Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/5f13583f2c39266d5f3126fc8e3caa/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/b2ee76811447545eadbf1692a16457/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/b2ee76811447545eadbf1692a16457/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
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Processed 279000000 records
Processed 280000000 records
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Processed 349000000 records
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paired = 187180053
unpaired = 2824851
MERGED PAIRED END READS = 187180053
MATES PROCESSED = 377184957
TOTAL READS     = 190004904
DISTINCT READS  = 2.61684e+07
DISTINCT COUNTS = 1255
MAX COUNT       = 526309
COUNTS OF 1     = 5.2579e+06
MAX TERMS       = 100
OBSERVED COUNTS (526310)
1	5257896
2	2755700
3	2309618
4	2076642
5	1866791
6	1661424
7	1463170
8	1271652
9	1096508
10	939554
11	798302
12	675257
13	570705
14	479759
15	404011
16	340881
17	287287
18	242176
19	205220
20	173667
21	147989
22	126298
23	108818
24	93467
25	80714
26	69876
27	61034
28	53410
29	46915
30	41660
31	36654
32	33030
33	29123
34	26509
35	23757
36	21631
37	19510
38	17795
39	16293
40	14954
41	13834
42	12533
43	11561
44	10823
45	10000
46	9270
47	8430
48	7759
49	7261
50	6756
51	6314
52	5819
53	5339
54	4886
55	4736
56	4340
57	3983
58	3810
59	3448
60	3262
61	3046
62	2852
63	2612
64	2483
65	2281
66	2199
67	2094
68	1909
69	1859
70	1768
71	1694
72	1607
73	1516
74	1408
75	1290
76	1260
77	1182
78	1123
79	1053
80	1101
81	993
82	955
83	915
84	907
85	899
86	826
87	804
88	747
89	735
90	721
91	711
92	682
93	650
94	614
95	543
96	604
97	506
98	551
99	543
100	523
101	532
102	446
103	461
104	418
105	424
106	430
107	431
108	428
109	376
110	397
111	392
112	364
113	343
114	356
115	355
116	304
117	311
118	304
119	289
120	314
121	290
122	265
123	287
124	278
125	257
126	242
127	256
128	245
129	242
130	239
131	234
132	245
133	205
134	213
135	195
136	203
137	175
138	174
139	173
140	184
141	181
142	168
143	169
144	174
145	181
146	177
147	158
148	152
149	148
150	174
151	136
152	156
153	151
154	146
155	149
156	147
157	139
158	133
159	133
160	136
161	125
162	137
163	142
164	131
165	133
166	130
167	125
168	96
169	127
170	104
171	92
172	119
173	136
174	101
175	120
176	106
177	114
178	94
179	91
180	104
181	97
182	86
183	78
184	102
185	91
186	82
187	78
188	92
189	100
190	77
191	80
192	91
193	80
194	85
195	83
196	87
197	72
198	63
199	68
200	70
201	75
202	61
203	62
204	71
205	68
206	72
207	72
208	77
209	57
210	52
211	71
212	66
213	58
214	70
215	56
216	63
217	63
218	50
219	51
220	60
221	46
222	39
223	45
224	50
225	51
226	47
227	55
228	48
229	45
230	45
231	40
232	60
233	44
234	63
235	48
236	55
237	44
238	47
239	41
240	43
241	43
242	44
243	50
244	46
245	49
246	32
247	53
248	35
249	41
250	33
251	32
252	33
253	38
254	35
255	29
256	26
257	38
258	35
259	37
260	39
261	31
262	37
263	32
264	29
265	30
266	34
267	41
268	36
269	22
270	35
271	31
272	36
273	39
274	33
275	37
276	26
277	33
278	31
279	36
280	34
281	18
282	30
283	31
284	24
285	38
286	22
287	25
288	21
289	43
290	32
291	24
292	26
293	25
294	29
295	36
296	23
297	28
298	22
299	23
300	13
301	21
302	23
303	20
304	14
305	24
306	31
307	26
308	27
309	17
310	28
311	23
312	22
313	21
314	24
315	25
316	18
317	23
318	26
319	20
320	24
321	20
322	22
323	15
324	27
325	15
326	20
327	25
328	19
329	15
330	19
331	12
332	16
333	22
334	20
335	24
336	31
337	17
338	23
339	10
340	24
341	13
342	16
343	14
344	9
345	18
346	21
347	18
348	20
349	20
350	12
351	14
352	11
353	12
354	13
355	16
356	15
357	21
358	13
359	17
360	13
361	11
362	20
363	22
364	14
365	13
366	10
367	14
368	14
369	4
370	14
371	13
372	10
373	14
374	12
375	7
376	16
377	15
378	14
379	9
380	13
381	12
382	16
383	12
384	9
385	13
386	9
387	15
388	12
389	13
390	17
391	11
392	9
393	14
394	11
395	9
396	13
397	13
398	10
399	7
400	10
401	20
402	6
403	7
404	13
405	10
406	11
407	8
408	15
409	9
410	13
411	8
412	7
413	5
414	11
415	13
416	9
417	14
418	8
419	10
420	12
421	5
422	14
423	12
424	9
425	8
426	10
427	6
428	9
429	11
430	8
431	9
432	11
433	10
434	12
435	8
436	13
437	11
438	8
439	10
440	14
441	8
442	6
443	11
444	7
445	8
446	7
447	6
448	18
449	11
450	12
451	7
452	7
453	12
454	11
455	9
456	7
457	11
458	5
459	4
460	11
461	9
462	6
463	8
464	8
465	11
466	10
467	8
468	5
469	3
470	13
471	10
472	7
473	4
474	4
475	4
476	12
477	7
478	6
479	3
480	7
481	6
482	10
483	7
484	9
485	6
486	10
487	6
488	7
489	4
490	12
491	5
492	9
493	10
494	8
495	7
496	4
497	4
498	5
499	6
500	3
501	5
502	2
503	4
504	2
505	6
506	6
507	4
508	7
509	8
510	5
511	5
512	6
513	8
514	8
515	8
516	7
517	9
518	4
519	7
520	8
521	7
522	5
523	3
524	6
525	7
526	5
527	11
528	8
529	9
530	5
531	8
532	5
533	10
534	2
535	3
536	3
537	5
538	8
539	6
540	8
541	6
542	1
543	6
544	2
545	10
546	6
547	5
548	3
549	4
550	2
551	5
552	4
553	7
554	3
555	4
556	7
557	2
558	2
559	8
560	4
561	8
562	2
563	7
564	6
565	3
566	3
567	4
568	7
569	3
570	5
571	2
572	4
573	3
574	5
575	7
576	4
577	3
578	4
579	3
580	5
581	5
582	9
583	3
584	4
585	1
586	4
587	2
588	4
589	4
590	1
591	4
592	5
593	5
594	4
595	4
596	1
597	1
598	1
599	5
600	5
601	5
602	1
603	1
604	2
605	4
606	2
607	2
608	4
609	5
610	5
611	2
612	4
613	1
614	2
615	2
616	2
617	4
618	4
619	2
620	5
621	1
622	4
623	1
624	4
625	4
626	3
627	4
628	4
629	3
630	1
631	5
632	4
633	4
634	1
635	4
636	1
637	1
638	6
639	2
640	4
641	3
642	2
643	3
644	2
645	1
646	7
647	1
648	6
649	3
650	2
651	1
652	6
653	3
654	1
655	2
656	4
657	2
658	4
659	2
660	3
661	6
662	4
664	3
665	3
666	3
667	1
668	6
669	2
670	3
671	2
672	4
673	3
674	3
675	1
676	4
677	2
678	1
679	3
680	3
681	2
682	2
683	7
684	2
685	3
686	4
687	1
688	5
689	7
690	4
691	3
692	4
693	3
694	3
695	7
696	3
697	2
698	4
699	3
701	3
702	3
703	5
704	1
705	5
706	2
707	5
708	2
709	5
710	4
711	3
713	3
714	4
715	3
716	2
717	4
718	3
719	2
720	3
721	5
722	1
723	3
724	2
725	4
726	3
727	3
728	3
729	6
730	1
731	3
732	4
733	2
735	1
736	2
738	1
739	2
740	3
741	1
742	1
743	3
744	2
745	3
746	3
747	1
748	3
749	2
750	3
751	4
752	3
755	2
756	3
757	1
758	4
759	3
760	4
761	1
762	6
763	1
764	4
766	1
767	5
768	1
769	2
770	2
771	3
772	5
773	1
774	5
775	9
776	1
777	6
778	1
779	3
780	4
782	4
785	1
789	3
790	2
791	2
792	5
793	3
794	2
795	2
796	1
797	1
798	4
799	2
802	2
803	3
804	2
805	2
806	6
807	5
808	2
809	3
810	1
811	2
814	1
815	1
816	3
817	1
818	2
819	3
820	1
821	2
822	2
823	1
824	1
825	1
826	1
827	1
829	3
830	1
832	1
835	2
836	2
837	2
838	1
839	2
840	1
842	4
843	2
844	1
846	3
847	1
848	1
849	4
850	4
851	1
855	4
857	3
858	1
859	3
860	1
861	1
863	3
864	1
865	1
866	1
867	1
868	2
871	1
872	1
873	1
874	3
875	2
876	1
878	2
880	3
881	1
882	1
884	3
885	2
886	1
887	1
888	1
889	1
890	2
891	2
893	1
895	2
896	2
898	1
899	1
900	1
901	1
903	2
904	2
905	2
906	1
910	3
911	1
912	2
913	1
914	1
915	2
916	1
917	1
920	2
923	1
924	1
925	2
926	2
927	2
929	1
936	2
937	1
938	1
939	1
942	1
943	2
944	1
945	1
949	1
950	1
951	2
952	1
953	1
956	2
957	2
960	2
964	2
966	1
967	1
968	1
970	2
972	1
973	1
975	1
976	2
977	3
978	1
979	1
980	3
981	1
982	1
983	1
984	1
985	2
986	1
987	1
988	1
991	1
992	1
993	2
994	1
995	2
996	2
997	2
1001	1
1005	1
1006	1
1007	2
1008	2
1009	1
1010	1
1011	1
1012	2
1013	2
1014	1
1015	2
1016	1
1017	1
1018	1
1019	1
1020	1
1026	2
1027	3
1029	2
1031	1
1032	1
1034	1
1035	1
1036	1
1037	1
1042	4
1043	1
1044	2
1045	1
1046	2
1047	1
1048	1
1049	2
1052	1
1053	2
1054	1
1060	1
1061	1
1062	1
1065	1
1066	1
1067	2
1069	2
1070	2
1072	1
1077	2
1079	1
1081	2
1085	1
1086	1
1088	1
1090	2
1092	1
1093	1
1095	2
1096	1
1100	4
1104	1
1106	1
1107	1
1108	1
1113	1
1116	1
1117	2
1120	1
1123	1
1125	2
1129	2
1130	1
1132	1
1133	2
1134	1
1136	2
1139	1
1143	1
1144	2
1145	1
1147	1
1151	1
1153	2
1156	1
1161	1
1162	1
1165	1
1166	1
1167	2
1169	2
1171	1
1173	2
1176	1
1179	3
1180	1
1182	1
1188	1
1191	1
1194	1
1199	1
1201	2
1206	1
1207	1
1210	1
1211	1
1214	2
1215	1
1219	1
1222	1
1223	2
1225	2
1228	1
1231	1
1233	1
1236	2
1238	1
1239	1
1244	1
1249	1
1250	1
1259	1
1262	4
1263	1
1264	1
1271	1
1272	1
1273	1
1275	1
1276	2
1277	1
1278	1
1284	1
1286	1
1290	2
1293	1
1294	1
1295	1
1298	1
1307	1
1309	2
1311	1
1315	1
1317	1
1322	1
1327	2
1328	1
1332	1
1339	1
1342	1
1344	1
1345	1
1346	1
1348	1
1350	1
1351	1
1352	2
1355	1
1356	1
1363	1
1365	1
1366	1
1368	1
1369	1
1370	1
1373	2
1376	1
1379	1
1382	1
1383	1
1384	1
1385	1
1391	1
1393	1
1394	1
1397	2
1398	1
1403	1
1408	1
1410	1
1420	2
1427	1
1428	3
1429	3
1430	1
1433	1
1434	1
1437	1
1438	1
1441	1
1442	1
1458	1
1470	1
1474	1
1482	2
1483	1
1485	1
1486	1
1488	1
1496	1
1499	1
1502	1
1503	1
1506	1
1510	1
1519	1
1520	1
1524	1
1525	1
1529	1
1530	1
1531	2
1539	1
1542	1
1548	1
1549	1
1565	1
1568	1
1575	1
1593	1
1599	1
1617	1
1625	1
1628	1
1630	1
1631	1
1649	1
1653	1
1659	1
1680	1
1685	2
1697	1
1729	1
1734	1
1735	1
1739	1
1749	1
1784	1
1798	1
1800	1
1811	1
1818	1
1821	1
1843	1
1860	1
1861	1
1870	1
1876	1
1881	1
1885	1
1889	1
1913	1
1931	2
1939	1
1945	1
1954	1
1959	1
1961	1
1992	1
2003	1
2004	1
2005	2
2016	1
2031	1
2039	2
2045	1
2051	1
2065	1
2077	2
2084	1
2088	1
2129	1
2140	1
2150	1
2160	1
2165	1
2189	1
2208	1
2218	1
2242	1
2261	1
2270	1
2282	1
2302	1
2304	1
2308	1
2318	1
2323	1
2326	1
2334	1
2336	1
2471	1
2493	1
2501	1
2503	1
2557	1
2667	1
2671	1
2741	1
2749	1
2788	1
2800	1
2883	1
2899	1
2977	1
2995	1
3066	1
3220	1
3280	1
3319	1
3351	1
3461	1
3463	1
3579	1
3634	1
4039	1
4258	1
4834	1
5158	1
5569	1
5741	1
5746	1
6095	1
6128	1
6218	1
6730	1
7327	1
8107	1
8712	1
19183	1
526309	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
...................._................................._.............._..
........._......................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]