Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/c5c6ec3b4ced32b6e2232ad2d8c614/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/18aea75e29996fef7efa3a4486bcf7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/18aea75e29996fef7efa3a4486bcf7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/42e04b256f6f076c16c4d3442e2c10/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 167916303
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2ca847-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	167916303
Known Splicing Events:	166459042
Partial Novel Splicing Events:	893822
Novel Splicing Events:	498160
Filtered Splicing Events:	65279

Total splicing  Junctions:	351460
Known Splicing Junctions:	227993
Partial Novel Splicing Junctions:	74264
Novel Splicing Junctions:	49203

===================================================================
Create BED file ...
Create Interact file ...