File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/ff482f719378a042a1d8d7c4e36761/.command.log
Size
5.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (aih-tih-sc-06a169-R1_A23WJ53LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/5eac37729bf3fcd3efaa1473c0f346/aih-tih-sc-06a169-R1_A23WJ53LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/48/a612dbae0d30098322af97dac14b63/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/458433b93715e01b64c4708b558968/aih-tih-sc-06a169-R1_A23WJ53LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/ff482f719378a042a1d8d7c4e36761/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/ff482f719378a042a1d8d7c4e36761/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
PRPF8--BEST1
starfusion
arriba
TP53--CLDN7
starfusion
arriba
GOLPH3--PDZD2
starfusion
arriba
SH3GLB2--CDC27
starfusion
arriba
CHMP4B--LINC02219
starfusion
STX16--NPEPL1
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
SLC39A11--LINC00511
starfusion
arriba
ARHGEF10L--NKAIN1
starfusion
arriba
GUCY1B2--NKAIN2
starfusion
ARHGEF10L--DLGAP3
arriba
CDC27--RNY1P8
arriba
CDC27--AL162376.1
arriba
PAX7--ARHGEF10L
arriba
TAS1R2--ARHGEF10L
arriba
CRYZL2P--SEC16B
arriba
APPL1--LINC02531
arriba
APPL1--U3
arriba
FAM185A--DPY19L2P2
arriba

  0%|          | 0/20 [00:00<?, ?it/s]
Processing PRPF8--BEST1:   0%|          | 0/20 [00:00<?, ?it/s]
Processing PRPF8--BEST1:   5%|▌         | 1/20 [00:00<00:02,  9.07it/s]
Processing TP53--CLDN7:   5%|▌         | 1/20 [00:00<00:02,  9.07it/s] 
Processing TP53--CLDN7:  10%|█         | 2/20 [00:00<00:01,  9.37it/s]
Processing GOLPH3--PDZD2:  10%|█         | 2/20 [00:00<00:01,  9.37it/s]
Processing GOLPH3--PDZD2:  15%|█▌        | 3/20 [00:00<00:01,  9.47it/s]
Processing SH3GLB2--CDC27:  15%|█▌        | 3/20 [00:00<00:01,  9.47it/s]
Processing SH3GLB2--CDC27:  20%|██        | 4/20 [00:00<00:01,  9.49it/s]
Processing CHMP4B--LINC02219:  20%|██        | 4/20 [00:00<00:01,  9.49it/s]
Processing CHMP4B--LINC02219:  25%|██▌       | 5/20 [00:00<00:01,  9.51it/s]
Processing STX16--NPEPL1:  25%|██▌       | 5/20 [00:00<00:01,  9.51it/s]    
Processing STX16--NPEPL1:  30%|███       | 6/20 [00:00<00:01,  9.54it/s]
Processing TLK2P1--AC110079.1:  30%|███       | 6/20 [00:00<00:01,  9.54it/s]
Processing TLK2P1--AC110079.1:  35%|███▌      | 7/20 [00:00<00:01,  9.54it/s]
Processing TLK2--AC240565.1:  35%|███▌      | 7/20 [00:00<00:01,  9.54it/s]  
Processing TLK2--AC240565.1:  40%|████      | 8/20 [00:00<00:01,  9.55it/s]
Processing SLC39A11--LINC00511:  40%|████      | 8/20 [00:00<00:01,  9.55it/s]
Processing SLC39A11--LINC00511:  45%|████▌     | 9/20 [00:00<00:01,  9.55it/s]
Processing ARHGEF10L--NKAIN1:  45%|████▌     | 9/20 [00:00<00:01,  9.55it/s]  
Processing ARHGEF10L--NKAIN1:  50%|█████     | 10/20 [00:01<00:01,  9.54it/s]
Processing GUCY1B2--NKAIN2:  50%|█████     | 10/20 [00:01<00:01,  9.54it/s]  
Processing GUCY1B2--NKAIN2:  55%|█████▌    | 11/20 [00:01<00:00,  9.54it/s]
Processing ARHGEF10L--DLGAP3:  55%|█████▌    | 11/20 [00:01<00:00,  9.54it/s]
Processing ARHGEF10L--DLGAP3:  60%|██████    | 12/20 [00:01<00:00,  9.56it/s]
Processing CDC27--RNY1P8:  60%|██████    | 12/20 [00:01<00:00,  9.56it/s]    
Processing CDC27--RNY1P8:  65%|██████▌   | 13/20 [00:01<00:00,  9.55it/s]
Processing CDC27--AL162376.1:  65%|██████▌   | 13/20 [00:01<00:00,  9.55it/s]
Processing CDC27--AL162376.1:  70%|███████   | 14/20 [00:01<00:00,  9.55it/s]
Processing PAX7--ARHGEF10L:  70%|███████   | 14/20 [00:01<00:00,  9.55it/s]  
Processing PAX7--ARHGEF10L:  75%|███████▌  | 15/20 [00:01<00:00,  9.56it/s]
Processing TAS1R2--ARHGEF10L:  75%|███████▌  | 15/20 [00:01<00:00,  9.56it/s]
Processing TAS1R2--ARHGEF10L:  80%|████████  | 16/20 [00:01<00:00,  9.56it/s]
Processing CRYZL2P--SEC16B:  80%|████████  | 16/20 [00:01<00:00,  9.56it/s]  
Processing CRYZL2P--SEC16B:  85%|████████▌ | 17/20 [00:01<00:00,  9.57it/s]
Processing APPL1--LINC02531:  85%|████████▌ | 17/20 [00:01<00:00,  9.57it/s]
Processing APPL1--LINC02531:  90%|█████████ | 18/20 [00:01<00:00,  9.57it/s]
Processing APPL1--U3:  90%|█████████ | 18/20 [00:01<00:00,  9.57it/s]       
Processing APPL1--U3:  95%|█████████▌| 19/20 [00:01<00:00,  9.58it/s]
Processing FAM185A--DPY19L2P2:  95%|█████████▌| 19/20 [00:01<00:00,  9.58it/s]
Processing FAM185A--DPY19L2P2: 100%|██████████| 20/20 [00:02<00:00,  9.58it/s]
Processing FAM185A--DPY19L2P2: 100%|██████████| 20/20 [00:02<00:00,  9.54it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory