Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/8c5c614ebc4fb9b2d2925ad3c5d891/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/2b1b76fb0b0da8ca6de743dc848c87/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/a4e669df4539a3a801cc0f141ab294/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/8c5c614ebc4fb9b2d2925ad3c5d891/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
PDCL--RC3H2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--LINC01347
starfusion
LHFPL5--CLPSL1
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
TVP23C--CDRT4
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
AC079781.4--ASNS
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA12
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGA12
arriba
AC015911.9--SLFN12L
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
AC092807.3--DDAH1
arriba
KLRC4--KLRK1
arriba
0%| | 0/39 [00:00<?, ?it/s]
Processing PDCL--RC3H2: 0%| | 0/39 [00:00<?, ?it/s]
Processing PDCL--RC3H2: 3%|▎ | 1/39 [00:00<00:04, 9.24it/s]
Processing TLK2P1--AC110079.1: 3%|▎ | 1/39 [00:00<00:04, 9.24it/s]
Processing TLK2P1--AC110079.1: 5%|▌ | 2/39 [00:00<00:03, 9.46it/s]
Processing TLK2--LINC01347: 5%|▌ | 2/39 [00:00<00:03, 9.46it/s]
Processing TLK2--LINC01347: 8%|▊ | 3/39 [00:00<00:03, 9.54it/s]
Processing LHFPL5--CLPSL1: 8%|▊ | 3/39 [00:00<00:03, 9.54it/s]
Processing LHFPL5--CLPSL1: 10%|█ | 4/39 [00:00<00:03, 9.57it/s]
Processing STX16--NPEPL1: 10%|█ | 4/39 [00:00<00:03, 9.57it/s]
Processing STX16--NPEPL1: 13%|█▎ | 5/39 [00:00<00:03, 9.59it/s]
Processing TVP23C--CDRT4: 13%|█▎ | 5/39 [00:00<00:03, 9.59it/s]
Processing TVP23C--CDRT4: 15%|█▌ | 6/39 [00:00<00:03, 9.60it/s]
Processing PCDHA10--PCDHAC1: 15%|█▌ | 6/39 [00:00<00:03, 9.60it/s]
Processing PCDHA10--PCDHAC1: 18%|█▊ | 7/39 [00:00<00:03, 9.61it/s]
Processing PCDHA10--PCDHAC2: 18%|█▊ | 7/39 [00:00<00:03, 9.61it/s]
Processing PCDHA10--PCDHAC2: 21%|██ | 8/39 [00:00<00:03, 9.62it/s]
Processing PCDHA10--PCDHA13: 21%|██ | 8/39 [00:00<00:03, 9.62it/s]
Processing PCDHA10--PCDHA13: 23%|██▎ | 9/39 [00:00<00:03, 9.62it/s]
Processing AC079781.4--ASNS: 23%|██▎ | 9/39 [00:00<00:03, 9.62it/s]
Processing AC079781.4--ASNS: 26%|██▌ | 10/39 [00:01<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 26%|██▌ | 10/39 [00:01<00:03, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 28%|██▊ | 11/39 [00:01<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGB6: 28%|██▊ | 11/39 [00:01<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGB6: 31%|███ | 12/39 [00:01<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 31%|███ | 12/39 [00:01<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 33%|███▎ | 13/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA11: 33%|███▎ | 13/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA11: 36%|███▌ | 14/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 36%|███▌ | 14/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 38%|███▊ | 15/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 38%|███▊ | 15/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 41%|████ | 16/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 41%|████ | 16/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 44%|████▎ | 17/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 44%|████▎ | 17/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 46%|████▌ | 18/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 46%|████▌ | 18/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 49%|████▊ | 19/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 49%|████▊ | 19/39 [00:01<00:02, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 51%|█████▏ | 20/39 [00:02<00:01, 9.64it/s]
Processing PCDHA6--PCDHAC1: 51%|█████▏ | 20/39 [00:02<00:01, 9.64it/s]
Processing PCDHA6--PCDHAC1: 54%|█████▍ | 21/39 [00:02<00:01, 9.64it/s]
Processing PCDHA6--PCDHAC2: 54%|█████▍ | 21/39 [00:02<00:01, 9.64it/s]
Processing PCDHA6--PCDHAC2: 56%|█████▋ | 22/39 [00:02<00:01, 9.64it/s]
Processing PCDHA6--PCDHA13: 56%|█████▋ | 22/39 [00:02<00:01, 9.64it/s]
Processing PCDHA6--PCDHA13: 59%|█████▉ | 23/39 [00:02<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGC5: 59%|█████▉ | 23/39 [00:02<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGC5: 62%|██████▏ | 24/39 [00:02<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGB6: 62%|██████▏ | 24/39 [00:02<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGB6: 64%|██████▍ | 25/39 [00:02<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGA8: 64%|██████▍ | 25/39 [00:02<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGA8: 67%|██████▋ | 26/39 [00:02<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGA11: 67%|██████▋ | 26/39 [00:02<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGA11: 69%|██████▉ | 27/39 [00:02<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGA9: 69%|██████▉ | 27/39 [00:02<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGA9: 72%|███████▏ | 28/39 [00:02<00:01, 9.63it/s]
Processing PCDHGA5--PCDHGA10: 72%|███████▏ | 28/39 [00:02<00:01, 9.63it/s]
Processing PCDHGA5--PCDHGA10: 74%|███████▍ | 29/39 [00:03<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGB7: 74%|███████▍ | 29/39 [00:03<00:01, 9.64it/s]
Processing PCDHGA5--PCDHGB7: 77%|███████▋ | 30/39 [00:03<00:00, 9.64it/s]
Processing PCDHGA5--PCDHGC4: 77%|███████▋ | 30/39 [00:03<00:00, 9.64it/s]
Processing PCDHGA5--PCDHGC4: 79%|███████▉ | 31/39 [00:03<00:00, 9.63it/s]
Processing PCDHGA5--PCDHGC3: 79%|███████▉ | 31/39 [00:03<00:00, 9.63it/s]
Processing PCDHGA5--PCDHGC3: 82%|████████▏ | 32/39 [00:03<00:00, 9.64it/s]
Processing PCDHGA5--PCDHGA12: 82%|████████▏ | 32/39 [00:03<00:00, 9.64it/s]
Processing PCDHGA5--PCDHGA12: 85%|████████▍ | 33/39 [00:03<00:00, 9.64it/s]
Processing AC015911.9--SLFN12L: 85%|████████▍ | 33/39 [00:03<00:00, 9.64it/s]
Processing AC015911.9--SLFN12L: 87%|████████▋ | 34/39 [00:03<00:00, 9.63it/s]
Processing PCDHA4--PCDHAC1: 87%|████████▋ | 34/39 [00:03<00:00, 9.63it/s]
Processing PCDHA4--PCDHAC1: 90%|████████▉ | 35/39 [00:03<00:00, 9.64it/s]
Processing PCDHA4--PCDHAC2: 90%|████████▉ | 35/39 [00:03<00:00, 9.64it/s]
Processing PCDHA4--PCDHAC2: 92%|█████████▏| 36/39 [00:03<00:00, 9.63it/s]
Processing PCDHA4--PCDHA13: 92%|█████████▏| 36/39 [00:03<00:00, 9.63it/s]
Processing PCDHA4--PCDHA13: 95%|█████████▍| 37/39 [00:03<00:00, 9.64it/s]
Processing AC092807.3--DDAH1: 95%|█████████▍| 37/39 [00:03<00:00, 9.64it/s]
Processing AC092807.3--DDAH1: 97%|█████████▋| 38/39 [00:03<00:00, 9.64it/s]
Processing KLRC4--KLRK1: 97%|█████████▋| 38/39 [00:03<00:00, 9.64it/s]
Processing KLRC4--KLRK1: 100%|██████████| 39/39 [00:04<00:00, 9.64it/s]
Processing KLRC4--KLRK1: 100%|██████████| 39/39 [00:04<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory