Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/db55d94806ce027654295fd462ff00/aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/d52cc333143df4c007a2e5abf3ab77/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/d52cc333143df4c007a2e5abf3ab77/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e0a310d4e4d61dccb20b929125f612/aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 332652140
[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-2905df-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	332652140
Known Splicing Events:	328926848
Partial Novel Splicing Events:	1703299
Novel Splicing Events:	1922496
Filtered Splicing Events:	99497

Total splicing  Junctions:	549085
Known Splicing Junctions:	258032
Partial Novel Splicing Junctions:	156097
Novel Splicing Junctions:	134956

===================================================================
Create BED file ...
Create Interact file ...