Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/11641460bba51c53a6336dfb4708de/fi_workdir/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/fe5004cb8686ab6f5268dad8075d67/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/fe5004cb8686ab6f5268dad8075d67/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 10273
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 10273
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:10273
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANKS1B--MRPL42 ENSEMBL gene 2552 9547 . + . FI_gene_label "ANKS1B^ENSG00000185046.18" ; ID "ANKS1B--MRPL42^ANKS1B^ENSG00000185046.18" ; exon_id "ENSE00003750013.1" ; exon_number 1 ; gene_id "ANKS1B--MRPL42^ANKS1B^ENSG00000185046.18" ; gene_name ANKS1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000170308.8" ; hgnc_id "HGNC:24600" ; level 3 ; orig_coord_info "chr12,99825309,99825391,-" ; protein_id "ENSP00000331381.8" ; tag basic ; transcript_id "ANKS1B--MRPL42^ENST00000329257.8" ; transcript_name "ANKS1B-201" ; transcript_support_level 5 ; transcript_type protein_coding
ANKS1B--MRPL42 ENSEMBL mRNA 2552 9547 . + . FI_gene_label "ANKS1B^ENSG00000185046.18" ; ID "ANKS1B--MRPL42^ENST00000329257.8" ; Parent "ANKS1B--MRPL42^ANKS1B^ENSG00000185046.18" ; exon_id "ENSE00003750013.1" ; exon_number 1 ; gene_id "ANKS1B--MRPL42^ANKS1B^ENSG00000185046.18" ; gene_name ANKS1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000170308.8" ; hgnc_id "HGNC:24600" ; level 3 ; orig_coord_info "chr12,99825309,99825391,-" ; protein_id "ENSP00000331381.8" ; tag basic ; transcript_id "ANKS1B--MRPL42^ENST00000329257.8" ; transcript_name "ANKS1B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ANKS1B--MRPL42 HAVANA gene 54242 63590 . + . FI_gene_label "MRPL42^ENSG00000198015.14" ; ID "ANKS1B--MRPL42^MRPL42^ENSG00000198015.14" ; exon_id "ENSE00003552476.1" ; exon_number 2 ; gene_id "ANKS1B--MRPL42^MRPL42^ENSG00000198015.14" ; gene_name MRPL42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170157.4" ; havana_transcript "OTTHUMT00000407720.1" ; hgnc_id "HGNC:14493" ; level 2 ; orig_coord_info "chr12,93469286,93469355,+" ; protein_id "ENSP00000351506.3" ; transcript_id "ANKS1B--MRPL42^ENST00000358678.7" ; transcript_name "MRPL42-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
ANKS1B--MRPL42 HAVANA mRNA 54242 63590 . + . FI_gene_label "MRPL42^ENSG00000198015.14" ; ID "ANKS1B--MRPL42^ENST00000358678.7" ; Parent "ANKS1B--MRPL42^MRPL42^ENSG00000198015.14" ; exon_id "ENSE00003552476.1" ; exon_number 2 ; gene_id "ANKS1B--MRPL42^MRPL42^ENSG00000198015.14" ; gene_name MRPL42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170157.4" ; havana_transcript "OTTHUMT00000407720.1" ; hgnc_id "HGNC:14493" ; level 2 ; orig_coord_info "chr12,93469286,93469355,+" ; protein_id "ENSP00000351506.3" ; transcript_id "ANKS1B--MRPL42^ENST00000358678.7" ; transcript_name "MRPL42-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
ARID2--PTPRO HAVANA gene 33225 76765 . + . FI_gene_label "PTPRO^ENSG00000151490.15" ; ID "ARID2--PTPRO^PTPRO^ENSG00000151490.15" ; ccdsid "CCDS8675.1" ; exon_id "ENSE00002302613.2" ; exon_number 1 ; gene_id "ARID2--PTPRO^PTPRO^ENSG00000151490.15" ; gene_name PTPRO ; gene_type protein_coding ; havana_gene "OTTHUMG00000168786.6" ; havana_transcript "OTTHUMT00000401079.4" ; hgnc_id "HGNC:9678" ; level 2 ; orig_coord_info "chr12,15322727,15322801,+" ; protein_id "ENSP00000281171.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ARID2--PTPRO^ENST00000281171.9" ; transcript_name "PTPRO-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARID2--PTPRO HAVANA mRNA 33225 76765 . + . FI_gene_label "PTPRO^ENSG00000151490.15" ; ID "ARID2--PTPRO^ENST00000281171.9" ; Parent "ARID2--PTPRO^PTPRO^ENSG00000151490.15" ; ccdsid "CCDS8675.1" ; exon_id "ENSE00002302613.2" ; exon_number 1 ; gene_id "ARID2--PTPRO^PTPRO^ENSG00000151490.15" ; gene_name PTPRO ; gene_type protein_coding ; havana_gene "OTTHUMG00000168786.6" ; havana_transcript "OTTHUMT00000401079.4" ; hgnc_id "HGNC:9678" ; level 2 ; orig_coord_info "chr12,15322727,15322801,+" ; protein_id "ENSP00000281171.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ARID2--PTPRO^ENST00000281171.9" ; transcript_name "PTPRO-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARID2--PTPRO HAVANA gene 1001 29970 . + . FI_gene_label "ARID2^ENSG00000189079.17" ; ID "ARID2--PTPRO^ARID2^ENSG00000189079.17" ; ccdsid "CCDS31783.1" ; exon_id "ENSE00002363600.2" ; exon_number 1 ; gene_id "ARID2--PTPRO^ARID2^ENSG00000189079.17" ; gene_name ARID2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150487.6" ; havana_transcript "OTTHUMT00000318380.3" ; hgnc_id "HGNC:18037" ; level 2 ; orig_coord_info "chr12,45729837,45729928,+" ; protein_id "ENSP00000335044.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARID2--PTPRO^ENST00000334344.11" ; transcript_name "ARID2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARID2--PTPRO HAVANA mRNA 1001 29970 . + . FI_gene_label "ARID2^ENSG00000189079.17" ; ID "ARID2--PTPRO^ENST00000334344.11" ; Parent "ARID2--PTPRO^ARID2^ENSG00000189079.17" ; ccdsid "CCDS31783.1" ; exon_id "ENSE00002363600.2" ; exon_number 1 ; gene_id "ARID2--PTPRO^ARID2^ENSG00000189079.17" ; gene_name ARID2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150487.6" ; havana_transcript "OTTHUMT00000318380.3" ; hgnc_id "HGNC:18037" ; level 2 ; orig_coord_info "chr12,45729837,45729928,+" ; protein_id "ENSP00000335044.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARID2--PTPRO^ENST00000334344.11" ; transcript_name "ARID2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP9A--BCAS4 HAVANA gene 1063 36153 . + . FI_gene_label "ATP9A^ENSG00000054793.14" ; ID "ATP9A--BCAS4^ATP9A^ENSG00000054793.14" ; exon_id "ENSE00001455504.1" ; exon_number 1 ; gene_id "ATP9A--BCAS4^ATP9A^ENSG00000054793.14" ; gene_name ATP9A ; gene_type protein_coding ; havana_gene "OTTHUMG00000032751.4" ; havana_transcript "OTTHUMT00000079736.3" ; hgnc_id "HGNC:13540" ; level 2 ; orig_coord_info "chr20,51768302,51768324,-" ; protein_id "ENSP00000309086.5" ; tag basic ; transcript_id "ATP9A--BCAS4^ENST00000311637.9" ; transcript_name "ATP9A-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP9A--BCAS4 HAVANA mRNA 1063 36153 . + . FI_gene_label "ATP9A^ENSG00000054793.14" ; ID "ATP9A--BCAS4^ENST00000311637.9" ; Parent "ATP9A--BCAS4^ATP9A^ENSG00000054793.14" ; exon_id "ENSE00001455504.1" ; exon_number 1 ; gene_id "ATP9A--BCAS4^ATP9A^ENSG00000054793.14" ; gene_name ATP9A ; gene_type protein_coding ; havana_gene "OTTHUMG00000032751.4" ; havana_transcript "OTTHUMT00000079736.3" ; hgnc_id "HGNC:13540" ; level 2 ; orig_coord_info "chr20,51768302,51768324,-" ; protein_id "ENSP00000309086.5" ; tag basic ; transcript_id "ATP9A--BCAS4^ENST00000311637.9" ; transcript_name "ATP9A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP9A--BCAS4 HAVANA gene 39154 47464 . + . FI_gene_label "BCAS4^ENSG00000124243.18" ; ID "ATP9A--BCAS4^BCAS4^ENSG00000124243.18" ; ccdsid "CCDS33487.1" ; exon_id "ENSE00001952820.1" ; exon_number 1 ; gene_id "ATP9A--BCAS4^BCAS4^ENSG00000124243.18" ; gene_name BCAS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032735.7" ; havana_transcript "OTTHUMT00000079700.1" ; hgnc_id "HGNC:14367" ; level 2 ; orig_coord_info "chr20,50794994,50795173,+" ; protein_id "ENSP00000351642.5" ; tag basic appris_principal_2 CCDS ; transcript_id "ATP9A--BCAS4^ENST00000358791.9" ; transcript_name "BCAS4-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP9A--BCAS4 HAVANA mRNA 39154 47464 . + . FI_gene_label "BCAS4^ENSG00000124243.18" ; ID "ATP9A--BCAS4^ENST00000358791.9" ; Parent "ATP9A--BCAS4^BCAS4^ENSG00000124243.18" ; ccdsid "CCDS33487.1" ; exon_id "ENSE00001952820.1" ; exon_number 1 ; gene_id "ATP9A--BCAS4^BCAS4^ENSG00000124243.18" ; gene_name BCAS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032735.7" ; havana_transcript "OTTHUMT00000079700.1" ; hgnc_id "HGNC:14367" ; level 2 ; orig_coord_info "chr20,50794994,50795173,+" ; protein_id "ENSP00000351642.5" ; tag basic appris_principal_2 CCDS ; transcript_id "ATP9A--BCAS4^ENST00000358791.9" ; transcript_name "BCAS4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAZ1B--MLXIPL HAVANA gene 27705 38568 . + . FI_gene_label "MLXIPL^ENSG00000009950.16" ; ID "BAZ1B--MLXIPL^MLXIPL^ENSG00000009950.16" ; ccdsid "CCDS5553.1" ; exon_id "ENSE00003844757.1" ; exon_number 1 ; gene_id "BAZ1B--MLXIPL^MLXIPL^ENSG00000009950.16" ; gene_name MLXIPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000129995.8" ; havana_transcript "OTTHUMT00000252262.2" ; hgnc_id "HGNC:12744" ; level 2 ; orig_coord_info "chr7,73624200,73624492,-" ; protein_id "ENSP00000320886.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BAZ1B--MLXIPL^ENST00000313375.8" ; transcript_name "MLXIPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAZ1B--MLXIPL HAVANA mRNA 27705 38568 . + . FI_gene_label "MLXIPL^ENSG00000009950.16" ; ID "BAZ1B--MLXIPL^ENST00000313375.8" ; Parent "BAZ1B--MLXIPL^MLXIPL^ENSG00000009950.16" ; ccdsid "CCDS5553.1" ; exon_id "ENSE00003844757.1" ; exon_number 1 ; gene_id "BAZ1B--MLXIPL^MLXIPL^ENSG00000009950.16" ; gene_name MLXIPL ; gene_type protein_coding ; havana_gene "OTTHUMG00000129995.8" ; havana_transcript "OTTHUMT00000252262.2" ; hgnc_id "HGNC:12744" ; level 2 ; orig_coord_info "chr7,73624200,73624492,-" ; protein_id "ENSP00000320886.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BAZ1B--MLXIPL^ENST00000313375.8" ; transcript_name "MLXIPL-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAZ1B--MLXIPL HAVANA gene 1001 24683 . + . FI_gene_label "BAZ1B^ENSG00000009954.11" ; ID "BAZ1B--MLXIPL^BAZ1B^ENSG00000009954.11" ; ccdsid "CCDS5549.1" ; exon_id "ENSE00001841762.2" ; exon_number 1 ; gene_id "BAZ1B--MLXIPL^BAZ1B^ENSG00000009954.11" ; gene_name BAZ1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000023847.6" ; havana_transcript "OTTHUMT00000252123.5" ; hgnc_id "HGNC:961" ; level 2 ; orig_coord_info "chr7,73521827,73521933,-" ; protein_id "ENSP00000342434.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAZ1B--MLXIPL^ENST00000339594.9" ; transcript_name "BAZ1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAZ1B--MLXIPL HAVANA mRNA 1001 24683 . + . FI_gene_label "BAZ1B^ENSG00000009954.11" ; ID "BAZ1B--MLXIPL^ENST00000339594.9" ; Parent "BAZ1B--MLXIPL^BAZ1B^ENSG00000009954.11" ; ccdsid "CCDS5549.1" ; exon_id "ENSE00001841762.2" ; exon_number 1 ; gene_id "BAZ1B--MLXIPL^BAZ1B^ENSG00000009954.11" ; gene_name BAZ1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000023847.6" ; havana_transcript "OTTHUMT00000252123.5" ; hgnc_id "HGNC:961" ; level 2 ; orig_coord_info "chr7,73521827,73521933,-" ; protein_id "ENSP00000342434.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAZ1B--MLXIPL^ENST00000339594.9" ; transcript_name "BAZ1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLIP1--AC018653.1 HAVANA gene 5221 43185 . + . FI_gene_label "CLIP1^ENSG00000130779.22" ; ID "CLIP1--AC018653.1^CLIP1^ENSG00000130779.22" ; ccdsid "CCDS9232.1" ; exon_id "ENSE00002207766.1" ; exon_number 1 ; gene_id "CLIP1--AC018653.1^CLIP1^ENSG00000130779.22" ; gene_name CLIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168922.4" ; havana_transcript "OTTHUMT00000401619.1" ; hgnc_id "HGNC:10461" ; level 2 ; orig_coord_info "chr12,122380368,122380452,-" ; protein_id "ENSP00000303585.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "CLIP1--AC018653.1^ENST00000302528.11" ; transcript_name "CLIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
CLIP1--AC018653.1 HAVANA mRNA 5221 43185 . + . FI_gene_label "CLIP1^ENSG00000130779.22" ; ID "CLIP1--AC018653.1^ENST00000302528.11" ; Parent "CLIP1--AC018653.1^CLIP1^ENSG00000130779.22" ; ccdsid "CCDS9232.1" ; exon_id "ENSE00002207766.1" ; exon_number 1 ; gene_id "CLIP1--AC018653.1^CLIP1^ENSG00000130779.22" ; gene_name CLIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168922.4" ; havana_transcript "OTTHUMT00000401619.1" ; hgnc_id "HGNC:10461" ; level 2 ; orig_coord_info "chr12,122380368,122380452,-" ; protein_id "ENSP00000303585.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "CLIP1--AC018653.1^ENST00000302528.11" ; transcript_name "CLIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CLIP1--CLSTN3 HAVANA gene 46861 65220 . + . FI_gene_label "CLSTN3^ENSG00000139182.15" ; ID "CLIP1--CLSTN3^CLSTN3^ENSG00000139182.15" ; ccdsid "CCDS8575.1" ; exon_id "ENSE00001247211.8" ; exon_number 1 ; gene_id "CLIP1--CLSTN3^CLSTN3^ENSG00000139182.15" ; gene_name CLSTN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168167.5" ; havana_transcript "OTTHUMT00000398560.3" ; hgnc_id "HGNC:18371" ; level 2 ; orig_coord_info "chr12,7130649,7130712,+" ; protein_id "ENSP00000266546.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLIP1--CLSTN3^ENST00000266546.11" ; transcript_name "CLSTN3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLIP1--CLSTN3 HAVANA mRNA 46861 65220 . + . FI_gene_label "CLSTN3^ENSG00000139182.15" ; ID "CLIP1--CLSTN3^ENST00000266546.11" ; Parent "CLIP1--CLSTN3^CLSTN3^ENSG00000139182.15" ; ccdsid "CCDS8575.1" ; exon_id "ENSE00001247211.8" ; exon_number 1 ; gene_id "CLIP1--CLSTN3^CLSTN3^ENSG00000139182.15" ; gene_name CLSTN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168167.5" ; havana_transcript "OTTHUMT00000398560.3" ; hgnc_id "HGNC:18371" ; level 2 ; orig_coord_info "chr12,7130649,7130712,+" ; protein_id "ENSP00000266546.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLIP1--CLSTN3^ENST00000266546.11" ; transcript_name "CLSTN3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLIP1--CLSTN3 HAVANA gene 5221 43185 . + . FI_gene_label "CLIP1^ENSG00000130779.22" ; ID "CLIP1--CLSTN3^CLIP1^ENSG00000130779.22" ; ccdsid "CCDS9232.1" ; exon_id "ENSE00002207766.1" ; exon_number 1 ; gene_id "CLIP1--CLSTN3^CLIP1^ENSG00000130779.22" ; gene_name CLIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168922.4" ; havana_transcript "OTTHUMT00000401619.1" ; hgnc_id "HGNC:10461" ; level 2 ; orig_coord_info "chr12,122380368,122380452,-" ; protein_id "ENSP00000303585.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "CLIP1--CLSTN3^ENST00000302528.11" ; transcript_name "CLIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
CLIP1--CLSTN3 HAVANA mRNA 5221 43185 . + . FI_gene_label "CLIP1^ENSG00000130779.22" ; ID "CLIP1--CLSTN3^ENST00000302528.11" ; Parent "CLIP1--CLSTN3^CLIP1^ENSG00000130779.22" ; ccdsid "CCDS9232.1" ; exon_id "ENSE00002207766.1" ; exon_number 1 ; gene_id "CLIP1--CLSTN3^CLIP1^ENSG00000130779.22" ; gene_name CLIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168922.4" ; havana_transcript "OTTHUMT00000401619.1" ; hgnc_id "HGNC:10461" ; level 2 ; orig_coord_info "chr12,122380368,122380452,-" ; protein_id "ENSP00000303585.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "CLIP1--CLSTN3^ENST00000302528.11" ; transcript_name "CLIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CPT1A--OR9Q1 HAVANA gene 2282 28747 . + . FI_gene_label "CPT1A^ENSG00000110090.13" ; ID "CPT1A--OR9Q1^CPT1A^ENSG00000110090.13" ; ccdsid "CCDS8185.1" ; exon_id "ENSE00001200549.2" ; exon_number 2 ; gene_id "CPT1A--OR9Q1^CPT1A^ENSG00000110090.13" ; gene_name CPT1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167892.6" ; havana_transcript "OTTHUMT00000397457.3" ; hgnc_id "HGNC:2328" ; level 2 ; orig_coord_info "chr11,68815334,68815474,-" ; protein_id "ENSP00000265641.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPT1A--OR9Q1^ENST00000265641.10" ; transcript_name "CPT1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
CPT1A--OR9Q1 HAVANA mRNA 2282 28747 . + . FI_gene_label "CPT1A^ENSG00000110090.13" ; ID "CPT1A--OR9Q1^ENST00000265641.10" ; Parent "CPT1A--OR9Q1^CPT1A^ENSG00000110090.13" ; ccdsid "CCDS8185.1" ; exon_id "ENSE00001200549.2" ; exon_number 2 ; gene_id "CPT1A--OR9Q1^CPT1A^ENSG00000110090.13" ; gene_name CPT1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167892.6" ; havana_transcript "OTTHUMT00000397457.3" ; hgnc_id "HGNC:2328" ; level 2 ; orig_coord_info "chr11,68815334,68815474,-" ; protein_id "ENSP00000265641.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPT1A--OR9Q1^ENST00000265641.10" ; transcript_name "CPT1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CPT1A--OR9Q1 HAVANA gene 32011 36498 . + . FI_gene_label "OR9Q1^ENSG00000186509.4" ; ID "CPT1A--OR9Q1^OR9Q1^ENSG00000186509.4" ; ccdsid "CCDS31543.1" ; exon_id "ENSE00001107353.5" ; exon_number 3 ; gene_id "CPT1A--OR9Q1^OR9Q1^ENSG00000186509.4" ; gene_name OR9Q1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167413.2" ; havana_transcript "OTTHUMT00000394538.2" ; hgnc_id "HGNC:14724" ; level 2 ; orig_coord_info "chr11,58179445,58180374,+" ; protein_id "ENSP00000334934.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPT1A--OR9Q1^ENST00000335397.3" ; transcript_name "OR9Q1-201" ; transcript_support_level NA ; transcript_type protein_coding
CPT1A--OR9Q1 HAVANA mRNA 32011 36498 . + . FI_gene_label "OR9Q1^ENSG00000186509.4" ; ID "CPT1A--OR9Q1^ENST00000335397.3" ; Parent "CPT1A--OR9Q1^OR9Q1^ENSG00000186509.4" ; ccdsid "CCDS31543.1" ; exon_id "ENSE00001107353.5" ; exon_number 3 ; gene_id "CPT1A--OR9Q1^OR9Q1^ENSG00000186509.4" ; gene_name OR9Q1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167413.2" ; havana_transcript "OTTHUMT00000394538.2" ; hgnc_id "HGNC:14724" ; level 2 ; orig_coord_info "chr11,58179445,58180374,+" ; protein_id "ENSP00000334934.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPT1A--OR9Q1^ENST00000335397.3" ; transcript_name "OR9Q1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
CPT1A--VN2R9P HAVANA gene 2282 28747 . + . FI_gene_label "CPT1A^ENSG00000110090.13" ; ID "CPT1A--VN2R9P^CPT1A^ENSG00000110090.13" ; ccdsid "CCDS8185.1" ; exon_id "ENSE00001200549.2" ; exon_number 2 ; gene_id "CPT1A--VN2R9P^CPT1A^ENSG00000110090.13" ; gene_name CPT1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167892.6" ; havana_transcript "OTTHUMT00000397457.3" ; hgnc_id "HGNC:2328" ; level 2 ; orig_coord_info "chr11,68815334,68815474,-" ; protein_id "ENSP00000265641.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPT1A--VN2R9P^ENST00000265641.10" ; transcript_name "CPT1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
CPT1A--VN2R9P HAVANA mRNA 2282 28747 . + . FI_gene_label "CPT1A^ENSG00000110090.13" ; ID "CPT1A--VN2R9P^ENST00000265641.10" ; Parent "CPT1A--VN2R9P^CPT1A^ENSG00000110090.13" ; ccdsid "CCDS8185.1" ; exon_id "ENSE00001200549.2" ; exon_number 2 ; gene_id "CPT1A--VN2R9P^CPT1A^ENSG00000110090.13" ; gene_name CPT1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167892.6" ; havana_transcript "OTTHUMT00000397457.3" ; hgnc_id "HGNC:2328" ; level 2 ; orig_coord_info "chr11,68815334,68815474,-" ; protein_id "ENSP00000265641.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "CPT1A--VN2R9P^ENST00000265641.10" ; transcript_name "CPT1A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSE1L--BCAS1 HAVANA gene 1067 23797 . + . FI_gene_label "CSE1L^ENSG00000124207.17" ; ID "CSE1L--BCAS1^CSE1L^ENSG00000124207.17" ; ccdsid "CCDS13412.1" ; exon_id "ENSE00003673128.1" ; exon_number 2 ; gene_id "CSE1L--BCAS1^CSE1L^ENSG00000124207.17" ; gene_name CSE1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000033046.4" ; havana_transcript "OTTHUMT00000080345.3" ; hgnc_id "HGNC:2431" ; level 2 ; orig_coord_info "chr20,49058464,49058548,+" ; protein_id "ENSP00000262982.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSE1L--BCAS1^ENST00000262982.3" ; transcript_name "CSE1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSE1L--BCAS1 HAVANA mRNA 1067 23797 . + . FI_gene_label "CSE1L^ENSG00000124207.17" ; ID "CSE1L--BCAS1^ENST00000262982.3" ; Parent "CSE1L--BCAS1^CSE1L^ENSG00000124207.17" ; ccdsid "CCDS13412.1" ; exon_id "ENSE00003673128.1" ; exon_number 2 ; gene_id "CSE1L--BCAS1^CSE1L^ENSG00000124207.17" ; gene_name CSE1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000033046.4" ; havana_transcript "OTTHUMT00000080345.3" ; hgnc_id "HGNC:2431" ; level 2 ; orig_coord_info "chr20,49058464,49058548,+" ; protein_id "ENSP00000262982.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSE1L--BCAS1^ENST00000262982.3" ; transcript_name "CSE1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSE1L--BCAS1 HAVANA gene 26858 41573 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "CSE1L--BCAS1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "CSE1L--BCAS1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "CSE1L--BCAS1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSE1L--BCAS1 HAVANA mRNA 26858 41573 . + . FI_gene_label "BCAS1^ENSG00000064787.13" ; ID "CSE1L--BCAS1^ENST00000371435.6" ; Parent "CSE1L--BCAS1^BCAS1^ENSG00000064787.13" ; ccdsid "CCDS82631.1" ; exon_id "ENSE00003714232.1" ; exon_number 2 ; gene_id "CSE1L--BCAS1^BCAS1^ENSG00000064787.13" ; gene_name BCAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032772.2" ; havana_transcript "OTTHUMT00000259203.1" ; hgnc_id "HGNC:974" ; level 2 ; orig_coord_info "chr20,54058647,54058718,-" ; protein_id "ENSP00000360490.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "CSE1L--BCAS1^ENST00000371435.6" ; transcript_name "BCAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDX27--NFATC2 HAVANA gene 22494 39892 . + . FI_gene_label "NFATC2^ENSG00000101096.20" ; ID "DDX27--NFATC2^NFATC2^ENSG00000101096.20" ; ccdsid "CCDS33488.1" ; exon_id "ENSE00001455518.1" ; exon_number 1 ; gene_id "DDX27--NFATC2^NFATC2^ENSG00000101096.20" ; gene_name NFATC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032747.4" ; havana_transcript "OTTHUMT00000079729.3" ; hgnc_id "HGNC:7776" ; level 2 ; orig_coord_info "chr20,51542370,51542499,-" ; protein_id "ENSP00000360619.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "DDX27--NFATC2^ENST00000371564.8" ; transcript_name "NFATC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDX27--NFATC2 HAVANA mRNA 22494 39892 . + . FI_gene_label "NFATC2^ENSG00000101096.20" ; ID "DDX27--NFATC2^ENST00000371564.8" ; Parent "DDX27--NFATC2^NFATC2^ENSG00000101096.20" ; ccdsid "CCDS33488.1" ; exon_id "ENSE00001455518.1" ; exon_number 1 ; gene_id "DDX27--NFATC2^NFATC2^ENSG00000101096.20" ; gene_name NFATC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032747.4" ; havana_transcript "OTTHUMT00000079729.3" ; hgnc_id "HGNC:7776" ; level 2 ; orig_coord_info "chr20,51542370,51542499,-" ; protein_id "ENSP00000360619.3" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "DDX27--NFATC2^ENST00000371564.8" ; transcript_name "NFATC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDX27--NFATC2 HAVANA gene 1086 6281 . + . FI_gene_label "DDX27^ENSG00000124228.15" ; ID "DDX27--NFATC2^DDX27^ENSG00000124228.15" ; exon_id "ENSE00001870160.1" ; exon_number 1 ; gene_id "DDX27--NFATC2^DDX27^ENSG00000124228.15" ; gene_name DDX27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033072.5" ; havana_transcript "OTTHUMT00000080488.2" ; hgnc_id "HGNC:15837" ; level 2 ; orig_coord_info "chr20,49219449,49219541,+" ; protein_id "ENSP00000481808.1" ; transcript_id "DDX27--NFATC2^ENST00000462328.2" ; transcript_name "DDX27-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
DDX27--NFATC2 HAVANA mRNA 1086 6281 . + . FI_gene_label "DDX27^ENSG00000124228.15" ; ID "DDX27--NFATC2^ENST00000462328.2" ; Parent "DDX27--NFATC2^DDX27^ENSG00000124228.15" ; exon_id "ENSE00001870160.1" ; exon_number 1 ; gene_id "DDX27--NFATC2^DDX27^ENSG00000124228.15" ; gene_name DDX27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033072.5" ; havana_transcript "OTTHUMT00000080488.2" ; hgnc_id "HGNC:15837" ; level 2 ; orig_coord_info "chr20,49219449,49219541,+" ; protein_id "ENSP00000481808.1" ; transcript_id "DDX27--NFATC2^ENST00000462328.2" ; transcript_name "DDX27-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
DDX27--RPSAP1 HAVANA gene 1086 6281 . + . FI_gene_label "DDX27^ENSG00000124228.15" ; ID "DDX27--RPSAP1^DDX27^ENSG00000124228.15" ; exon_id "ENSE00001870160.1" ; exon_number 1 ; gene_id "DDX27--RPSAP1^DDX27^ENSG00000124228.15" ; gene_name DDX27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033072.5" ; havana_transcript "OTTHUMT00000080488.2" ; hgnc_id "HGNC:15837" ; level 2 ; orig_coord_info "chr20,49219449,49219541,+" ; protein_id "ENSP00000481808.1" ; transcript_id "DDX27--RPSAP1^ENST00000462328.2" ; transcript_name "DDX27-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
DDX27--RPSAP1 HAVANA mRNA 1086 6281 . + . FI_gene_label "DDX27^ENSG00000124228.15" ; ID "DDX27--RPSAP1^ENST00000462328.2" ; Parent "DDX27--RPSAP1^DDX27^ENSG00000124228.15" ; exon_id "ENSE00001870160.1" ; exon_number 1 ; gene_id "DDX27--RPSAP1^DDX27^ENSG00000124228.15" ; gene_name DDX27 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033072.5" ; havana_transcript "OTTHUMT00000080488.2" ; hgnc_id "HGNC:15837" ; level 2 ; orig_coord_info "chr20,49219449,49219541,+" ; protein_id "ENSP00000481808.1" ; transcript_id "DDX27--RPSAP1^ENST00000462328.2" ; transcript_name "DDX27-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
DPM1--DOK5 HAVANA gene 12173 22098 . + . FI_gene_label "DOK5^ENSG00000101134.12" ; ID "DPM1--DOK5^DOK5^ENSG00000101134.12" ; ccdsid "CCDS13446.1" ; exon_id "ENSE00001921899.2" ; exon_number 1 ; gene_id "DPM1--DOK5^DOK5^ENSG00000101134.12" ; gene_name DOK5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032778.3" ; havana_transcript "OTTHUMT00000079777.3" ; hgnc_id "HGNC:16173" ; level 2 ; orig_coord_info "chr20,54475947,54476012,+" ; protein_id "ENSP00000262593.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DPM1--DOK5^ENST00000262593.10" ; transcript_name "DOK5-201" ; transcript_support_level 1 ; transcript_type protein_coding
DPM1--DOK5 HAVANA mRNA 12173 22098 . + . FI_gene_label "DOK5^ENSG00000101134.12" ; ID "DPM1--DOK5^ENST00000262593.10" ; Parent "DPM1--DOK5^DOK5^ENSG00000101134.12" ; ccdsid "CCDS13446.1" ; exon_id "ENSE00001921899.2" ; exon_number 1 ; gene_id "DPM1--DOK5^DOK5^ENSG00000101134.12" ; gene_name DOK5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032778.3" ; havana_transcript "OTTHUMT00000079777.3" ; hgnc_id "HGNC:16173" ; level 2 ; orig_coord_info "chr20,54475947,54476012,+" ; protein_id "ENSP00000262593.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DPM1--DOK5^ENST00000262593.10" ; transcript_name "DOK5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DPM1--DOK5 HAVANA gene 1001 9172 . + . FI_gene_label "DPM1^ENSG00000000419.13" ; ID "DPM1--DOK5^DPM1^ENSG00000000419.13" ; ccdsid "CCDS82628.1" ; exon_id "ENSE00001891078.1" ; exon_number 1 ; gene_id "DPM1--DOK5^DPM1^ENSG00000000419.13" ; gene_name DPM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032742.2" ; havana_transcript "OTTHUMT00000079720.2" ; hgnc_id "HGNC:3005" ; level 2 ; orig_coord_info "chr20,50958363,50958523,-" ; protein_id "ENSP00000360638.4" ; tag basic CCDS ; transcript_id "DPM1--DOK5^ENST00000371582.8" ; transcript_name "DPM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DPM1--DOK5 HAVANA mRNA 1001 9172 . + . FI_gene_label "DPM1^ENSG00000000419.13" ; ID "DPM1--DOK5^ENST00000371582.8" ; Parent "DPM1--DOK5^DPM1^ENSG00000000419.13" ; ccdsid "CCDS82628.1" ; exon_id "ENSE00001891078.1" ; exon_number 1 ; gene_id "DPM1--DOK5^DPM1^ENSG00000000419.13" ; gene_name DPM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032742.2" ; havana_transcript "OTTHUMT00000079720.2" ; hgnc_id "HGNC:3005" ; level 2 ; orig_coord_info "chr20,50958363,50958523,-" ; protein_id "ENSP00000360638.4" ; tag basic CCDS ; transcript_id "DPM1--DOK5^ENST00000371582.8" ; transcript_name "DPM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DPM1--RNU4ATAC7P HAVANA gene 1001 9172 . + . FI_gene_label "DPM1^ENSG00000000419.13" ; ID "DPM1--RNU4ATAC7P^DPM1^ENSG00000000419.13" ; ccdsid "CCDS82628.1" ; exon_id "ENSE00001891078.1" ; exon_number 1 ; gene_id "DPM1--RNU4ATAC7P^DPM1^ENSG00000000419.13" ; gene_name DPM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032742.2" ; havana_transcript "OTTHUMT00000079720.2" ; hgnc_id "HGNC:3005" ; level 2 ; orig_coord_info "chr20,50958363,50958523,-" ; protein_id "ENSP00000360638.4" ; tag basic CCDS ; transcript_id "DPM1--RNU4ATAC7P^ENST00000371582.8" ; transcript_name "DPM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
DPM1--RNU4ATAC7P HAVANA mRNA 1001 9172 . + . FI_gene_label "DPM1^ENSG00000000419.13" ; ID "DPM1--RNU4ATAC7P^ENST00000371582.8" ; Parent "DPM1--RNU4ATAC7P^DPM1^ENSG00000000419.13" ; ccdsid "CCDS82628.1" ; exon_id "ENSE00001891078.1" ; exon_number 1 ; gene_id "DPM1--RNU4ATAC7P^DPM1^ENSG00000000419.13" ; gene_name DPM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032742.2" ; havana_transcript "OTTHUMT00000079720.2" ; hgnc_id "HGNC:3005" ; level 2 ; orig_coord_info "chr20,50958363,50958523,-" ; protein_id "ENSP00000360638.4" ; tag basic CCDS ; transcript_id "DPM1--RNU4ATAC7P^ENST00000371582.8" ; transcript_name "DPM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EEA1--UHRF1BP1L HAVANA gene 41856 68865 . + . FI_gene_label "UHRF1BP1L^ENSG00000111647.13" ; ID "EEA1--UHRF1BP1L^UHRF1BP1L^ENSG00000111647.13" ; ccdsid "CCDS31882.1" ; exon_id "ENSE00002390690.2" ; exon_number 1 ; gene_id "EEA1--UHRF1BP1L^UHRF1BP1L^ENSG00000111647.13" ; gene_name UHRF1BP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000170195.4" ; havana_transcript "OTTHUMT00000407875.2" ; hgnc_id "HGNC:29102" ; level 2 ; orig_coord_info "chr12,100142592,100142635,-" ; protein_id "ENSP00000279907.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "EEA1--UHRF1BP1L^ENST00000279907.12" ; transcript_name "UHRF1BP1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
EEA1--UHRF1BP1L HAVANA mRNA 41856 68865 . + . FI_gene_label "UHRF1BP1L^ENSG00000111647.13" ; ID "EEA1--UHRF1BP1L^ENST00000279907.12" ; Parent "EEA1--UHRF1BP1L^UHRF1BP1L^ENSG00000111647.13" ; ccdsid "CCDS31882.1" ; exon_id "ENSE00002390690.2" ; exon_number 1 ; gene_id "EEA1--UHRF1BP1L^UHRF1BP1L^ENSG00000111647.13" ; gene_name UHRF1BP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000170195.4" ; havana_transcript "OTTHUMT00000407875.2" ; hgnc_id "HGNC:29102" ; level 2 ; orig_coord_info "chr12,100142592,100142635,-" ; protein_id "ENSP00000279907.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "EEA1--UHRF1BP1L^ENST00000279907.12" ; transcript_name "UHRF1BP1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EEA1--UHRF1BP1L HAVANA gene 1037 38855 . + . FI_gene_label "EEA1^ENSG00000102189.17" ; ID "EEA1--UHRF1BP1L^EEA1^ENSG00000102189.17" ; ccdsid "CCDS31874.1" ; exon_id "ENSE00003541182.2" ; exon_number 1 ; gene_id "EEA1--UHRF1BP1L^EEA1^ENSG00000102189.17" ; gene_name EEA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170110.3" ; havana_transcript "OTTHUMT00000407304.2" ; hgnc_id "HGNC:3185" ; level 2 ; orig_coord_info "chr12,92929043,92929066,-" ; protein_id "ENSP00000317955.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EEA1--UHRF1BP1L^ENST00000322349.13" ; transcript_name "EEA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EEA1--UHRF1BP1L HAVANA mRNA 1037 38855 . + . FI_gene_label "EEA1^ENSG00000102189.17" ; ID "EEA1--UHRF1BP1L^ENST00000322349.13" ; Parent "EEA1--UHRF1BP1L^EEA1^ENSG00000102189.17" ; ccdsid "CCDS31874.1" ; exon_id "ENSE00003541182.2" ; exon_number 1 ; gene_id "EEA1--UHRF1BP1L^EEA1^ENSG00000102189.17" ; gene_name EEA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170110.3" ; havana_transcript "OTTHUMT00000407304.2" ; hgnc_id "HGNC:3185" ; level 2 ; orig_coord_info "chr12,92929043,92929066,-" ; protein_id "ENSP00000317955.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EEA1--UHRF1BP1L^ENST00000322349.13" ; transcript_name "EEA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ESR1--CCDC170 HAVANA gene 7250 25560 . + . FI_gene_label "ESR1^ENSG00000091831.24" ; ID "ESR1--CCDC170^ESR1^ENSG00000091831.24" ; ccdsid "CCDS5234.1" ; exon_id "ENSE00001877305.2" ; exon_number 1 ; gene_id "ESR1--CCDC170^ESR1^ENSG00000091831.24" ; gene_name ESR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016103.7" ; havana_transcript "OTTHUMT00000043308.2" ; hgnc_id "HGNC:3467" ; level 2 ; orig_coord_info "chr6,151807913,151808364,+" ; protein_id "ENSP00000206249.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--CCDC170^ENST00000206249.8" ; transcript_name "ESR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ESR1--CCDC170 HAVANA mRNA 7250 25560 . + . FI_gene_label "ESR1^ENSG00000091831.24" ; ID "ESR1--CCDC170^ENST00000206249.8" ; Parent "ESR1--CCDC170^ESR1^ENSG00000091831.24" ; ccdsid "CCDS5234.1" ; exon_id "ENSE00001877305.2" ; exon_number 1 ; gene_id "ESR1--CCDC170^ESR1^ENSG00000091831.24" ; gene_name ESR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016103.7" ; havana_transcript "OTTHUMT00000043308.2" ; hgnc_id "HGNC:3467" ; level 2 ; orig_coord_info "chr6,151807913,151808364,+" ; protein_id "ENSP00000206249.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--CCDC170^ENST00000206249.8" ; transcript_name "ESR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ESR1--CCDC170 HAVANA gene 35052 50483 . + . FI_gene_label "CCDC170^ENSG00000120262.10" ; ID "ESR1--CCDC170^CCDC170^ENSG00000120262.10" ; ccdsid "CCDS43515.1" ; exon_id "ENSE00001952106.3" ; exon_number 1 ; gene_id "ESR1--CCDC170^CCDC170^ENSG00000120262.10" ; gene_name CCDC170 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015839.3" ; havana_transcript "OTTHUMT00000042727.3" ; hgnc_id "HGNC:21177" ; level 2 ; orig_coord_info "chr6,151494129,151494185,+" ; protein_id "ENSP00000239374.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--CCDC170^ENST00000239374.8" ; transcript_name "CCDC170-201" ; transcript_support_level 1 ; transcript_type protein_coding
ESR1--CCDC170 HAVANA mRNA 35052 50483 . + . FI_gene_label "CCDC170^ENSG00000120262.10" ; ID "ESR1--CCDC170^ENST00000239374.8" ; Parent "ESR1--CCDC170^CCDC170^ENSG00000120262.10" ; ccdsid "CCDS43515.1" ; exon_id "ENSE00001952106.3" ; exon_number 1 ; gene_id "ESR1--CCDC170^CCDC170^ENSG00000120262.10" ; gene_name CCDC170 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015839.3" ; havana_transcript "OTTHUMT00000042727.3" ; hgnc_id "HGNC:21177" ; level 2 ; orig_coord_info "chr6,151494129,151494185,+" ; protein_id "ENSP00000239374.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ESR1--CCDC170^ENST00000239374.8" ; transcript_name "CCDC170-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ETV6--BORCS5 HAVANA gene 13392 15151 . + . FI_gene_label "ETV6^ENSG00000139083.11" ; ID "ETV6--BORCS5^ETV6^ENSG00000139083.11" ; exon_id "ENSE00002245284.1" ; exon_number 1 ; gene_id "ETV6--BORCS5^ETV6^ENSG00000139083.11" ; gene_name ETV6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168538.3" ; havana_transcript "OTTHUMT00000400134.1" ; hgnc_id "HGNC:3495" ; level 2 ; orig_coord_info "chr12,11885937,11886026,+" ; protein_id "ENSP00000266427.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "ETV6--BORCS5^ENST00000266427.3" ; transcript_name "ETV6-201" ; transcript_support_level 3 ; transcript_type protein_coding
ETV6--BORCS5 HAVANA mRNA 13392 15151 . + . FI_gene_label "ETV6^ENSG00000139083.11" ; ID "ETV6--BORCS5^ENST00000266427.3" ; Parent "ETV6--BORCS5^ETV6^ENSG00000139083.11" ; exon_id "ENSE00002245284.1" ; exon_number 1 ; gene_id "ETV6--BORCS5^ETV6^ENSG00000139083.11" ; gene_name ETV6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168538.3" ; havana_transcript "OTTHUMT00000400134.1" ; hgnc_id "HGNC:3495" ; level 2 ; orig_coord_info "chr12,11885937,11886026,+" ; protein_id "ENSP00000266427.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "ETV6--BORCS5^ENST00000266427.3" ; transcript_name "ETV6-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
ETV6--BORCS5 HAVANA gene 22259 26051 . + . FI_gene_label "BORCS5^ENSG00000165714.11" ; ID "ETV6--BORCS5^BORCS5^ENSG00000165714.11" ; ccdsid "CCDS81669.1" ; exon_id "ENSE00002312579.1" ; exon_number 1 ; gene_id "ETV6--BORCS5^BORCS5^ENSG00000165714.11" ; gene_name BORCS5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168542.3" ; havana_transcript "OTTHUMT00000400152.1" ; hgnc_id "HGNC:17950" ; level 2 ; orig_coord_info "chr12,12357452,12357509,+" ; protein_id "ENSP00000298571.6" ; tag basic CCDS ; transcript_id "ETV6--BORCS5^ENST00000298571.6" ; transcript_name "BORCS5-201" ; transcript_support_level 1 ; transcript_type protein_coding
ETV6--BORCS5 HAVANA mRNA 22259 26051 . + . FI_gene_label "BORCS5^ENSG00000165714.11" ; ID "ETV6--BORCS5^ENST00000298571.6" ; Parent "ETV6--BORCS5^BORCS5^ENSG00000165714.11" ; ccdsid "CCDS81669.1" ; exon_id "ENSE00002312579.1" ; exon_number 1 ; gene_id "ETV6--BORCS5^BORCS5^ENSG00000165714.11" ; gene_name BORCS5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168542.3" ; havana_transcript "OTTHUMT00000400152.1" ; hgnc_id "HGNC:17950" ; level 2 ; orig_coord_info "chr12,12357452,12357509,+" ; protein_id "ENSP00000298571.6" ; tag basic CCDS ; transcript_id "ETV6--BORCS5^ENST00000298571.6" ; transcript_name "BORCS5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FSIP1--AC013652.1 HAVANA mRNA 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^ENST00000350221.4" ; Parent "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GDPD5--AP002812.2 HAVANA gene 1001 33026 . + . FI_gene_label "GDPD5^ENSG00000158555.15" ; ID "GDPD5--AP002812.2^GDPD5^ENSG00000158555.15" ; ccdsid "CCDS8238.1" ; exon_id "ENSE00003511237.1" ; exon_number 3 ; gene_id "GDPD5--AP002812.2^GDPD5^ENSG00000158555.15" ; gene_name GDPD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165484.3" ; havana_transcript "OTTHUMT00000384409.2" ; hgnc_id "HGNC:28804" ; level 2 ; orig_coord_info "chr11,75477619,75477735,-" ; protein_id "ENSP00000337972.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GDPD5--AP002812.2^ENST00000336898.8" ; transcript_name "GDPD5-201" ; transcript_support_level 1 ; transcript_type protein_coding
GDPD5--AP002812.2 HAVANA mRNA 1001 33026 . + . FI_gene_label "GDPD5^ENSG00000158555.15" ; ID "GDPD5--AP002812.2^ENST00000336898.8" ; Parent "GDPD5--AP002812.2^GDPD5^ENSG00000158555.15" ; ccdsid "CCDS8238.1" ; exon_id "ENSE00003511237.1" ; exon_number 3 ; gene_id "GDPD5--AP002812.2^GDPD5^ENSG00000158555.15" ; gene_name GDPD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165484.3" ; havana_transcript "OTTHUMT00000384409.2" ; hgnc_id "HGNC:28804" ; level 2 ; orig_coord_info "chr11,75477619,75477735,-" ; protein_id "ENSP00000337972.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GDPD5--AP002812.2^ENST00000336898.8" ; transcript_name "GDPD5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GDPD5--RSF1 HAVANA gene 36027 67766 . + . FI_gene_label "RSF1^ENSG00000048649.13" ; ID "GDPD5--RSF1^RSF1^ENSG00000048649.13" ; ccdsid "CCDS8253.1" ; exon_id "ENSE00002199384.1" ; exon_number 1 ; gene_id "GDPD5--RSF1^RSF1^ENSG00000048649.13" ; gene_name RSF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150433.3" ; havana_transcript "OTTHUMT00000318075.2" ; hgnc_id "HGNC:18118" ; level 2 ; orig_coord_info "chr11,77820528,77820714,-" ; protein_id "ENSP00000311513.6" ; tag basic appris_principal_1 CCDS ; transcript_id "GDPD5--RSF1^ENST00000308488.10" ; transcript_name "RSF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GDPD5--RSF1 HAVANA mRNA 36027 67766 . + . FI_gene_label "RSF1^ENSG00000048649.13" ; ID "GDPD5--RSF1^ENST00000308488.10" ; Parent "GDPD5--RSF1^RSF1^ENSG00000048649.13" ; ccdsid "CCDS8253.1" ; exon_id "ENSE00002199384.1" ; exon_number 1 ; gene_id "GDPD5--RSF1^RSF1^ENSG00000048649.13" ; gene_name RSF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150433.3" ; havana_transcript "OTTHUMT00000318075.2" ; hgnc_id "HGNC:18118" ; level 2 ; orig_coord_info "chr11,77820528,77820714,-" ; protein_id "ENSP00000311513.6" ; tag basic appris_principal_1 CCDS ; transcript_id "GDPD5--RSF1^ENST00000308488.10" ; transcript_name "RSF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GDPD5--RSF1 HAVANA gene 1001 33026 . + . FI_gene_label "GDPD5^ENSG00000158555.15" ; ID "GDPD5--RSF1^GDPD5^ENSG00000158555.15" ; ccdsid "CCDS8238.1" ; exon_id "ENSE00003511237.1" ; exon_number 3 ; gene_id "GDPD5--RSF1^GDPD5^ENSG00000158555.15" ; gene_name GDPD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165484.3" ; havana_transcript "OTTHUMT00000384409.2" ; hgnc_id "HGNC:28804" ; level 2 ; orig_coord_info "chr11,75477619,75477735,-" ; protein_id "ENSP00000337972.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GDPD5--RSF1^ENST00000336898.8" ; transcript_name "GDPD5-201" ; transcript_support_level 1 ; transcript_type protein_coding
GDPD5--RSF1 HAVANA mRNA 1001 33026 . + . FI_gene_label "GDPD5^ENSG00000158555.15" ; ID "GDPD5--RSF1^ENST00000336898.8" ; Parent "GDPD5--RSF1^GDPD5^ENSG00000158555.15" ; ccdsid "CCDS8238.1" ; exon_id "ENSE00003511237.1" ; exon_number 3 ; gene_id "GDPD5--RSF1^GDPD5^ENSG00000158555.15" ; gene_name GDPD5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165484.3" ; havana_transcript "OTTHUMT00000384409.2" ; hgnc_id "HGNC:28804" ; level 2 ; orig_coord_info "chr11,75477619,75477735,-" ; protein_id "ENSP00000337972.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GDPD5--RSF1^ENST00000336898.8" ; transcript_name "GDPD5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IGHMBP2--AL445433.2 HAVANA gene 1029 24117 . + . FI_gene_label "IGHMBP2^ENSG00000132740.10" ; ID "IGHMBP2--AL445433.2^IGHMBP2^ENSG00000132740.10" ; ccdsid "CCDS8187.1" ; exon_id "ENSE00001200470.6" ; exon_number 1 ; gene_id "IGHMBP2--AL445433.2^IGHMBP2^ENSG00000132740.10" ; gene_name IGHMBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167894.2" ; havana_transcript "OTTHUMT00000396862.1" ; hgnc_id "HGNC:5542" ; level 2 ; orig_coord_info "chr11,68903953,68904038,+" ; protein_id "ENSP00000255078.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IGHMBP2--AL445433.2^ENST00000255078.8" ; transcript_name "IGHMBP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
IGHMBP2--AL445433.2 HAVANA mRNA 1029 24117 . + . FI_gene_label "IGHMBP2^ENSG00000132740.10" ; ID "IGHMBP2--AL445433.2^ENST00000255078.8" ; Parent "IGHMBP2--AL445433.2^IGHMBP2^ENSG00000132740.10" ; ccdsid "CCDS8187.1" ; exon_id "ENSE00001200470.6" ; exon_number 1 ; gene_id "IGHMBP2--AL445433.2^IGHMBP2^ENSG00000132740.10" ; gene_name IGHMBP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167894.2" ; havana_transcript "OTTHUMT00000396862.1" ; hgnc_id "HGNC:5542" ; level 2 ; orig_coord_info "chr11,68903953,68904038,+" ; protein_id "ENSP00000255078.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IGHMBP2--AL445433.2^ENST00000255078.8" ; transcript_name "IGHMBP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ITPR2--CFAP94 HAVANA gene 1414 7149 . + . FI_gene_label "ITPR2^ENSG00000123104.12" ; ID "ITPR2--CFAP94^ITPR2^ENSG00000123104.12" ; exon_id "ENSE00002282656.1" ; exon_number 1 ; gene_id "ITPR2--CFAP94^ITPR2^ENSG00000123104.12" ; gene_name ITPR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169181.5" ; havana_transcript "OTTHUMT00000402735.1" ; hgnc_id "HGNC:6181" ; level 2 ; orig_coord_info "chr12,26832690,26832781,-" ; protein_id "ENSP00000242737.5" ; tag basic ; transcript_id "ITPR2--CFAP94^ENST00000242737.5" ; transcript_name "ITPR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITPR2--CFAP94 HAVANA mRNA 1414 7149 . + . FI_gene_label "ITPR2^ENSG00000123104.12" ; ID "ITPR2--CFAP94^ENST00000242737.5" ; Parent "ITPR2--CFAP94^ITPR2^ENSG00000123104.12" ; exon_id "ENSE00002282656.1" ; exon_number 1 ; gene_id "ITPR2--CFAP94^ITPR2^ENSG00000123104.12" ; gene_name ITPR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169181.5" ; havana_transcript "OTTHUMT00000402735.1" ; hgnc_id "HGNC:6181" ; level 2 ; orig_coord_info "chr12,26832690,26832781,-" ; protein_id "ENSP00000242737.5" ; tag basic ; transcript_id "ITPR2--CFAP94^ENST00000242737.5" ; transcript_name "ITPR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ITPR2--CFAP94 HAVANA gene 70022 89868 . + . FI_gene_label "CFAP94^ENSG00000118307.20" ; ID "ITPR2--CFAP94^CFAP94^ENSG00000118307.20" ; ccdsid "CCDS41762.1" ; exon_id "ENSE00003551521.1" ; exon_number 1 ; gene_id "ITPR2--CFAP94^CFAP94^ENSG00000118307.20" ; gene_name CFAP94 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150195.8" ; havana_transcript "OTTHUMT00000316761.1" ; hgnc_id "HGNC:29599" ; level 2 ; orig_coord_info "chr12,25195076,25195078,-" ; protein_id "ENSP00000313141.9" ; tag basic appris_alternative_2 CCDS ; transcript_id "ITPR2--CFAP94^ENST00000320267.13" ; transcript_name "CFAP94-201" ; transcript_support_level 1 ; transcript_type protein_coding
ITPR2--CFAP94 HAVANA mRNA 70022 89868 . + . FI_gene_label "CFAP94^ENSG00000118307.20" ; ID "ITPR2--CFAP94^ENST00000320267.13" ; Parent "ITPR2--CFAP94^CFAP94^ENSG00000118307.20" ; ccdsid "CCDS41762.1" ; exon_id "ENSE00003551521.1" ; exon_number 1 ; gene_id "ITPR2--CFAP94^CFAP94^ENSG00000118307.20" ; gene_name CFAP94 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150195.8" ; havana_transcript "OTTHUMT00000316761.1" ; hgnc_id "HGNC:29599" ; level 2 ; orig_coord_info "chr12,25195076,25195078,-" ; protein_id "ENSP00000313141.9" ; tag basic appris_alternative_2 CCDS ; transcript_id "ITPR2--CFAP94^ENST00000320267.13" ; transcript_name "CFAP94-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM2A--AP001372.2 ENSEMBL gene 2823 29156 . + . FI_gene_label "KDM2A^ENSG00000173120.15" ; ID "KDM2A--AP001372.2^KDM2A^ENSG00000173120.15" ; exon_id "ENSE00003741868.1" ; exon_number 3 ; gene_id "KDM2A--AP001372.2^KDM2A^ENSG00000173120.15" ; gene_name KDM2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167103.3" ; hgnc_id "HGNC:13606" ; level 3 ; orig_coord_info "chr11,67180088,67180217,+" ; protein_id "ENSP00000309302.6" ; tag basic ; transcript_id "KDM2A--AP001372.2^ENST00000308783.9" ; transcript_name "KDM2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KDM2A--AP001372.2 ENSEMBL mRNA 2823 29156 . + . FI_gene_label "KDM2A^ENSG00000173120.15" ; ID "KDM2A--AP001372.2^ENST00000308783.9" ; Parent "KDM2A--AP001372.2^KDM2A^ENSG00000173120.15" ; exon_id "ENSE00003741868.1" ; exon_number 3 ; gene_id "KDM2A--AP001372.2^KDM2A^ENSG00000173120.15" ; gene_name KDM2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167103.3" ; hgnc_id "HGNC:13606" ; level 3 ; orig_coord_info "chr11,67180088,67180217,+" ; protein_id "ENSP00000309302.6" ; tag basic ; transcript_id "KDM2A--AP001372.2^ENST00000308783.9" ; transcript_name "KDM2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM2A--POLD3 HAVANA gene 35203 53213 . + . FI_gene_label "POLD3^ENSG00000077514.9" ; ID "KDM2A--POLD3^POLD3^ENSG00000077514.9" ; ccdsid "CCDS8233.1" ; exon_id "ENSE00002198152.2" ; exon_number 1 ; gene_id "KDM2A--POLD3^POLD3^ENSG00000077514.9" ; gene_name POLD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165621.4" ; havana_transcript "OTTHUMT00000385376.2" ; hgnc_id "HGNC:20932" ; level 2 ; orig_coord_info "chr11,74592659,74592718,+" ; protein_id "ENSP00000263681.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KDM2A--POLD3^ENST00000263681.7" ; transcript_name "POLD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
KDM2A--POLD3 HAVANA mRNA 35203 53213 . + . FI_gene_label "POLD3^ENSG00000077514.9" ; ID "KDM2A--POLD3^ENST00000263681.7" ; Parent "KDM2A--POLD3^POLD3^ENSG00000077514.9" ; ccdsid "CCDS8233.1" ; exon_id "ENSE00002198152.2" ; exon_number 1 ; gene_id "KDM2A--POLD3^POLD3^ENSG00000077514.9" ; gene_name POLD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165621.4" ; havana_transcript "OTTHUMT00000385376.2" ; hgnc_id "HGNC:20932" ; level 2 ; orig_coord_info "chr11,74592659,74592718,+" ; protein_id "ENSP00000263681.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KDM2A--POLD3^ENST00000263681.7" ; transcript_name "POLD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM2A--POLD3 ENSEMBL gene 2823 29156 . + . FI_gene_label "KDM2A^ENSG00000173120.15" ; ID "KDM2A--POLD3^KDM2A^ENSG00000173120.15" ; exon_id "ENSE00003741868.1" ; exon_number 3 ; gene_id "KDM2A--POLD3^KDM2A^ENSG00000173120.15" ; gene_name KDM2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167103.3" ; hgnc_id "HGNC:13606" ; level 3 ; orig_coord_info "chr11,67180088,67180217,+" ; protein_id "ENSP00000309302.6" ; tag basic ; transcript_id "KDM2A--POLD3^ENST00000308783.9" ; transcript_name "KDM2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KDM2A--POLD3 ENSEMBL mRNA 2823 29156 . + . FI_gene_label "KDM2A^ENSG00000173120.15" ; ID "KDM2A--POLD3^ENST00000308783.9" ; Parent "KDM2A--POLD3^KDM2A^ENSG00000173120.15" ; exon_id "ENSE00003741868.1" ; exon_number 3 ; gene_id "KDM2A--POLD3^KDM2A^ENSG00000173120.15" ; gene_name KDM2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000167103.3" ; hgnc_id "HGNC:13606" ; level 3 ; orig_coord_info "chr11,67180088,67180217,+" ; protein_id "ENSP00000309302.6" ; tag basic ; transcript_id "KDM2A--POLD3^ENST00000308783.9" ; transcript_name "KDM2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LDLRAD4--ZFHX3 HAVANA gene 89407 113620 . + . FI_gene_label "ZFHX3^ENSG00000140836.17" ; ID "LDLRAD4--ZFHX3^ZFHX3^ENSG00000140836.17" ; ccdsid "CCDS10908.1" ; exon_id "ENSE00001171638.5" ; exon_number 2 ; gene_id "LDLRAD4--ZFHX3^ZFHX3^ENSG00000140836.17" ; gene_name ZFHX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137599.7" ; havana_transcript "OTTHUMT00000269008.2" ; hgnc_id "HGNC:777" ; level 2 ; orig_coord_info "chr16,72957427,72960145,-" ; protein_id "ENSP00000268489.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LDLRAD4--ZFHX3^ENST00000268489.10" ; transcript_name "ZFHX3-201" ; transcript_support_level 1 ; transcript_type protein_coding
LDLRAD4--ZFHX3 HAVANA mRNA 89407 113620 . + . FI_gene_label "ZFHX3^ENSG00000140836.17" ; ID "LDLRAD4--ZFHX3^ENST00000268489.10" ; Parent "LDLRAD4--ZFHX3^ZFHX3^ENSG00000140836.17" ; ccdsid "CCDS10908.1" ; exon_id "ENSE00001171638.5" ; exon_number 2 ; gene_id "LDLRAD4--ZFHX3^ZFHX3^ENSG00000140836.17" ; gene_name ZFHX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137599.7" ; havana_transcript "OTTHUMT00000269008.2" ; hgnc_id "HGNC:777" ; level 2 ; orig_coord_info "chr16,72957427,72960145,-" ; protein_id "ENSP00000268489.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LDLRAD4--ZFHX3^ENST00000268489.10" ; transcript_name "ZFHX3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LDLRAD4--ZFHX3 HAVANA gene 5418 65757 . + . FI_gene_label "LDLRAD4^ENSG00000168675.19" ; ID "LDLRAD4--ZFHX3^LDLRAD4^ENSG00000168675.19" ; ccdsid "CCDS32793.1" ; exon_id "ENSE00001354297.2" ; exon_number 2 ; gene_id "LDLRAD4--ZFHX3^LDLRAD4^ENSG00000168675.19" ; gene_name LDLRAD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181925.5" ; havana_transcript "OTTHUMT00000458326.1" ; hgnc_id "HGNC:1224" ; level 2 ; orig_coord_info "chr18,13387723,13387762,+" ; protein_id "ENSP00000352420.5" ; tag basic appris_principal_1 CCDS ; transcript_id "LDLRAD4--ZFHX3^ENST00000359446.10" ; transcript_name "LDLRAD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
LDLRAD4--ZFHX3 HAVANA mRNA 5418 65757 . + . FI_gene_label "LDLRAD4^ENSG00000168675.19" ; ID "LDLRAD4--ZFHX3^ENST00000359446.10" ; Parent "LDLRAD4--ZFHX3^LDLRAD4^ENSG00000168675.19" ; ccdsid "CCDS32793.1" ; exon_id "ENSE00001354297.2" ; exon_number 2 ; gene_id "LDLRAD4--ZFHX3^LDLRAD4^ENSG00000168675.19" ; gene_name LDLRAD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181925.5" ; havana_transcript "OTTHUMT00000458326.1" ; hgnc_id "HGNC:1224" ; level 2 ; orig_coord_info "chr18,13387723,13387762,+" ; protein_id "ENSP00000352420.5" ; tag basic appris_principal_1 CCDS ; transcript_id "LDLRAD4--ZFHX3^ENST00000359446.10" ; transcript_name "LDLRAD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPHP3--ACAD11 HAVANA gene 34363 56719 . + . FI_gene_label "ACAD11^ENSG00000240303.8" ; ID "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; ccdsid "CCDS3074.1" ; exon_id "ENSE00001878063.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; gene_name ACAD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159780.6" ; havana_transcript "OTTHUMT00000357279.4" ; hgnc_id "HGNC:30211" ; level 2 ; orig_coord_info "chr3,132659603,132659751,-" ; protein_id "ENSP00000264990.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000264990.11" ; transcript_name "ACAD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPHP3--ACAD11 HAVANA mRNA 34363 56719 . + . FI_gene_label "ACAD11^ENSG00000240303.8" ; ID "NPHP3--ACAD11^ENST00000264990.11" ; Parent "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; ccdsid "CCDS3074.1" ; exon_id "ENSE00001878063.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; gene_name ACAD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159780.6" ; havana_transcript "OTTHUMT00000357279.4" ; hgnc_id "HGNC:30211" ; level 2 ; orig_coord_info "chr3,132659603,132659751,-" ; protein_id "ENSP00000264990.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000264990.11" ; transcript_name "ACAD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPHP3--ACAD11 HAVANA gene 1006 31089 . + . FI_gene_label "NPHP3^ENSG00000113971.20" ; ID "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; ccdsid "CCDS3078.1" ; exon_id "ENSE00001810363.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; gene_name NPHP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159713.4" ; havana_transcript "OTTHUMT00000357020.3" ; hgnc_id "HGNC:7907" ; level 2 ; orig_coord_info "chr3,132721963,132722355,-" ; protein_id "ENSP00000338766.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000337331.10" ; transcript_name "NPHP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPHP3--ACAD11 HAVANA mRNA 1006 31089 . + . FI_gene_label "NPHP3^ENSG00000113971.20" ; ID "NPHP3--ACAD11^ENST00000337331.10" ; Parent "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; ccdsid "CCDS3078.1" ; exon_id "ENSE00001810363.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; gene_name NPHP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159713.4" ; havana_transcript "OTTHUMT00000357020.3" ; hgnc_id "HGNC:7907" ; level 2 ; orig_coord_info "chr3,132721963,132722355,-" ; protein_id "ENSP00000338766.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000337331.10" ; transcript_name "NPHP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NTN4--GRIN2B HAVANA gene 1426 16689 . + . FI_gene_label "NTN4^ENSG00000074527.13" ; ID "NTN4--GRIN2B^NTN4^ENSG00000074527.13" ; ccdsid "CCDS9054.1" ; exon_id "ENSE00001192808.6" ; exon_number 1 ; gene_id "NTN4--GRIN2B^NTN4^ENSG00000074527.13" ; gene_name NTN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170290.5" ; havana_transcript "OTTHUMT00000408372.2" ; hgnc_id "HGNC:13658" ; level 2 ; orig_coord_info "chr12,95790255,95790309,-" ; protein_id "ENSP00000340998.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NTN4--GRIN2B^ENST00000343702.9" ; transcript_name "NTN4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NTN4--GRIN2B HAVANA mRNA 1426 16689 . + . FI_gene_label "NTN4^ENSG00000074527.13" ; ID "NTN4--GRIN2B^ENST00000343702.9" ; Parent "NTN4--GRIN2B^NTN4^ENSG00000074527.13" ; ccdsid "CCDS9054.1" ; exon_id "ENSE00001192808.6" ; exon_number 1 ; gene_id "NTN4--GRIN2B^NTN4^ENSG00000074527.13" ; gene_name NTN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170290.5" ; havana_transcript "OTTHUMT00000408372.2" ; hgnc_id "HGNC:13658" ; level 2 ; orig_coord_info "chr12,95790255,95790309,-" ; protein_id "ENSP00000340998.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NTN4--GRIN2B^ENST00000343702.9" ; transcript_name "NTN4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NTN4--GRIN2B HAVANA gene 20090 66937 . + . FI_gene_label "GRIN2B^ENSG00000273079.7" ; ID "NTN4--GRIN2B^GRIN2B^ENSG00000273079.7" ; ccdsid "CCDS8662.1" ; exon_id "ENSE00000993733.1" ; exon_number 3 ; gene_id "NTN4--GRIN2B^GRIN2B^ENSG00000273079.7" ; gene_name GRIN2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000137373.11" ; havana_transcript "OTTHUMT00000268014.8" ; hgnc_id "HGNC:4586" ; level 2 ; orig_coord_info "chr12,13865798,13866208,-" ; protein_id "ENSP00000477455.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "NTN4--GRIN2B^ENST00000609686.4" ; transcript_name "GRIN2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
NTN4--GRIN2B HAVANA mRNA 20090 66937 . + . FI_gene_label "GRIN2B^ENSG00000273079.7" ; ID "NTN4--GRIN2B^ENST00000609686.4" ; Parent "NTN4--GRIN2B^GRIN2B^ENSG00000273079.7" ; ccdsid "CCDS8662.1" ; exon_id "ENSE00000993733.1" ; exon_number 3 ; gene_id "NTN4--GRIN2B^GRIN2B^ENSG00000273079.7" ; gene_name GRIN2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000137373.11" ; havana_transcript "OTTHUMT00000268014.8" ; hgnc_id "HGNC:4586" ; level 2 ; orig_coord_info "chr12,13865798,13866208,-" ; protein_id "ENSP00000477455.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "NTN4--GRIN2B^ENST00000609686.4" ; transcript_name "GRIN2B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NTN4--RPL30P11 HAVANA gene 1426 16689 . + . FI_gene_label "NTN4^ENSG00000074527.13" ; ID "NTN4--RPL30P11^NTN4^ENSG00000074527.13" ; ccdsid "CCDS9054.1" ; exon_id "ENSE00001192808.6" ; exon_number 1 ; gene_id "NTN4--RPL30P11^NTN4^ENSG00000074527.13" ; gene_name NTN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170290.5" ; havana_transcript "OTTHUMT00000408372.2" ; hgnc_id "HGNC:13658" ; level 2 ; orig_coord_info "chr12,95790255,95790309,-" ; protein_id "ENSP00000340998.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NTN4--RPL30P11^ENST00000343702.9" ; transcript_name "NTN4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NTN4--RPL30P11 HAVANA mRNA 1426 16689 . + . FI_gene_label "NTN4^ENSG00000074527.13" ; ID "NTN4--RPL30P11^ENST00000343702.9" ; Parent "NTN4--RPL30P11^NTN4^ENSG00000074527.13" ; ccdsid "CCDS9054.1" ; exon_id "ENSE00001192808.6" ; exon_number 1 ; gene_id "NTN4--RPL30P11^NTN4^ENSG00000074527.13" ; gene_name NTN4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170290.5" ; havana_transcript "OTTHUMT00000408372.2" ; hgnc_id "HGNC:13658" ; level 2 ; orig_coord_info "chr12,95790255,95790309,-" ; protein_id "ENSP00000340998.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NTN4--RPL30P11^ENST00000343702.9" ; transcript_name "NTN4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OR9Q1--AQP11 HAVANA gene 9051 12885 . + . FI_gene_label "AQP11^ENSG00000178301.4" ; ID "OR9Q1--AQP11^AQP11^ENSG00000178301.4" ; ccdsid "CCDS8251.1" ; exon_id "ENSE00001212931.3" ; exon_number 1 ; gene_id "OR9Q1--AQP11^AQP11^ENSG00000178301.4" ; gene_name AQP11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165194.2" ; havana_transcript "OTTHUMT00000382582.2" ; hgnc_id "HGNC:19940" ; level 2 ; orig_coord_info "chr11,77589993,77590611,+" ; protein_id "ENSP00000318770.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OR9Q1--AQP11^ENST00000313578.4" ; transcript_name "AQP11-201" ; transcript_support_level 1 ; transcript_type protein_coding
OR9Q1--AQP11 HAVANA mRNA 9051 12885 . + . FI_gene_label "AQP11^ENSG00000178301.4" ; ID "OR9Q1--AQP11^ENST00000313578.4" ; Parent "OR9Q1--AQP11^AQP11^ENSG00000178301.4" ; ccdsid "CCDS8251.1" ; exon_id "ENSE00001212931.3" ; exon_number 1 ; gene_id "OR9Q1--AQP11^AQP11^ENSG00000178301.4" ; gene_name AQP11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165194.2" ; havana_transcript "OTTHUMT00000382582.2" ; hgnc_id "HGNC:19940" ; level 2 ; orig_coord_info "chr11,77589993,77590611,+" ; protein_id "ENSP00000318770.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OR9Q1--AQP11^ENST00000313578.4" ; transcript_name "AQP11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OR9Q1--AQP11 HAVANA gene 1001 5488 . + . FI_gene_label "OR9Q1^ENSG00000186509.4" ; ID "OR9Q1--AQP11^OR9Q1^ENSG00000186509.4" ; ccdsid "CCDS31543.1" ; exon_id "ENSE00001107353.5" ; exon_number 3 ; gene_id "OR9Q1--AQP11^OR9Q1^ENSG00000186509.4" ; gene_name OR9Q1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167413.2" ; havana_transcript "OTTHUMT00000394538.2" ; hgnc_id "HGNC:14724" ; level 2 ; orig_coord_info "chr11,58179445,58180374,+" ; protein_id "ENSP00000334934.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OR9Q1--AQP11^ENST00000335397.3" ; transcript_name "OR9Q1-201" ; transcript_support_level NA ; transcript_type protein_coding
OR9Q1--AQP11 HAVANA mRNA 1001 5488 . + . FI_gene_label "OR9Q1^ENSG00000186509.4" ; ID "OR9Q1--AQP11^ENST00000335397.3" ; Parent "OR9Q1--AQP11^OR9Q1^ENSG00000186509.4" ; ccdsid "CCDS31543.1" ; exon_id "ENSE00001107353.5" ; exon_number 3 ; gene_id "OR9Q1--AQP11^OR9Q1^ENSG00000186509.4" ; gene_name OR9Q1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167413.2" ; havana_transcript "OTTHUMT00000394538.2" ; hgnc_id "HGNC:14724" ; level 2 ; orig_coord_info "chr11,58179445,58180374,+" ; protein_id "ENSP00000334934.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OR9Q1--AQP11^ENST00000335397.3" ; transcript_name "OR9Q1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PARPBP--AMDHD1 HAVANA gene 21184 32403 . + . FI_gene_label "AMDHD1^ENSG00000139344.8" ; ID "PARPBP--AMDHD1^AMDHD1^ENSG00000139344.8" ; ccdsid "CCDS9057.1" ; exon_id "ENSE00001280254.4" ; exon_number 1 ; gene_id "PARPBP--AMDHD1^AMDHD1^ENSG00000139344.8" ; gene_name AMDHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170353.4" ; havana_transcript "OTTHUMT00000408640.3" ; hgnc_id "HGNC:28577" ; level 2 ; orig_coord_info "chr12,95943399,95943535,+" ; protein_id "ENSP00000266736.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PARPBP--AMDHD1^ENST00000266736.7" ; transcript_name "AMDHD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PARPBP--AMDHD1 HAVANA mRNA 21184 32403 . + . FI_gene_label "AMDHD1^ENSG00000139344.8" ; ID "PARPBP--AMDHD1^ENST00000266736.7" ; Parent "PARPBP--AMDHD1^AMDHD1^ENSG00000139344.8" ; ccdsid "CCDS9057.1" ; exon_id "ENSE00001280254.4" ; exon_number 1 ; gene_id "PARPBP--AMDHD1^AMDHD1^ENSG00000139344.8" ; gene_name AMDHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170353.4" ; havana_transcript "OTTHUMT00000408640.3" ; hgnc_id "HGNC:28577" ; level 2 ; orig_coord_info "chr12,95943399,95943535,+" ; protein_id "ENSP00000266736.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PARPBP--AMDHD1^ENST00000266736.7" ; transcript_name "AMDHD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PARPBP--AMDHD1 HAVANA gene 1001 18183 . + . FI_gene_label "PARPBP^ENSG00000185480.12" ; ID "PARPBP--AMDHD1^PARPBP^ENSG00000185480.12" ; ccdsid "CCDS9090.2" ; exon_id "ENSE00003490031.1" ; exon_number 2 ; gene_id "PARPBP--AMDHD1^PARPBP^ENSG00000185480.12" ; gene_name PARPBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000167923.3" ; havana_transcript "OTTHUMT00000397030.3" ; hgnc_id "HGNC:26074" ; level 2 ; orig_coord_info "chr12,102123889,102124041,+" ; protein_id "ENSP00000332915.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PARPBP--AMDHD1^ENST00000327680.7" ; transcript_name "PARPBP-201" ; transcript_support_level 2 ; transcript_type protein_coding
PARPBP--AMDHD1 HAVANA mRNA 1001 18183 . + . FI_gene_label "PARPBP^ENSG00000185480.12" ; ID "PARPBP--AMDHD1^ENST00000327680.7" ; Parent "PARPBP--AMDHD1^PARPBP^ENSG00000185480.12" ; ccdsid "CCDS9090.2" ; exon_id "ENSE00003490031.1" ; exon_number 2 ; gene_id "PARPBP--AMDHD1^PARPBP^ENSG00000185480.12" ; gene_name PARPBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000167923.3" ; havana_transcript "OTTHUMT00000397030.3" ; hgnc_id "HGNC:26074" ; level 2 ; orig_coord_info "chr12,102123889,102124041,+" ; protein_id "ENSP00000332915.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PARPBP--AMDHD1^ENST00000327680.7" ; transcript_name "PARPBP-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PPFIA1--TENM4 HAVANA gene 1001 43074 . + . FI_gene_label "PPFIA1^ENSG00000131626.19" ; ID "PPFIA1--TENM4^PPFIA1^ENSG00000131626.19" ; ccdsid "CCDS31627.1" ; exon_id "ENSE00002711464.1" ; exon_number 2 ; gene_id "PPFIA1--TENM4^PPFIA1^ENSG00000131626.19" ; gene_name PPFIA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167266.7" ; havana_transcript "OTTHUMT00000393905.1" ; hgnc_id "HGNC:9245" ; level 2 ; orig_coord_info "chr11,70272173,70272436,+" ; protein_id "ENSP00000253925.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPFIA1--TENM4^ENST00000253925.12" ; transcript_name "PPFIA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPFIA1--TENM4 HAVANA mRNA 1001 43074 . + . FI_gene_label "PPFIA1^ENSG00000131626.19" ; ID "PPFIA1--TENM4^ENST00000253925.12" ; Parent "PPFIA1--TENM4^PPFIA1^ENSG00000131626.19" ; ccdsid "CCDS31627.1" ; exon_id "ENSE00002711464.1" ; exon_number 2 ; gene_id "PPFIA1--TENM4^PPFIA1^ENSG00000131626.19" ; gene_name PPFIA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167266.7" ; havana_transcript "OTTHUMT00000393905.1" ; hgnc_id "HGNC:9245" ; level 2 ; orig_coord_info "chr11,70272173,70272436,+" ; protein_id "ENSP00000253925.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPFIA1--TENM4^ENST00000253925.12" ; transcript_name "PPFIA1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPFIA1--TENM4 HAVANA gene 46991 105686 . + . FI_gene_label "TENM4^ENSG00000149256.16" ; ID "PPFIA1--TENM4^TENM4^ENSG00000149256.16" ; ccdsid "CCDS44688.1" ; exon_id "ENSE00003465214.1" ; exon_number 5 ; gene_id "PPFIA1--TENM4^TENM4^ENSG00000149256.16" ; gene_name TENM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166770.7" ; havana_transcript "OTTHUMT00000391406.3" ; hgnc_id "HGNC:29945" ; level 2 ; orig_coord_info "chr11,79069722,79069944,-" ; protein_id "ENSP00000278550.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPFIA1--TENM4^ENST00000278550.12" ; transcript_name "TENM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PPFIA1--TENM4 HAVANA mRNA 46991 105686 . + . FI_gene_label "TENM4^ENSG00000149256.16" ; ID "PPFIA1--TENM4^ENST00000278550.12" ; Parent "PPFIA1--TENM4^TENM4^ENSG00000149256.16" ; ccdsid "CCDS44688.1" ; exon_id "ENSE00003465214.1" ; exon_number 5 ; gene_id "PPFIA1--TENM4^TENM4^ENSG00000149256.16" ; gene_name TENM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166770.7" ; havana_transcript "OTTHUMT00000391406.3" ; hgnc_id "HGNC:29945" ; level 2 ; orig_coord_info "chr11,79069722,79069944,-" ; protein_id "ENSP00000278550.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPFIA1--TENM4^ENST00000278550.12" ; transcript_name "TENM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PREX1--AL122058.1 HAVANA gene 1001 42190 . + . FI_gene_label "PREX1^ENSG00000124126.14" ; ID "PREX1--AL122058.1^PREX1^ENSG00000124126.14" ; ccdsid "CCDS13410.1" ; exon_id "ENSE00001456581.2" ; exon_number 1 ; gene_id "PREX1--AL122058.1^PREX1^ENSG00000124126.14" ; gene_name PREX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032685.5" ; havana_transcript "OTTHUMT00000079623.2" ; hgnc_id "HGNC:32594" ; level 2 ; orig_coord_info "chr20,48827642,48827860,-" ; protein_id "ENSP00000361009.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PREX1--AL122058.1^ENST00000371941.4" ; transcript_name "PREX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PREX1--AL122058.1 HAVANA mRNA 1001 42190 . + . FI_gene_label "PREX1^ENSG00000124126.14" ; ID "PREX1--AL122058.1^ENST00000371941.4" ; Parent "PREX1--AL122058.1^PREX1^ENSG00000124126.14" ; ccdsid "CCDS13410.1" ; exon_id "ENSE00001456581.2" ; exon_number 1 ; gene_id "PREX1--AL122058.1^PREX1^ENSG00000124126.14" ; gene_name PREX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032685.5" ; havana_transcript "OTTHUMT00000079623.2" ; hgnc_id "HGNC:32594" ; level 2 ; orig_coord_info "chr20,48827642,48827860,-" ; protein_id "ENSP00000361009.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PREX1--AL122058.1^ENST00000371941.4" ; transcript_name "PREX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM14--RBM4 HAVANA gene 15043 21268 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM14--RBM4^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM14--RBM4^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4 HAVANA mRNA 15043 21268 . + . FI_gene_label "RBM4^ENSG00000173933.21" ; ID "RBM14--RBM4^ENST00000310092.12" ; Parent "RBM14--RBM4^RBM4^ENSG00000173933.21" ; ccdsid "CCDS41676.1" ; exon_id "ENSE00003513724.1" ; exon_number 2 ; gene_id "RBM14--RBM4^RBM4^ENSG00000173933.21" ; gene_name RBM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154171.7" ; havana_transcript "OTTHUMT00000334210.2" ; hgnc_id "HGNC:9901" ; level 2 ; orig_coord_info "chr11,66639712,66640123,+" ; protein_id "ENSP00000309166.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310092.12" ; transcript_name "RBM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RBM14--RBM4 HAVANA gene 1005 12006 . + . FI_gene_label "RBM14^ENSG00000239306.5" ; ID "RBM14--RBM4^RBM14^ENSG00000239306.5" ; ccdsid "CCDS8147.1" ; exon_id "ENSE00003902856.1" ; exon_number 1 ; gene_id "RBM14--RBM4^RBM14^ENSG00000239306.5" ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5" ; havana_transcript "OTTHUMT00000277128.1" ; hgnc_id "HGNC:14219" ; level 2 ; orig_coord_info "chr11,66616721,66617057,+" ; protein_id "ENSP00000311747.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310137.5" ; transcript_name "RBM14-201" ; transcript_support_level 1 ; transcript_type protein_coding
RBM14--RBM4 HAVANA mRNA 1005 12006 . + . FI_gene_label "RBM14^ENSG00000239306.5" ; ID "RBM14--RBM4^ENST00000310137.5" ; Parent "RBM14--RBM4^RBM14^ENSG00000239306.5" ; ccdsid "CCDS8147.1" ; exon_id "ENSE00003902856.1" ; exon_number 1 ; gene_id "RBM14--RBM4^RBM14^ENSG00000239306.5" ; gene_name RBM14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140380.5" ; havana_transcript "OTTHUMT00000277128.1" ; hgnc_id "HGNC:14219" ; level 2 ; orig_coord_info "chr11,66616721,66617057,+" ; protein_id "ENSP00000311747.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RBM14--RBM4^ENST00000310137.5" ; transcript_name "RBM14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SARNP--LRP6 HAVANA gene 17009 48077 . + . FI_gene_label "LRP6^ENSG00000070018.9" ; ID "SARNP--LRP6^LRP6^ENSG00000070018.9" ; ccdsid "CCDS8647.1" ; exon_id "ENSE00001434043.4" ; exon_number 1 ; gene_id "SARNP--LRP6^LRP6^ENSG00000070018.9" ; gene_name LRP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168540.3" ; havana_transcript "OTTHUMT00000400137.2" ; hgnc_id "HGNC:6698" ; level 2 ; orig_coord_info "chr12,12266681,12266735,-" ; protein_id "ENSP00000261349.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SARNP--LRP6^ENST00000261349.9" ; transcript_name "LRP6-201" ; transcript_support_level 1 ; transcript_type protein_coding
SARNP--LRP6 HAVANA mRNA 17009 48077 . + . FI_gene_label "LRP6^ENSG00000070018.9" ; ID "SARNP--LRP6^ENST00000261349.9" ; Parent "SARNP--LRP6^LRP6^ENSG00000070018.9" ; ccdsid "CCDS8647.1" ; exon_id "ENSE00001434043.4" ; exon_number 1 ; gene_id "SARNP--LRP6^LRP6^ENSG00000070018.9" ; gene_name LRP6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168540.3" ; havana_transcript "OTTHUMT00000400137.2" ; hgnc_id "HGNC:6698" ; level 2 ; orig_coord_info "chr12,12266681,12266735,-" ; protein_id "ENSP00000261349.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SARNP--LRP6^ENST00000261349.9" ; transcript_name "LRP6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SARNP--LRP6 HAVANA gene 1001 12630 . + . FI_gene_label "SARNP^ENSG00000205323.9" ; ID "SARNP--LRP6^SARNP^ENSG00000205323.9" ; ccdsid "CCDS8892.1" ; exon_id "ENSE00002400242.1" ; exon_number 1 ; gene_id "SARNP--LRP6^SARNP^ENSG00000205323.9" ; gene_name SARNP ; gene_type protein_coding ; havana_gene "OTTHUMG00000170441.4" ; havana_transcript "OTTHUMT00000409159.3" ; hgnc_id "HGNC:24432" ; level 2 ; orig_coord_info "chr12,55817666,55817701,-" ; protein_id "ENSP00000337632.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SARNP--LRP6^ENST00000336133.8" ; transcript_name "SARNP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SARNP--LRP6 HAVANA mRNA 1001 12630 . + . FI_gene_label "SARNP^ENSG00000205323.9" ; ID "SARNP--LRP6^ENST00000336133.8" ; Parent "SARNP--LRP6^SARNP^ENSG00000205323.9" ; ccdsid "CCDS8892.1" ; exon_id "ENSE00002400242.1" ; exon_number 1 ; gene_id "SARNP--LRP6^SARNP^ENSG00000205323.9" ; gene_name SARNP ; gene_type protein_coding ; havana_gene "OTTHUMG00000170441.4" ; havana_transcript "OTTHUMT00000409159.3" ; hgnc_id "HGNC:24432" ; level 2 ; orig_coord_info "chr12,55817666,55817701,-" ; protein_id "ENSP00000337632.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SARNP--LRP6^ENST00000336133.8" ; transcript_name "SARNP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SARNP--RNU6-318P HAVANA gene 1001 12630 . + . FI_gene_label "SARNP^ENSG00000205323.9" ; ID "SARNP--RNU6-318P^SARNP^ENSG00000205323.9" ; ccdsid "CCDS8892.1" ; exon_id "ENSE00002400242.1" ; exon_number 1 ; gene_id "SARNP--RNU6-318P^SARNP^ENSG00000205323.9" ; gene_name SARNP ; gene_type protein_coding ; havana_gene "OTTHUMG00000170441.4" ; havana_transcript "OTTHUMT00000409159.3" ; hgnc_id "HGNC:24432" ; level 2 ; orig_coord_info "chr12,55817666,55817701,-" ; protein_id "ENSP00000337632.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SARNP--RNU6-318P^ENST00000336133.8" ; transcript_name "SARNP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SARNP--RNU6-318P HAVANA mRNA 1001 12630 . + . FI_gene_label "SARNP^ENSG00000205323.9" ; ID "SARNP--RNU6-318P^ENST00000336133.8" ; Parent "SARNP--RNU6-318P^SARNP^ENSG00000205323.9" ; ccdsid "CCDS8892.1" ; exon_id "ENSE00002400242.1" ; exon_number 1 ; gene_id "SARNP--RNU6-318P^SARNP^ENSG00000205323.9" ; gene_name SARNP ; gene_type protein_coding ; havana_gene "OTTHUMG00000170441.4" ; havana_transcript "OTTHUMT00000409159.3" ; hgnc_id "HGNC:24432" ; level 2 ; orig_coord_info "chr12,55817666,55817701,-" ; protein_id "ENSP00000337632.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SARNP--RNU6-318P^ENST00000336133.8" ; transcript_name "SARNP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SFSWAP--STAB2 HAVANA gene 1010 26771 . + . FI_gene_label "SFSWAP^ENSG00000061936.10" ; ID "SFSWAP--STAB2^SFSWAP^ENSG00000061936.10" ; ccdsid "CCDS9273.1" ; exon_id "ENSE00001192361.5" ; exon_number 1 ; gene_id "SFSWAP--STAB2^SFSWAP^ENSG00000061936.10" ; gene_name SFSWAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000168319.3" ; havana_transcript "OTTHUMT00000399276.1" ; hgnc_id "HGNC:10790" ; level 2 ; orig_coord_info "chr12,131711230,131711447,+" ; protein_id "ENSP00000261674.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SFSWAP--STAB2^ENST00000261674.9" ; transcript_name "SFSWAP-201" ; transcript_support_level 1 ; transcript_type protein_coding
SFSWAP--STAB2 HAVANA mRNA 1010 26771 . + . FI_gene_label "SFSWAP^ENSG00000061936.10" ; ID "SFSWAP--STAB2^ENST00000261674.9" ; Parent "SFSWAP--STAB2^SFSWAP^ENSG00000061936.10" ; ccdsid "CCDS9273.1" ; exon_id "ENSE00001192361.5" ; exon_number 1 ; gene_id "SFSWAP--STAB2^SFSWAP^ENSG00000061936.10" ; gene_name SFSWAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000168319.3" ; havana_transcript "OTTHUMT00000399276.1" ; hgnc_id "HGNC:10790" ; level 2 ; orig_coord_info "chr12,131711230,131711447,+" ; protein_id "ENSP00000261674.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SFSWAP--STAB2^ENST00000261674.9" ; transcript_name "SFSWAP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SFSWAP--STAB2 HAVANA gene 29772 101738 . + . FI_gene_label "STAB2^ENSG00000136011.15" ; ID "SFSWAP--STAB2^STAB2^ENSG00000136011.15" ; ccdsid "CCDS31888.1" ; exon_id "ENSE00002698916.1" ; exon_number 1 ; gene_id "SFSWAP--STAB2^STAB2^ENSG00000136011.15" ; gene_name STAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170056.2" ; havana_transcript "OTTHUMT00000407089.2" ; hgnc_id "HGNC:18629" ; level 2 ; orig_coord_info "chr12,103587477,103587557,+" ; protein_id "ENSP00000373539.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFSWAP--STAB2^ENST00000388887.7" ; transcript_name "STAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SFSWAP--STAB2 HAVANA mRNA 29772 101738 . + . FI_gene_label "STAB2^ENSG00000136011.15" ; ID "SFSWAP--STAB2^ENST00000388887.7" ; Parent "SFSWAP--STAB2^STAB2^ENSG00000136011.15" ; ccdsid "CCDS31888.1" ; exon_id "ENSE00002698916.1" ; exon_number 1 ; gene_id "SFSWAP--STAB2^STAB2^ENSG00000136011.15" ; gene_name STAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170056.2" ; havana_transcript "OTTHUMT00000407089.2" ; hgnc_id "HGNC:18629" ; level 2 ; orig_coord_info "chr12,103587477,103587557,+" ; protein_id "ENSP00000373539.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SFSWAP--STAB2^ENST00000388887.7" ; transcript_name "STAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SH2B3--ENPP7P5 HAVANA gene 1001 11261 . + . FI_gene_label "SH2B3^ENSG00000111252.11" ; ID "SH2B3--ENPP7P5^SH2B3^ENSG00000111252.11" ; ccdsid "CCDS9153.1" ; exon_id "ENSE00001378402.1" ; exon_number 2 ; gene_id "SH2B3--ENPP7P5^SH2B3^ENSG00000111252.11" ; gene_name SH2B3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169550.6" ; havana_transcript "OTTHUMT00000404779.2" ; hgnc_id "HGNC:29605" ; level 1 ; orig_coord_info "chr12,111418146,111418877,+" ; protein_id "ENSP00000345492.2" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "SH2B3--ENPP7P5^ENST00000341259.7" ; transcript_name "SH2B3-201" ; transcript_support_level 1 ; transcript_type protein_coding
SH2B3--ENPP7P5 HAVANA mRNA 1001 11261 . + . FI_gene_label "SH2B3^ENSG00000111252.11" ; ID "SH2B3--ENPP7P5^ENST00000341259.7" ; Parent "SH2B3--ENPP7P5^SH2B3^ENSG00000111252.11" ; ccdsid "CCDS9153.1" ; exon_id "ENSE00001378402.1" ; exon_number 2 ; gene_id "SH2B3--ENPP7P5^SH2B3^ENSG00000111252.11" ; gene_name SH2B3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169550.6" ; havana_transcript "OTTHUMT00000404779.2" ; hgnc_id "HGNC:29605" ; level 1 ; orig_coord_info "chr12,111418146,111418877,+" ; protein_id "ENSP00000345492.2" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "SH2B3--ENPP7P5^ENST00000341259.7" ; transcript_name "SH2B3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TSFM--OS9 HAVANA gene 14930 23883 . + . FI_gene_label "OS9^ENSG00000135506.16" ; ID "TSFM--OS9^OS9^ENSG00000135506.16" ; ccdsid "CCDS58247.1" ; exon_id "ENSE00002213208.1" ; exon_number 1 ; gene_id "TSFM--OS9^OS9^ENSG00000135506.16" ; gene_name OS9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170284.3" ; havana_transcript "OTTHUMT00000408353.1" ; hgnc_id "HGNC:16994" ; level 2 ; orig_coord_info "chr12,57694162,57694323,+" ; protein_id "ENSP00000257966.8" ; tag NAGNAG_splice_site basic appris_alternative_2 CCDS ; transcript_id "TSFM--OS9^ENST00000257966.12" ; transcript_name "OS9-201" ; transcript_support_level 2 ; transcript_type protein_coding
TSFM--OS9 HAVANA mRNA 14930 23883 . + . FI_gene_label "OS9^ENSG00000135506.16" ; ID "TSFM--OS9^ENST00000257966.12" ; Parent "TSFM--OS9^OS9^ENSG00000135506.16" ; ccdsid "CCDS58247.1" ; exon_id "ENSE00002213208.1" ; exon_number 1 ; gene_id "TSFM--OS9^OS9^ENSG00000135506.16" ; gene_name OS9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170284.3" ; havana_transcript "OTTHUMT00000408353.1" ; hgnc_id "HGNC:16994" ; level 2 ; orig_coord_info "chr12,57694162,57694323,+" ; protein_id "ENSP00000257966.8" ; tag NAGNAG_splice_site basic appris_alternative_2 CCDS ; transcript_id "TSFM--OS9^ENST00000257966.12" ; transcript_name "OS9-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TSFM--OS9 HAVANA gene 1016 8077 . + . FI_gene_label "TSFM^ENSG00000123297.20" ; ID "TSFM--OS9^TSFM^ENSG00000123297.20" ; ccdsid "CCDS53809.1" ; exon_id "ENSE00001479920.3" ; exon_number 1 ; gene_id "TSFM--OS9^TSFM^ENSG00000123297.20" ; gene_name TSFM ; gene_type protein_coding ; havana_gene "OTTHUMG00000153042.13" ; havana_transcript "OTTHUMT00000329193.1" ; hgnc_id "HGNC:12367" ; level 2 ; orig_coord_info "chr12,57782802,57782858,+" ; protein_id "ENSP00000313877.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "TSFM--OS9^ENST00000323833.12" ; transcript_name "TSFM-201" ; transcript_support_level 1 ; transcript_type protein_coding
TSFM--OS9 HAVANA mRNA 1016 8077 . + . FI_gene_label "TSFM^ENSG00000123297.20" ; ID "TSFM--OS9^ENST00000323833.12" ; Parent "TSFM--OS9^TSFM^ENSG00000123297.20" ; ccdsid "CCDS53809.1" ; exon_id "ENSE00001479920.3" ; exon_number 1 ; gene_id "TSFM--OS9^TSFM^ENSG00000123297.20" ; gene_name TSFM ; gene_type protein_coding ; havana_gene "OTTHUMG00000153042.13" ; havana_transcript "OTTHUMT00000329193.1" ; hgnc_id "HGNC:12367" ; level 2 ; orig_coord_info "chr12,57782802,57782858,+" ; protein_id "ENSP00000313877.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "TSFM--OS9^ENST00000323833.12" ; transcript_name "TSFM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1BP1L--HNRNPA1P50 HAVANA gene 1001 28010 . + . FI_gene_label "UHRF1BP1L^ENSG00000111647.13" ; ID "UHRF1BP1L--HNRNPA1P50^UHRF1BP1L^ENSG00000111647.13" ; ccdsid "CCDS31882.1" ; exon_id "ENSE00002390690.2" ; exon_number 1 ; gene_id "UHRF1BP1L--HNRNPA1P50^UHRF1BP1L^ENSG00000111647.13" ; gene_name UHRF1BP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000170195.4" ; havana_transcript "OTTHUMT00000407875.2" ; hgnc_id "HGNC:29102" ; level 2 ; orig_coord_info "chr12,100142592,100142635,-" ; protein_id "ENSP00000279907.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UHRF1BP1L--HNRNPA1P50^ENST00000279907.12" ; transcript_name "UHRF1BP1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1BP1L--HNRNPA1P50 HAVANA mRNA 1001 28010 . + . FI_gene_label "UHRF1BP1L^ENSG00000111647.13" ; ID "UHRF1BP1L--HNRNPA1P50^ENST00000279907.12" ; Parent "UHRF1BP1L--HNRNPA1P50^UHRF1BP1L^ENSG00000111647.13" ; ccdsid "CCDS31882.1" ; exon_id "ENSE00002390690.2" ; exon_number 1 ; gene_id "UHRF1BP1L--HNRNPA1P50^UHRF1BP1L^ENSG00000111647.13" ; gene_name UHRF1BP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000170195.4" ; havana_transcript "OTTHUMT00000407875.2" ; hgnc_id "HGNC:29102" ; level 2 ; orig_coord_info "chr12,100142592,100142635,-" ; protein_id "ENSP00000279907.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UHRF1BP1L--HNRNPA1P50^ENST00000279907.12" ; transcript_name "UHRF1BP1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFP91--XKR4 HAVANA gene 1001 13550 . + . FI_gene_label "ZFP91^ENSG00000186660.15" ; ID "ZFP91--XKR4^ZFP91^ENSG00000186660.15" ; ccdsid "CCDS31553.1" ; exon_id "ENSE00001933324.2" ; exon_number 1 ; gene_id "ZFP91--XKR4^ZFP91^ENSG00000186660.15" ; gene_name ZFP91 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137391.5" ; havana_transcript "OTTHUMT00000268674.2" ; hgnc_id "HGNC:14983" ; level 2 ; orig_coord_info "chr11,58579282,58579622,+" ; protein_id "ENSP00000339030.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFP91--XKR4^ENST00000316059.7" ; transcript_name "ZFP91-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZFP91--XKR4 HAVANA mRNA 1001 13550 . + . FI_gene_label "ZFP91^ENSG00000186660.15" ; ID "ZFP91--XKR4^ENST00000316059.7" ; Parent "ZFP91--XKR4^ZFP91^ENSG00000186660.15" ; ccdsid "CCDS31553.1" ; exon_id "ENSE00001933324.2" ; exon_number 1 ; gene_id "ZFP91--XKR4^ZFP91^ENSG00000186660.15" ; gene_name ZFP91 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137391.5" ; havana_transcript "OTTHUMT00000268674.2" ; hgnc_id "HGNC:14983" ; level 2 ; orig_coord_info "chr11,58579282,58579622,+" ; protein_id "ENSP00000339030.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFP91--XKR4^ENST00000316059.7" ; transcript_name "ZFP91-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFP91--XKR4 HAVANA gene 16551 39796 . + . FI_gene_label "XKR4^ENSG00000206579.9" ; ID "ZFP91--XKR4^XKR4^ENSG00000206579.9" ; ccdsid "CCDS34893.1" ; exon_id "ENSE00001329870.6" ; exon_number 1 ; gene_id "ZFP91--XKR4^XKR4^ENSG00000206579.9" ; gene_name XKR4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164288.3" ; havana_transcript "OTTHUMT00000378129.3" ; hgnc_id "HGNC:29394" ; level 2 ; orig_coord_info "chr8,55102489,55103294,+" ; protein_id "ENSP00000328326.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFP91--XKR4^ENST00000327381.7" ; transcript_name "XKR4-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZFP91--XKR4 HAVANA mRNA 16551 39796 . + . FI_gene_label "XKR4^ENSG00000206579.9" ; ID "ZFP91--XKR4^ENST00000327381.7" ; Parent "ZFP91--XKR4^XKR4^ENSG00000206579.9" ; ccdsid "CCDS34893.1" ; exon_id "ENSE00001329870.6" ; exon_number 1 ; gene_id "ZFP91--XKR4^XKR4^ENSG00000206579.9" ; gene_name XKR4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164288.3" ; havana_transcript "OTTHUMT00000378129.3" ; hgnc_id "HGNC:29394" ; level 2 ; orig_coord_info "chr8,55102489,55103294,+" ; protein_id "ENSP00000328326.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFP91--XKR4^ENST00000327381.7" ; transcript_name "XKR4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
CLIP1--AC018653.1 HAVANA gene 46188 49838 . + . FI_gene_label "AC018653.1^ENSG00000255572.1" ; ID "CLIP1--AC018653.1^AC018653.1^ENSG00000255572.1" ; exon_id "ENSE00002216949.1" ; exon_number 1 ; gene_id "CLIP1--AC018653.1^AC018653.1^ENSG00000255572.1" ; gene_name "AC018653.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168174.1" ; havana_transcript "OTTHUMT00000398609.1" ; level 2 ; orig_coord_info "chr12,7188746,7189069,-" ; transcript_id "CLIP1--AC018653.1^ENST00000543061.1" ; transcript_name "AC018653.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
CLIP1--AC018653.1 HAVANA RNA 46188 49838 . + . FI_gene_label "AC018653.1^ENSG00000255572.1" ; ID "CLIP1--AC018653.1^ENST00000543061.1" ; Parent "CLIP1--AC018653.1^AC018653.1^ENSG00000255572.1" ; exon_id "ENSE00002216949.1" ; exon_number 1 ; gene_id "CLIP1--AC018653.1^AC018653.1^ENSG00000255572.1" ; gene_name "AC018653.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168174.1" ; havana_transcript "OTTHUMT00000398609.1" ; level 2 ; orig_coord_info "chr12,7188746,7189069,-" ; transcript_id "CLIP1--AC018653.1^ENST00000543061.1" ; transcript_name "AC018653.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
CPT1A--VN2R9P HAVANA gene 32011 32963 . + . FI_gene_label "VN2R9P^ENSG00000236541.1" ; ID "CPT1A--VN2R9P^VN2R9P^ENSG00000236541.1" ; exon_id "ENSE00001746227.1" ; exon_number 1 ; gene_id "CPT1A--VN2R9P^VN2R9P^ENSG00000236541.1" ; gene_name VN2R9P ; gene_type unitary_pseudogene ; havana_gene "OTTHUMG00000154508.1" ; havana_transcript "OTTHUMT00000335563.1" ; hgnc_id "HGNC:33215" ; level 2 ; ont "PGO:0000006" ; orig_coord_info "chr11,58040708,58041660,-" ; tag basic ; transcript_id "CPT1A--VN2R9P^ENST00000431428.1" ; transcript_name "VN2R9P-201" ; transcript_support_level NA ; transcript_type unitary_pseudogene
CPT1A--VN2R9P HAVANA RNA 32011 32963 . + . FI_gene_label "VN2R9P^ENSG00000236541.1" ; ID "CPT1A--VN2R9P^ENST00000431428.1" ; Parent "CPT1A--VN2R9P^VN2R9P^ENSG00000236541.1" ; exon_id "ENSE00001746227.1" ; exon_number 1 ; gene_id "CPT1A--VN2R9P^VN2R9P^ENSG00000236541.1" ; gene_name VN2R9P ; gene_type unitary_pseudogene ; havana_gene "OTTHUMG00000154508.1" ; havana_transcript "OTTHUMT00000335563.1" ; hgnc_id "HGNC:33215" ; level 2 ; ont "PGO:0000006" ; orig_coord_info "chr11,58040708,58041660,-" ; tag basic ; transcript_id "CPT1A--VN2R9P^ENST00000431428.1" ; transcript_name "VN2R9P-201" ; transcript_support_level NA ; transcript_type unitary_pseudogene
L1 and L2 created:
DDX27--RPSAP1 HAVANA gene 21222 22101 . + . FI_gene_label "RPSAP1^ENSG00000228820.2" ; ID "DDX27--RPSAP1^RPSAP1^ENSG00000228820.2" ; exon_id "ENSE00001776152.1" ; exon_number 1 ; gene_id "DDX27--RPSAP1^RPSAP1^ENSG00000228820.2" ; gene_name RPSAP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000032746.1" ; havana_transcript "OTTHUMT00000079728.1" ; hgnc_id "HGNC:16560" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr20,51130788,51131667,-" ; tag pseudo_consens basic ; transcript_id "DDX27--RPSAP1^ENST00000421328.1" ; transcript_name "RPSAP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DDX27--RPSAP1 HAVANA RNA 21222 22101 . + . FI_gene_label "RPSAP1^ENSG00000228820.2" ; ID "DDX27--RPSAP1^ENST00000421328.1" ; Parent "DDX27--RPSAP1^RPSAP1^ENSG00000228820.2" ; exon_id "ENSE00001776152.1" ; exon_number 1 ; gene_id "DDX27--RPSAP1^RPSAP1^ENSG00000228820.2" ; gene_name RPSAP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000032746.1" ; havana_transcript "OTTHUMT00000079728.1" ; hgnc_id "HGNC:16560" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr20,51130788,51131667,-" ; tag pseudo_consens basic ; transcript_id "DDX27--RPSAP1^ENST00000421328.1" ; transcript_name "RPSAP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
DPM1--RNU4ATAC7P ENSEMBL gene 12173 12297 . + . FI_gene_label "RNU4ATAC7P^ENSG00000252089.1" ; ID "DPM1--RNU4ATAC7P^RNU4ATAC7P^ENSG00000252089.1" ; exon_id "ENSE00002088557.1" ; exon_number 1 ; gene_id "DPM1--RNU4ATAC7P^RNU4ATAC7P^ENSG00000252089.1" ; gene_name RNU4ATAC7P ; gene_type snRNA ; hgnc_id "HGNC:46893" ; level 3 ; orig_coord_info "chr20,54859688,54859812,-" ; tag basic ; transcript_id "DPM1--RNU4ATAC7P^ENST00000516280.1" ; transcript_name "RNU4ATAC7P-201" ; transcript_support_level NA ; transcript_type snRNA
DPM1--RNU4ATAC7P ENSEMBL RNA 12173 12297 . + . FI_gene_label "RNU4ATAC7P^ENSG00000252089.1" ; ID "DPM1--RNU4ATAC7P^ENST00000516280.1" ; Parent "DPM1--RNU4ATAC7P^RNU4ATAC7P^ENSG00000252089.1" ; exon_id "ENSE00002088557.1" ; exon_number 1 ; gene_id "DPM1--RNU4ATAC7P^RNU4ATAC7P^ENSG00000252089.1" ; gene_name RNU4ATAC7P ; gene_type snRNA ; hgnc_id "HGNC:46893" ; level 3 ; orig_coord_info "chr20,54859688,54859812,-" ; tag basic ; transcript_id "DPM1--RNU4ATAC7P^ENST00000516280.1" ; transcript_name "RNU4ATAC7P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
FSIP1--AC013652.1 HAVANA RNA 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^ENST00000558209.1" ; Parent "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
GDPD5--AP002812.2 HAVANA gene 36027 37611 . + . FI_gene_label "AP002812.2^ENSG00000254459.1" ; ID "GDPD5--AP002812.2^AP002812.2^ENSG00000254459.1" ; exon_id "ENSE00002146762.1" ; exon_number 1 ; gene_id "GDPD5--AP002812.2^AP002812.2^ENSG00000254459.1" ; gene_name "AP002812.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166654.1" ; havana_transcript "OTTHUMT00000390987.1" ; level 2 ; orig_coord_info "chr11,77872152,77872262,-" ; tag basic ; transcript_id "GDPD5--AP002812.2^ENST00000525594.1" ; transcript_name "AP002812.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
GDPD5--AP002812.2 HAVANA RNA 36027 37611 . + . FI_gene_label "AP002812.2^ENSG00000254459.1" ; ID "GDPD5--AP002812.2^ENST00000525594.1" ; Parent "GDPD5--AP002812.2^AP002812.2^ENSG00000254459.1" ; exon_id "ENSE00002146762.1" ; exon_number 1 ; gene_id "GDPD5--AP002812.2^AP002812.2^ENSG00000254459.1" ; gene_name "AP002812.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000166654.1" ; havana_transcript "OTTHUMT00000390987.1" ; level 2 ; orig_coord_info "chr11,77872152,77872262,-" ; tag basic ; transcript_id "GDPD5--AP002812.2^ENST00000525594.1" ; transcript_name "AP002812.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
IGHMBP2--AL445433.2 HAVANA gene 27119 32793 . + . FI_gene_label "AL445433.2^ENSG00000232825.3" ; ID "IGHMBP2--AL445433.2^AL445433.2^ENSG00000232825.3" ; exon_id "ENSE00001769969.1" ; exon_number 1 ; gene_id "IGHMBP2--AL445433.2^AL445433.2^ENSG00000232825.3" ; gene_name "AL445433.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010766.4" ; havana_transcript "OTTHUMT00000029675.2" ; level 2 ; orig_coord_info "chr1,99004276,99004645,+" ; tag basic ; transcript_id "IGHMBP2--AL445433.2^ENST00000425113.1" ; transcript_name "AL445433.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
IGHMBP2--AL445433.2 HAVANA RNA 27119 32793 . + . FI_gene_label "AL445433.2^ENSG00000232825.3" ; ID "IGHMBP2--AL445433.2^ENST00000425113.1" ; Parent "IGHMBP2--AL445433.2^AL445433.2^ENSG00000232825.3" ; exon_id "ENSE00001769969.1" ; exon_number 1 ; gene_id "IGHMBP2--AL445433.2^AL445433.2^ENSG00000232825.3" ; gene_name "AL445433.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010766.4" ; havana_transcript "OTTHUMT00000029675.2" ; level 2 ; orig_coord_info "chr1,99004276,99004645,+" ; tag basic ; transcript_id "IGHMBP2--AL445433.2^ENST00000425113.1" ; transcript_name "AL445433.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
KDM2A--AP001372.2 HAVANA gene 35177 38669 . + . FI_gene_label "AP001372.2^ENSG00000254837.2" ; ID "KDM2A--AP001372.2^AP001372.2^ENSG00000254837.2" ; exon_id "ENSE00002196665.1" ; exon_number 1 ; gene_id "KDM2A--AP001372.2^AP001372.2^ENSG00000254837.2" ; gene_name "AP001372.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000150368.2" ; havana_transcript "OTTHUMT00000317865.2" ; level 2 ; orig_coord_info "chr11,74493366,74493973,+" ; tag basic ; transcript_id "KDM2A--AP001372.2^ENST00000526036.1" ; transcript_name "AP001372.2-201" ; transcript_support_level 1 ; transcript_type lncRNA
KDM2A--AP001372.2 HAVANA RNA 35177 38669 . + . FI_gene_label "AP001372.2^ENSG00000254837.2" ; ID "KDM2A--AP001372.2^ENST00000526036.1" ; Parent "KDM2A--AP001372.2^AP001372.2^ENSG00000254837.2" ; exon_id "ENSE00002196665.1" ; exon_number 1 ; gene_id "KDM2A--AP001372.2^AP001372.2^ENSG00000254837.2" ; gene_name "AP001372.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000150368.2" ; havana_transcript "OTTHUMT00000317865.2" ; level 2 ; orig_coord_info "chr11,74493366,74493973,+" ; tag basic ; transcript_id "KDM2A--AP001372.2^ENST00000526036.1" ; transcript_name "AP001372.2-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
NTN4--RPL30P11 HAVANA gene 20826 21478 . + . FI_gene_label "RPL30P11^ENSG00000244573.3" ; ID "NTN4--RPL30P11^RPL30P11^ENSG00000244573.3" ; exon_id "ENSE00002244913.2" ; exon_number 1 ; gene_id "NTN4--RPL30P11^RPL30P11^ENSG00000244573.3" ; gene_name RPL30P11 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000157491.5" ; havana_transcript "OTTHUMT00000348961.3" ; hgnc_id "HGNC:36260" ; level 1 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr12,14357449,14357517,-" ; tag pseudo_consens basic ; transcript_id "NTN4--RPL30P11^ENST00000495304.3" ; transcript_name "RPL30P11-201" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
NTN4--RPL30P11 HAVANA RNA 20826 21478 . + . FI_gene_label "RPL30P11^ENSG00000244573.3" ; ID "NTN4--RPL30P11^ENST00000495304.3" ; Parent "NTN4--RPL30P11^RPL30P11^ENSG00000244573.3" ; exon_id "ENSE00002244913.2" ; exon_number 1 ; gene_id "NTN4--RPL30P11^RPL30P11^ENSG00000244573.3" ; gene_name RPL30P11 ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000157491.5" ; havana_transcript "OTTHUMT00000348961.3" ; hgnc_id "HGNC:36260" ; level 1 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr12,14357449,14357517,-" ; tag pseudo_consens basic ; transcript_id "NTN4--RPL30P11^ENST00000495304.3" ; transcript_name "RPL30P11-201" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
L1 and L2 created:
PREX1--AL122058.1 HAVANA gene 45191 49483 . + . FI_gene_label "AL122058.1^ENSG00000226308.1" ; ID "PREX1--AL122058.1^AL122058.1^ENSG00000226308.1" ; exon_id "ENSE00001736744.1" ; exon_number 1 ; gene_id "PREX1--AL122058.1^AL122058.1^ENSG00000226308.1" ; gene_name "AL122058.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000032811.2" ; havana_transcript "OTTHUMT00000079829.2" ; level 2 ; orig_coord_info "chr20,57266797,57267206,+" ; tag basic ; transcript_id "PREX1--AL122058.1^ENST00000412321.1" ; transcript_name "AL122058.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
PREX1--AL122058.1 HAVANA RNA 45191 49483 . + . FI_gene_label "AL122058.1^ENSG00000226308.1" ; ID "PREX1--AL122058.1^ENST00000412321.1" ; Parent "PREX1--AL122058.1^AL122058.1^ENSG00000226308.1" ; exon_id "ENSE00001736744.1" ; exon_number 1 ; gene_id "PREX1--AL122058.1^AL122058.1^ENSG00000226308.1" ; gene_name "AL122058.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000032811.2" ; havana_transcript "OTTHUMT00000079829.2" ; level 2 ; orig_coord_info "chr20,57266797,57267206,+" ; tag basic ; transcript_id "PREX1--AL122058.1^ENST00000412321.1" ; transcript_name "AL122058.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
SARNP--RNU6-318P ENSEMBL gene 17009 17111 . + . FI_gene_label "RNU6-318P^ENSG00000207010.1" ; ID "SARNP--RNU6-318P^RNU6-318P^ENSG00000207010.1" ; exon_id "ENSE00001807719.1" ; exon_number 1 ; gene_id "SARNP--RNU6-318P^RNU6-318P^ENSG00000207010.1" ; gene_name "RNU6-318P" ; gene_type snRNA ; hgnc_id "HGNC:47281" ; level 3 ; orig_coord_info "chr12,12289227,12289329,-" ; tag basic ; transcript_id "SARNP--RNU6-318P^ENST00000384283.1" ; transcript_name "RNU6-318P-201" ; transcript_support_level NA ; transcript_type snRNA
SARNP--RNU6-318P ENSEMBL RNA 17009 17111 . + . FI_gene_label "RNU6-318P^ENSG00000207010.1" ; ID "SARNP--RNU6-318P^ENST00000384283.1" ; Parent "SARNP--RNU6-318P^RNU6-318P^ENSG00000207010.1" ; exon_id "ENSE00001807719.1" ; exon_number 1 ; gene_id "SARNP--RNU6-318P^RNU6-318P^ENSG00000207010.1" ; gene_name "RNU6-318P" ; gene_type snRNA ; hgnc_id "HGNC:47281" ; level 3 ; orig_coord_info "chr12,12289227,12289329,-" ; tag basic ; transcript_id "SARNP--RNU6-318P^ENST00000384283.1" ; transcript_name "RNU6-318P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
SH2B3--ENPP7P5 HAVANA gene 14262 17292 . + . FI_gene_label "ENPP7P5^ENSG00000256589.2" ; ID "SH2B3--ENPP7P5^ENPP7P5^ENSG00000256589.2" ; exon_id "ENSE00002246045.2" ; exon_number 1 ; gene_id "SH2B3--ENPP7P5^ENPP7P5^ENSG00000256589.2" ; gene_name ENPP7P5 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000168662.3" ; havana_transcript "OTTHUMT00000400510.2" ; hgnc_id "HGNC:48688" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr12,8308598,8308855,-" ; tag basic ; transcript_id "SH2B3--ENPP7P5^ENST00000541031.2" ; transcript_name "ENPP7P5-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
SH2B3--ENPP7P5 HAVANA RNA 14262 17292 . + . FI_gene_label "ENPP7P5^ENSG00000256589.2" ; ID "SH2B3--ENPP7P5^ENST00000541031.2" ; Parent "SH2B3--ENPP7P5^ENPP7P5^ENSG00000256589.2" ; exon_id "ENSE00002246045.2" ; exon_number 1 ; gene_id "SH2B3--ENPP7P5^ENPP7P5^ENSG00000256589.2" ; gene_name ENPP7P5 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000168662.3" ; havana_transcript "OTTHUMT00000400510.2" ; hgnc_id "HGNC:48688" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr12,8308598,8308855,-" ; tag basic ; transcript_id "SH2B3--ENPP7P5^ENST00000541031.2" ; transcript_name "ENPP7P5-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
UHRF1BP1L--HNRNPA1P50 HAVANA gene 32167 33094 . + . FI_gene_label "HNRNPA1P50^ENSG00000257195.1" ; ID "UHRF1BP1L--HNRNPA1P50^HNRNPA1P50^ENSG00000257195.1" ; exon_id "ENSE00002358199.1" ; exon_number 1 ; gene_id "UHRF1BP1L--HNRNPA1P50^HNRNPA1P50^ENSG00000257195.1" ; gene_name HNRNPA1P50 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000170108.1" ; havana_transcript "OTTHUMT00000407290.1" ; hgnc_id "HGNC:48780" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,92883773,92884700,+" ; tag pseudo_consens basic ; transcript_id "UHRF1BP1L--HNRNPA1P50^ENST00000546565.1" ; transcript_name "HNRNPA1P50-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
UHRF1BP1L--HNRNPA1P50 HAVANA RNA 32167 33094 . + . FI_gene_label "HNRNPA1P50^ENSG00000257195.1" ; ID "UHRF1BP1L--HNRNPA1P50^ENST00000546565.1" ; Parent "UHRF1BP1L--HNRNPA1P50^HNRNPA1P50^ENSG00000257195.1" ; exon_id "ENSE00002358199.1" ; exon_number 1 ; gene_id "UHRF1BP1L--HNRNPA1P50^HNRNPA1P50^ENSG00000257195.1" ; gene_name HNRNPA1P50 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000170108.1" ; havana_transcript "OTTHUMT00000407290.1" ; hgnc_id "HGNC:48780" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,92883773,92884700,+" ; tag pseudo_consens basic ; transcript_id "UHRF1BP1L--HNRNPA1P50^ENST00000546565.1" ; transcript_name "HNRNPA1P50-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
810 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
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----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1505 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 57 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed