Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/8c5c614ebc4fb9b2d2925ad3c5d891/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/2b1b76fb0b0da8ca6de743dc848c87/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/a4e669df4539a3a801cc0f141ab294/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/8c5c614ebc4fb9b2d2925ad3c5d891/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
PDCL--RC3H2
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--LINC01347
starfusion
LHFPL5--CLPSL1
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
TVP23C--CDRT4
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
AC079781.4--ASNS
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA12
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGA12
arriba
AC015911.9--SLFN12L
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
AC092807.3--DDAH1
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/39 [00:00<?, ?it/s]
Processing PDCL--RC3H2:   0%|          | 0/39 [00:00<?, ?it/s]
Processing PDCL--RC3H2:   3%|▎         | 1/39 [00:00<00:04,  9.24it/s]
Processing TLK2P1--AC110079.1:   3%|▎         | 1/39 [00:00<00:04,  9.24it/s]
Processing TLK2P1--AC110079.1:   5%|▌         | 2/39 [00:00<00:03,  9.46it/s]
Processing TLK2--LINC01347:   5%|▌         | 2/39 [00:00<00:03,  9.46it/s]   
Processing TLK2--LINC01347:   8%|▊         | 3/39 [00:00<00:03,  9.54it/s]
Processing LHFPL5--CLPSL1:   8%|▊         | 3/39 [00:00<00:03,  9.54it/s] 
Processing LHFPL5--CLPSL1:  10%|█         | 4/39 [00:00<00:03,  9.57it/s]
Processing STX16--NPEPL1:  10%|█         | 4/39 [00:00<00:03,  9.57it/s] 
Processing STX16--NPEPL1:  13%|█▎        | 5/39 [00:00<00:03,  9.59it/s]
Processing TVP23C--CDRT4:  13%|█▎        | 5/39 [00:00<00:03,  9.59it/s]
Processing TVP23C--CDRT4:  15%|█▌        | 6/39 [00:00<00:03,  9.60it/s]
Processing PCDHA10--PCDHAC1:  15%|█▌        | 6/39 [00:00<00:03,  9.60it/s]
Processing PCDHA10--PCDHAC1:  18%|█▊        | 7/39 [00:00<00:03,  9.61it/s]
Processing PCDHA10--PCDHAC2:  18%|█▊        | 7/39 [00:00<00:03,  9.61it/s]
Processing PCDHA10--PCDHAC2:  21%|██        | 8/39 [00:00<00:03,  9.62it/s]
Processing PCDHA10--PCDHA13:  21%|██        | 8/39 [00:00<00:03,  9.62it/s]
Processing PCDHA10--PCDHA13:  23%|██▎       | 9/39 [00:00<00:03,  9.62it/s]
Processing AC079781.4--ASNS:  23%|██▎       | 9/39 [00:00<00:03,  9.62it/s]
Processing AC079781.4--ASNS:  26%|██▌       | 10/39 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  26%|██▌       | 10/39 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGC5:  28%|██▊       | 11/39 [00:01<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  28%|██▊       | 11/39 [00:01<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGB6:  31%|███       | 12/39 [00:01<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGA8:  31%|███       | 12/39 [00:01<00:02,  9.63it/s]
Processing PCDHGB2--PCDHGA8:  33%|███▎      | 13/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  33%|███▎      | 13/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA11:  36%|███▌      | 14/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA9:  36%|███▌      | 14/39 [00:01<00:02,  9.64it/s] 
Processing PCDHGB2--PCDHGA9:  38%|███▊      | 15/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  38%|███▊      | 15/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA10:  41%|████      | 16/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGB7:  41%|████      | 16/39 [00:01<00:02,  9.64it/s] 
Processing PCDHGB2--PCDHGB7:  44%|████▎     | 17/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  44%|████▎     | 17/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGC4:  46%|████▌     | 18/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  46%|████▌     | 18/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGC3:  49%|████▊     | 19/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  49%|████▊     | 19/39 [00:01<00:02,  9.64it/s]
Processing PCDHGB2--PCDHGA12:  51%|█████▏    | 20/39 [00:02<00:01,  9.64it/s]
Processing PCDHA6--PCDHAC1:  51%|█████▏    | 20/39 [00:02<00:01,  9.64it/s]  
Processing PCDHA6--PCDHAC1:  54%|█████▍    | 21/39 [00:02<00:01,  9.64it/s]
Processing PCDHA6--PCDHAC2:  54%|█████▍    | 21/39 [00:02<00:01,  9.64it/s]
Processing PCDHA6--PCDHAC2:  56%|█████▋    | 22/39 [00:02<00:01,  9.64it/s]
Processing PCDHA6--PCDHA13:  56%|█████▋    | 22/39 [00:02<00:01,  9.64it/s]
Processing PCDHA6--PCDHA13:  59%|█████▉    | 23/39 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGC5:  59%|█████▉    | 23/39 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGC5:  62%|██████▏   | 24/39 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGB6:  62%|██████▏   | 24/39 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGB6:  64%|██████▍   | 25/39 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA8:  64%|██████▍   | 25/39 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA8:  67%|██████▋   | 26/39 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA11:  67%|██████▋   | 26/39 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA11:  69%|██████▉   | 27/39 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA9:  69%|██████▉   | 27/39 [00:02<00:01,  9.64it/s] 
Processing PCDHGA5--PCDHGA9:  72%|███████▏  | 28/39 [00:02<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA10:  72%|███████▏  | 28/39 [00:02<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA10:  74%|███████▍  | 29/39 [00:03<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGB7:  74%|███████▍  | 29/39 [00:03<00:01,  9.64it/s] 
Processing PCDHGA5--PCDHGB7:  77%|███████▋  | 30/39 [00:03<00:00,  9.64it/s]
Processing PCDHGA5--PCDHGC4:  77%|███████▋  | 30/39 [00:03<00:00,  9.64it/s]
Processing PCDHGA5--PCDHGC4:  79%|███████▉  | 31/39 [00:03<00:00,  9.63it/s]
Processing PCDHGA5--PCDHGC3:  79%|███████▉  | 31/39 [00:03<00:00,  9.63it/s]
Processing PCDHGA5--PCDHGC3:  82%|████████▏ | 32/39 [00:03<00:00,  9.64it/s]
Processing PCDHGA5--PCDHGA12:  82%|████████▏ | 32/39 [00:03<00:00,  9.64it/s]
Processing PCDHGA5--PCDHGA12:  85%|████████▍ | 33/39 [00:03<00:00,  9.64it/s]
Processing AC015911.9--SLFN12L:  85%|████████▍ | 33/39 [00:03<00:00,  9.64it/s]
Processing AC015911.9--SLFN12L:  87%|████████▋ | 34/39 [00:03<00:00,  9.63it/s]
Processing PCDHA4--PCDHAC1:  87%|████████▋ | 34/39 [00:03<00:00,  9.63it/s]    
Processing PCDHA4--PCDHAC1:  90%|████████▉ | 35/39 [00:03<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC2:  90%|████████▉ | 35/39 [00:03<00:00,  9.64it/s]
Processing PCDHA4--PCDHAC2:  92%|█████████▏| 36/39 [00:03<00:00,  9.63it/s]
Processing PCDHA4--PCDHA13:  92%|█████████▏| 36/39 [00:03<00:00,  9.63it/s]
Processing PCDHA4--PCDHA13:  95%|█████████▍| 37/39 [00:03<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  95%|█████████▍| 37/39 [00:03<00:00,  9.64it/s]
Processing AC092807.3--DDAH1:  97%|█████████▋| 38/39 [00:03<00:00,  9.64it/s]
Processing KLRC4--KLRK1:  97%|█████████▋| 38/39 [00:03<00:00,  9.64it/s]     
Processing KLRC4--KLRK1: 100%|██████████| 39/39 [00:04<00:00,  9.64it/s]
Processing KLRC4--KLRK1: 100%|██████████| 39/39 [00:04<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory