "ENSE00002315537.2" ; exon_number 1 ; gene_id "IST1--DAB2IP^DAB2IP^ENSG00000136848.17" ; gene_name DAB2IP ; gene_type protein_coding ; havana_gene "OTTHUMG00000020595.5" ; hgnc_id "HGNC:17294" ; level 3 ; orig_coord_info "chr9,121567189,121567228,+" ; protein_id "ENSP00000259371.2" ; tag basic CCDS ; transcript_id "IST1--DAB2IP^ENST00000259371.6" ; transcript_name "DAB2IP-201" ; transcript_support_level 5 ; transcript_type protein_coding
IST1--DAB2IP ENSEMBL mRNA 24678 54145 . + . FI_gene_label "DAB2IP^ENSG00000136848.17" ; ID "IST1--DAB2IP^ENST00000259371.6" ; Parent "IST1--DAB2IP^DAB2IP^ENSG00000136848.17" ; ccdsid "CCDS6833.2" ; exon_id "ENSE00002315537.2" ; exon_number 1 ; gene_id "IST1--DAB2IP^DAB2IP^ENSG00000136848.17" ; gene_name DAB2IP ; gene_type protein_coding ; havana_gene "OTTHUMG00000020595.5" ; hgnc_id "HGNC:17294" ; level 3 ; orig_coord_info "chr9,121567189,121567228,+" ; protein_id "ENSP00000259371.2" ; tag basic CCDS ; transcript_id "IST1--DAB2IP^ENST00000259371.6" ; transcript_name "DAB2IP-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
IST1--DAB2IP HAVANA gene 7849 19443 . + . FI_gene_label "IST1^ENSG00000182149.21" ; ID "IST1--DAB2IP^IST1^ENSG00000182149.21" ; ccdsid "CCDS10905.1" ; exon_id "ENSE00003710128.1" ; exon_number 2 ; gene_id "IST1--DAB2IP^IST1^ENSG00000182149.21" ; gene_name IST1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137597.9" ; havana_transcript "OTTHUMT00000269006.1" ; hgnc_id "HGNC:28977" ; level 2 ; orig_coord_info "chr16,71915641,71915728,+" ; protein_id "ENSP00000330408.8" ; tag basic CCDS ; transcript_id "IST1--DAB2IP^ENST00000329908.12" ; transcript_name "IST1-201" ; transcript_support_level 1 ; transcript_type protein_coding
IST1--DAB2IP HAVANA mRNA 7849 19443 . + . FI_gene_label "IST1^ENSG00000182149.21" ; ID "IST1--DAB2IP^ENST00000329908.12" ; Parent "IST1--DAB2IP^IST1^ENSG00000182149.21" ; ccdsid "CCDS10905.1" ; exon_id "ENSE00003710128.1" ; exon_number 2 ; gene_id "IST1--DAB2IP^IST1^ENSG00000182149.21" ; gene_name IST1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137597.9" ; havana_transcript "OTTHUMT00000269006.1" ; hgnc_id "HGNC:28977" ; level 2 ; orig_coord_info "chr16,71915641,71915728,+" ; protein_id "ENSP00000330408.8" ; tag basic CCDS ; transcript_id "IST1--DAB2IP^ENST00000329908.12" ; transcript_name "IST1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KAZN--CTRC HAVANA gene 6737 22343 . + . FI_gene_label "KAZN^ENSG00000189337.17" ; ID "KAZN--CTRC^KAZN^ENSG00000189337.17" ; ccdsid "CCDS30604.1" ; exon_id "ENSE00001836841.1" ; exon_number 1 ; gene_id "KAZN--CTRC^KAZN^ENSG00000189337.17" ; gene_name KAZN ; gene_type protein_coding ; havana_gene "OTTHUMG00000002042.8" ; havana_transcript "OTTHUMT00000005692.2" ; hgnc_id "HGNC:29173" ; level 2 ; orig_coord_info "chr1,14924365,14924572,+" ; protein_id "ENSP00000354727.5" ; tag basic CCDS ; transcript_id "KAZN--CTRC^ENST00000361144.9" ; transcript_name "KAZN-201" ; transcript_support_level 1 ; transcript_type protein_coding
KAZN--CTRC HAVANA mRNA 6737 22343 . + . FI_gene_label "KAZN^ENSG00000189337.17" ; ID "KAZN--CTRC^ENST00000361144.9" ; Parent "KAZN--CTRC^KAZN^ENSG00000189337.17" ; ccdsid "CCDS30604.1" ; exon_id "ENSE00001836841.1" ; exon_number 1 ; gene_id "KAZN--CTRC^KAZN^ENSG00000189337.17" ; gene_name KAZN ; gene_type protein_coding ; havana_gene "OTTHUMG00000002042.8" ; havana_transcript "OTTHUMT00000005692.2" ; hgnc_id "HGNC:29173" ; level 2 ; orig_coord_info "chr1,14924365,14924572,+" ; protein_id "ENSP00000354727.5" ; tag basic CCDS ; transcript_id "KAZN--CTRC^ENST00000361144.9" ; transcript_name "KAZN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KAZN--CTRC ENSEMBL gene 35852 44951 . + . FI_gene_label "CTRC^ENSG00000162438.12" ; ID "KAZN--CTRC^CTRC^ENSG00000162438.12" ; exon_id "ENSE00001468910.1" ; exon_number 1 ; gene_id "KAZN--CTRC^CTRC^ENSG00000162438.12" ; gene_name CTRC ; gene_type protein_coding ; havana_gene "OTTHUMG00000002255.2" ; hgnc_id "HGNC:2523" ; level 3 ; orig_coord_info "chr1,15438465,15438504,+" ; protein_id "ENSP00000365110.2" ; tag basic ; transcript_id "KAZN--CTRC^ENST00000375943.6" ; transcript_name "CTRC-201" ; transcript_support_level 1 ; transcript_type protein_coding
KAZN--CTRC ENSEMBL mRNA 35852 44951 . + . FI_gene_label "CTRC^ENSG00000162438.12" ; ID "KAZN--CTRC^ENST00000375943.6" ; Parent "KAZN--CTRC^CTRC^ENSG00000162438.12" ; exon_id "ENSE00001468910.1" ; exon_number 1 ; gene_id "KAZN--CTRC^CTRC^ENSG00000162438.12" ; gene_name CTRC ; gene_type protein_coding ; havana_gene "OTTHUMG00000002255.2" ; hgnc_id "HGNC:2523" ; level 3 ; orig_coord_info "chr1,15438465,15438504,+" ; protein_id "ENSP00000365110.2" ; tag basic ; transcript_id "KAZN--CTRC^ENST00000375943.6" ; transcript_name "CTRC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LHFPL5--CLPSL1 HAVANA gene 3397 10913 . + . FI_gene_label "LHFPL5^ENSG00000197753.11" ; ID "LHFPL5--CLPSL1^LHFPL5^ENSG00000197753.11" ; ccdsid "CCDS4812.1" ; exon_id "ENSE00003831190.2" ; exon_number 1 ; gene_id "LHFPL5--CLPSL1^LHFPL5^ENSG00000197753.11" ; gene_name LHFPL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014584.6" ; havana_transcript "OTTHUMT00000040323.4" ; hgnc_id "HGNC:21253" ; level 2 ; orig_coord_info "chr6,35805671,35806082,+" ; protein_id "ENSP00000353346.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LHFPL5--CLPSL1^ENST00000360215.3" ; transcript_name "LHFPL5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LHFPL5--CLPSL1 HAVANA mRNA 3397 10913 . + . FI_gene_label "LHFPL5^ENSG00000197753.11" ; ID "LHFPL5--CLPSL1^ENST00000360215.3" ; Parent "LHFPL5--CLPSL1^LHFPL5^ENSG00000197753.11" ; ccdsid "CCDS4812.1" ; exon_id "ENSE00003831190.2" ; exon_number 1 ; gene_id "LHFPL5--CLPSL1^LHFPL5^ENSG00000197753.11" ; gene_name LHFPL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014584.6" ; havana_transcript "OTTHUMT00000040323.4" ; hgnc_id "HGNC:21253" ; level 2 ; orig_coord_info "chr6,35805671,35806082,+" ; protein_id "ENSP00000353346.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LHFPL5--CLPSL1^ENST00000360215.3" ; transcript_name "LHFPL5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LHFPL5--CLPSL1 HAVANA gene 20636 22979 . + . FI_gene_label "CLPSL1^ENSG00000204140.10" ; ID "LHFPL5--CLPSL1^CLPSL1^ENSG00000204140.10" ; ccdsid "CCDS43456.1" ; exon_id "ENSE00001569343.4" ; exon_number 1 ; gene_id "LHFPL5--CLPSL1^CLPSL1^ENSG00000204140.10" ; gene_name CLPSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014582.3" ; havana_transcript "OTTHUMT00000040317.3" ; hgnc_id "HGNC:21251" ; level 2 ; orig_coord_info "chr6,35781111,35781209,+" ; protein_id "ENSP00000362968.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LHFPL5--CLPSL1^ENST00000373861.6" ; transcript_name "CLPSL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LHFPL5--CLPSL1 HAVANA mRNA 20636 22979 . + . FI_gene_label "CLPSL1^ENSG00000204140.10" ; ID "LHFPL5--CLPSL1^ENST00000373861.6" ; Parent "LHFPL5--CLPSL1^CLPSL1^ENSG00000204140.10" ; ccdsid "CCDS43456.1" ; exon_id "ENSE00001569343.4" ; exon_number 1 ; gene_id "LHFPL5--CLPSL1^CLPSL1^ENSG00000204140.10" ; gene_name CLPSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014582.3" ; havana_transcript "OTTHUMT00000040317.3" ; hgnc_id "HGNC:21251" ; level 2 ; orig_coord_info "chr6,35781111,35781209,+" ; protein_id "ENSP00000362968.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LHFPL5--CLPSL1^ENST00000373861.6" ; transcript_name "CLPSL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LIMK2--ZNRF3 HAVANA gene 1060 20308 . + . FI_gene_label "LIMK2^ENSG00000182541.18" ; ID "LIMK2--ZNRF3^LIMK2^ENSG00000182541.18" ; ccdsid "CCDS13891.1" ; exon_id "ENSE00001951544.2" ; exon_number 1 ; gene_id "LIMK2--ZNRF3^LIMK2^ENSG00000182541.18" ; gene_name LIMK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151251.3" ; havana_transcript "OTTHUMT00000321911.2" ; hgnc_id "HGNC:6614" ; level 2 ; orig_coord_info "chr22,31212409,31212424,+" ; protein_id "ENSP00000332687.4" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "LIMK2--ZNRF3^ENST00000331728.9" ; transcript_name "LIMK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LIMK2--ZNRF3 HAVANA mRNA 1060 20308 . + . FI_gene_label "LIMK2^ENSG00000182541.18" ; ID "LIMK2--ZNRF3^ENST00000331728.9" ; Parent "LIMK2--ZNRF3^LIMK2^ENSG00000182541.18" ; ccdsid "CCDS13891.1" ; exon_id "ENSE00001951544.2" ; exon_number 1 ; gene_id "LIMK2--ZNRF3^LIMK2^ENSG00000182541.18" ; gene_name LIMK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151251.3" ; havana_transcript "OTTHUMT00000321911.2" ; hgnc_id "HGNC:6614" ; level 2 ; orig_coord_info "chr22,31212409,31212424,+" ; protein_id "ENSP00000332687.4" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "LIMK2--ZNRF3^ENST00000331728.9" ; transcript_name "LIMK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LIMK2--ZNRF3 HAVANA gene 24804 34928 . + . FI_gene_label "ZNRF3^ENSG00000183579.16" ; ID "LIMK2--ZNRF3^ZNRF3^ENSG00000183579.16" ; ccdsid "CCDS42999.1" ; exon_id "ENSE00003547707.1" ; exon_number 2 ; gene_id "LIMK2--ZNRF3^ZNRF3^ENSG00000183579.16" ; gene_name ZNRF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151009.3" ; havana_transcript "OTTHUMT00000320944.1" ; hgnc_id "HGNC:18126" ; level 2 ; orig_coord_info "chr22,28987076,28987201,+" ; protein_id "ENSP00000384456.1" ; tag alternative_5_UTR basic CCDS ; transcript_id "LIMK2--ZNRF3^ENST00000402174.5" ; transcript_name "ZNRF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
LIMK2--ZNRF3 HAVANA mRNA 24804 34928 . + . FI_gene_label "ZNRF3^ENSG00000183579.16" ; ID "LIMK2--ZNRF3^ENST00000402174.5" ; Parent "LIMK2--ZNRF3^ZNRF3^ENSG00000183579.16" ; ccdsid "CCDS42999.1" ; exon_id "ENSE00003547707.1" ; exon_number 2 ; gene_id "LIMK2--ZNRF3^ZNRF3^ENSG00000183579.16" ; gene_name ZNRF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151009.3" ; havana_transcript "OTTHUMT00000320944.1" ; hgnc_id "HGNC:18126" ; level 2 ; orig_coord_info "chr22,28987076,28987201,+" ; protein_id "ENSP00000384456.1" ; tag alternative_5_UTR basic CCDS ; transcript_id "LIMK2--ZNRF3^ENST00000402174.5" ; transcript_name "ZNRF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
LSM14B--OSBPL2 HAVANA gene 1015 11585 . + . FI_gene_label "LSM14B^ENSG00000149657.20" ; ID "LSM14B--OSBPL2^LSM14B^ENSG00000149657.20" ; ccdsid "CCDS46626.1" ; exon_id "ENSE00001813884.2" ; exon_number 1 ; gene_id "LSM14B--OSBPL2^LSM14B^ENSG00000149657.20" ; gene_name LSM14B ; gene_type protein_coding ; havana_gene "OTTHUMG00000032901.8" ; havana_transcript "OTTHUMT00000079996.5" ; hgnc_id "HGNC:15887" ; level 2 ; orig_coord_info "chr20,62122667,62122793,+" ; protein_id "ENSP00000279068.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM14B--OSBPL2^ENST00000279068.11" ; transcript_name "LSM14B-201" ; transcript_support_level 5 ; transcript_type protein_coding
LSM14B--OSBPL2 HAVANA mRNA 1015 11585 . + . FI_gene_label "LSM14B^ENSG00000149657.20" ; ID "LSM14B--OSBPL2^ENST00000279068.11" ; Parent "LSM14B--OSBPL2^LSM14B^ENSG00000149657.20" ; ccdsid "CCDS46626.1" ; exon_id "ENSE00001813884.2" ; exon_number 1 ; gene_id "LSM14B--OSBPL2^LSM14B^ENSG00000149657.20" ; gene_name LSM14B ; gene_type protein_coding ; havana_gene "OTTHUMG00000032901.8" ; havana_transcript "OTTHUMT00000079996.5" ; hgnc_id "HGNC:15887" ; level 2 ; orig_coord_info "chr20,62122667,62122793,+" ; protein_id "ENSP00000279068.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM14B--OSBPL2^ENST00000279068.11" ; transcript_name "LSM14B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LSM14B--OSBPL2 HAVANA gene 20704 46213 . + . FI_gene_label "OSBPL2^ENSG00000130703.17" ; ID "LSM14B--OSBPL2^OSBPL2^ENSG00000130703.17" ; ccdsid "CCDS13495.1" ; exon_id "ENSE00003493699.1" ; exon_number 2 ; gene_id "LSM14B--OSBPL2^OSBPL2^ENSG00000130703.17" ; gene_name OSBPL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032909.15" ; havana_transcript "OTTHUMT00000080021.3" ; hgnc_id "HGNC:15761" ; level 2 ; orig_coord_info "chr20,62256185,62256221,+" ; protein_id "ENSP00000316649.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "LSM14B--OSBPL2^ENST00000313733.9" ; transcript_name "OSBPL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LSM14B--OSBPL2 HAVANA mRNA 20704 46213 . + . FI_gene_label "OSBPL2^ENSG00000130703.17" ; ID "LSM14B--OSBPL2^ENST00000313733.9" ; Parent "LSM14B--OSBPL2^OSBPL2^ENSG00000130703.17" ; ccdsid "CCDS13495.1" ; exon_id "ENSE00003493699.1" ; exon_number 2 ; gene_id "LSM14B--OSBPL2^OSBPL2^ENSG00000130703.17" ; gene_name OSBPL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032909.15" ; havana_transcript "OTTHUMT00000080021.3" ; hgnc_id "HGNC:15761" ; level 2 ; orig_coord_info "chr20,62256185,62256221,+" ; protein_id "ENSP00000316649.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "LSM14B--OSBPL2^ENST00000313733.9" ; transcript_name "OSBPL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NACC2--CAMSAP1 HAVANA gene 1001 13783 . + . FI_gene_label "NACC2^ENSG00000148411.8" ; ID "NACC2--CAMSAP1^NACC2^ENSG00000148411.8" ; ccdsid "CCDS6993.1" ; exon_id "ENSE00003893876.1" ; exon_number 2 ; gene_id "NACC2--CAMSAP1^NACC2^ENSG00000148411.8" ; gene_name NACC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020921.3" ; havana_transcript "OTTHUMT00000504203.2" ; hgnc_id "HGNC:23846" ; level 2 ; orig_coord_info "chr9,136049636,136050521,-" ; protein_id "ENSP00000277554.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NACC2--CAMSAP1^ENST00000277554.4" ; transcript_name "NACC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NACC2--CAMSAP1 HAVANA mRNA 1001 13783 . + . FI_gene_label "NACC2^ENSG00000148411.8" ; ID "NACC2--CAMSAP1^ENST00000277554.4" ; Parent "NACC2--CAMSAP1^NACC2^ENSG00000148411.8" ; ccdsid "CCDS6993.1" ; exon_id "ENSE00003893876.1" ; exon_number 2 ; gene_id "NACC2--CAMSAP1^NACC2^ENSG00000148411.8" ; gene_name NACC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020921.3" ; havana_transcript "OTTHUMT00000504203.2" ; hgnc_id "HGNC:23846" ; level 2 ; orig_coord_info "chr9,136049636,136050521,-" ; protein_id "ENSP00000277554.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NACC2--CAMSAP1^ENST00000277554.4" ; transcript_name "NACC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NACC2--CAMSAP1 HAVANA gene 18512 39578 . + . FI_gene_label "CAMSAP1^ENSG00000130559.19" ; ID "NACC2--CAMSAP1^CAMSAP1^ENSG00000130559.19" ; exon_id "ENSE00003654159.1" ; exon_number 4 ; gene_id "NACC2--CAMSAP1^CAMSAP1^ENSG00000130559.19" ; gene_name CAMSAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020918.5" ; havana_transcript "OTTHUMT00000327125.1" ; hgnc_id "HGNC:19946" ; level 2 ; orig_coord_info "chr9,135850322,135850435,-" ; protein_id "ENSP00000312463.6" ; tag basic ; transcript_id "NACC2--CAMSAP1^ENST00000312405.10" ; transcript_name "CAMSAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NACC2--CAMSAP1 HAVANA mRNA 18512 39578 . + . FI_gene_label "CAMSAP1^ENSG00000130559.19" ; ID "NACC2--CAMSAP1^ENST00000312405.10" ; Parent "NACC2--CAMSAP1^CAMSAP1^ENSG00000130559.19" ; exon_id "ENSE00003654159.1" ; exon_number 4 ; gene_id "NACC2--CAMSAP1^CAMSAP1^ENSG00000130559.19" ; gene_name CAMSAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020918.5" ; havana_transcript "OTTHUMT00000327125.1" ; hgnc_id "HGNC:19946" ; level 2 ; orig_coord_info "chr9,135850322,135850435,-" ; protein_id "ENSP00000312463.6" ; tag basic ; transcript_id "NACC2--CAMSAP1^ENST00000312405.10" ; transcript_name "CAMSAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NBPF10--AC243829.3 HAVANA gene 6228 81021 . + . FI_gene_label "NBPF10^ENSG00000271425.9" ; ID "NBPF10--AC243829.3^NBPF10^ENSG00000271425.9" ; ccdsid "CCDS76206.1" ; exon_id "ENSE00003847712.1" ; exon_number 1 ; gene_id "NBPF10--AC243829.3^NBPF10^ENSG00000271425.9" ; gene_name NBPF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013757.25" ; havana_transcript "OTTHUMT00000038550.7" ; hgnc_id "HGNC:31992" ; level 2 ; orig_coord_info "chr1,146144595,146144769,-" ; protein_id "ENSP00000463957.6" ; tag non_canonical_TEC inferred_exon_combination basic appris_principal_1 CCDS ; transcript_id "NBPF10--AC243829.3^ENST00000583866.9" ; transcript_name "NBPF10-201" ; transcript_support_level 5 ; transcript_type protein_coding
NBPF10--AC243829.3 HAVANA mRNA 6228 81021 . + . FI_gene_label "NBPF10^ENSG00000271425.9" ; ID "NBPF10--AC243829.3^ENST00000583866.9" ; Parent "NBPF10--AC243829.3^NBPF10^ENSG00000271425.9" ; ccdsid "CCDS76206.1" ; exon_id "ENSE00003847712.1" ; exon_number 1 ; gene_id "NBPF10--AC243829.3^NBPF10^ENSG00000271425.9" ; gene_name NBPF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013757.25" ; havana_transcript "OTTHUMT00000038550.7" ; hgnc_id "HGNC:31992" ; level 2 ; orig_coord_info "chr1,146144595,146144769,-" ; protein_id "ENSP00000463957.6" ; tag non_canonical_TEC inferred_exon_combination basic appris_principal_1 CCDS ; transcript_id "NBPF10--AC243829.3^ENST00000583866.9" ; transcript_name "NBPF10-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NBPF10--NOTCH2NLA HAVANA gene 84022 89145 . + . FI_gene_label "NOTCH2NLA^ENSG00000264343.6" ; ID "NBPF10--NOTCH2NLA^NOTCH2NLA^ENSG00000264343.6" ; ccdsid "CCDS72880.1" ; exon_id "ENSE00003568476.1" ; exon_number 2 ; gene_id "NBPF10--NOTCH2NLA^NOTCH2NLA^ENSG00000264343.6" ; gene_name NOTCH2NLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000013754.5" ; havana_transcript "OTTHUMT00000038545.3" ; hgnc_id "HGNC:31862" ; level 2 ; orig_coord_info "chr1,146189300,146189337,-" ; protein_id "ENSP00000354929.6" ; tag basic appris_principal_4 CCDS ; transcript_id "NBPF10--NOTCH2NLA^ENST00000362074.7" ; transcript_name "NOTCH2NLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
NBPF10--NOTCH2NLA HAVANA mRNA 84022 89145 . + . FI_gene_label "NOTCH2NLA^ENSG00000264343.6" ; ID "NBPF10--NOTCH2NLA^ENST00000362074.7" ; Parent "NBPF10--NOTCH2NLA^NOTCH2NLA^ENSG00000264343.6" ; ccdsid "CCDS72880.1" ; exon_id "ENSE00003568476.1" ; exon_number 2 ; gene_id "NBPF10--NOTCH2NLA^NOTCH2NLA^ENSG00000264343.6" ; gene_name NOTCH2NLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000013754.5" ; havana_transcript "OTTHUMT00000038545.3" ; hgnc_id "HGNC:31862" ; level 2 ; orig_coord_info "chr1,146189300,146189337,-" ; protein_id "ENSP00000354929.6" ; tag basic appris_principal_4 CCDS ; transcript_id "NBPF10--NOTCH2NLA^ENST00000362074.7" ; transcript_name "NOTCH2NLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NBPF10--NOTCH2NLA HAVANA gene 6228 81021 . + . FI_gene_label "NBPF10^ENSG00000271425.9" ; ID "NBPF10--NOTCH2NLA^NBPF10^ENSG00000271425.9" ; ccdsid "CCDS76206.1" ; exon_id "ENSE00003847712.1" ; exon_number 1 ; gene_id "NBPF10--NOTCH2NLA^NBPF10^ENSG00000271425.9" ; gene_name NBPF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013757.25" ; havana_transcript "OTTHUMT00000038550.7" ; hgnc_id "HGNC:31992" ; level 2 ; orig_coord_info "chr1,146144595,146144769,-" ; protein_id "ENSP00000463957.6" ; tag non_canonical_TEC inferred_exon_combination basic appris_principal_1 CCDS ; transcript_id "NBPF10--NOTCH2NLA^ENST00000583866.9" ; transcript_name "NBPF10-201" ; transcript_support_level 5 ; transcript_type protein_coding
NBPF10--NOTCH2NLA HAVANA mRNA 6228 81021 . + . FI_gene_label "NBPF10^ENSG00000271425.9" ; ID "NBPF10--NOTCH2NLA^ENST00000583866.9" ; Parent "NBPF10--NOTCH2NLA^NBPF10^ENSG00000271425.9" ; ccdsid "CCDS76206.1" ; exon_id "ENSE00003847712.1" ; exon_number 1 ; gene_id "NBPF10--NOTCH2NLA^NBPF10^ENSG00000271425.9" ; gene_name NBPF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013757.25" ; havana_transcript "OTTHUMT00000038550.7" ; hgnc_id "HGNC:31992" ; level 2 ; orig_coord_info "chr1,146144595,146144769,-" ; protein_id "ENSP00000463957.6" ; tag non_canonical_TEC inferred_exon_combination basic appris_principal_1 CCDS ; transcript_id "NBPF10--NOTCH2NLA^ENST00000583866.9" ; transcript_name "NBPF10-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NECAB3--PXMP4 HAVANA gene 16405 20383 . + . FI_gene_label "PXMP4^ENSG00000101417.12" ; ID "NECAB3--PXMP4^PXMP4^ENSG00000101417.12" ; exon_id "ENSE00001925420.1" ; exon_number 1 ; gene_id "NECAB3--PXMP4^PXMP4^ENSG00000101417.12" ; gene_name PXMP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032273.5" ; havana_transcript "OTTHUMT00000334677.1" ; hgnc_id "HGNC:15920" ; level 2 ; orig_coord_info "chr20,33720095,33720207,-" ; protein_id "ENSP00000217398.3" ; tag basic ; transcript_id "NECAB3--PXMP4^ENST00000217398.3" ; transcript_name "PXMP4-201" ; transcript_support_level 2 ; transcript_type protein_coding
NECAB3--PXMP4 HAVANA mRNA 16405 20383 . + . FI_gene_label "PXMP4^ENSG00000101417.12" ; ID "NECAB3--PXMP4^ENST00000217398.3" ; Parent "NECAB3--PXMP4^PXMP4^ENSG00000101417.12" ; exon_id "ENSE00001925420.1" ; exon_number 1 ; gene_id "NECAB3--PXMP4^PXMP4^ENSG00000101417.12" ; gene_name PXMP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032273.5" ; havana_transcript "OTTHUMT00000334677.1" ; hgnc_id "HGNC:15920" ; level 2 ; orig_coord_info "chr20,33720095,33720207,-" ; protein_id "ENSP00000217398.3" ; tag basic ; transcript_id "NECAB3--PXMP4^ENST00000217398.3" ; transcript_name "PXMP4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NECAB3--PXMP4 HAVANA gene 1036 13395 . + . FI_gene_label "NECAB3^ENSG00000125967.17" ; ID "NECAB3--PXMP4^NECAB3^ENSG00000125967.17" ; ccdsid "CCDS42866.1" ; exon_id "ENSE00003903202.1" ; exon_number 1 ; gene_id "NECAB3--PXMP4^NECAB3^ENSG00000125967.17" ; gene_name NECAB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032264.7" ; havana_transcript "OTTHUMT00000078724.2" ; hgnc_id "HGNC:15851" ; level 2 ; orig_coord_info "chr20,33674224,33674352,-" ; protein_id "ENSP00000246190.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NECAB3--PXMP4^ENST00000246190.11" ; transcript_name "NECAB3-201" ; transcript_support_level 5 ; transcript_type protein_coding
NECAB3--PXMP4 HAVANA mRNA 1036 13395 . + . FI_gene_label "NECAB3^ENSG00000125967.17" ; ID "NECAB3--PXMP4^ENST00000246190.11" ; Parent "NECAB3--PXMP4^NECAB3^ENSG00000125967.17" ; ccdsid "CCDS42866.1" ; exon_id "ENSE00003903202.1" ; exon_number 1 ; gene_id "NECAB3--PXMP4^NECAB3^ENSG00000125967.17" ; gene_name NECAB3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032264.7" ; havana_transcript "OTTHUMT00000078724.2" ; hgnc_id "HGNC:15851" ; level 2 ; orig_coord_info "chr20,33674224,33674352,-" ; protein_id "ENSP00000246190.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NECAB3--PXMP4^ENST00000246190.11" ; transcript_name "NECAB3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2NLA--NBPF10 HAVANA gene 1001 6124 . + . FI_gene_label "NOTCH2NLA^ENSG00000264343.6" ; ID "NOTCH2NLA--NBPF10^NOTCH2NLA^ENSG00000264343.6" ; ccdsid "CCDS72880.1" ; exon_id "ENSE00003568476.1" ; exon_number 2 ; gene_id "NOTCH2NLA--NBPF10^NOTCH2NLA^ENSG00000264343.6" ; gene_name NOTCH2NLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000013754.5" ; havana_transcript "OTTHUMT00000038545.3" ; hgnc_id "HGNC:31862" ; level 2 ; orig_coord_info "chr1,146189300,146189337,-" ; protein_id "ENSP00000354929.6" ; tag basic appris_principal_4 CCDS ; transcript_id "NOTCH2NLA--NBPF10^ENST00000362074.7" ; transcript_name "NOTCH2NLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2NLA--NBPF10 HAVANA mRNA 1001 6124 . + . FI_gene_label "NOTCH2NLA^ENSG00000264343.6" ; ID "NOTCH2NLA--NBPF10^ENST00000362074.7" ; Parent "NOTCH2NLA--NBPF10^NOTCH2NLA^ENSG00000264343.6" ; ccdsid "CCDS72880.1" ; exon_id "ENSE00003568476.1" ; exon_number 2 ; gene_id "NOTCH2NLA--NBPF10^NOTCH2NLA^ENSG00000264343.6" ; gene_name NOTCH2NLA ; gene_type protein_coding ; havana_gene "OTTHUMG00000013754.5" ; havana_transcript "OTTHUMT00000038545.3" ; hgnc_id "HGNC:31862" ; level 2 ; orig_coord_info "chr1,146189300,146189337,-" ; protein_id "ENSP00000354929.6" ; tag basic appris_principal_4 CCDS ; transcript_id "NOTCH2NLA--NBPF10^ENST00000362074.7" ; transcript_name "NOTCH2NLA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2NLA--NBPF10 HAVANA gene 16904 91697 . + . FI_gene_label "NBPF10^ENSG00000271425.9" ; ID "NOTCH2NLA--NBPF10^NBPF10^ENSG00000271425.9" ; ccdsid "CCDS76206.1" ; exon_id "ENSE00003847712.1" ; exon_number 1 ; gene_id "NOTCH2NLA--NBPF10^NBPF10^ENSG00000271425.9" ; gene_name NBPF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013757.25" ; havana_transcript "OTTHUMT00000038550.7" ; hgnc_id "HGNC:31992" ; level 2 ; orig_coord_info "chr1,146144595,146144769,-" ; protein_id "ENSP00000463957.6" ; tag non_canonical_TEC inferred_exon_combination basic appris_principal_1 CCDS ; transcript_id "NOTCH2NLA--NBPF10^ENST00000583866.9" ; transcript_name "NBPF10-201" ; transcript_support_level 5 ; transcript_type protein_coding
NOTCH2NLA--NBPF10 HAVANA mRNA 16904 91697 . + . FI_gene_label "NBPF10^ENSG00000271425.9" ; ID "NOTCH2NLA--NBPF10^ENST00000583866.9" ; Parent "NOTCH2NLA--NBPF10^NBPF10^ENSG00000271425.9" ; ccdsid "CCDS76206.1" ; exon_id "ENSE00003847712.1" ; exon_number 1 ; gene_id "NOTCH2NLA--NBPF10^NBPF10^ENSG00000271425.9" ; gene_name NBPF10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000013757.25" ; havana_transcript "OTTHUMT00000038550.7" ; hgnc_id "HGNC:31992" ; level 2 ; orig_coord_info "chr1,146144595,146144769,-" ; protein_id "ENSP00000463957.6" ; tag non_canonical_TEC inferred_exon_combination basic appris_principal_1 CCDS ; transcript_id "NOTCH2NLA--NBPF10^ENST00000583866.9" ; transcript_name "NBPF10-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
OSBPL10--H3P11 HAVANA gene 3342 33603 . + . FI_gene_label "OSBPL10^ENSG00000144645.15" ; ID "OSBPL10--H3P11^OSBPL10^ENSG00000144645.15" ; ccdsid "CCDS2651.1" ; exon_id "ENSE00001525447.2" ; exon_number 1 ; gene_id "OSBPL10--H3P11^OSBPL10^ENSG00000144645.15" ; gene_name OSBPL10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130672.11" ; havana_transcript "OTTHUMT00000253165.2" ; hgnc_id "HGNC:16395" ; level 2 ; orig_coord_info "chr3,31980899,31981179,-" ; protein_id "ENSP00000379804.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "OSBPL10--H3P11^ENST00000396556.7" ; transcript_name "OSBPL10-201" ; transcript_support_level 1 ; transcript_type protein_coding
OSBPL10--H3P11 HAVANA mRNA 3342 33603 . + . FI_gene_label "OSBPL10^ENSG00000144645.15" ; ID "OSBPL10--H3P11^ENST00000396556.7" ; Parent "OSBPL10--H3P11^OSBPL10^ENSG00000144645.15" ; ccdsid "CCDS2651.1" ; exon_id "ENSE00001525447.2" ; exon_number 1 ; gene_id "OSBPL10--H3P11^OSBPL10^ENSG00000144645.15" ; gene_name OSBPL10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130672.11" ; havana_transcript "OTTHUMT00000253165.2" ; hgnc_id "HGNC:16395" ; level 2 ; orig_coord_info "chr3,31980899,31981179,-" ; protein_id "ENSP00000379804.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "OSBPL10--H3P11^ENST00000396556.7" ; transcript_name "OSBPL10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OSBPL10--THRAP3P1 HAVANA gene 3342 33603 . + . FI_gene_label "OSBPL10^ENSG00000144645.15" ; ID "OSBPL10--THRAP3P1^OSBPL10^ENSG00000144645.15" ; ccdsid "CCDS2651.1" ; exon_id "ENSE00001525447.2" ; exon_number 1 ; gene_id "OSBPL10--THRAP3P1^OSBPL10^ENSG00000144645.15" ; gene_name OSBPL10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130672.11" ; havana_transcript "OTTHUMT00000253165.2" ; hgnc_id "HGNC:16395" ; level 2 ; orig_coord_info "chr3,31980899,31981179,-" ; protein_id "ENSP00000379804.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "OSBPL10--THRAP3P1^ENST00000396556.7" ; transcript_name "OSBPL10-201" ; transcript_support_level 1 ; transcript_type protein_coding
OSBPL10--THRAP3P1 HAVANA mRNA 3342 33603 . + . FI_gene_label "OSBPL10^ENSG00000144645.15" ; ID "OSBPL10--THRAP3P1^ENST00000396556.7" ; Parent "OSBPL10--THRAP3P1^OSBPL10^ENSG00000144645.15" ; ccdsid "CCDS2651.1" ; exon_id "ENSE00001525447.2" ; exon_number 1 ; gene_id "OSBPL10--THRAP3P1^OSBPL10^ENSG00000144645.15" ; gene_name OSBPL10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130672.11" ; havana_transcript "OTTHUMT00000253165.2" ; hgnc_id "HGNC:16395" ; level 2 ; orig_coord_info "chr3,31980899,31981179,-" ; protein_id "ENSP00000379804.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "OSBPL10--THRAP3P1^ENST00000396556.7" ; transcript_name "OSBPL10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA5--PCDHA13 HAVANA gene 8249 16689 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA5--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA5--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA5--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA5--PCDHA13 HAVANA mRNA 8249 16689 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA5--PCDHA13^ENST00000289272.3" ; Parent "PCDHA5--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA5--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA5--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA5--PCDHA13 HAVANA gene 1001 5248 . + . FI_gene_label "PCDHA5^ENSG00000204965.9" ; ID "PCDHA5--PCDHA13^PCDHA5^ENSG00000204965.9" ; exon_id "ENSE00003729378.1" ; exon_number 1 ; gene_id "PCDHA5--PCDHA13^PCDHA5^ENSG00000204965.9" ; gene_name PCDHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163367.4" ; havana_transcript "OTTHUMT00000477514.1" ; hgnc_id "HGNC:8671" ; level 2 ; orig_coord_info "chr5,140821776,140824223,+" ; protein_id "ENSP00000484128.1" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA5--PCDHA13^ENST00000614258.1" ; transcript_name "PCDHA5-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA5--PCDHA13 HAVANA mRNA 1001 5248 . + . FI_gene_label "PCDHA5^ENSG00000204965.9" ; ID "PCDHA5--PCDHA13^ENST00000614258.1" ; Parent "PCDHA5--PCDHA13^PCDHA5^ENSG00000204965.9" ; exon_id "ENSE00003729378.1" ; exon_number 1 ; gene_id "PCDHA5--PCDHA13^PCDHA5^ENSG00000204965.9" ; gene_name PCDHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163367.4" ; havana_transcript "OTTHUMT00000477514.1" ; hgnc_id "HGNC:8671" ; level 2 ; orig_coord_info "chr5,140821776,140824223,+" ; protein_id "ENSP00000484128.1" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA5--PCDHA13^ENST00000614258.1" ; transcript_name "PCDHA5-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA5--PCDHAC1 HAVANA gene 8249 18264 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA5--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA5--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA5--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA5--PCDHAC1 HAVANA mRNA 8249 18264 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA5--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA5--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA5--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA5--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA5--PCDHAC1 HAVANA gene 1001 5248 . + . FI_gene_label "PCDHA5^ENSG00000204965.9" ; ID "PCDHA5--PCDHAC1^PCDHA5^ENSG00000204965.9" ; exon_id "ENSE00003729378.1" ; exon_number 1 ; gene_id "PCDHA5--PCDHAC1^PCDHA5^ENSG00000204965.9" ; gene_name PCDHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163367.4" ; havana_transcript "OTTHUMT00000477514.1" ; hgnc_id "HGNC:8671" ; level 2 ; orig_coord_info "chr5,140821776,140824223,+" ; protein_id "ENSP00000484128.1" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA5--PCDHAC1^ENST00000614258.1" ; transcript_name "PCDHA5-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA5--PCDHAC1 HAVANA mRNA 1001 5248 . + . FI_gene_label "PCDHA5^ENSG00000204965.9" ; ID "PCDHA5--PCDHAC1^ENST00000614258.1" ; Parent "PCDHA5--PCDHAC1^PCDHA5^ENSG00000204965.9" ; exon_id "ENSE00003729378.1" ; exon_number 1 ; gene_id "PCDHA5--PCDHAC1^PCDHA5^ENSG00000204965.9" ; gene_name PCDHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163367.4" ; havana_transcript "OTTHUMT00000477514.1" ; hgnc_id "HGNC:8671" ; level 2 ; orig_coord_info "chr5,140821776,140824223,+" ; protein_id "ENSP00000484128.1" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA5--PCDHAC1^ENST00000614258.1" ; transcript_name "PCDHA5-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA5--PCDHAC2 HAVANA gene 8255 18990 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA5--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA5--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA5--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA5--PCDHAC2 HAVANA mRNA 8255 18990 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA5--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA5--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA5--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA5--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA5--PCDHAC2 HAVANA gene 1001 5248 . + . FI_gene_label "PCDHA5^ENSG00000204965.9" ; ID "PCDHA5--PCDHAC2^PCDHA5^ENSG00000204965.9" ; exon_id "ENSE00003729378.1" ; exon_number 1 ; gene_id "PCDHA5--PCDHAC2^PCDHA5^ENSG00000204965.9" ; gene_name PCDHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163367.4" ; havana_transcript "OTTHUMT00000477514.1" ; hgnc_id "HGNC:8671" ; level 2 ; orig_coord_info "chr5,140821776,140824223,+" ; protein_id "ENSP00000484128.1" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA5--PCDHAC2^ENST00000614258.1" ; transcript_name "PCDHA5-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA5--PCDHAC2 HAVANA mRNA 1001 5248 . + . FI_gene_label "PCDHA5^ENSG00000204965.9" ; ID "PCDHA5--PCDHAC2^ENST00000614258.1" ; Parent "PCDHA5--PCDHAC2^PCDHA5^ENSG00000204965.9" ; exon_id "ENSE00003729378.1" ; exon_number 1 ; gene_id "PCDHA5--PCDHAC2^PCDHA5^ENSG00000204965.9" ; gene_name PCDHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163367.4" ; havana_transcript "OTTHUMT00000477514.1" ; hgnc_id "HGNC:8671" ; level 2 ; orig_coord_info "chr5,140821776,140824223,+" ; protein_id "ENSP00000484128.1" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA5--PCDHAC2^ENST00000614258.1" ; transcript_name "PCDHA5-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHA13 HAVANA gene 6617 15057 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA8--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA8--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA8--PCDHA13 HAVANA mRNA 6617 15057 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA8--PCDHA13^ENST00000289272.3" ; Parent "PCDHA8--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA8--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHA13 HAVANA gene 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHA13^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHA13^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHA13^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA8--PCDHA13 HAVANA mRNA 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHA13^ENST00000378123.4" ; Parent "PCDHA8--PCDHA13^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHA13^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHA13^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHAC1 HAVANA gene 6617 16632 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA8--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA8--PCDHAC1 HAVANA mRNA 6617 16632 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA8--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA8--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHAC1 HAVANA gene 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHAC1^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC1^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHAC1^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA8--PCDHAC1 HAVANA mRNA 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHAC1^ENST00000378123.4" ; Parent "PCDHA8--PCDHAC1^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC1^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHAC1^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHAC2 HAVANA gene 6623 17358 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA8--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA8--PCDHAC2 HAVANA mRNA 6623 17358 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA8--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA8--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA8--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA8--PCDHAC2 HAVANA gene 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHAC2^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC2^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHAC2^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA8--PCDHAC2 HAVANA mRNA 1001 3616 . + . FI_gene_label "PCDHA8^ENSG00000204962.6" ; ID "PCDHA8--PCDHAC2^ENST00000378123.4" ; Parent "PCDHA8--PCDHAC2^PCDHA8^ENSG00000204962.6" ; exon_id "ENSE00001476361.4" ; exon_number 1 ; gene_id "PCDHA8--PCDHAC2^PCDHA8^ENSG00000204962.6" ; gene_name PCDHA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163354.4" ; havana_transcript "OTTHUMT00000477552.1" ; hgnc_id "HGNC:8674" ; level 2 ; orig_coord_info "chr5,140841322,140843763,+" ; protein_id "ENSP00000367363.3" ; tag basic ; transcript_id "PCDHA8--PCDHAC2^ENST00000378123.4" ; transcript_name "PCDHA8-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PMS2P6--CCDC146 HAVANA gene 9058 29425 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P6--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
PMS2P6--CCDC146 HAVANA mRNA 9058 29425 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P6--CCDC146^ENST00000285871.5" ; Parent "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P6--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRKAG2--PRIM2 HAVANA gene 42532 47130 . + . FI_gene_label "PRIM2^ENSG00000146143.19" ; ID "PRKAG2--PRIM2^PRIM2^ENSG00000146143.19" ; ccdsid "CCDS75477.1" ; exon_id "ENSE00003751924.1" ; exon_number 2 ; gene_id "PRKAG2--PRIM2^PRIM2^ENSG00000146143.19" ; gene_name PRIM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016190.8" ; havana_transcript "OTTHUMT00000043472.3" ; hgnc_id "HGNC:9370" ; level 2 ; orig_coord_info "chr6,57318446,57318599,+" ; protein_id "ENSP00000485304.1" ; tag basic CCDS ; transcript_id "PRKAG2--PRIM2^ENST00000274891.10" ; transcript_name "PRIM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRKAG2--PRIM2 HAVANA mRNA 42532 47130 . + . FI_gene_label "PRIM2^ENSG00000146143.19" ; ID "PRKAG2--PRIM2^ENST00000274891.10" ; Parent "PRKAG2--PRIM2^PRIM2^ENSG00000146143.19" ; ccdsid "CCDS75477.1" ; exon_id "ENSE00003751924.1" ; exon_number 2 ; gene_id "PRKAG2--PRIM2^PRIM2^ENSG00000146143.19" ; gene_name PRIM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016190.8" ; havana_transcript "OTTHUMT00000043472.3" ; hgnc_id "HGNC:9370" ; level 2 ; orig_coord_info "chr6,57318446,57318599,+" ; protein_id "ENSP00000485304.1" ; tag basic CCDS ; transcript_id "PRKAG2--PRIM2^ENST00000274891.10" ; transcript_name "PRIM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRKAG2--PRIM2 HAVANA gene 1011 38412 . + . FI_gene_label "PRKAG2^ENSG00000106617.15" ; ID "PRKAG2--PRIM2^PRKAG2^ENSG00000106617.15" ; ccdsid "CCDS5928.1" ; exon_id "ENSE00003552936.2" ; exon_number 1 ; gene_id "PRKAG2--PRIM2^PRKAG2^ENSG00000106617.15" ; gene_name PRKAG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157324.26" ; havana_transcript "OTTHUMT00000348440.4" ; hgnc_id "HGNC:9386" ; level 2 ; orig_coord_info "chr7,151876507,151876620,-" ; protein_id "ENSP00000287878.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_4 CCDS ; transcript_id "PRKAG2--PRIM2^ENST00000287878.9" ; transcript_name "PRKAG2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRKAG2--PRIM2 HAVANA mRNA 1011 38412 . + . FI_gene_label "PRKAG2^ENSG00000106617.15" ; ID "PRKAG2--PRIM2^ENST00000287878.9" ; Parent "PRKAG2--PRIM2^PRKAG2^ENSG00000106617.15" ; ccdsid "CCDS5928.1" ; exon_id "ENSE00003552936.2" ; exon_number 1 ; gene_id "PRKAG2--PRIM2^PRKAG2^ENSG00000106617.15" ; gene_name PRKAG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157324.26" ; havana_transcript "OTTHUMT00000348440.4" ; hgnc_id "HGNC:9386" ; level 2 ; orig_coord_info "chr7,151876507,151876620,-" ; protein_id "ENSP00000287878.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_4 CCDS ; transcript_id "PRKAG2--PRIM2^ENST00000287878.9" ; transcript_name "PRKAG2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTBP3--SUSD1 HAVANA gene 1636 7412 . + . FI_gene_label "PTBP3^ENSG00000119314.16" ; ID "PTBP3--SUSD1^PTBP3^ENSG00000119314.16" ; exon_id "ENSE00001333878.4" ; exon_number 1 ; gene_id "PTBP3--SUSD1^PTBP3^ENSG00000119314.16" ; gene_name PTBP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020503.3" ; havana_transcript "OTTHUMT00000053674.2" ; hgnc_id "HGNC:10253" ; level 2 ; orig_coord_info "chr9,112332784,112332843,-" ; protein_id "ENSP00000210227.4" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PTBP3--SUSD1^ENST00000210227.4" ; transcript_name "PTBP3-201" ; transcript_support_level 2 ; transcript_type protein_coding
PTBP3--SUSD1 HAVANA mRNA 1636 7412 . + . FI_gene_label "PTBP3^ENSG00000119314.16" ; ID "PTBP3--SUSD1^ENST00000210227.4" ; Parent "PTBP3--SUSD1^PTBP3^ENSG00000119314.16" ; exon_id "ENSE00001333878.4" ; exon_number 1 ; gene_id "PTBP3--SUSD1^PTBP3^ENSG00000119314.16" ; gene_name PTBP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020503.3" ; havana_transcript "OTTHUMT00000053674.2" ; hgnc_id "HGNC:10253" ; level 2 ; orig_coord_info "chr9,112332784,112332843,-" ; protein_id "ENSP00000210227.4" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PTBP3--SUSD1^ENST00000210227.4" ; transcript_name "PTBP3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PTBP3--SUSD1 HAVANA gene 25375 47309 . + . FI_gene_label "SUSD1^ENSG00000106868.17" ; ID "PTBP3--SUSD1^SUSD1^ENSG00000106868.17" ; exon_id "ENSE00001706926.1" ; exon_number 1 ; gene_id "PTBP3--SUSD1^SUSD1^ENSG00000106868.17" ; gene_name SUSD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020499.5" ; havana_transcript "OTTHUMT00000053667.2" ; hgnc_id "HGNC:25413" ; level 1 ; orig_coord_info "chr9,112175133,112175185,-" ; protein_id "ENSP00000347558.3" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "PTBP3--SUSD1^ENST00000355396.7" ; transcript_name "SUSD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
PTBP3--SUSD1 HAVANA mRNA 25375 47309 . + . FI_gene_label "SUSD1^ENSG00000106868.17" ; ID "PTBP3--SUSD1^ENST00000355396.7" ; Parent "PTBP3--SUSD1^SUSD1^ENSG00000106868.17" ; exon_id "ENSE00001706926.1" ; exon_number 1 ; gene_id "PTBP3--SUSD1^SUSD1^ENSG00000106868.17" ; gene_name SUSD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020499.5" ; havana_transcript "OTTHUMT00000053667.2" ; hgnc_id "HGNC:25413" ; level 1 ; orig_coord_info "chr9,112175133,112175185,-" ; protein_id "ENSP00000347558.3" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "PTBP3--SUSD1^ENST00000355396.7" ; transcript_name "SUSD1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PTK2--TRAPPC9 HAVANA gene 2059 60797 . + . FI_gene_label "PTK2^ENSG00000169398.19" ; ID "PTK2--TRAPPC9^PTK2^ENSG00000169398.19" ; ccdsid "CCDS56557.1" ; exon_id "ENSE00003798215.1" ; exon_number 3 ; gene_id "PTK2--TRAPPC9^PTK2^ENSG00000169398.19" ; gene_name PTK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000067438.25" ; havana_transcript "OTTHUMT00000378103.1" ; hgnc_id "HGNC:9611" ; level 2 ; orig_coord_info "chr8,140890543,140890737,-" ; protein_id "ENSP00000341189.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTK2--TRAPPC9^ENST00000340930.7" ; transcript_name "PTK2-201" ; transcript_support_level 2 ; transcript_type protein_coding
PTK2--TRAPPC9 HAVANA mRNA 2059 60797 . + . FI_gene_label "PTK2^ENSG00000169398.19" ; ID "PTK2--TRAPPC9^ENST00000340930.7" ; Parent "PTK2--TRAPPC9^PTK2^ENSG00000169398.19" ; ccdsid "CCDS56557.1" ; exon_id "ENSE00003798215.1" ; exon_number 3 ; gene_id "PTK2--TRAPPC9^PTK2^ENSG00000169398.19" ; gene_name PTK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000067438.25" ; havana_transcript "OTTHUMT00000378103.1" ; hgnc_id "HGNC:9611" ; level 2 ; orig_coord_info "chr8,140890543,140890737,-" ; protein_id "ENSP00000341189.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTK2--TRAPPC9^ENST00000340930.7" ; transcript_name "PTK2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PTK2--TRAPPC9 HAVANA gene 65138 106243 . + . FI_gene_label "TRAPPC9^ENSG00000167632.18" ; ID "PTK2--TRAPPC9^TRAPPC9^ENSG00000167632.18" ; ccdsid "CCDS55278.1" ; exon_id "ENSE00003610885.1" ; exon_number 2 ; gene_id "PTK2--TRAPPC9^TRAPPC9^ENSG00000167632.18" ; gene_name TRAPPC9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164187.10" ; havana_transcript "OTTHUMT00000497841.1" ; hgnc_id "HGNC:30832" ; level 2 ; orig_coord_info "chr8,140450790,140451373,-" ; protein_id "ENSP00000405060.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTK2--TRAPPC9^ENST00000438773.4" ; transcript_name "TRAPPC9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTK2--TRAPPC9 HAVANA mRNA 65138 106243 . + . FI_gene_label "TRAPPC9^ENSG00000167632.18" ; ID "PTK2--TRAPPC9^ENST00000438773.4" ; Parent "PTK2--TRAPPC9^TRAPPC9^ENSG00000167632.18" ; ccdsid "CCDS55278.1" ; exon_id "ENSE00003610885.1" ; exon_number 2 ; gene_id "PTK2--TRAPPC9^TRAPPC9^ENSG00000167632.18" ; gene_name TRAPPC9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164187.10" ; havana_transcript "OTTHUMT00000497841.1" ; hgnc_id "HGNC:30832" ; level 2 ; orig_coord_info "chr8,140450790,140451373,-" ; protein_id "ENSP00000405060.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTK2--TRAPPC9^ENST00000438773.4" ; transcript_name "TRAPPC9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
QKI--AL137005.1 HAVANA gene 1644 19444 . + . FI_gene_label "QKI^ENSG00000112531.17" ; ID "QKI--AL137005.1^QKI^ENSG00000112531.17" ; ccdsid "CCDS5287.1" ; exon_id "ENSE00002239670.1" ; exon_number 1 ; gene_id "QKI--AL137005.1^QKI^ENSG00000112531.17" ; gene_name QKI ; gene_type protein_coding ; havana_gene "OTTHUMG00000015977.6" ; havana_transcript "OTTHUMT00000043018.2" ; hgnc_id "HGNC:21100" ; level 2 ; orig_coord_info "chr6,163415194,163415335,+" ; protein_id "ENSP00000275262.7" ; tag basic CCDS ; transcript_id "QKI--AL137005.1^ENST00000275262.11" ; transcript_name "QKI-201" ; transcript_support_level 1 ; transcript_type protein_coding
QKI--AL137005.1 HAVANA mRNA 1644 19444 . + . FI_gene_label "QKI^ENSG00000112531.17" ; ID "QKI--AL137005.1^ENST00000275262.11" ; Parent "QKI--AL137005.1^QKI^ENSG00000112531.17" ; ccdsid "CCDS5287.1" ; exon_id "ENSE00002239670.1" ; exon_number 1 ; gene_id "QKI--AL137005.1^QKI^ENSG00000112531.17" ; gene_name QKI ; gene_type protein_coding ; havana_gene "OTTHUMG00000015977.6" ; havana_transcript "OTTHUMT00000043018.2" ; hgnc_id "HGNC:21100" ; level 2 ; orig_coord_info "chr6,163415194,163415335,+" ; protein_id "ENSP00000275262.7" ; tag basic CCDS ; transcript_id "QKI--AL137005.1^ENST00000275262.11" ; transcript_name "QKI-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF138--AF254982.1 HAVANA gene 1817 11304 . + . FI_gene_label "RNF138^ENSG00000134758.14" ; ID "RNF138--AF254982.1^RNF138^ENSG00000134758.14" ; ccdsid "CCDS11904.1" ; exon_id "ENSE00001548716.2" ; exon_number 1 ; gene_id "RNF138--AF254982.1^RNF138^ENSG00000134758.14" ; gene_name RNF138 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132265.4" ; havana_transcript "OTTHUMT00000255353.1" ; hgnc_id "HGNC:17765" ; level 2 ; orig_coord_info "chr18,32092777,32092886,+" ; protein_id "ENSP00000257190.5" ; tag basic CCDS ; transcript_id "RNF138--AF254982.1^ENST00000257190.9" ; transcript_name "RNF138-201" ; transcript_support_level 2 ; transcript_type protein_coding
RNF138--AF254982.1 HAVANA mRNA 1817 11304 . + . FI_gene_label "RNF138^ENSG00000134758.14" ; ID "RNF138--AF254982.1^ENST00000257190.9" ; Parent "RNF138--AF254982.1^RNF138^ENSG00000134758.14" ; ccdsid "CCDS11904.1" ; exon_id "ENSE00001548716.2" ; exon_number 1 ; gene_id "RNF138--AF254982.1^RNF138^ENSG00000134758.14" ; gene_name RNF138 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132265.4" ; havana_transcript "OTTHUMT00000255353.1" ; hgnc_id "HGNC:17765" ; level 2 ; orig_coord_info "chr18,32092777,32092886,+" ; protein_id "ENSP00000257190.5" ; tag basic CCDS ; transcript_id "RNF138--AF254982.1^ENST00000257190.9" ; transcript_name "RNF138-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RNF138--AP001464.1 HAVANA gene 1817 11304 . + . FI_gene_label "RNF138^ENSG00000134758.14" ; ID "RNF138--AP001464.1^RNF138^ENSG00000134758.14" ; ccdsid "CCDS11904.1" ; exon_id "ENSE00001548716.2" ; exon_number 1 ; gene_id "RNF138--AP001464.1^RNF138^ENSG00000134758.14" ; gene_name RNF138 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132265.4" ; havana_transcript "OTTHUMT00000255353.1" ; hgnc_id "HGNC:17765" ; level 2 ; orig_coord_info "chr18,32092777,32092886,+" ; protein_id "ENSP00000257190.5" ; tag basic CCDS ; transcript_id "RNF138--AP001464.1^ENST00000257190.9" ; transcript_name "RNF138-201" ; transcript_support_level 2 ; transcript_type protein_coding
RNF138--AP001464.1 HAVANA mRNA 1817 11304 . + . FI_gene_label "RNF138^ENSG00000134758.14" ; ID "RNF138--AP001464.1^ENST00000257190.9" ; Parent "RNF138--AP001464.1^RNF138^ENSG00000134758.14" ; ccdsid "CCDS11904.1" ; exon_id "ENSE00001548716.2" ; exon_number 1 ; gene_id "RNF138--AP001464.1^RNF138^ENSG00000134758.14" ; gene_name RNF138 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132265.4" ; havana_transcript "OTTHUMT00000255353.1" ; hgnc_id "HGNC:17765" ; level 2 ; orig_coord_info "chr18,32092777,32092886,+" ; protein_id "ENSP00000257190.5" ; tag basic CCDS ; transcript_id "RNF138--AP001464.1^ENST00000257190.9" ; transcript_name "RNF138-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SETDB1--SPTA1 HAVANA gene 1077 21180 . + . FI_gene_label "SETDB1^ENSG00000143379.12" ; ID "SETDB1--SPTA1^SETDB1^ENSG00000143379.12" ; ccdsid "CCDS44217.1" ; exon_id "ENSE00003524194.1" ; exon_number 2 ; gene_id "SETDB1--SPTA1^SETDB1^ENSG00000143379.12" ; gene_name SETDB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035003.7" ; havana_transcript "OTTHUMT00000084717.2" ; hgnc_id "HGNC:10761" ; level 2 ; orig_coord_info "chr1,150927715,150927974,+" ; protein_id "ENSP00000271640.5" ; tag basic appris_principal_2 CCDS ; transcript_id "SETDB1--SPTA1^ENST00000271640.9" ; transcript_name "SETDB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SETDB1--SPTA1 HAVANA mRNA 1077 21180 . + . FI_gene_label "SETDB1^ENSG00000143379.12" ; ID "SETDB1--SPTA1^ENST00000271640.9" ; Parent "SETDB1--SPTA1^SETDB1^ENSG00000143379.12" ; ccdsid "CCDS44217.1" ; exon_id "ENSE00003524194.1" ; exon_number 2 ; gene_id "SETDB1--SPTA1^SETDB1^ENSG00000143379.12" ; gene_name SETDB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000035003.7" ; havana_transcript "OTTHUMT00000084717.2" ; hgnc_id "HGNC:10761" ; level 2 ; orig_coord_info "chr1,150927715,150927974,+" ; protein_id "ENSP00000271640.5" ; tag basic appris_principal_2 CCDS ; transcript_id "SETDB1--SPTA1^ENST00000271640.9" ; transcript_name "SETDB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SETDB1--SPTA1 HAVANA gene 24190 74857 . + . FI_gene_label "SPTA1^ENSG00000163554.15" ; ID "SETDB1--SPTA1^SPTA1^ENSG00000163554.15" ; ccdsid "CCDS41423.1" ; exon_id "ENSE00001832787.2" ; exon_number 1 ; gene_id "SETDB1--SPTA1^SPTA1^ENSG00000163554.15" ; gene_name SPTA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019636.8" ; havana_transcript "OTTHUMT00000496677.2" ; hgnc_id "HGNC:11272" ; level 2 ; orig_coord_info "chr1,158686494,158686517,-" ; protein_id "ENSP00000495214.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "SETDB1--SPTA1^ENST00000643759.2" ; transcript_name "SPTA1-208" ; transcript_type protein_coding
SETDB1--SPTA1 HAVANA mRNA 24190 74857 . + . FI_gene_label "SPTA1^ENSG00000163554.15" ; ID "SETDB1--SPTA1^ENST00000643759.2" ; Parent "SETDB1--SPTA1^SPTA1^ENSG00000163554.15" ; ccdsid "CCDS41423.1" ; exon_id "ENSE00001832787.2" ; exon_number 1 ; gene_id "SETDB1--SPTA1^SPTA1^ENSG00000163554.15" ; gene_name SPTA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019636.8" ; havana_transcript "OTTHUMT00000496677.2" ; hgnc_id "HGNC:11272" ; level 2 ; orig_coord_info "chr1,158686494,158686517,-" ; protein_id "ENSP00000495214.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "SETDB1--SPTA1^ENST00000643759.2" ; transcript_name "SPTA1-208" ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 20137 25049 . + . FI_gene_label "KIAA0408^ENSG00000189367.15" ; ID "SOGA3--KIAA0408^ENST00000465254.2" ; Parent "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; exon_id "ENSE00001831610.2" ; exon_number 1 ; gene_id "SOGA3--KIAA0408^KIAA0408^ENSG00000189367.15" ; gene_name KIAA0408 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166439.4" ; havana_transcript "OTTHUMT00000042140.2" ; hgnc_id "HGNC:21636" ; level 1 ; orig_coord_info "chr6,127446872,127447085,-" ; protein_id "ENSP00000436178.1" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SOGA3--KIAA0408^ENST00000465254.2" ; transcript_name "KIAA0408-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SOGA3--KIAA0408 HAVANA gene 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
SOGA3--KIAA0408 HAVANA mRNA 1301 11362 . + . FI_gene_label "SOGA3^ENSG00000214338.10" ; ID "SOGA3--KIAA0408^ENST00000465909.2" ; Parent "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; exon_id "ENSE00003609368.1" ; exon_number 2 ; gene_id "SOGA3--KIAA0408^SOGA3^ENSG00000214338.10" ; gene_name SOGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166438.2" ; havana_transcript "OTTHUMT00000388286.1" ; hgnc_id "HGNC:21494" ; level 2 ; orig_coord_info "chr6,127515514,127516614,-" ; protein_id "ENSP00000435559.1" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "SOGA3--KIAA0408^ENST00000465909.2" ; transcript_name "SOGA3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
SUPT3H--TDRG1 HAVANA gene 12591 17872 . + . FI_gene_label "SUPT3H^ENSG00000196284.17" ; ID "SUPT3H--TDRG1^SUPT3H^ENSG00000196284.17" ; exon_id "ENSE00003500510.1" ; exon_number 2 ; gene_id "SUPT3H--TDRG1^SUPT3H^ENSG00000196284.17" ; gene_name SUPT3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000014773.6" ; havana_transcript "OTTHUMT00000040752.2" ; hgnc_id "HGNC:11466" ; level 2 ; orig_coord_info "chr6,44954495,44954536,-" ; protein_id "ENSP00000360513.1" ; tag basic ; transcript_id "SUPT3H--TDRG1^ENST00000371458.1" ; transcript_name "SUPT3H-201" ; transcript_support_level 5 ; transcript_type protein_coding
SUPT3H--TDRG1 HAVANA mRNA 12591 17872 . + . FI_gene_label "SUPT3H^ENSG00000196284.17" ; ID "SUPT3H--TDRG1^ENST00000371458.1" ; Parent "SUPT3H--TDRG1^SUPT3H^ENSG00000196284.17" ; exon_id "ENSE00003500510.1" ; exon_number 2 ; gene_id "SUPT3H--TDRG1^SUPT3H^ENSG00000196284.17" ; gene_name SUPT3H ; gene_type protein_coding ; havana_gene "OTTHUMG00000014773.6" ; havana_transcript "OTTHUMT00000040752.2" ; hgnc_id "HGNC:11466" ; level 2 ; orig_coord_info "chr6,44954495,44954536,-" ; protein_id "ENSP00000360513.1" ; tag basic ; transcript_id "SUPT3H--TDRG1^ENST00000371458.1" ; transcript_name "SUPT3H-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TOX--MAILR HAVANA gene 1001 12410 . + . FI_gene_label "TOX^ENSG00000198846.6" ; ID "TOX--MAILR^TOX^ENSG00000198846.6" ; ccdsid "CCDS34897.1" ; exon_id "ENSE00002717862.2" ; exon_number 1 ; gene_id "TOX--MAILR^TOX^ENSG00000198846.6" ; gene_name TOX ; gene_type protein_coding ; havana_gene "OTTHUMG00000164331.3" ; havana_transcript "OTTHUMT00000378307.2" ; hgnc_id "HGNC:18988" ; level 2 ; orig_coord_info "chr8,59118886,59118987,-" ; protein_id "ENSP00000354842.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TOX--MAILR^ENST00000361421.2" ; transcript_name "TOX-201" ; transcript_support_level 1 ; transcript_type protein_coding
TOX--MAILR HAVANA mRNA 1001 12410 . + . FI_gene_label "TOX^ENSG00000198846.6" ; ID "TOX--MAILR^ENST00000361421.2" ; Parent "TOX--MAILR^TOX^ENSG00000198846.6" ; ccdsid "CCDS34897.1" ; exon_id "ENSE00002717862.2" ; exon_number 1 ; gene_id "TOX--MAILR^TOX^ENSG00000198846.6" ; gene_name TOX ; gene_type protein_coding ; havana_gene "OTTHUMG00000164331.3" ; havana_transcript "OTTHUMT00000378307.2" ; hgnc_id "HGNC:18988" ; level 2 ; orig_coord_info "chr8,59118886,59118987,-" ; protein_id "ENSP00000354842.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TOX--MAILR^ENST00000361421.2" ; transcript_name "TOX-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS53--PRPF8 HAVANA gene 2552 62572 . + . FI_gene_label "VPS53^ENSG00000141252.21" ; ID "VPS53--PRPF8^VPS53^ENSG00000141252.21" ; ccdsid "CCDS10995.1" ; exon_id "ENSE00003911581.1" ; exon_number 1 ; gene_id "VPS53--PRPF8^VPS53^ENSG00000141252.21" ; gene_name VPS53 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177441.12" ; havana_transcript "OTTHUMT00000436931.2" ; hgnc_id "HGNC:25608" ; level 2 ; orig_coord_info "chr17,714623,714709,-" ; protein_id "ENSP00000291074.5" ; tag basic CCDS ; transcript_id "VPS53--PRPF8^ENST00000291074.10" ; transcript_name "VPS53-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS53--PRPF8 HAVANA mRNA 2552 62572 . + . FI_gene_label "VPS53^ENSG00000141252.21" ; ID "VPS53--PRPF8^ENST00000291074.10" ; Parent "VPS53--PRPF8^VPS53^ENSG00000141252.21" ; ccdsid "CCDS10995.1" ; exon_id "ENSE00003911581.1" ; exon_number 1 ; gene_id "VPS53--PRPF8^VPS53^ENSG00000141252.21" ; gene_name VPS53 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177441.12" ; havana_transcript "OTTHUMT00000436931.2" ; hgnc_id "HGNC:25608" ; level 2 ; orig_coord_info "chr17,714623,714709,-" ; protein_id "ENSP00000291074.5" ; tag basic CCDS ; transcript_id "VPS53--PRPF8^ENST00000291074.10" ; transcript_name "VPS53-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS53--PRPF8 HAVANA gene 81740 105700 . + . FI_gene_label "PRPF8^ENSG00000174231.17" ; ID "VPS53--PRPF8^PRPF8^ENSG00000174231.17" ; ccdsid "CCDS11010.1" ; exon_id "ENSE00003537012.1" ; exon_number 2 ; gene_id "VPS53--PRPF8^PRPF8^ENSG00000174231.17" ; gene_name PRPF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090553.7" ; havana_transcript "OTTHUMT00000207079.4" ; hgnc_id "HGNC:17340" ; level 2 ; orig_coord_info "chr17,1684472,1684571,-" ; protein_id "ENSP00000304350.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VPS53--PRPF8^ENST00000304992.11" ; transcript_name "PRPF8-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS53--PRPF8 HAVANA mRNA 81740 105700 . + . FI_gene_label "PRPF8^ENSG00000174231.17" ; ID "VPS53--PRPF8^ENST00000304992.11" ; Parent "VPS53--PRPF8^PRPF8^ENSG00000174231.17" ; ccdsid "CCDS11010.1" ; exon_id "ENSE00003537012.1" ; exon_number 2 ; gene_id "VPS53--PRPF8^PRPF8^ENSG00000174231.17" ; gene_name PRPF8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090553.7" ; havana_transcript "OTTHUMT00000207079.4" ; hgnc_id "HGNC:17340" ; level 2 ; orig_coord_info "chr17,1684472,1684571,-" ; protein_id "ENSP00000304350.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VPS53--PRPF8^ENST00000304992.11" ; transcript_name "PRPF8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WNK1--ERC1 HAVANA gene 1001 42908 . + . FI_gene_label "WNK1^ENSG00000060237.19" ; ID "WNK1--ERC1^WNK1^ENSG00000060237.19" ; ccdsid "CCDS8506.1" ; exon_id "ENSE00003847370.1" ; exon_number 1 ; gene_id "WNK1--ERC1^WNK1^ENSG00000060237.19" ; gene_name WNK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090321.6" ; havana_transcript "OTTHUMT00000206683.2" ; hgnc_id "HGNC:14540" ; level 2 ; orig_coord_info "chr12,753566,754324,+" ; protein_id "ENSP00000313059.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "WNK1--ERC1^ENST00000315939.11" ; transcript_name "WNK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
WNK1--ERC1 HAVANA mRNA 1001 42908 . + . FI_gene_label "WNK1^ENSG00000060237.19" ; ID "WNK1--ERC1^ENST00000315939.11" ; Parent "WNK1--ERC1^WNK1^ENSG00000060237.19" ; ccdsid "CCDS8506.1" ; exon_id "ENSE00003847370.1" ; exon_number 1 ; gene_id "WNK1--ERC1^WNK1^ENSG00000060237.19" ; gene_name WNK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090321.6" ; havana_transcript "OTTHUMT00000206683.2" ; hgnc_id "HGNC:14540" ; level 2 ; orig_coord_info "chr12,753566,754324,+" ; protein_id "ENSP00000313059.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "WNK1--ERC1^ENST00000315939.11" ; transcript_name "WNK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WNK1--ERC1 HAVANA gene 46638 82349 . + . FI_gene_label "ERC1^ENSG00000082805.20" ; ID "WNK1--ERC1^ERC1^ENSG00000082805.20" ; exon_id "ENSE00001318114.5" ; exon_number 2 ; gene_id "WNK1--ERC1^ERC1^ENSG00000082805.20" ; gene_name ERC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130138.14" ; havana_transcript "OTTHUMT00000398378.1" ; hgnc_id "HGNC:17072" ; level 2 ; orig_coord_info "chr12,1027904,1028572,+" ; protein_id "ENSP00000340054.6" ; transcript_id "WNK1--ERC1^ENST00000347735.10" ; transcript_name "ERC1-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
WNK1--ERC1 HAVANA mRNA 46638 82349 . + . FI_gene_label "ERC1^ENSG00000082805.20" ; ID "WNK1--ERC1^ENST00000347735.10" ; Parent "WNK1--ERC1^ERC1^ENSG00000082805.20" ; exon_id "ENSE00001318114.5" ; exon_number 2 ; gene_id "WNK1--ERC1^ERC1^ENSG00000082805.20" ; gene_name ERC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130138.14" ; havana_transcript "OTTHUMT00000398378.1" ; hgnc_id "HGNC:17072" ; level 2 ; orig_coord_info "chr12,1027904,1028572,+" ; protein_id "ENSP00000340054.6" ; transcript_id "WNK1--ERC1^ENST00000347735.10" ; transcript_name "ERC1-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
WRN--ACSBG1 HAVANA gene 44246 65162 . + . FI_gene_label "ACSBG1^ENSG00000103740.10" ; ID "WRN--ACSBG1^ACSBG1^ENSG00000103740.10" ; ccdsid "CCDS10298.1" ; exon_id "ENSE00002554442.2" ; exon_number 1 ; gene_id "WRN--ACSBG1^ACSBG1^ENSG00000103740.10" ; gene_name ACSBG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000143734.6" ; havana_transcript "OTTHUMT00000289802.3" ; hgnc_id "HGNC:29567" ; level 2 ; orig_coord_info "chr15,78234371,78234501,-" ; protein_id "ENSP00000258873.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WRN--ACSBG1^ENST00000258873.9" ; transcript_name "ACSBG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
WRN--ACSBG1 HAVANA mRNA 44246 65162 . + . FI_gene_label "ACSBG1^ENSG00000103740.10" ; ID "WRN--ACSBG1^ENST00000258873.9" ; Parent "WRN--ACSBG1^ACSBG1^ENSG00000103740.10" ; ccdsid "CCDS10298.1" ; exon_id "ENSE00002554442.2" ; exon_number 1 ; gene_id "WRN--ACSBG1^ACSBG1^ENSG00000103740.10" ; gene_name ACSBG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000143734.6" ; havana_transcript "OTTHUMT00000289802.3" ; hgnc_id "HGNC:29567" ; level 2 ; orig_coord_info "chr15,78234371,78234501,-" ; protein_id "ENSP00000258873.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WRN--ACSBG1^ENST00000258873.9" ; transcript_name "ACSBG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WRN--ACSBG1 HAVANA gene 1023 39765 . + . FI_gene_label "WRN^ENSG00000165392.11" ; ID "WRN--ACSBG1^WRN^ENSG00000165392.11" ; ccdsid "CCDS6082.1" ; exon_id "ENSE00001092693.2" ; exon_number 2 ; gene_id "WRN--ACSBG1^WRN^ENSG00000165392.11" ; gene_name WRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000163894.4" ; havana_transcript "OTTHUMT00000376248.3" ; hgnc_id "HGNC:12791" ; level 2 ; orig_coord_info "chr8,31058448,31058543,+" ; protein_id "ENSP00000298139.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "WRN--ACSBG1^ENST00000298139.7" ; transcript_name "WRN-201" ; transcript_support_level 1 ; transcript_type protein_coding
WRN--ACSBG1 HAVANA mRNA 1023 39765 . + . FI_gene_label "WRN^ENSG00000165392.11" ; ID "WRN--ACSBG1^ENST00000298139.7" ; Parent "WRN--ACSBG1^WRN^ENSG00000165392.11" ; ccdsid "CCDS6082.1" ; exon_id "ENSE00001092693.2" ; exon_number 2 ; gene_id "WRN--ACSBG1^WRN^ENSG00000165392.11" ; gene_name WRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000163894.4" ; havana_transcript "OTTHUMT00000376248.3" ; hgnc_id "HGNC:12791" ; level 2 ; orig_coord_info "chr8,31058448,31058543,+" ; protein_id "ENSP00000298139.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "WRN--ACSBG1^ENST00000298139.7" ; transcript_name "WRN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
ENAH--AL136379.1 HAVANA gene 34310 36374 . + . FI_gene_label "AL136379.1^ENSG00000287895.1" ; ID "ENAH--AL136379.1^AL136379.1^ENSG00000287895.1" ; exon_id "ENSE00003852034.1" ; exon_number 1 ; gene_id "ENAH--AL136379.1^AL136379.1^ENSG00000287895.1" ; gene_name "AL136379.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194786.1" ; havana_transcript "OTTHUMT00000521993.1" ; level 2 ; orig_coord_info "chr1,228121058,228121312,-" ; tag basic TAGENE ; transcript_id "ENAH--AL136379.1^ENST00000668268.1" ; transcript_name "AL136379.1-201" ; transcript_type lncRNA
ENAH--AL136379.1 HAVANA RNA 34310 36374 . + . FI_gene_label "AL136379.1^ENSG00000287895.1" ; ID "ENAH--AL136379.1^ENST00000668268.1" ; Parent "ENAH--AL136379.1^AL136379.1^ENSG00000287895.1" ; exon_id "ENSE00003852034.1" ; exon_number 1 ; gene_id "ENAH--AL136379.1^AL136379.1^ENSG00000287895.1" ; gene_name "AL136379.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194786.1" ; havana_transcript "OTTHUMT00000521993.1" ; level 2 ; orig_coord_info "chr1,228121058,228121312,-" ; tag basic TAGENE ; transcript_id "ENAH--AL136379.1^ENST00000668268.1" ; transcript_name "AL136379.1-201" ; transcript_type lncRNA
L1 and L2 created:
FXR1--SOX2-OT HAVANA gene 41395 79493 . + . FI_gene_label "SOX2-OT^ENSG00000242808.10" ; ID "FXR1--SOX2-OT^SOX2-OT^ENSG00000242808.10" ; exon_id "ENSE00001840422.1" ; exon_number 1 ; gene_id "FXR1--SOX2-OT^SOX2-OT^ENSG00000242808.10" ; gene_name "SOX2-OT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158186.13" ; havana_transcript "OTTHUMT00000350422.2" ; hgnc_id "HGNC:20209" ; level 2 ; orig_coord_info "chr3,181056685,181056786,+" ; transcript_id "FXR1--SOX2-OT^ENST00000460739.5" ; transcript_name "SOX2-OT-201" ; transcript_support_level 4 ; transcript_type lncRNA
FXR1--SOX2-OT HAVANA RNA 41395 79493 . + . FI_gene_label "SOX2-OT^ENSG00000242808.10" ; ID "FXR1--SOX2-OT^ENST00000460739.5" ; Parent "FXR1--SOX2-OT^SOX2-OT^ENSG00000242808.10" ; exon_id "ENSE00001840422.1" ; exon_number 1 ; gene_id "FXR1--SOX2-OT^SOX2-OT^ENSG00000242808.10" ; gene_name "SOX2-OT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158186.13" ; havana_transcript "OTTHUMT00000350422.2" ; hgnc_id "HGNC:20209" ; level 2 ; orig_coord_info "chr3,181056685,181056786,+" ; transcript_id "FXR1--SOX2-OT^ENST00000460739.5" ; transcript_name "SOX2-OT-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
NBPF10--AC243829.3 HAVANA gene 84022 84129 . + . FI_gene_label "AC243829.3^ENSG00000276755.1" ; ID "NBPF10--AC243829.3^AC243829.3^ENSG00000276755.1" ; exon_id "ENSE00003729306.1" ; exon_number 1 ; gene_id "NBPF10--AC243829.3^AC243829.3^ENSG00000276755.1" ; gene_name "AC243829.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188422.1" ; havana_transcript "OTTHUMT00000477172.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr17,36234447,36234554,-" ; tag basic ; transcript_id "NBPF10--AC243829.3^ENST00000622177.1" ; transcript_name "AC243829.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
NBPF10--AC243829.3 HAVANA RNA 84022 84129 . + . FI_gene_label "AC243829.3^ENSG00000276755.1" ; ID "NBPF10--AC243829.3^ENST00000622177.1" ; Parent "NBPF10--AC243829.3^AC243829.3^ENSG00000276755.1" ; exon_id "ENSE00003729306.1" ; exon_number 1 ; gene_id "NBPF10--AC243829.3^AC243829.3^ENSG00000276755.1" ; gene_name "AC243829.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188422.1" ; havana_transcript "OTTHUMT00000477172.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr17,36234447,36234554,-" ; tag basic ; transcript_id "NBPF10--AC243829.3^ENST00000622177.1" ; transcript_name "AC243829.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
OSBPL10--H3P11 HAVANA gene 39517 39916 . + . FI_gene_label "H3P11^ENSG00000230111.1" ; ID "OSBPL10--H3P11^H3P11^ENSG00000230111.1" ; exon_id "ENSE00001709673.1" ; exon_number 1 ; gene_id "OSBPL10--H3P11^H3P11^ENSG00000230111.1" ; gene_name H3P11 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000155813.1" ; havana_transcript "OTTHUMT00000341766.1" ; hgnc_id "HGNC:43803" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,31269007,31269406,+" ; tag pseudo_consens basic ; transcript_id "OSBPL10--H3P11^ENST00000427353.1" ; transcript_name "H3P11-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
OSBPL10--H3P11 HAVANA RNA 39517 39916 . + . FI_gene_label "H3P11^ENSG00000230111.1" ; ID "OSBPL10--H3P11^ENST00000427353.1" ; Parent "OSBPL10--H3P11^H3P11^ENSG00000230111.1" ; exon_id "ENSE00001709673.1" ; exon_number 1 ; gene_id "OSBPL10--H3P11^H3P11^ENSG00000230111.1" ; gene_name H3P11 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000155813.1" ; havana_transcript "OTTHUMT00000341766.1" ; hgnc_id "HGNC:43803" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,31269007,31269406,+" ; tag pseudo_consens basic ; transcript_id "OSBPL10--H3P11^ENST00000427353.1" ; transcript_name "H3P11-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
OSBPL10--THRAP3P1 HAVANA gene 39517 42579 . + . FI_gene_label "THRAP3P1^ENSG00000227339.1" ; ID "OSBPL10--THRAP3P1^THRAP3P1^ENSG00000227339.1" ; exon_id "ENSE00001777859.1" ; exon_number 1 ; gene_id "OSBPL10--THRAP3P1^THRAP3P1^ENSG00000227339.1" ; gene_name THRAP3P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000155810.1" ; havana_transcript "OTTHUMT00000341763.1" ; hgnc_id "HGNC:32386" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,31452832,31454941,+" ; tag pseudo_consens basic ; transcript_id "OSBPL10--THRAP3P1^ENST00000411753.1" ; transcript_name "THRAP3P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
OSBPL10--THRAP3P1 HAVANA RNA 39517 42579 . + . FI_gene_label "THRAP3P1^ENSG00000227339.1" ; ID "OSBPL10--THRAP3P1^ENST00000411753.1" ; Parent "OSBPL10--THRAP3P1^THRAP3P1^ENSG00000227339.1" ; exon_id "ENSE00001777859.1" ; exon_number 1 ; gene_id "OSBPL10--THRAP3P1^THRAP3P1^ENSG00000227339.1" ; gene_name THRAP3P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000155810.1" ; havana_transcript "OTTHUMT00000341763.1" ; hgnc_id "HGNC:32386" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr3,31452832,31454941,+" ; tag pseudo_consens basic ; transcript_id "OSBPL10--THRAP3P1^ENST00000411753.1" ; transcript_name "THRAP3P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
PMS2P6--CCDC146 HAVANA gene 1001 5876 . + . FI_gene_label "PMS2P6^ENSG00000174384.9" ; ID "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; exon_id "ENSE00002441642.1" ; exon_number 1 ; gene_id "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; gene_name PMS2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000157066.2" ; havana_transcript "OTTHUMT00000347345.2" ; hgnc_id "HGNC:33514" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73093657,73093796,+" ; tag basic ; transcript_id "PMS2P6--CCDC146^ENST00000333674.5" ; transcript_name "PMS2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
PMS2P6--CCDC146 HAVANA RNA 1001 5876 . + . FI_gene_label "PMS2P6^ENSG00000174384.9" ; ID "PMS2P6--CCDC146^ENST00000333674.5" ; Parent "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; exon_id "ENSE00002441642.1" ; exon_number 1 ; gene_id "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; gene_name PMS2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000157066.2" ; havana_transcript "OTTHUMT00000347345.2" ; hgnc_id "HGNC:33514" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73093657,73093796,+" ; tag basic ; transcript_id "PMS2P6--CCDC146^ENST00000333674.5" ; transcript_name "PMS2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
QKI--AL137005.1 HAVANA gene 32209 37912 . + . FI_gene_label "AL137005.1^ENSG00000235538.5" ; ID "QKI--AL137005.1^AL137005.1^ENSG00000235538.5" ; exon_id "ENSE00001767224.1" ; exon_number 1 ; gene_id "QKI--AL137005.1^AL137005.1^ENSG00000235538.5" ; gene_name "AL137005.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195978.1" ; havana_transcript "OTTHUMT00000043020.1" ; level 2 ; orig_coord_info "chr6,163703904,163704005,+" ; transcript_id "QKI--AL137005.1^ENST00000452944.1" ; transcript_name "AL137005.1-211" ; transcript_support_level 5 ; transcript_type lncRNA
QKI--AL137005.1 HAVANA RNA 32209 37912 . + . FI_gene_label "AL137005.1^ENSG00000235538.5" ; ID "QKI--AL137005.1^ENST00000452944.1" ; Parent "QKI--AL137005.1^AL137005.1^ENSG00000235538.5" ; exon_id "ENSE00001767224.1" ; exon_number 1 ; gene_id "QKI--AL137005.1^AL137005.1^ENSG00000235538.5" ; gene_name "AL137005.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195978.1" ; havana_transcript "OTTHUMT00000043020.1" ; level 2 ; orig_coord_info "chr6,163703904,163704005,+" ; transcript_id "QKI--AL137005.1^ENST00000452944.1" ; transcript_name "AL137005.1-211" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
RNF138--AF254982.1 HAVANA gene 15151 15461 . + . FI_gene_label "AF254982.1^ENSG00000276556.1" ; ID "RNF138--AF254982.1^AF254982.1^ENSG00000276556.1" ; exon_id "ENSE00003747824.1" ; exon_number 1 ; gene_id "RNF138--AF254982.1^AF254982.1^ENSG00000276556.1" ; gene_name "AF254982.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188294.1" ; havana_transcript "OTTHUMT00000476836.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr21,10640028,10640338,-" ; tag basic ; transcript_id "RNF138--AF254982.1^ENST00000611755.1" ; transcript_name "AF254982.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
RNF138--AF254982.1 HAVANA RNA 15151 15461 . + . FI_gene_label "AF254982.1^ENSG00000276556.1" ; ID "RNF138--AF254982.1^ENST00000611755.1" ; Parent "RNF138--AF254982.1^AF254982.1^ENSG00000276556.1" ; exon_id "ENSE00003747824.1" ; exon_number 1 ; gene_id "RNF138--AF254982.1^AF254982.1^ENSG00000276556.1" ; gene_name "AF254982.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000188294.1" ; havana_transcript "OTTHUMT00000476836.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr21,10640028,10640338,-" ; tag basic ; transcript_id "RNF138--AF254982.1^ENST00000611755.1" ; transcript_name "AF254982.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
RNF138--AP001464.1 HAVANA gene 15151 16473 . + . FI_gene_label "AP001464.1^ENSG00000229306.1" ; ID "RNF138--AP001464.1^AP001464.1^ENSG00000229306.1" ; exon_id "ENSE00001750426.1" ; exon_number 1 ; gene_id "RNF138--AP001464.1^AP001464.1^ENSG00000229306.1" ; gene_name "AP001464.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000074167.1" ; havana_transcript "OTTHUMT00000157562.1" ; level 2 ; orig_coord_info "chr21,13016621,13016692,-" ; tag basic ; transcript_id "RNF138--AP001464.1^ENST00000457565.1" ; transcript_name "AP001464.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
RNF138--AP001464.1 HAVANA RNA 15151 16473 . + . FI_gene_label "AP001464.1^ENSG00000229306.1" ; ID "RNF138--AP001464.1^ENST00000457565.1" ; Parent "RNF138--AP001464.1^AP001464.1^ENSG00000229306.1" ; exon_id "ENSE00001750426.1" ; exon_number 1 ; gene_id "RNF138--AP001464.1^AP001464.1^ENSG00000229306.1" ; gene_name "AP001464.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000074167.1" ; havana_transcript "OTTHUMT00000157562.1" ; level 2 ; orig_coord_info "chr21,13016621,13016692,-" ; tag basic ; transcript_id "RNF138--AP001464.1^ENST00000457565.1" ; transcript_name "AP001464.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
SUPT3H--TDRG1 HAVANA gene 29439 30987 . + . FI_gene_label "TDRG1^ENSG00000204091.8" ; ID "SUPT3H--TDRG1^TDRG1^ENSG00000204091.8" ; exon_id "ENSE00001459704.1" ; exon_number 1 ; gene_id "SUPT3H--TDRG1^TDRG1^ENSG00000204091.8" ; gene_name TDRG1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000014660.16" ; havana_transcript "OTTHUMT00000040484.1" ; hgnc_id "HGNC:43642" ; level 2 ; orig_coord_info "chr6,40378337,40378897,+" ; transcript_id "SUPT3H--TDRG1^ENST00000373170.2" ; transcript_name "TDRG1-201" ; transcript_support_level 1 ; transcript_type lncRNA
SUPT3H--TDRG1 HAVANA RNA 29439 30987 . + . FI_gene_label "TDRG1^ENSG00000204091.8" ; ID "SUPT3H--TDRG1^ENST00000373170.2" ; Parent "SUPT3H--TDRG1^TDRG1^ENSG00000204091.8" ; exon_id "ENSE00001459704.1" ; exon_number 1 ; gene_id "SUPT3H--TDRG1^TDRG1^ENSG00000204091.8" ; gene_name TDRG1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000014660.16" ; havana_transcript "OTTHUMT00000040484.1" ; hgnc_id "HGNC:43642" ; level 2 ; orig_coord_info "chr6,40378337,40378897,+" ; transcript_id "SUPT3H--TDRG1^ENST00000373170.2" ; transcript_name "TDRG1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TOX--MAILR HAVANA gene 23920 32568 . + . FI_gene_label "MAILR^ENSG00000253320.7" ; ID "TOX--MAILR^MAILR^ENSG00000253320.7" ; exon_id "ENSE00002134836.1" ; exon_number 1 ; gene_id "TOX--MAILR^MAILR^ENSG00000253320.7" ; gene_name MAILR ; gene_type lncRNA ; havana_gene "OTTHUMG00000164825.6" ; havana_transcript "OTTHUMT00000380496.1" ; hgnc_id "HGNC:51558" ; level 2 ; orig_coord_info "chr8,102925032,102925123,+" ; transcript_id "TOX--MAILR^ENST00000517389.5" ; transcript_name "MAILR-201" ; transcript_support_level 4 ; transcript_type lncRNA
TOX--MAILR HAVANA RNA 23920 32568 . + . FI_gene_label "MAILR^ENSG00000253320.7" ; ID "TOX--MAILR^ENST00000517389.5" ; Parent "TOX--MAILR^MAILR^ENSG00000253320.7" ; exon_id "ENSE00002134836.1" ; exon_number 1 ; gene_id "TOX--MAILR^MAILR^ENSG00000253320.7" ; gene_name MAILR ; gene_type lncRNA ; havana_gene "OTTHUMG00000164825.6" ; havana_transcript "OTTHUMT00000380496.1" ; hgnc_id "HGNC:51558" ; level 2 ; orig_coord_info "chr8,102925032,102925123,+" ; transcript_id "TOX--MAILR^ENST00000517389.5" ; transcript_name "MAILR-201" ; transcript_support_level 4 ; transcript_type lncRNA
1157 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
2219 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 1 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 72 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed