#!/bin/bash -euo pipefail
draw_fusions.R \
    --fusions=aih-tih-sc-06a169-R1_A23WJ53LT4_1.FusionInspector.fusions.tsv \
    --alignments=aih-tih-sc-06a169-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam \
    --output=aih-tih-sc-06a169-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf \
    --annotation=ref_annot.gtf \
     --cytobands=cytobands_hg38_GRCh38_v2.4.0.tsv \
    --proteinDomains=protein_domains_hg38_GRCh38_v2.4.0.gff3 \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:ARRIBA_VISUALISATION":
    arriba: $(arriba -h | grep 'Version:' 2>&1 |  sed 's/Version: //')
END_VERSIONS