#!/bin/bash
### ---
### name: 'NFCORE_RNAFUSION:RNAFUSION:MULTIQC'
### container: '292967571998.dkr.ecr.us-west-2.amazonaws.com/biocontainers/multiqc:1.21--pyhdfd78af_0'
### outputs:
### - '*multiqc_report.html'
### - '*_data'
### - '*_plots'
### - 'versions.yml'
### ...
set -e
set -u
NXF_DEBUG=${NXF_DEBUG:=0}; [[ $NXF_DEBUG > 1 ]] && set -x
NXF_ENTRY=${1:-nxf_main}
nxf_tree() {
local pid=$1
declare -a ALL_CHILDREN
while read P PP;do
ALL_CHILDREN[$PP]+=" $P"
done < <(ps -e -o pid= -o ppid=)
pstat() {
local x_pid=$1
local STATUS=$(2> /dev/null < /proc/$1/status grep -E 'Vm|ctxt')
if [ $? = 0 ]; then
local x_vsz=$(echo "$STATUS" | grep VmSize | awk '{print $2}' || echo -n '0')
local x_rss=$(echo "$STATUS" | grep VmRSS | awk '{print $2}' || echo -n '0')
local x_peak=$(echo "$STATUS" | grep -E 'VmPeak|VmHWM' | sed 's/^.*:\s*//' | sed 's/[\sa-zA-Z]*$//' | tr '\n' ' ' || echo -n '0 0')
local x_pmem=$(awk -v rss=$x_rss -v mem_tot=$mem_tot 'BEGIN {printf "%.0f", rss/mem_tot*100*10}' || echo -n '0')
local vol_ctxt=$(echo "$STATUS" | grep '\bvoluntary_ctxt_switches' | awk '{print $2}' || echo -n '0')
local inv_ctxt=$(echo "$STATUS" | grep '\bnonvoluntary_ctxt_switches' | awk '{print $2}' || echo -n '0')
cpu_stat[x_pid]="$x_pid $x_pmem $x_vsz $x_rss $x_peak $vol_ctxt $inv_ctxt"
fi
}
pwalk() {
pstat $1
for i in ${ALL_CHILDREN[$1]:=}; do pwalk $i; done
}
pwalk $1
}
nxf_stat() {
cpu_stat=()
nxf_tree $1
declare -a sum=(0 0 0 0 0 0 0 0)
local pid
local i
for pid in "${!cpu_stat[@]}"; do
local row=(${cpu_stat[pid]})
[ $NXF_DEBUG = 1 ] && echo "++ stat mem=${row[*]}"
for i in "${!row[@]}"; do
if [ $i != 0 ]; then
sum[i]=$((sum[i]+row[i]))
fi
done
done
[ $NXF_DEBUG = 1 ] && echo -e "++ stat SUM=${sum[*]}"
for i in {1..7}; do
if [ ${sum[i]} -lt ${cpu_peak[i]} ]; then
sum[i]=${cpu_peak[i]}
else
cpu_peak[i]=${sum[i]}
fi
done
[ $NXF_DEBUG = 1 ] && echo -e "++ stat PEAK=${sum[*]}\n"
nxf_stat_ret=(${sum[*]})
}
nxf_mem_watch() {
set -o pipefail
local pid=$1
local trace_file=.command.trace
local count=0;
declare -a cpu_stat=(0 0 0 0 0 0 0 0)
declare -a cpu_peak=(0 0 0 0 0 0 0 0)
local mem_tot=$(< /proc/meminfo grep MemTotal | awk '{print $2}')
local timeout
local DONE
local STOP=''
[ $NXF_DEBUG = 1 ] && nxf_sleep 0.2 && ps fx
while true; do
nxf_stat $pid
if [ $count -lt 10 ]; then timeout=1;
elif [ $count -lt 120 ]; then timeout=5;
else timeout=30;
fi
read -t $timeout -r DONE || true
[[ $DONE ]] && break
if [ ! -e /proc/$pid ]; then
[ ! $STOP ] && STOP=$(nxf_date)
[ $(($(nxf_date)-STOP)) -gt 10000 ] && break
fi
count=$((count+1))
done
printf "%s\n" \
"%mem=${nxf_stat_ret[1]}" \
"vmem=${nxf_stat_ret[2]}" \
"rss=${nxf_stat_ret[3]}" \
"peak_vmem=${nxf_stat_ret[4]}" \
"peak_rss=${nxf_stat_ret[5]}" \
"vol_ctxt=${nxf_stat_ret[6]}" \
"inv_ctxt=${nxf_stat_ret[7]}" >> "$trace_file" || >&2 echo "Error: Failed to append to file: $trace_file"
}
nxf_write_trace() {
printf "%s\n" \
"nextflow.trace/v2" \
"realtime=$wall_time" \
"%cpu=$ucpu" \
"cpu_model=$cpu_model" \
"rchar=${io_stat1[0]}" \
"wchar=${io_stat1[1]}" \
"syscr=${io_stat1[2]}" \
"syscw=${io_stat1[3]}" \
"read_bytes=${io_stat1[4]}" \
"write_bytes=${io_stat1[5]}" >| "$trace_file" || >&2 echo "Error: Failed to write to file: $trace_file"
}
nxf_trace_mac() {
local start_millis=$(nxf_date)
/bin/bash -euo pipefail .command.sh
local end_millis=$(nxf_date)
local wall_time=$((end_millis-start_millis))
local ucpu=''
local cpu_model=''
local io_stat1=('' '' '' '' '' '')
nxf_write_trace
}
nxf_fd() {
local FD=11
while [ -e /proc/$$/fd/$FD ]; do FD=$((FD+1)); done
echo $FD
}
nxf_trace_linux() {
local pid=$$
command -v ps &>/dev/null || { >&2 echo "Command 'ps' required by nextflow to collect task metrics cannot be found"; exit 1; }
local num_cpus=$(< /proc/cpuinfo grep '^processor' -c)
local cpu_model=$(< /proc/cpuinfo grep '^model name' | head -n 1 | awk 'BEGIN{FS="\t: "} { print $2 }')
local tot_time0=$(grep '^cpu ' /proc/stat | awk '{sum=$2+$3+$4+$5+$6+$7+$8+$9; printf "%.0f",sum}')
local cpu_time0=$(2> /dev/null < /proc/$pid/stat awk '{printf "%.0f", ($16+$17)*10 }' || echo -n 'X')
local io_stat0=($(2> /dev/null < /proc/$pid/io sed 's/^.*:\s*//' | head -n 6 | tr '\n' ' ' || echo -n '0 0 0 0 0 0'))
local start_millis=$(nxf_date)
trap 'kill $mem_proc' ERR
/bin/bash -euo pipefail .command.sh &
local task=$!
mem_fd=$(nxf_fd)
eval "exec $mem_fd> >(nxf_mem_watch $task)"
local mem_proc=$!
wait $task
local end_millis=$(nxf_date)
local tot_time1=$(grep '^cpu ' /proc/stat | awk '{sum=$2+$3+$4+$5+$6+$7+$8+$9; printf "%.0f",sum}')
local cpu_time1=$(2> /dev/null < /proc/$pid/stat awk '{printf "%.0f", ($16+$17)*10 }' || echo -n 'X')
local ucpu=$(awk -v p1=$cpu_time1 -v p0=$cpu_time0 -v t1=$tot_time1 -v t0=$tot_time0 -v n=$num_cpus 'BEGIN { pct=(p1-p0)/(t1-t0)*100*n; printf("%.0f", pct>0 ? pct : 0) }' )
local io_stat1=($(2> /dev/null < /proc/$pid/io sed 's/^.*:\s*//' | head -n 6 | tr '\n' ' ' || echo -n '0 0 0 0 0 0'))
local i
for i in {0..5}; do
io_stat1[i]=$((io_stat1[i]-io_stat0[i]))
done
local wall_time=$((end_millis-start_millis))
[ $NXF_DEBUG = 1 ] && echo "+++ STATS %CPU=$ucpu TIME=$wall_time I/O=${io_stat1[*]}"
printf "%s\n" \
"nextflow.trace/v2" \
"realtime=$wall_time" \
"%cpu=$ucpu" \
"cpu_model=$cpu_model" \
"rchar=${io_stat1[0]}" \
"wchar=${io_stat1[1]}" \
"syscr=${io_stat1[2]}" \
"syscw=${io_stat1[3]}" \
"read_bytes=${io_stat1[4]}" \
"write_bytes=${io_stat1[5]}" >| "$trace_file" || >&2 echo "Error: Failed to write to file: $trace_file"
[ -e /proc/$mem_proc ] && eval "echo 'DONE' >&$mem_fd" || true
wait $mem_proc 2>/dev/null || true
while [ -e /proc/$mem_proc ]; do nxf_sleep 0.1; done
}
nxf_trace() {
local trace_file=.command.trace
touch $trace_file
if [[ $(uname) = Darwin ]]; then
nxf_trace_mac
else
nxf_trace_linux
fi
}
# bash helper functions
nxf_cp_retry() {
local max_attempts=1
local timeout=10
local attempt=0
local exitCode=0
while (( $attempt < $max_attempts ))
do
if "$@"
then
return 0
else
exitCode=$?
fi
if [[ $exitCode == 0 ]]
then
break
fi
nxf_sleep $timeout
attempt=$(( attempt + 1 ))
timeout=$(( timeout * 2 ))
done
}
nxf_parallel() {
IFS=$'\n'
local cmd=("$@")
local cpus=$(nproc 2>/dev/null || < /proc/cpuinfo grep '^process' -c)
local max=$(if (( cpus>4 )); then echo 4; else echo $cpus; fi)
local i=0
local pid=()
(
set +u
while ((i<${#cmd[@]})); do
local copy=()
for x in "${pid[@]}"; do
# if the process exist, keep in the 'copy' array, otherwise wait on it to capture the exit code
# see https://github.com/nextflow-io/nextflow/pull/4050
[[ -e /proc/$x ]] && copy+=($x) || wait $x
done
pid=("${copy[@]}")
if ((${#pid[@]}>=$max)); then
nxf_sleep 0.2
else
eval "${cmd[$i]}" &
pid+=($!)
((i+=1))
fi
done
for p in "${pid[@]}"; do
wait $p
done
)
unset IFS
}
# aws helper for s5cmd
nxf_s3_upload() {
local name=$1
local s3path=$2
if [[ "$name" == - ]]; then
local tmp=$(nxf_mktemp)
cp /dev/stdin $tmp/$name
/opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD $tmp/$name "$s3path"
elif [[ -d "$name" ]]; then
/opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD "$name/" "$s3path/$name/"
else
/opt/s5cmd/bin/s5cmd --log error cp --storage-class STANDARD "$name" "$s3path/$name"
fi
}
nxf_s3_download() {
local source=$1
local target=$2
echo " Downloading: $source"
local file_name=$(basename $1)
local is_dir=$(/opt/s5cmd/bin/s5cmd ls $source | grep -F "DIR ${file_name}/" -c)
if [[ $is_dir == 1 ]]; then
/opt/s5cmd/bin/s5cmd --log error cp "$source/*" "$target"
else
/opt/s5cmd/bin/s5cmd --log error cp "$source" "$target"
fi
}
nxf_sleep() {
sleep $1 2>/dev/null || sleep 1;
}
nxf_date() {
local ts=$(date +%s%3N);
if [[ ${#ts} == 10 ]]; then echo ${ts}000
elif [[ $ts == *%3N ]]; then echo ${ts/\%3N/000}
elif [[ $ts == *3N ]]; then echo ${ts/3N/000}
elif [[ ${#ts} == 13 ]]; then echo $ts
else echo "Unexpected timestamp value: $ts"; exit 1
fi
}
nxf_env() {
echo '============= task environment ============='
env | sort | sed "s/\(.*\)AWS\(.*\)=\(.\{6\}\).*/\1AWS\2=\3xxxxxxxxxxxxx/"
echo '============= task output =================='
}
nxf_kill() {
declare -a children
while read P PP;do
children[$PP]+=" $P"
done < <(ps -e -o pid= -o ppid=)
kill_all() {
[[ $1 != $$ ]] && kill $1 2>/dev/null || true
for i in ${children[$1]:=}; do kill_all $i; done
}
kill_all $1
}
nxf_mktemp() {
local base=${1:-/tmp}
mkdir -p "$base"
if [[ $(uname) = Darwin ]]; then mktemp -d $base/nxf.XXXXXXXXXX
else TMPDIR="$base" mktemp -d -t nxf.XXXXXXXXXX
fi
}
nxf_fs_copy() {
local source=$1
local target=$2
local basedir=$(dirname $1)
mkdir -p $target/$basedir
cp -fRL $source $target/$basedir
}
nxf_fs_move() {
local source=$1
local target=$2
local basedir=$(dirname $1)
mkdir -p $target/$basedir
mv -f $source $target/$basedir
}
nxf_fs_rsync() {
rsync -rRl $1 $2
}
nxf_fs_rclone() {
rclone copyto $1 $2/$1
}
nxf_fs_fcp() {
fcp $1 $2/$1
}
on_exit() {
local last_err=$?
local exit_status=${nxf_main_ret:=0}
[[ ${exit_status} -eq 0 && ${nxf_unstage_ret:=0} -ne 0 ]] && exit_status=${nxf_unstage_ret:=0}
[[ ${exit_status} -eq 0 && ${last_err} -ne 0 ]] && exit_status=${last_err}
printf -- $exit_status | nxf_s3_upload - s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/76b483d31270bc6f8b5d15e1846f31/.exitcode || true
set +u
rm -rf $NXF_SCRATCH || true
exit $exit_status
}
on_term() {
set +e
[[ "$pid" ]] && nxf_kill $pid
}
nxf_launch() {
/bin/bash -euo pipefail .command.run nxf_trace
}
nxf_stage() {
true
# stage input files
downloads=(true)
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/2e31f187778a3010fdeabc8c44bdbd/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_1_fastqc.zip 695/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/0dc6d9b067691a0f58194c28c09515/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_preseq_mqc.tsv 2274/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/6685162ec25e285b8ed123cbc353a9/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.bam_stat.txt 1527/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/484c8fcbd28bbd769d4661f0269681/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_1_fastqc.zip 755/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/59ea08472885eb2e40282553c21ff4/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.attempt2.command.log 2028/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/b2dbfef2fc8bb2751b309f7c05e243/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.attempt1.command.log 2047/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/6512832672786a92922f817c4b6965/aih-tih-sc-835699-R1_A23WJ53LT4_1.lc_extrap.txt 2201/aih-tih-sc-835699-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/a5d766ffdf44586796da3b51796173/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.fastp.json 44/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/2dbfa37e35f3f6f84fe14b3b83d7fe/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 463/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/ebdb7028a5acaa6b37ccc5e01c4b4f/aih-tih-sc-331e97-R1_A23WJ53LT4_1.infer_experiment.txt 964/aih-tih-sc-331e97-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/f2836105fb2e6856003824ee09a38e/aih-tih-sc-55b175-R1_A23WJ53LT4_1.inner_distance_freq.txt 1154/aih-tih-sc-55b175-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/ef8ad89b69bf90569318158e992c0b/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.fastp.html 120/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/c11d064ba9a2fe4123e62288ee0e58/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1390/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/311a3e1ef5f0513ab89a5560346ddf/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1600/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/3edf2dc3d2e904a06707c1cc6db47f/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1975/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/e6c23a0a28d75d6dd3fa86555ec14e/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_1_fastqc.zip 597/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/8fe77cc4cfc54f1e576f9b31e19914/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.junction_annotation.log 1197/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/fd39b3357bfd2865a5c01fb6a98e32/aih-tih-sc-284856-R1_A23WJ53LT4_1.infer_experiment.txt 967/aih-tih-sc-284856-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/94683d11ead20921b36fe784a2dee8/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 520/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/f37e438d4cdeb905a60c1fa5bbb433/aih-tih-sc-ced210-R1_A23WJ53LT4_1.fastp.json 94/aih-tih-sc-ced210-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/f5fd8ff3399b9cccbc46baca16c0ec/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.junction_annotation.log 1224/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/3a2f446934e3aef63f5f11fa72aab0/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.infer_experiment.txt 1045/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/751d0544bb90ad793bbf4dc7197676/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.junction_annotation.log 1231/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/44aeb9a87c66d8cce6841e0188c24d/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2375/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/e05924cb958502fb238abf371ba7df/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_kallisto_mqc.tsv 309/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/050bc7e1c7c98fce576a271532ef8c/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 393/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/169b7dfcd04e424fabe4b83403a7c2/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_2_fastqc.zip 600/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/6275ac87e2150d0873cec3912014dc/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.pos.DupRate.xls 1657/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/f608c60daa873a09c5b11199d48d78/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.fastp.html 123/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/cda03216b0c1f7a879f40d9356d582/aih-tih-sc-560d56-R1_A23WJ53LT4_1.read_distribution.txt 1262/aih-tih-sc-560d56-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/f07e5c8360c733f924cc18545388f2/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.attempt2.command.log 2102/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/4e3387652e5ad6250e89b8cd95eb1e/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.fastp.json 57/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/e03d778989310adaea80d7dc46c6ab/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 877/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/f935a41d0bef9343bb35b7b6c3f46d/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_preseq_mqc.tsv 2290/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/bcf528504f1f46ec26badfd64d5f7c/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.bam_stat.txt 1526/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/9434d92f3bac593064c991e4be6cd6/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.Log.final.out 826/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/ee90272e9cbb3c0706cc20554d36c9/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 958/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/f9ef9c515aa63d32e8d59b482f33c9/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_contamination_mqc.tsv 1771/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/b266762180f55fa21cfd6d10c97852/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.Log.final.out 777/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/414d781812c15a8d1e5e8f7566a121/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 881/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/a7426440f6a341110f626ea5e0748f/aih-tih-sc-fee548-R1_A23WJ53LT4_1_preseq_mqc.tsv 2260/aih-tih-sc-fee548-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/31b0eebfcbe1916d68835b0360df16/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 941/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/ce7ee0e6982d9a38320cc101aee60f/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1356/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/e1a5abd42a6d2e608185c37996a3b3/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_2_fastqc.zip 676/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/2c494dbde5ab7421c2ae2300cf3899/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 546/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/76f6e626b146e72a8a78542ecffb31/aih-tih-sc-64cace-R1_A23WJ53LT4_1.log 200/aih-tih-sc-64cace-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/195b03e640f9a7c6d5bbfda432f95a/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 494/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/37d3daaaf509ef90099906c1e793fd/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1570/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/70aa610e7ffaad747f66ae34bea3b2/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.read_distribution.txt 1286/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/49d6b84ccc4969ff8658a5af354461/aih-tih-sc-965752-R1_A23WJ53LT4_1.pos.DupRate.xls 1687/aih-tih-sc-965752-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/f0dc7f32302996398fe0c594a38629/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_preseq_mqc.tsv 2298/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/4588501ff739ea562b4b876258dacc/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 453/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/dc801219c6eef0b1d95276fcb961d4/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.read_distribution.txt 1311/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/d85330126730709a997c2e090b43b7/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_contamination_mqc.tsv 1738/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/94ccb80f0697cbc9630370e6636e13/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_kallisto_mqc.tsv 302/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/612a164805e29c3719bcd790728334/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.infer_experiment.txt 1002/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/e9394746a938f307c9fc81ced73b9c/aih-tih-sc-669302-R1_A23WJ53LT4_1.attempt1.command.log 2101/aih-tih-sc-669302-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/464302599703efea9a94294b404ec6/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_preseq_mqc.tsv 2292/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/94234f3360f0388f8b5a9d0547617d/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 929/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/34ad38f126bff1c488107fd46bc1b6/aih-tih-sc-835699-R1_A23WJ53LT4_1.Log.final.out 854/aih-tih-sc-835699-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/40730b03a872251af85b193c4c0674/aih-tih-sc-da460d-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1619/aih-tih-sc-da460d-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/8c7b77848ce3b4389be70afe4c661d/aih-tih-sc-804b22-R1_A23WJ53LT4_1.junction_annotation.log 1222/aih-tih-sc-804b22-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/30a0c64f3819ed69c102a5d5abc563/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2396/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/a9b77c2df81bd4d81ce773031ed290/aih-tih-sc-488877-R1_A23WJ53LT4_1.Log.final.out 815/aih-tih-sc-488877-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/5a4ee4e61f47865fd898c8cba748fb/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.inner_distance_freq.txt 1081/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/54a5276962b1029329082526657258/aih-tih-sc-387c73-R1_A23WJ53LT4_1.junction_annotation.log 1243/aih-tih-sc-387c73-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/50747617faa71d84e67f30f34cf294/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1389/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/112f2f3ca38296d0900dce8a42c0cb/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2330/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/45326ec740152d0c8456b4dd233c55/aih-tih-sc-64cace-R1_A23WJ53LT4_1_contamination_mqc.tsv 1736/aih-tih-sc-64cace-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/6bbea28a33673930c4f8473224d974/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1369/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/7aca6c30b7546705f4e3b92d234d49/aih-tih-sc-fee548-R1_A23WJ53LT4_1.junction_annotation.log 1200/aih-tih-sc-fee548-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e16d7e75af5cdf7e6cbb1265babce2/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_2_fastqc.zip 672/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/3452116e2888a5af9ed4e98c948faf/aih-tih-sc-55b175-R1_A23WJ53LT4_1.lc_extrap.txt 2209/aih-tih-sc-55b175-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/f41766b22a165d87b0e1e85409f727/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.attempt1.command.log 2032/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/634aa0aa65969ef8a9c83fd62d68dd/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.bam_stat.txt 1535/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/87c33cf4c122a3e09af32c3a09e7d9/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2342/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/a36a41b26f774a0e0d5437c0b57132/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1387/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/fd1928b349e8dd9366eec2ef45046d/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1412/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/b7939234e86da97c1a94a3ba37688a/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_contamination_mqc.tsv 1770/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/7951251d477c72c7b74b5c30ad7427/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2016/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/409ac636780cbf81ee871d74f99531/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.inner_distance_freq.txt 1134/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/c67275265cc6b90b1aeea700521fdd/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_preseq_mqc.tsv 2302/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/5e9a501cecb960ba346015cf5c78d5/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.fastp.html 192/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/96b2f7d42b0a412d4b6ba5b2ca7e70/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.Log.final.out 809/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/322f36e3b1b459af032cab5d5ddf76/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 488/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/9c53ec77fece68f836f0dda3103cb4/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.fastp.html 133/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/2b212e19368d6a1fb90db5e23e1a49/aih-tih-sc-951f98-R1_A23WJ53LT4_1.md.bam.metrics 1910/aih-tih-sc-951f98-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/3b609078848aec4a487f13b55ed603/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_2_fastqc.zip 750/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/cc9148c667a436654f9818caa8f490/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.inner_distance_freq.txt 1091/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/0ed00884f9d21dafed375cb3094b30/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_kallisto_mqc.tsv 375/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/36d05b1a6f09f6edaf8792e37dafb6/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1416/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/00c0cc37a8fed37ff973451a4091f7/aih-tih-sc-7de750-R1_A23WJ53LT4_1_2_fastqc.zip 664/aih-tih-sc-7de750-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/28c1293b5a379f5d80b57bf385326b/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.read_distribution.txt 1303/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/f8bca0e16dfaea21ac260771f29ecd/aih-tih-sc-331e97-R1_A23WJ53LT4_1.pos.DupRate.xls 1636/aih-tih-sc-331e97-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/9e08dd92f59055db05f7efcf50ac88/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1552/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/95123a4aa7c8e4c62109d26feaaa7a/aih-tih-sc-835699-R1_A23WJ53LT4_1_preseq_mqc.tsv 2297/aih-tih-sc-835699-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/bc0d457ff8427b1b38473e43213a48/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1993/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/e88594f32350066b61af12b2ff273c/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.lc_extrap.txt 2153/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/2b92aa113dd85c7e7bdf2a7d57bb9b/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_contamination_mqc.tsv 1739/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/9a38257650726e881f0ec9a9296bd5/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 957/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/215f5b679a014f13a9ab179f6556cf/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.lc_extrap.txt 2177/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/7e53e54f0fabedfffaf331b95fd38a/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_1_fastqc.zip 727/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/cf21c6816e29c7c903cfd771025fc1/aih-tih-sc-331e97-R1_A23WJ53LT4_1_2_fastqc.zip 582/aih-tih-sc-331e97-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/07d13f79b03bd957b435d44fa44e7e/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.md.bam.metrics 1911/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/03753edd1b7b9f177a873cba8990ee/aih-tih-sc-bec563-R1_A23WJ53LT4_1.log 279/aih-tih-sc-bec563-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/f33936f1bcca77b1ee3bcaa6450c45/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_1_fastqc.zip 661/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/a9133b959d783f6053e4ca9ca30fd2/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_1_fastqc.zip 757/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/050bc7e1c7c98fce576a271532ef8c/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 394/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/f73b4e4d1391047e7dc3b7f505b185/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1962/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/15e44d2074f95bfa0a7c72b3bd8958/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_1_fastqc.zip 601/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/ca356f66e76627923996e6062e1213/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.infer_experiment.txt 1040/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/eafba15b3edc09fdfd84067f8c4c48/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_preseq_mqc.tsv 2239/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/d39c5c0518e30fa5f48f3f05d6e015/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_2_fastqc.zip 650/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/a2aa9ba052c82c620539099e692809/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1578/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/e88594f32350066b61af12b2ff273c/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.attempt1.command.log 2057/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/35fc32c4c79c9a843b28b6ac6bb135/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.read_distribution.txt 1312/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/d8dc1cfa850b6eb8ed7752ae3326f5/aih-tih-sc-550807-R1_A23WJ53LT4_1_1_fastqc.zip 613/aih-tih-sc-550807-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/9b5861df2ca9f0fc75c17e2210680a/aih-tih-sc-da460d-R1_A23WJ53LT4_1.junction_annotation.log 1217/aih-tih-sc-da460d-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/e031d1c5e52524ae8f7658cbcdaeea/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.lc_extrap.txt 2186/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/95cf49e5824eff1c58e26a034f08b7/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_contamination_mqc.tsv 1772/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/3452116e2888a5af9ed4e98c948faf/aih-tih-sc-55b175-R1_A23WJ53LT4_1.attempt1.command.log 2113/aih-tih-sc-55b175-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/b7437e46f10a16e882d7a060da461b/aih-tih-sc-da460d-R1_A23WJ53LT4_1_1_fastqc.zip 711/aih-tih-sc-da460d-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/9302a5c09d19df280e3985dc9e0c65/aih-tih-sc-674b78-R1_A23WJ53LT4_1.md.bam.metrics 1897/aih-tih-sc-674b78-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/116ad5a24269becee9ce48c920ac56/aih-tih-sc-284856-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 396/aih-tih-sc-284856-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/41bcf733d4e124be79d30693a86b4a/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.inner_distance_freq.txt 1093/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/92b5e988d1b11a74add345f680f6d1/NTC_0001_0001_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1539/NTC_0001_0001_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/cf8aac414c49e4f57aec91a856ffd8/aih-tih-sc-7de750-R1_A23WJ53LT4_1.attempt1.command.log 2064/aih-tih-sc-7de750-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/9031ddcd3ef3a9cd3b9e4402e5c2bf/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_preseq_mqc.tsv 2249/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/7098614b85b07ab8ca3a2d67c539c6/aih-tih-sc-55b175-R1_A23WJ53LT4_1_kallisto_mqc.tsv 359/aih-tih-sc-55b175-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/826dc6f0736544e4c0954e29651362/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2343/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/3074a9fae909333a9b09c11cc59b36/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_2_fastqc.zip 586/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/b8f6d919241e32951b6b905167e1c0/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.pos.DupRate.xls 1654/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/416650e5ba48bd0feb4653058495aa/aih-tih-sc-55b175-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 496/aih-tih-sc-55b175-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/6a57536cab59af11e70343fa92b09e/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.read_distribution.txt 1273/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/d40234dd676a7a667349ca7276d33c/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.lc_extrap.txt 2181/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/2dbfa37e35f3f6f84fe14b3b83d7fe/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 464/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/646d789456273cff9b76120acb8298/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_2_fastqc.zip 762/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/ccfdff11662fa4bac6c518ba642857/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 928/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/c1edb1921dc7843eab6c5ca1eaee7b/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.junction_annotation.log 1247/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/7e51b2ce3724580dc16aad37c8a689/NTC_0001_0001_A23WJ53LT4_1.read_distribution.txt 1251/NTC_0001_0001_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/1e6f29b02cda719a401c31875a8ec1/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.log 233/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/09f67d95aa178742ee84b663ec8d82/NTC_0001_0001_A23WJ53LT4_1.log 195/NTC_0001_0001_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/b118892a939ef3f5b1188399031feb/aih-tih-sc-284856-R1_A23WJ53LT4_1.fastp.html 103/aih-tih-sc-284856-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/eb4031fc7b2fb0bc0f28b92393eaba/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1623/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/4276fa583289fac0809f0e1c261af5/aih-tih-sc-af602e-R1_A23WJ53LT4_1.read_distribution.txt 1334/aih-tih-sc-af602e-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/5cb92b15b497948be69c58a5c2a915/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_kallisto_mqc.tsv 358/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/a1b3173b2f24853e155defc6e5804b/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_kallisto_mqc.tsv 364/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/3aead223bad4b0580015100576de61/aih-tih-sc-06a169-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 456/aih-tih-sc-06a169-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/2c494dbde5ab7421c2ae2300cf3899/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 545/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/c3f8ea6b321bb2d26a8b75b0ad9f2c/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_preseq_mqc.tsv 2269/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/9c55959dbba4f586583df48e003343/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.infer_experiment.txt 1025/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/ef069cdc28d4c7bbd54f6b1b167ddb/aih-tih-sc-804b22-R1_A23WJ53LT4_1.attempt1.command.log 2073/aih-tih-sc-804b22-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/c916b6cddbfc99db8bbbbe7a68ce5d/aih-tih-sc-331e97-R1_A23WJ53LT4_1_preseq_mqc.tsv 2212/aih-tih-sc-331e97-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/146ef95942121298ef00409fedc22a/aih-tih-sc-ced210-R1_A23WJ53LT4_1_2_fastqc.zip 680/aih-tih-sc-ced210-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/bd3082dfcf9f4894aa52e5721115d0/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1414/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/b649f2aa71e4e06a0cc8f39aec970f/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_preseq_mqc.tsv 2218/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/28c6e566608a1c99aa2ae5f5ed5e93/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_kallisto_mqc.tsv 354/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/db16dd744ca7c1a87fbfdadc11c964/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.junction_annotation.log 1193/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/1ac4363383115db381e078b63c0fc8/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.junction_annotation.log 1232/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/de8c992714e8c5893603b64ad54638/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_kallisto_mqc.tsv 332/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/aaca908d9b74d5306ec2bd32fef892/aih-tih-sc-331e97-R1_A23WJ53LT4_1.lc_extrap.txt 2116/aih-tih-sc-331e97-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/c2083cd39ecd6fad0a7bf075239984/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_preseq_mqc.tsv 2233/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/6e6554fb38be1b3dac3552bbf473c5/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2377/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/07a162ed922e611318396795da887f/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.attempt1.command.log 2029/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/f64f7377a4592d76edc57f8e3f2199/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_2_fastqc.zip 670/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/78f3e7723e4842a40298f03b5e28e4/aih-tih-sc-606237-R1_A23WJ53LT4_1_contamination_mqc.tsv 1816/aih-tih-sc-606237-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/9c22f9291598616fc27525a3752487/aih-tih-sc-488877-R1_A23WJ53LT4_1.md.bam.metrics 1872/aih-tih-sc-488877-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/179bd9c8b15aec9292d79db5e195bc/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_contamination_mqc.tsv 1752/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/6e03585513d1780a28e0e7b728b3fd/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1936/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/ab230ebb9e6f90a6cc6546dd474f8c/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_kallisto_mqc.tsv 367/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/6dbb82e220baf0a774c7d651ab5fec/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.fastp.json 26/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/d5d08758255486c0c557d54e37ab88/aih-tih-sc-da460d-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1978/aih-tih-sc-da460d-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/482722f8b87f2f568733d2eabb7eaf/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.lc_extrap.txt 2173/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/3e3b1d93c343e4dab028ae370d7bc6/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.infer_experiment.txt 1028/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/6e091b820e7d2a149839b31c0d412e/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_contamination_mqc.tsv 1825/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/116ad5a24269becee9ce48c920ac56/aih-tih-sc-284856-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 395/aih-tih-sc-284856-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/b19f04a64cd982971700cb036226be/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 510/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/d40234dd676a7a667349ca7276d33c/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.attempt1.command.log 2085/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/d39c5c0518e30fa5f48f3f05d6e015/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_1_fastqc.zip 649/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/a6c7bb2fe748dcc54e5b13bd007179/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.infer_experiment.txt 1023/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/9e27996891e9bd3e2cfadc537c173f/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2014/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/0fca101b768283c4c9606ddc3d0192/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.inner_distance_freq.txt 1129/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/0e77f4b1b96022bfddef6c47c25b82/aih-tih-sc-bec563-R1_A23WJ53LT4_1.pos.DupRate.xls 1679/aih-tih-sc-bec563-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/cd98b326a224c148092070d093aaa7/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_contamination_mqc.tsv 1811/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/20c3de14120b5530ace3c386cf32f0/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.attempt1.command.log 2042/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/215f5b679a014f13a9ab179f6556cf/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.attempt1.command.log 2081/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/498afb7826e239e0e393c47f31174c/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_preseq_mqc.tsv 2230/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/e03d778989310adaea80d7dc46c6ab/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Log.final.out 781/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/90b454b57343be6f2d80388875de68/aih-tih-sc-560d56-R1_A23WJ53LT4_1.Log.final.out 784/aih-tih-sc-560d56-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/3319c6a8e871d20e8d42c7292fc8ce/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.md.bam.metrics 1884/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/a3feb0c9fe065177406f405c4ed61e/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 432/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/179d0dd3fc32aa8e616d9ff2ada90c/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.pos.DupRate.xls 1702/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/a566e4a020536cf9df6a612fc59e17/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.ReadsPerGene.out.tab 949/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/dffc931efa2941c607d14f300d7235/aih-tih-sc-58b830-R1_A23WJ53LT4_1_1_fastqc.zip 625/aih-tih-sc-58b830-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/0c436e708ae3a1a960fd9872333e04/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1634/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/e6684f9752ecb48fe53b896bb7939f/aih-tih-sc-408cca-R1_A23WJ53LT4_1.fastp.html 132/aih-tih-sc-408cca-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/7912f363f4b0bbd1bb85b61f935803/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.infer_experiment.txt 1027/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/47682aca1a1d5c539a8b9cd02483e8/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Log.final.out 800/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/95695b6905216e1bc1502026c365c9/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.pos.DupRate.xls 1658/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/a5baa73cc507449deb4477f1fb6b5f/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.pos.DupRate.xls 1668/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/ab63c9c95bc3eee9478b2d5550c451/aih-tih-sc-560d56-R1_A23WJ53LT4_1_preseq_mqc.tsv 2232/aih-tih-sc-560d56-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/e3de02e3b5a53b9fd12864a7421ae6/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.lc_extrap.txt 2195/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/f1a622745711baa0e848bbbfc409ce/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.inner_distance_freq.txt 1070/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/132cc9a08b38440b544796f615ad8d/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1929/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/5a0260c448c9066609655edaa29ea8/aih-tih-sc-606237-R1_A23WJ53LT4_1.fastp.json 63/aih-tih-sc-606237-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/a1e173a7c4c2f3c12313844d74e759/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.log 243/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/e074e1b9989c6361e208908543c27f/aih-tih-sc-408cca-R1_A23WJ53LT4_1_2_fastqc.zip 636/aih-tih-sc-408cca-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/9af60b8c59e10b2b04e3f7ebd4a6b9/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1943/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/4446244d60e0b23a16c5d3c1d17926/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2385/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/0b535f7358f463ebef63abc8583620/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1405/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/3deebd059c7fed21cf9e0b6f67541c/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 442/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/e8eeb2c566f768f6ec0d979cbaf7b9/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2338/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/332d702c50c023d3c67e9b74985bc8/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1361/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/f6de05722a550463a559ec739740f6/aih-tih-sc-06a169-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1957/aih-tih-sc-06a169-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/e40d24ce0affbc38b0a0a81c96a79c/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1952/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/88e481d2d30fae0d9b1fccdbbc0642/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.Log.final.out 858/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/8b12d563d827674e0d3b48f2adf68a/aih-tih-sc-965752-R1_A23WJ53LT4_1.inner_distance_freq.txt 1115/aih-tih-sc-965752-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/72e1edd2d28d1e06625dffa0affa00/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 465/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/57d4d7ac9e474587b84db5616f04fd/aih-tih-sc-488877-R1_A23WJ53LT4_1.infer_experiment.txt 1005/aih-tih-sc-488877-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/2ebfe6fbd205a39a751dbf01c37fb2/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.fastp.html 178/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/d4f51e4e926b21f6a4a004a7df67e0/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fastp.html 170/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/66f99fe47335a4786a254ba5de1183/aih-tih-sc-55b175-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 962/aih-tih-sc-55b175-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/c1ce550fb82fe86c9f6b8a495efa6d/aih-tih-sc-674b78-R1_A23WJ53LT4_1.infer_experiment.txt 1022/aih-tih-sc-674b78-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/4077b367ea0ad560291e186ee60ef2/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.pos.DupRate.xls 1699/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/44c03633e030d4e3edb345b108d83c/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.bam_stat.txt 1461/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/9dd126d3db540b7ad99941aba606de/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.infer_experiment.txt 1034/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/7d8ebabcf5098c21dd70308401e443/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_preseq_mqc.tsv 2254/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/d6148ffb7b834abf0602e252f423c6/aih-tih-sc-488877-R1_A23WJ53LT4_1_kallisto_mqc.tsv 340/aih-tih-sc-488877-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/48c469ac1365ea9253ddfaa096b078/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1386/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/6f10f17f38bc418771cdf165bed8da/aih-tih-sc-550807-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1556/aih-tih-sc-550807-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e0a310d4e4d61dccb20b929125f612/aih-tih-sc-2905df-R1_A23WJ53LT4_1.Log.final.out 819/aih-tih-sc-2905df-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/50ba594174b0fe54289ed7bbc7b0f5/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.junction_annotation.log 1188/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/7ae423e828f70399249bb847de3a53/aih-tih-sc-06a169-R1_A23WJ53LT4_1.bam_stat.txt 1473/aih-tih-sc-06a169-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/2828417d3384690c51c81749488a53/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2015/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/ac457fca2b72d52f871edb0db95d51/aih-tih-sc-674b78-R1_A23WJ53LT4_1.fastp.json 77/aih-tih-sc-674b78-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/bfb9e40c67b1940435fa2a79803975/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_1_fastqc.zip 603/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/a7b691bc01bc0edbc49507c67d7c74/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_2_fastqc.zip 592/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/eaff063e3692921eeb5ed94293cd43/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1561/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/2dbee31d70f2e5af8a2b9665e80f26/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.pos.DupRate.xls 1656/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/18aea75e29996fef7efa3a4486bcf7/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.junction_annotation.log 1173/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/1295d1d9ee320eaceb0e7d934ae6c5/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 402/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/409fbb04c58d70bda5845a66db3a05/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 540/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/0a4d5d14110c7f27d6a5c54c9e1146/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.log 247/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/8481a7bb850bb1e65f6d4d91a980e4/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_kallisto_mqc.tsv 304/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/88f458a83d0639fa608570b26998c3/aih-tih-sc-965752-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1583/aih-tih-sc-965752-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/b1a2985fb0bb514a43af196a5533db/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.log 221/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/4bb0bb0459a97735a90e00468a59f9/aih-tih-sc-669302-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1621/aih-tih-sc-669302-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/8a56db4682edaf4fab9ed7fe868844/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.log 273/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/24e542235a58fc6cdb1332d23fe6b5/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.log 269/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/f256024addc1207dc9c3144aa85817/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.md.bam.metrics 1896/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/60fcd4e5bcbeddc7f27ea22ff50690/aih-tih-sc-284856-R1_A23WJ53LT4_1_preseq_mqc.tsv 2215/aih-tih-sc-284856-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/8d865b731a0a558c15c7de1399d80b/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.fastp.html 111/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/26d9b53549f1f8f2ba0542fec6111f/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_2_fastqc.zip 594/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/5fae99ea06359f897e1e4459529d7c/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.attempt1.command.log 2056/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/6af75da9302cec2e20c7a59535abad/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.infer_experiment.txt 1035/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/952fb5aad9d871657565f7b6a0f5f5/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_2_fastqc.zip 734/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/94ca776f7670c28ecbfffe780110cd/aih-tih-sc-fee548-R1_A23WJ53LT4_1.md.bam.metrics 1877/aih-tih-sc-fee548-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/d452a4ca49d8e076a41c16ed904f05/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1954/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/9b44cce073ff30b0f1792806990acb/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.bam_stat.txt 1493/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/f34b503e1ae726769d7223657b0fbf/aih-tih-sc-835699-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2355/aih-tih-sc-835699-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/0d4fb8131940d36fe438b0fd01cac0/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_1_fastqc.zip 645/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/22bed80e2f308b63e8ed2b4ddd7331/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_preseq_mqc.tsv 2225/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/ef720cdd74a7040dfa70132ccd9c6b/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.inner_distance_freq.txt 1067/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/b5fc27b8c03885c2166f3a768e167b/aih-tih-sc-af602e-R1_A23WJ53LT4_1.fastp.json 84/aih-tih-sc-af602e-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/69e000bdd36ec06205d5884ca9f296/aih-tih-sc-7de750-R1_A23WJ53LT4_1.Log.final.out 822/aih-tih-sc-7de750-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/bf5ce9f70b1989ff267f1bc740427f/aih-tih-sc-951f98-R1_A23WJ53LT4_1.junction_annotation.log 1227/aih-tih-sc-951f98-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/840dd3816d7c9ac3fe2301c987987c/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_1_fastqc.zip 667/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/416650e5ba48bd0feb4653058495aa/aih-tih-sc-55b175-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 495/aih-tih-sc-55b175-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/5b46cadbf07d5bf5e55393570c2625/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2322/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/182a312bf8b75da751c87faa6b6508/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.inner_distance_freq.txt 1137/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/a4b9c43d5b4a499b4761aa779649d3/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.infer_experiment.txt 1052/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/e9ce5d40e72f5cdb34b556f7e337ff/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2360/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/37aea75a0314c8503274f1132b3d8e/aih-tih-sc-284856-R1_A23WJ53LT4_1.lc_extrap.txt 2119/aih-tih-sc-284856-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/e3d319e208e1ff26984eb33adb5349/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.attempt2.command.log 2027/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/bb7a2d23b3cd7f5c3178f4c4984d46/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.bam_stat.txt 1513/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/cafb2f2c68be176eb38e2088fcab17/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.fastp.html 194/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/73ef337329e79178def43d57f7bd93/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2332/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/7f0b12c243fdf8cbd636ce9eb410d9/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 870/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/7ffc72243d7d1115c7e76e664b7436/aih-tih-sc-ced210-R1_A23WJ53LT4_1.junction_annotation.log 1235/aih-tih-sc-ced210-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/43c796e110bfab5220c82c2e6e1af2/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.fastp.json 5/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/d10e664d55e920fe88a836d3f7a175/aih-tih-sc-669302-R1_A23WJ53LT4_1.bam_stat.txt 1525/aih-tih-sc-669302-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/640f8926aeb44f008a7c10f8c4e596/aih-tih-sc-7de750-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1977/aih-tih-sc-7de750-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/c29b587ea1062d4179261033591bb0/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.fastp.html 183/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/0efbacf3b319f2859571277ced775e/NTC_0001_0001_A23WJ53LT4_1.fastp.json 3/NTC_0001_0001_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/d4982b3b27807bbaaea54d55f0328a/aih-tih-sc-bec563-R1_A23WJ53LT4_1.fastp.html 188/aih-tih-sc-bec563-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/cd185bc1406d4a9d8bea6cd0d28daf/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.log 268/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/69e000bdd36ec06205d5884ca9f296/aih-tih-sc-7de750-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 918/aih-tih-sc-7de750-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/1c372a4e3519f0be66df724f6121fb/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_kallisto_mqc.tsv 325/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/ba3f7d4ee5fa76c56adaff2e766cc7/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.junction_annotation.log 1199/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/2a76e37f31fe1bb060ad9b36bec724/aih-tih-sc-606237-R1_A23WJ53LT4_1.inner_distance_freq.txt 1139/aih-tih-sc-606237-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/a7e34c33b2ccabfc7dc5edbcfd6b6e/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.fastp.json 6/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/9d1e9337f98cd8de3776e3cadcd78e/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_2_fastqc.zip 752/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/97d78b1f2167fcdc8c52178d7c9be6/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.junction_annotation.log 1158/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/4f40455d26cd0181ee769ab876112c/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.infer_experiment.txt 986/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/62a6a50469ee4ae31a597d2147c605/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.lc_extrap.txt 2202/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/d6177266189fc50bc652d42c8f141c/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 413/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/8bed2d420af82fb6191249d62d01fc/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.junction_annotation.log 1234/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/6c509b285a33ba46637fa6052c7164/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.lc_extrap.txt 2150/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/ec697ddee1b31846734bda5df4d58c/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.fastp.html 113/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/534ca45dcb5f5cda3a26ecca88fc01/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.log 225/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/a7accf1bde11c0d043d8c3da8e2403/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.read_distribution.txt 1344/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/3dd252065fabf3d738d904ac31128b/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.md.bam.metrics 1829/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/2c8d278bba599d62348dda095de675/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.log 277/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/2b426af3778acd69ccbc1e38953c7c/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.read_distribution.txt 1288/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/b5a2445c96f2f774c526539a252057/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 901/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/03fea4fe27076ec7b933be0363b6bd/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 940/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/e2ff67793d3bf44c6fb3c5c60ad790/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1554/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/e96dd2958a88d44fbac42f7b8a329c/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1418/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/50ca75aacd54dde06930954d831e3e/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.Log.final.out 812/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/1eed7f8e77b9c94b74316773428b42/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.md.bam.metrics 1874/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/f73a8f61f5e6aaacb1065e0882feb5/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.Log.final.out 825/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/4ada2a7c7819c19d56241a3281c7ae/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.Log.final.out 798/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/94683d11ead20921b36fe784a2dee8/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 519/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/81d3a5da479244842c4a4b5443c198/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.read_distribution.txt 1271/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/2f3e602b1a681fd6751ef93ff1d1b8/aih-tih-sc-2905df-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2345/aih-tih-sc-2905df-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/73b2f6ec6a8b5424e1d07d6b49ecbe/aih-tih-sc-06a169-R1_A23WJ53LT4_1.fastp.json 34/aih-tih-sc-06a169-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/1257d7f22d0ac4a0030aad2bb8a064/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_kallisto_mqc.tsv 324/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/2aa650e7939d4c0a463de6bf02703c/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.infer_experiment.txt 998/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/9353fc17b51719ac6e908e99b94847/aih-tih-sc-fee548-R1_A23WJ53LT4_1_contamination_mqc.tsv 1778/aih-tih-sc-fee548-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/4a4cb0d8d89f6777599ea8b0938b8d/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.inner_distance_freq.txt 1065/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/d859793b3021c4bed804e6751039a2/aih-tih-sc-669302-R1_A23WJ53LT4_1.pos.DupRate.xls 1722/aih-tih-sc-669302-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/8e56d559f4a26595dfcc3a716f6670/aih-tih-sc-ced210-R1_A23WJ53LT4_1.read_distribution.txt 1313/aih-tih-sc-ced210-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/a46b360f6442fc1a4724a4432ea848/aih-tih-sc-7de750-R1_A23WJ53LT4_1.log 246/aih-tih-sc-7de750-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/1429bf5fed3f12b785025a578fe891/aih-tih-sc-331e97-R1_A23WJ53LT4_1.junction_annotation.log 1156/aih-tih-sc-331e97-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/9abe67c4de8bf28b3d2e39c489b11d/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_preseq_mqc.tsv 2267/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/fe49499f7e7c7c13ee3f1fe0d98f51/aih-tih-sc-488877-R1_A23WJ53LT4_1.log 244/aih-tih-sc-488877-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/34448619352499b76b05036d983e54/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.junction_annotation.log 1201/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/3a0ff67a1f5a6a3bea0a66ad2cd32b/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 874/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/07a9356fe33ba554fc9d30a0b53c92/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.lc_extrap.txt 2184/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/684288e68b3febda093ab76d4c4540/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_preseq_mqc.tsv 2261/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/7fe325a66b999f0b9c53c420b190ce/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.pos.DupRate.xls 1709/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/effa666ad2e98da90cd7e37d8ff08f/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.md.bam.metrics 1854/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/196d1b7092fdf9ddc706dd54881047/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.pos.DupRate.xls 1698/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/9446de7408b0a778467528f34be9ec/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 910/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/9e7008247534b02aaad714b12b7686/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 451/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/772c93703ccae5bb0528924f60ad62/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1430/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/d3945d85f3c014aaf1d80216fd1b51/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.bam_stat.txt 1478/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/9316e220516e3d9be20182cb9f6f46/aih-tih-sc-bec563-R1_A23WJ53LT4_1.junction_annotation.log 1202/aih-tih-sc-bec563-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/a5f40d0623243083283fb0aa20f1db/aih-tih-sc-af602e-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 960/aih-tih-sc-af602e-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/bb2124417038379c73e38026ab00f1/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.bam_stat.txt 1465/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/eb1b4bc33e6f99dbd09d96c103560c/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.Log.final.out 794/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/86a32cbbd55921edc09b43b2516f09/aih-tih-sc-488877-R1_A23WJ53LT4_1.fastp.json 59/aih-tih-sc-488877-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/f6211dd0b1966afea5bdb0f2390fcf/aih-tih-sc-331e97-R1_A23WJ53LT4_1.read_distribution.txt 1252/aih-tih-sc-331e97-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/d8c0aa8d8e58c9659ce5590d104f23/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.bam_stat.txt 1538/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/5a0260c448c9066609655edaa29ea8/aih-tih-sc-606237-R1_A23WJ53LT4_1.fastp.html 159/aih-tih-sc-606237-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/8d3d8c06d4d00e1e33964dc9c48ca9/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_kallisto_mqc.tsv 322/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/53ea48ef0a827d2eb3791226cdce97/aih-tih-sc-606237-R1_A23WJ53LT4_1.read_distribution.txt 1316/aih-tih-sc-606237-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/1295d1d9ee320eaceb0e7d934ae6c5/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 401/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/8484a4abd3fff18b10ebb14514a352/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.fastp.html 131/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/c0cbc78df051f500b6f3fa331a8b9f/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.log 203/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/18f6ba4edcdc30a4d4b79ec1baa49d/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Log.final.out 821/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/d2dec673635971be0d5910c30d54e8/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 467/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/ea7aeb352079c53a77b660f49e7e4d/aih-tih-sc-64cace-R1_A23WJ53LT4_1_preseq_mqc.tsv 2217/aih-tih-sc-64cace-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/437e57106c745b3d98e071f5a94495/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.fastp.json 38/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/8934bbd6f44c79940b6d46f0832985/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_kallisto_mqc.tsv 298/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/7f6725a36f376d8e7ceff198d67b47/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.md.bam.metrics 1893/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/806b7ae3bb25bf363490d8df28acbc/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_1_fastqc.zip 693/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/1bfe6fb5d9ef3238d1b45fbc700606/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.log 260/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/d0b4fe40afea9dda91d5e98765fd51/aih-tih-sc-ced210-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2363/aih-tih-sc-ced210-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/f50e2bd4fe13b63cbe7cdd7be243ab/aih-tih-sc-06a169-R1_A23WJ53LT4_1.md.bam.metrics 1860/aih-tih-sc-06a169-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/630479e18ee82a0bf0eb09bd623073/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 571/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/ed38023212e2925411625cb6cba8ec/aih-tih-sc-488877-R1_A23WJ53LT4_1_1_fastqc.zip 681/aih-tih-sc-488877-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/b120529f2ccd22ae2e399bbe6e2176/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.md.bam.metrics 1859/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/43d0eeeb57f6e794c1328833b6aa50/aih-tih-sc-331e97-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 868/aih-tih-sc-331e97-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/64677b33aae4ac2c23906ceaa41c5e/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2317/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/dcc8bd642a04bfd5e8b752b8635381/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.inner_distance_freq.txt 1085/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/88d2f7e347ef32abf9a5451fdfced4/aih-tih-sc-835699-R1_A23WJ53LT4_1.inner_distance_freq.txt 1142/aih-tih-sc-835699-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/f8d0d74a4bb1c8ea1b49755bf3f874/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 882/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/6b3f027124f6a4ea65c7a9a13997c3/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.fastp.json 68/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/5acb1f9c4adc969d11792d01dd8edf/NTC_0001_0001_A23WJ53LT4_1_1_fastqc.zip 579/NTC_0001_0001_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/a7fab883b1651829c924db8f29ae91/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.Log.final.out 849/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/ec8f1cc702c1ef1b23add098fe830e/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1946/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/ae0cb1e26f812e4e62eb8bb53c82c8/aih-tih-sc-606237-R1_A23WJ53LT4_1_kallisto_mqc.tsv 370/aih-tih-sc-606237-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/fc859f375bb515051697e4901dc9fd/aih-tih-sc-804b22-R1_A23WJ53LT4_1_preseq_mqc.tsv 2265/aih-tih-sc-804b22-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/6e9176c24a2072586d904e3bdda3c3/aih-tih-sc-965752-R1_A23WJ53LT4_1.infer_experiment.txt 1018/aih-tih-sc-965752-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/c50893e14aa31ee76c864cd2a8231a/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.bam_stat.txt 1505/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/b7c7f33eceeb0444416a7da85b2f59/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_kallisto_mqc.tsv 351/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/c2/842dfe63d55b47b31d05a9f806345e/methods_description_mqc.yaml 1/methods_description_mqc.yaml")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/95e7371b22ce664fac854f6ef7f723/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.junction_annotation.log 1162/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/7ea4bc252f714c549e2f25f7b885e0/aih-tih-sc-55b175-R1_A23WJ53LT4_1.pos.DupRate.xls 1730/aih-tih-sc-55b175-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/e7e1ce4293265e7122b6c62a8c20bd/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1976/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/ae21011283c150251cfc34c6dd5bcf/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 559/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/1949095b224f729569e047d1cb6e7b/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.fastp.json 47/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/9a38257650726e881f0ec9a9296bd5/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.Log.final.out 861/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/efe3b52427c84aae78760ae5d265a1/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1996/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/eafc4ad1eb1a358854e1441e35ccdb/aih-tih-sc-951f98-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2341/aih-tih-sc-951f98-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/153688ee2989d879459907d9e5bc17/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.md.bam.metrics 1878/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/4fb0dfb946461e3cff01832b9c27e5/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 489/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/2767a57683227bc3f82d50926f4ad2/aih-tih-sc-fee548-R1_A23WJ53LT4_1_kallisto_mqc.tsv 350/aih-tih-sc-fee548-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/9125c049f9beb2d1b181efe68c18b0/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.log 288/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/479b2e66882e3c6532ac2ecdebd69f/aih-tih-sc-331e97-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1540/aih-tih-sc-331e97-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/28e55c7d2d3be7bf1f53282eb03b09/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.inner_distance_freq.txt 1099/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/414d781812c15a8d1e5e8f7566a121/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.Log.final.out 785/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/c3d0fa446caded6dab308be49c8765/aih-tih-sc-06a169-R1_A23WJ53LT4_1_contamination_mqc.tsv 1776/aih-tih-sc-06a169-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/79f89dc3a88dd07853d0598b90b7b5/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.read_distribution.txt 1292/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/2e3a5f4e71e7d382d6300a13f27c4e/aih-tih-sc-bec563-R1_A23WJ53LT4_1.lc_extrap.txt 2170/aih-tih-sc-bec563-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/44085a9a5d4ff5630656a4a02c4ca8/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.pos.DupRate.xls 1646/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/4416d81cd168f0d19e2610cbd3735b/aih-tih-sc-804b22-R1_A23WJ53LT4_1_2_fastqc.zip 652/aih-tih-sc-804b22-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/9664e3ffc4bc8c0aef5a0993f88919/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.infer_experiment.txt 1019/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/f64f7377a4592d76edc57f8e3f2199/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_1_fastqc.zip 669/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/8944c8e8ad05cb86da71166c843491/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1568/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/3b609078848aec4a487f13b55ed603/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_1_fastqc.zip 749/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/5e97dbc5f9538a08ea54e60e77cf75/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.md.bam.metrics 1857/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/8c8ee90268af3e7e8c05b6938cbf8b/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_1_fastqc.zip 739/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/27988997e36b42a911c4607dd132ac/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.bam_stat.txt 1482/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/1b78a3e9f55ef951abf0dd289165e4/aih-tih-sc-fee548-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1599/aih-tih-sc-fee548-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/888472085969ac28f8ccec4976dfc3/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.pos.DupRate.xls 1692/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/a2784c61a9bfbabbe649af5076da23/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.bam_stat.txt 1517/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/33528ff7e0b9177d878e0c04986db0/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.read_distribution.txt 1324/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/f4cb185612182fe596dacb9b4b05a4/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1949/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/d4982b3b27807bbaaea54d55f0328a/aih-tih-sc-bec563-R1_A23WJ53LT4_1.fastp.json 92/aih-tih-sc-bec563-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/c7884ae35db5e88f9f606294b8fe92/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.md.bam.metrics 1912/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/ff175553d368b0ca12ab565493328c/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1986/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/794435646f89418a5238905aee5a0f/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1610/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/2aa40f7de0c8af7c8fae0634bc4894/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.lc_extrap.txt 2180/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/ef320fa5bc07b0eccef21d41286bad/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 475/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/307aaeaea53bc22da13d6839357904/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 504/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/00de51d3c7233626412f886da782ad/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.read_distribution.txt 1287/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/52d248a7b65235070c9d636583305a/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.lc_extrap.txt 2139/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/98f4bcac882baea31492872d0cb713/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_1_fastqc.zip 595/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/1aff28d033a7895f3b83702da002c0/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_preseq_mqc.tsv 2250/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/564992a64ba9f685b732ff5d809d30/aih-tih-sc-af602e-R1_A23WJ53LT4_1.inner_distance_freq.txt 1151/aih-tih-sc-af602e-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/da131e36be5661441209eae8eff584/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1947/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/f4eddc7fe7f2f2542480f23c08573f/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.fastp.json 49/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/91f505d3e6dae82503475eedd06311/aih-tih-sc-387c73-R1_A23WJ53LT4_1.lc_extrap.txt 2189/aih-tih-sc-387c73-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/7d7fe0a464472d8c07c56298e54d2a/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.fastp.json 18/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/54baeece76ea7870c3c24bde6352bf/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.inner_distance_freq.txt 1061/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/dc8afe3c712749ac2a3a2f02cf6a33/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.lc_extrap.txt 2148/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/940e4d530bee73ce3f50b20d0cebf6/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1363/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/cf68f0561180dbabc18b7e764adc4a/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.log 239/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/b19f04a64cd982971700cb036226be/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 509/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/c84931b3d551c33cb20aedc7d4884e/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_kallisto_mqc.tsv 365/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/ae21011283c150251cfc34c6dd5bcf/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 560/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/8ac4f026d3b102aca8c2f9b7ef9796/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.bam_stat.txt 1519/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/76dd531159ea22efe1c4a10ffb65e9/aih-tih-sc-488877-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1392/aih-tih-sc-488877-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/1c8371f78cd67c8e1fbf12d56cd6be/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1379/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/019e8bf251ca370352519105e0b15e/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.read_distribution.txt 1297/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/020cf69042bb509a78dfb32c6a1e30/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.fastp.json 51/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/d9c985d44564bd5ff4b7368eb66eb0/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.pos.DupRate.xls 1671/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/704df60ebe78023e1d9d4c445f32ea/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2321/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/090c3bdfeb9feee96b432d353f4060/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.log 290/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/284a03656a2b22117d09aa301288a3/aih-tih-sc-7de750-R1_A23WJ53LT4_1.md.bam.metrics 1880/aih-tih-sc-7de750-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/68b4f19a1e4c1566e11ecd8c753711/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.fastp.html 107/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/2e221261bc782da9449d726ae0488c/aih-tih-sc-835699-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1617/aih-tih-sc-835699-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/68d4d6f76c571b53fdeecd3d8676da/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_1_fastqc.zip 683/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/5059ff17e6de7906176415e169708e/aih-tih-sc-bec563-R1_A23WJ53LT4_1.read_distribution.txt 1294/aih-tih-sc-bec563-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/d17b23fac9fb9d04f3f7a34f4ede70/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 942/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/58d4aee3f15de7e359105e2338147b/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.infer_experiment.txt 999/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/acff6c081cacd72ba183aca5cfca74/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_contamination_mqc.tsv 1805/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/3deebd059c7fed21cf9e0b6f67541c/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 441/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/50ca75aacd54dde06930954d831e3e/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 908/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/2557cdb4b1ec7c21b1529eb884de31/aih-tih-sc-965752-R1_A23WJ53LT4_1_preseq_mqc.tsv 2258/aih-tih-sc-965752-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/9935cd0d507c9257b663db21c434f3/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.inner_distance_freq.txt 1100/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/e03b6f659f0993ec6bdbe08d5f1e52/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.pos.DupRate.xls 1661/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/7429fc9dc61b1642ae41e6a44a7973/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2349/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/37c1f3cf18d69eb8815cc6f5f7b53b/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.log 217/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/5c04732bf4ed04a9bb6920f48543e0/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_contamination_mqc.tsv 1773/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/4f87850ea2e4b4413bca9c54bca56a/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.lc_extrap.txt 2172/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/d2dec673635971be0d5910c30d54e8/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 468/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/f036a31cc22dd804b0b7612a3d90e2/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.infer_experiment.txt 1006/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/73a2192f5d19e153c5aabcde3cb21a/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.bam_stat.txt 1504/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/17c86dcf9a98cfd4dce7e81fb25ba2/aih-tih-sc-550807-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 407/aih-tih-sc-550807-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/ed38023212e2925411625cb6cba8ec/aih-tih-sc-488877-R1_A23WJ53LT4_1_2_fastqc.zip 682/aih-tih-sc-488877-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/9e7008247534b02aaad714b12b7686/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 452/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/72e1edd2d28d1e06625dffa0affa00/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 466/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/4fd81a6f843863420d9b2e16ed0743/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1548/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/32565e1355a6010a747c7c410a9a10/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.Log.final.out 779/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/3e4d19cfd9594b2606a7e327cd9ec0/aih-tih-sc-560d56-R1_A23WJ53LT4_1.log 209/aih-tih-sc-560d56-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/90d19a6d659b98d6e226b01f264c07/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.log 282/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/84508860ad6918a3e43bdb6fcf4e88/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.attempt1.command.log 2038/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/b59685105d55c9b8d323fad61336b4/aih-tih-sc-bec563-R1_A23WJ53LT4_1_preseq_mqc.tsv 2266/aih-tih-sc-bec563-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/178411a9122b7ead03dfc265ee9ba9/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.pos.DupRate.xls 1696/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/3b2a63b436726bbad4c80d293f0d74/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.inner_distance_freq.txt 1098/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/fa6564e5169243235df7d25386b65c/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.pos.DupRate.xls 1712/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/741f7bf70acf29754f852f5620c519/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.md.bam.metrics 1846/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/10c423cbc86663e867485304c61670/aih-tih-sc-804b22-R1_A23WJ53LT4_1.inner_distance_freq.txt 1116/aih-tih-sc-804b22-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/f189fda4c8ffae297bcb0cdf84cc1f/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.inner_distance_freq.txt 1152/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/91eb0e6d694decf0b99add572dd36b/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2354/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/273c0682ea4302e7fcaee368b4de06/aih-tih-sc-fee548-R1_A23WJ53LT4_1.fastp.json 73/aih-tih-sc-fee548-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/d63f1f8c6c63c96869f10b95a2a886/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.pos.DupRate.xls 1666/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/d6177266189fc50bc652d42c8f141c/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 414/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/381868707cd6e6d2afd9d557242b09/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.attempt1.command.log 2075/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/329d1b2c01b08fd841ea5109d0b2c1/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_kallisto_mqc.tsv 339/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/1ec48816e1cef473ccbc8477e197e1/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_2_fastqc.zip 692/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/453b8eba588532a085d03d50035842/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.junction_annotation.log 1190/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/a34f9a4d1b3e70e53d5628f699bcac/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.pos.DupRate.xls 1644/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/f0d62162a467f7e84d5f8d07a5d617/aih-tih-sc-284856-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1927/aih-tih-sc-284856-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/c0140a07023652ab3c3ca1b7e226ae/aih-tih-sc-606237-R1_A23WJ53LT4_1.lc_extrap.txt 2210/aih-tih-sc-606237-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/54b08e94f364f340ef016d7ef8f304/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.fastp.html 152/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/286800088e0359039ec363db35fb7a/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2370/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/374e8da29908a4450876b0e2e037cd/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1961/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/873f6dd3b2af4ee914d383d50e82be/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.fastp.json 9/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/754cd4f1270b34fcd8b46b74e8b972/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.bam_stat.txt 1496/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/ad1b28bc0faedbcb665538e6296287/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.attempt1.command.log 2071/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/989e5ab51a16e48a87b2a90540a718/aih-tih-sc-674b78-R1_A23WJ53LT4_1.log 264/aih-tih-sc-674b78-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/044ccbd97b10a27f0bb689657bec4c/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_preseq_mqc.tsv 2235/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/17c86dcf9a98cfd4dce7e81fb25ba2/aih-tih-sc-550807-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 408/aih-tih-sc-550807-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/81b84e5f88a3f5084c1f6fd236b94a/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.infer_experiment.txt 1041/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/06a46d404d6e460769d61d24cb4f5e/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.infer_experiment.txt 996/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/0f54e61d5491360a1ed8da9ec341fd/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_1_fastqc.zip 741/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/4802dc9dea6319ecc98a10b33d26b6/NTC_0001_0001_A23WJ53LT4_1.junctionSaturation_plot.r 1347/NTC_0001_0001_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/0deb994ebfdefa91d11f2528c64841/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.fastp.html 117/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/2db6c0032639971e1bdfffc475b536/aih-tih-sc-674b78-R1_A23WJ53LT4_1_contamination_mqc.tsv 1788/aih-tih-sc-674b78-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/4fb0dfb946461e3cff01832b9c27e5/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 490/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/51ecbd6d25c70b27aa8db4e9cd6ee4/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2320/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/f29e66dfc9f7341daca69adcdc410d/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1959/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/ea555faabd7de887ecd5b4421da9cb/NTC_0001_0001_A23WJ53LT4_1.lc_extrap.txt 2115/NTC_0001_0001_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/0d0568fcf136eeade82c63270a6016/aih-tih-sc-64cace-R1_A23WJ53LT4_1.pos.DupRate.xls 1640/aih-tih-sc-64cace-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/23388faba4a6d2a53f702fa71dec75/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_kallisto_mqc.tsv 348/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/32b4048e1395a2192aae84e776b5d0/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_1_fastqc.zip 763/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/3dc69755c6ed1f11dea35d776d5d9d/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_preseq_mqc.tsv 2294/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/48e7b69e2d3655f4088f9086140d1a/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_1_fastqc.zip 765/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/da4d68c0d87c16662b6a2836e18d13/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.log 275/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/fa7c63ddae9b11dbf9b293194757eb/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.infer_experiment.txt 977/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/63597dcd3dea38eabdb8fa304eb8d6/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.attempt1.command.log 2022/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/3c212cc1b3103bcf2370b332144d31/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.pos.DupRate.xls 1689/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/233ece91e6f5ec657d76475e6614bc/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2358/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/d794bb11800f21f96f536dfca603c6/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.read_distribution.txt 1321/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/668fdad30a862ebd85a26c221f152d/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1602/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/01565d5ca3c57135376560d8ea3f5e/aih-tih-sc-64cace-R1_A23WJ53LT4_1.junction_annotation.log 1160/aih-tih-sc-64cace-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/0f571b72223a40be06efaf34e5ded4/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1408/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/d8def58e46616d9f2a6342c5a12a5c/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 885/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/722b35446b46d9a89cfd3f88b0213f/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.inner_distance_freq.txt 1086/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/f41e399318d09584ae0a542060dbfc/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.fastp.html 121/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/b2460ef2890c7a9511c9e5a8a3e17e/aih-tih-sc-387c73-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 551/aih-tih-sc-387c73-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/65478852bc37aaf8a3142244bea94d/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1441/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/195b03e640f9a7c6d5bbfda432f95a/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 493/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/8fc036340860ba55813c03635fe633/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.read_distribution.txt 1339/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/7a0d23cd80f10f666f8456a6dac9ee/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.md.bam.metrics 1919/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/f002511eca57d8242f3840597614b6/aih-tih-sc-606237-R1_A23WJ53LT4_1.bam_stat.txt 1533/aih-tih-sc-606237-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/e0a310d4e4d61dccb20b929125f612/aih-tih-sc-2905df-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 915/aih-tih-sc-2905df-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/9d91fb8521eb1e4f4f40baa3bdf528/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.bam_stat.txt 1497/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/f07e5c8360c733f924cc18545388f2/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.lc_extrap.txt 2198/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/4a257eda743b1538be142de94d6153/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.inner_distance_freq.txt 1153/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/f7e6be3f64a7c18a4c05432f066ee6/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_preseq_mqc.tsv 2237/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/c79d52ec7a433298310401a29c6f51/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1542/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/d6e50dbc3fd2695b978e43c3ea941a/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.lc_extrap.txt 2145/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/d48449fe97b771bdcab58fb5dc4d2e/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_kallisto_mqc.tsv 323/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/0f8cbfa1972fc02dc75fc2e3f97280/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2336/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/2c84af6f25d71699c8c0e8ee2cf81d/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.Log.final.out 828/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/5c51b2b0a18f1707c04d30920d86da/aih-tih-sc-331e97-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1924/aih-tih-sc-331e97-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/0fa538d5ed39e85b7d274fd7bdd01e/aih-tih-sc-951f98-R1_A23WJ53LT4_1_preseq_mqc.tsv 2286/aih-tih-sc-951f98-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/1aa36914922549c62e1a6b000cbea9/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1362/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/4544acf162a29bd8ab1e89c92959a3/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.lc_extrap.txt 2158/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/88b58e69d3fcfce01188576533fd56/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_preseq_mqc.tsv 2271/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/a4d86913d10b5be87939670278a734/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.fastp.html 146/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/50e47e13cfe23fe1bee0aec6638846/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1350/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/4cc47d6e5f5cb73bcbc24511d20054/aih-tih-sc-550807-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1933/aih-tih-sc-550807-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/2d2f968522a9b30365d531d0789129/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.fastp.json 22/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/74577547b3603c507b4b0b01050f53/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.md.bam.metrics 1863/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/f1dd4b58046db80e37e073aaaaeba5/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.infer_experiment.txt 1057/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/57204189081c14d3841566eb8f6653/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_kallisto_mqc.tsv 327/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/ca3c263b269889b281d7850ed91b2b/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.fastp.html 148/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/6b33cb06c08ef161381412d92b72bf/aih-tih-sc-560d56-R1_A23WJ53LT4_1.fastp.json 20/aih-tih-sc-560d56-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/082dfe1ee92b6c4cd324480b7c94ef/aih-tih-sc-674b78-R1_A23WJ53LT4_1_1_fastqc.zip 687/aih-tih-sc-674b78-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/eacf8e6956a0979e666c0000b7ff2f/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.infer_experiment.txt 993/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/16cc3bdae4d1481590a8d2853201e8/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1984/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/a566e4a020536cf9df6a612fc59e17/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.Log.final.out 853/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/9aaadf5bd855f3c921f430ba6cb1f5/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_kallisto_mqc.tsv 311/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/362fff259f4367bbfec7d40c653e49/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1589/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/cdb765cc0cd248b168256cc09d3f90/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2326/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/228f0facfd9154c32d8574fcf8c562/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.inner_distance_freq.txt 1083/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/2eed140207f1dfe0aa42363cf40b15/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.md.bam.metrics 1856/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/3fca20a38c251e24695b7441f85106/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.pos.DupRate.xls 1678/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/15073d6ee0a477dc8ea6bd9c4d8154/aih-tih-sc-55b175-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2018/aih-tih-sc-55b175-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/23d1f7933813c2ef402ea84c4a0ae9/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_contamination_mqc.tsv 1733/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/70fd1cfef6396448b7b73ad632118b/aih-tih-sc-284856-R1_A23WJ53LT4_1.read_distribution.txt 1255/aih-tih-sc-284856-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/545e092b3ee582c6450f8b20eac90f/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.pos.DupRate.xls 1655/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/3e1ec049df6ecdf82750c641e65f1b/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_2_fastqc.zip 628/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/03fea4fe27076ec7b933be0363b6bd/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.Log.final.out 844/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/642ff713a2f875bbe360de97d9a7ef/aih-tih-sc-965752-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1396/aih-tih-sc-965752-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/4e1ee32c49993c8920d7f550d858ad/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.log 289/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/6f28117f59f968c0f79884054fffca/aih-tih-sc-06a169-R1_A23WJ53LT4_1_2_fastqc.zip 656/aih-tih-sc-06a169-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/3d7041ca56466ca1d962fc1a570410/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1937/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/8a070a8718edbc1c7d996d8950205f/aih-tih-sc-488877-R1_A23WJ53LT4_1_contamination_mqc.tsv 1786/aih-tih-sc-488877-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/04fa301bf0c60810060e4914b05665/aih-tih-sc-951f98-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2003/aih-tih-sc-951f98-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/182e6f5972ee65fbb23a85f89b0a66/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.inner_distance_freq.txt 1148/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/269518dd50913c20b0625ca6274caa/aih-tih-sc-835699-R1_A23WJ53LT4_1.read_distribution.txt 1341/aih-tih-sc-835699-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/4d0ce25cead28be6efa3c47aea8c52/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1603/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/0e98d0c8960901eb2e8255da7db47a/aih-tih-sc-951f98-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 568/aih-tih-sc-951f98-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/fae8768170bc63c5d17ec0edbf6122/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_2_fastqc.zip 618/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/91e5250d588175730e8530dce27121/aih-tih-sc-560d56-R1_A23WJ53LT4_1.md.bam.metrics 1841/aih-tih-sc-560d56-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/bdf58532fddde459aaf005fb4553e0/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2366/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/11606c0b4de273ae74865accd3fc51/aih-tih-sc-bec563-R1_A23WJ53LT4_1.md.bam.metrics 1875/aih-tih-sc-bec563-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/4cfcb9f542120ee87f345805383b4b/aih-tih-sc-835699-R1_A23WJ53LT4_1.bam_stat.txt 1521/aih-tih-sc-835699-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/b2ee76811447545eadbf1692a16457/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.lc_extrap.txt 2126/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/1d2546c8eea3ca0df18a562751d2f3/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.attempt1.command.log 2109/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/954f410d951fb6334d1d6025433727/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1944/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/4a6ea3cc08b5ac25ac805932543a37/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1590/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/cf8733f94679d31297578df1651e57/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_kallisto_mqc.tsv 381/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/ed952bb25cc1ced148a44e0826abb2/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1981/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/a89d5305624e1b18b4f66d09c4a2a5/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.junction_annotation.log 1214/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/b9bea22a75c51a9d3552f5d90a40a0/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_contamination_mqc.tsv 1751/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/b2dbfef2fc8bb2751b309f7c05e243/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.lc_extrap.txt 2143/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/634be424d910e31b5cd0f516a38eb6/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.Log.final.out 790/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b74a9572a51f13cdd513ecb3ea7d7a/aih-tih-sc-af602e-R1_A23WJ53LT4_1_2_fastqc.zip 706/aih-tih-sc-af602e-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/3379d15dbc21bd932ef2b73e4a6126/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1573/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/f3424d0435ed5a231cdc42dbda7042/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.fastp.html 165/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/d7d87e19912791cc0563f903f78699/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 469/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/7a78650b37766f3541b3e766c42f0b/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2323/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/840dd3816d7c9ac3fe2301c987987c/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_2_fastqc.zip 668/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/f51e0d2a44eab700212988feb6eb50/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.infer_experiment.txt 1021/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/b9a6e1573c45f9bf7ea7944a5d6f83/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_preseq_mqc.tsv 2244/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/86a32cbbd55921edc09b43b2516f09/aih-tih-sc-488877-R1_A23WJ53LT4_1.fastp.html 155/aih-tih-sc-488877-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/3a885341d849626652193efedf35d2/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.inner_distance_freq.txt 1135/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/5ca2c76158066091c7725d11e50f52/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.pos.DupRate.xls 1693/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/da7e7132efd959e69f6a7743d85320/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.Log.final.out 817/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/4c93443d75939149938334fce7b440/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.read_distribution.txt 1277/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/936c75eaaa10b892341e6f862c3d53/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_1_fastqc.zip 657/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/dc3aec2566cd6ee505f0009abe4574/aih-tih-sc-06a169-R1_A23WJ53LT4_1.Log.final.out 802/aih-tih-sc-06a169-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/9e57500576b0da890e381d0f8c4c7f/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_kallisto_mqc.tsv 386/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/7bdb0d25b5744b4590e34c093aa0ce/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.read_distribution.txt 1309/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/6031b59ed8c8ef2d6fbad171632bb0/aih-tih-sc-674b78-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 486/aih-tih-sc-674b78-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/3545c17bc49620e1dd4f067b8baaba/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.attempt1.command.log 2067/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/f24456d948699ee72edcca00ff2142/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 462/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/96bc39dbf32374ca5b4d75502c3718/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.junction_annotation.log 1233/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/0d9c832b3f766578ca632a5571f704/aih-tih-sc-835699-R1_A23WJ53LT4_1_2_fastqc.zip 754/aih-tih-sc-835699-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/91b3caab71db55ea93e269125c639b/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_kallisto_mqc.tsv 300/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/9d1e9337f98cd8de3776e3cadcd78e/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_1_fastqc.zip 751/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/34ad38f126bff1c488107fd46bc1b6/aih-tih-sc-835699-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 950/aih-tih-sc-835699-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/828466151d58873776a418cc70aa31/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.inner_distance_freq.txt 1094/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/2922d9d14233a3cf4512733e85652a/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1960/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/c16383638069722dc0c2ca4a4f12a5/aih-tih-sc-2905df-R1_A23WJ53LT4_1_preseq_mqc.tsv 2275/aih-tih-sc-2905df-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/4284db341cbede36e9091d997f47e9/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1925/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/abe1998fecd1f316250089397ef3e1/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.fastp.json 71/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/3aa399d4e1369fd06c046903fc8867/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_preseq_mqc.tsv 2295/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/b7b3b3c4aaef814d33e66eb8d4ab60/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_preseq_mqc.tsv 2270/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/a9b9fbf5eb542a1f94151ea6b61898/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_contamination_mqc.tsv 1754/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/b61cb9783b04d288979a8eceffb013/aih-tih-sc-2905df-R1_A23WJ53LT4_1.pos.DupRate.xls 1684/aih-tih-sc-2905df-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/c422bf062ef3cea70e9814d4707fee/aih-tih-sc-fee548-R1_A23WJ53LT4_1.read_distribution.txt 1298/aih-tih-sc-fee548-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/ff2bbdf6f17cb214f1b67a0fb5357f/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.pos.DupRate.xls 1675/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/a4e448c0debeb89ef4ceac9b78e056/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.md.bam.metrics 1862/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/dc4efb6e94472a2afd163b7db51205/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.Log.final.out 848/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/6aa18e91b7e3116761610d3c42f010/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_contamination_mqc.tsv 1769/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/4d086478c3c697ea4ba275fea6673f/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_kallisto_mqc.tsv 338/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/8330cd794b8c770fa94d08e9782627/aih-tih-sc-550807-R1_A23WJ53LT4_1.Log.final.out 780/aih-tih-sc-550807-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/7c008f1d8972ebdd980236017c6484/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.read_distribution.txt 1325/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/0240bd2ce85626511d568567f774d9/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 438/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/34fab626b74ec41d63c016717278d6/aih-tih-sc-550807-R1_A23WJ53LT4_1.fastp.json 12/aih-tih-sc-550807-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/5ece9d8c0f1328f50088b654d0af73/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_kallisto_mqc.tsv 306/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/2de860fb00d0d64e7a931399881794/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_kallisto_mqc.tsv 385/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/9871a74f6dc81447caf341b5753b64/aih-tih-sc-669302-R1_A23WJ53LT4_1_kallisto_mqc.tsv 341/aih-tih-sc-669302-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/cbdae8a1831e7f9ecc692c905807d1/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_kallisto_mqc.tsv 368/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/ac2a1edd3e23e256377b8e5f51cfc5/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.log 253/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/fb00e3f9a18b27d6574395197bc7fb/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 419/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/c23e32378e8ce57dac60f4395f642a/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1365/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/2cbc7f4243dcf5e11c2d4f3d8de996/aih-tih-sc-408cca-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2334/aih-tih-sc-408cca-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/c4afc2da95e1b13caa96cc911aeb13/aih-tih-sc-488877-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 555/aih-tih-sc-488877-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/1cb33cb7362f90a06e65a0cfec2b77/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_contamination_mqc.tsv 1759/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/307aaeaea53bc22da13d6839357904/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 503/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/0240bd2ce85626511d568567f774d9/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 437/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/70b127ddcf762deed00f6f86b339d8/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_trimmed_1_fastqc.zip 549/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/e06b58b7fd206894a097acd6799416/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.Log.final.out 807/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/c62c534d846a35a302733da1925501/aih-tih-sc-55b175-R1_A23WJ53LT4_1_preseq_mqc.tsv 2305/aih-tih-sc-55b175-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/ef069cdc28d4c7bbd54f6b1b167ddb/aih-tih-sc-804b22-R1_A23WJ53LT4_1.lc_extrap.txt 2169/aih-tih-sc-804b22-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/e07afa3d31f0daa4cdd9ef1f93525c/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.attempt1.command.log 2051/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/85115225b324ca26dc339614897921/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.md.bam.metrics 1833/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/9f50e225ed47895b1692ca3afd3a32/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2393/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/834ec175cd3181677520823cd07143/aih-tih-sc-ced210-R1_A23WJ53LT4_1.infer_experiment.txt 1044/aih-tih-sc-ced210-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/0e0dc208c9cd969ba15dbdd4b05d52/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.lc_extrap.txt 2191/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/d430abab8ba79e4c3e72f9162bac6d/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_kallisto_mqc.tsv 376/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/72ebb417f67c50038c93331847cc11/aih-tih-sc-bec563-R1_A23WJ53LT4_1.Log.final.out 820/aih-tih-sc-bec563-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/c2fb196991629cf00cfe4b66b8f035/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_preseq_mqc.tsv 2268/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/3198ca5e70e4f0837a3475af9dcc00/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.fastp.html 110/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/437e57106c745b3d98e071f5a94495/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.fastp.html 134/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/4ada2a7c7819c19d56241a3281c7ae/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 894/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/836162a3dcea1c4da479423edb64b5/aih-tih-sc-550807-R1_A23WJ53LT4_1.attempt2.command.log 2046/aih-tih-sc-550807-R1_A23WJ53LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/6031b59ed8c8ef2d6fbad171632bb0/aih-tih-sc-674b78-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 485/aih-tih-sc-674b78-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/a401f46cb1310293b98734d623f53c/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_contamination_mqc.tsv 1793/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/48a1d58f1330a452e441f9e581aa44/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_kallisto_mqc.tsv 369/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/0979f94122b20dd71838b3ff9f2461/aih-tih-sc-fee548-R1_A23WJ53LT4_1.log 254/aih-tih-sc-fee548-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/4c39425906741b1d6fd6e7e53a0678/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.bam_stat.txt 1458/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/a73af6bcdc6194e1443d770e5d775e/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1421/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/c0af8dd5027e6e69beb2b8ae04f292/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1403/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/0f5339fb9641c263068ad1b81c609c/aih-tih-sc-965752-R1_A23WJ53LT4_1_kallisto_mqc.tsv 366/aih-tih-sc-965752-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/a6cf6e461a5618bdcc9b6f0f4ee877/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.md.bam.metrics 1842/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/082dfe1ee92b6c4cd324480b7c94ef/aih-tih-sc-674b78-R1_A23WJ53LT4_1_2_fastqc.zip 688/aih-tih-sc-674b78-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/da10f4ae08f5dabb93e6c7fe5305a0/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_2_fastqc.zip 698/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/ad1b28bc0faedbcb665538e6296287/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.lc_extrap.txt 2167/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/3c8e24151efecab12fa0314e552dc4/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_2_fastqc.zip 584/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/d24386b23299e44c06b7d6cb8857e0/aih-tih-sc-fee548-R1_A23WJ53LT4_1.inner_distance_freq.txt 1110/aih-tih-sc-fee548-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/1c5beb914678166181c40cec4e674e/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.inner_distance_freq.txt 1132/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/0af75db08eb09ed4b8d21aaba2c6f5/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.junction_annotation.log 1157/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/84f0fa997af7197ac53ff949b9a33f/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.lc_extrap.txt 2155/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/d779ab3a9c68052df9eff0fe7e7c59/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.fastp.json 13/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/de72221b2ddcfad1d190c1c06969ce/aih-tih-sc-669302-R1_A23WJ53LT4_1_preseq_mqc.tsv 2293/aih-tih-sc-669302-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/955be5499a85577553e303ce81a417/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2319/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/456b2c25dabbcf3d41b315f98c0b94/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 516/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/e5c99614f5e56c05525ad0fe970cb4/aih-tih-sc-da460d-R1_A23WJ53LT4_1_preseq_mqc.tsv 2262/aih-tih-sc-da460d-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/6b3f027124f6a4ea65c7a9a13997c3/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.fastp.html 164/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/804af9712eaab3a57ba4eabadaec6b/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.infer_experiment.txt 980/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/3f0dadffc1652456b71cf6df307e29/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.attempt1.command.log 2061/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/16d3d690bdd01dc97f2f2042cbcb76/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.lc_extrap.txt 2141/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/69436046e343707412aaa73c957816/aih-tih-sc-64cace-R1_A23WJ53LT4_1.md.bam.metrics 1832/aih-tih-sc-64cace-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/524ab8c1dd1cb5e235e9d8eb6af4bc/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 444/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/08dd2467304c8f60ebbbf6459467b4/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 458/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/f4ed6aaa0dd95aeeab66697379af28/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1371/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/0f54e61d5491360a1ed8da9ec341fd/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_2_fastqc.zip 742/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/e3042272b007656cc4f8be49cfbf7a/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.attempt1.command.log 2104/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/4f87850ea2e4b4413bca9c54bca56a/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.attempt1.command.log 2076/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/3a725511795b47fd50415fbad50f49/aih-tih-sc-ced210-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2001/aih-tih-sc-ced210-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/0e81145747f294d39319e375955a05/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.fastp.json 89/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/b6d814881ca6eef466901c5271c025/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 406/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/58af2a5f5cbec4d3a3a3c49931a0f1/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.lc_extrap.txt 2165/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/4544acf162a29bd8ab1e89c92959a3/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.attempt1.command.log 2062/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/7343db37c3ea660c86db7d0dbe5cee/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1591/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/e9cb920e58f7456bde370aeafa6bfb/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_2_fastqc.zip 644/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/29585687f0a94fc2b6c1998ae4208b/aih-tih-sc-560d56-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 415/aih-tih-sc-560d56-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/209bbe875af53c8f095d3f61ba14cc/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_2_fastqc.zip 624/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/2519e5227cfc9e699ad904c708403b/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1987/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/5b89003418781cd116907b3f0e0fa0/aih-tih-sc-387c73-R1_A23WJ53LT4_1_preseq_mqc.tsv 2285/aih-tih-sc-387c73-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/3a3fc0e6a2cf7292651f4e71131f35/aih-tih-sc-2905df-R1_A23WJ53LT4_1_contamination_mqc.tsv 1781/aih-tih-sc-2905df-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/5c36837c638fc793025d7601003bd6/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Log.final.out 836/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/91e454e2d2ad42f7ab191a3a4816b0/aih-tih-sc-bec563-R1_A23WJ53LT4_1.inner_distance_freq.txt 1104/aih-tih-sc-bec563-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/2862838378b0fca04fbe34565f4e88/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.fastp.json 33/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/2a3fede16b95979df82bbd25e49b14/aih-tih-sc-af602e-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1436/aih-tih-sc-af602e-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/f4eddc7fe7f2f2542480f23c08573f/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.fastp.html 145/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/47682aca1a1d5c539a8b9cd02483e8/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 896/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/9339f25c17d0170b136d8fcb51a533/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.md.bam.metrics 1876/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/2de203a293da2678f5f092445dc2cc/aih-tih-sc-387c73-R1_A23WJ53LT4_1.infer_experiment.txt 1046/aih-tih-sc-387c73-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/e06b58b7fd206894a097acd6799416/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 903/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/6741be33027fe73bccd860396732a1/aih-tih-sc-06a169-R1_A23WJ53LT4_1.lc_extrap.txt 2151/aih-tih-sc-06a169-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/799c4bd5b374e6fb7852230d18ce27/aih-tih-sc-55b175-R1_A23WJ53LT4_1_contamination_mqc.tsv 1826/aih-tih-sc-55b175-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/0dd06141324e89a92e2d07f0b5e8cc/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_contamination_mqc.tsv 1783/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/7f0b12c243fdf8cbd636ce9eb410d9/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.Log.final.out 774/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/4d63f60a5f09aa88939acc9d50694f/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.log 262/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/32127c1edb61730e65a7ee48cacc87/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 513/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/f8dc179c1f36301fe47a6e87f8ff37/aih-tih-sc-804b22-R1_A23WJ53LT4_1.infer_experiment.txt 1016/aih-tih-sc-804b22-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/52af4b24df36bd5a3dc463ccb733de/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_kallisto_mqc.tsv 314/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/431e692d3ce084f8246beeccb1b713/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.bam_stat.txt 1500/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/97fd2a7b4fa7ac902003d0105533e1/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.fastp.json 53/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/70c50fd69ca09124da51e57253fa2c/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.junction_annotation.log 1228/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/7eebf15e84783a33ec9ae9476f9189/aih-tih-sc-408cca-R1_A23WJ53LT4_1.read_distribution.txt 1278/aih-tih-sc-408cca-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/8210b016ca1fe7e4f22fa17d5b2864/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1988/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/9dff13e1bd4bca534c8123d4ab3c39/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.read_distribution.txt 1266/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/1cba8a167d132b89d39f23fa653330/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1432/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/3fd8f6172749d0cc7e6684b421b2c2/aih-tih-sc-284856-R1_A23WJ53LT4_1.pos.DupRate.xls 1639/aih-tih-sc-284856-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/1282a666e46bb5fb603a5d661404ab/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.lc_extrap.txt 2192/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/f4742bc98382870054b708b4ba8968/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2365/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/524ab8c1dd1cb5e235e9d8eb6af4bc/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 443/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/2d4efa443b59f3afe99b0ce340a90d/aih-tih-sc-408cca-R1_A23WJ53LT4_1.Log.final.out 799/aih-tih-sc-408cca-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/b2ee76811447545eadbf1692a16457/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.attempt2.command.log 2030/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/75ecca9da5497c2407f7d93ddf8279/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.read_distribution.txt 1275/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/fc6ba16124f9cb6ab9c482431038b8/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.pos.DupRate.xls 1659/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/0054bef70bb926a152c3ddfb32ed79/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2325/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/652e979b770701bcf5a227c639bc1e/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_1_fastqc.zip 631/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/feab1899ead7478628c4704a5ec7c4/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.attempt2.command.log 2100/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/20053ec572cac53135af5b02d0ca05/aih-tih-sc-387c73-R1_A23WJ53LT4_1.fastp.json 42/aih-tih-sc-387c73-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/2862838378b0fca04fbe34565f4e88/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.fastp.html 129/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/24ea53c3c548b234005c760690e570/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_contamination_mqc.tsv 1753/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/da1630f79f92ba50174402509f7973/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.log 252/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/bbb24c6a17eb9dfe34b3b25637c724/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.inner_distance_freq.txt 1150/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/8448daadd40c3b0120e35584b95066/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.md.bam.metrics 1913/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/e399bf6cb37277e3803a068c0b6c42/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.read_distribution.txt 1279/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/c9f7051498f605196ddc786818de54/aih-tih-sc-669302-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2359/aih-tih-sc-669302-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/bb6862001ea5ea8266e432c4b28ce7/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 959/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/581782ae1a72bd9c994239d2f7e761/aih-tih-sc-06a169-R1_A23WJ53LT4_1.pos.DupRate.xls 1667/aih-tih-sc-06a169-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/3e97889db3bded017a4dfedb2c1067/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.md.bam.metrics 1903/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/aaca908d9b74d5306ec2bd32fef892/aih-tih-sc-331e97-R1_A23WJ53LT4_1.attempt1.command.log 2020/aih-tih-sc-331e97-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/85680dde3947776e4c3a0ff761d74d/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_1_fastqc.zip 709/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/118effa475e0afd55f06b17835c344/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.read_distribution.txt 1260/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/8db8a1a7406dd5502bd120f1b1b16c/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.inner_distance_freq.txt 1136/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/8f090746a9a167996c7f7369ca4b14/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.junction_annotation.log 1230/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/f5b03375c22b8c82a4178cc1a4d788/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 937/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/c4afc2da95e1b13caa96cc911aeb13/aih-tih-sc-488877-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 556/aih-tih-sc-488877-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/4aa3756bf6dfd07d7ddf8e65f11a59/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.log 236/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/83e23ac5c1f7021a7725bd25d45fe5/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_preseq_mqc.tsv 2229/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/cdc9fd6b4e34d31912e91bbf3e4e65/aih-tih-sc-835699-R1_A23WJ53LT4_1.junction_annotation.log 1240/aih-tih-sc-835699-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/4dc35e01d295bb5f6d0cc83c6face4/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_contamination_mqc.tsv 1820/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/4f51c609b6f495e11f734dd8175042/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.lc_extrap.txt 2182/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/c09c2746a81ece39c3e0e564bd8fe6/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.attempt1.command.log 2053/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/88202882f6d011617bed4a0126198c/NTC_0001_0001_A23WJ53LT4_1.ReadsPerGene.out.tab 867/NTC_0001_0001_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/d49c0385c88c1111b3629e276ba995/aih-tih-sc-550807-R1_A23WJ53LT4_1_kallisto_mqc.tsv 303/aih-tih-sc-550807-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/630479e18ee82a0bf0eb09bd623073/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 572/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/e074e1b9989c6361e208908543c27f/aih-tih-sc-408cca-R1_A23WJ53LT4_1_1_fastqc.zip 635/aih-tih-sc-408cca-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/b380c703ffcf6bf198bcb676780df4/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 883/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/d3cf981f19c6d133d5fafd8efedf45/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1992/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/672471047760d1add2694f49efeae1/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.infer_experiment.txt 1032/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/8965c807556936ed02c729633e5014/aih-tih-sc-550807-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2316/aih-tih-sc-550807-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/4c9272ba8e882ea184cc7326ddf957/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.fastp.json 46/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/611fb447c7f802ca7c9681e19d57f2/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.pos.DupRate.xls 1642/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/994a92652218e47811b50f11143d41/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.attempt1.command.log 2092/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/03b0630acd03eac604442996896bf8/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.lc_extrap.txt 2131/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/5d905ff9b92cf5095cb33466134c21/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.infer_experiment.txt 1048/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/e02f1468973a53ad754631c6551573/aih-tih-sc-284856-R1_A23WJ53LT4_1.inner_distance_freq.txt 1063/aih-tih-sc-284856-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/dcd802fd407b93f657d3f0a5737708/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 909/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/59b019237a21ea180321c9ddf0ca96/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.junction_annotation.log 1211/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/4b981c0816f197685078aab1f5c320/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_preseq_mqc.tsv 2224/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/f35df22b52e0170f21c0795b23ab84/aih-tih-sc-55b175-R1_A23WJ53LT4_1.md.bam.metrics 1921/aih-tih-sc-55b175-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/5bc4f9456ed625caf8f447632f219d/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1360/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/550ba49c3daa857106ffb269c574ac/aih-tih-sc-550807-R1_A23WJ53LT4_1.log 207/aih-tih-sc-550807-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/c36a8463dce2c94590d785d3f1eebc/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.junction_annotation.log 1175/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/dcd802fd407b93f657d3f0a5737708/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.Log.final.out 813/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/ef663da1034fec83474c5af551c325/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1404/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/c4a20de5962c481a353726aeef71be/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_2_fastqc.zip 736/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/6db54b82f74a1ea6063d953fafeab8/aih-tih-sc-606237-R1_A23WJ53LT4_1_2_fastqc.zip 730/aih-tih-sc-606237-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/6e5a8385a3efcc9217ae2875938454/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.inner_distance_freq.txt 1109/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/0ff63491ae831449060c4a05998cf7/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2371/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/ad993343d1503e223b1e53e3d01f73/aih-tih-sc-550807-R1_A23WJ53LT4_1_contamination_mqc.tsv 1742/aih-tih-sc-550807-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/72451a451a654db4fc5f8ed77854f5/aih-tih-sc-606237-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1629/aih-tih-sc-606237-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/0b06e47f7201922fdc83c283fed39c/aih-tih-sc-488877-R1_A23WJ53LT4_1.bam_stat.txt 1480/aih-tih-sc-488877-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/f2d0c7bbdb8f385afc9ad766eb916d/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.attempt1.command.log 2037/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/16d3d690bdd01dc97f2f2042cbcb76/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.attempt1.command.log 2045/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/4703daf4982fb2876059018fbca1dc/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2312/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/66c8cbc43b5b297d8d5019b2c4c5ba/aih-tih-sc-387c73-R1_A23WJ53LT4_1.inner_distance_freq.txt 1144/aih-tih-sc-387c73-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/023a4f68a490fe1a4929f9ae01e48a/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.read_distribution.txt 1263/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/c00e19e6d6476e6a3d1b8f049f01c1/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.read_distribution.txt 1315/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/a0bb88de5c7bcd7643b759f15e4ef0/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.read_distribution.txt 1254/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/c2fe0909c138ef192e91c5a702abcf/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.lc_extrap.txt 2174/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/f44f8583c914dc0306315d9d4146c0/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.log 248/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/609ad4b11e8da78034eeba2179758e/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.infer_experiment.txt 973/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/d696d47b108077624bc05e720e40dc/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.lc_extrap.txt 2154/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/b41387fc801f0e343aef4a630440f6/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.infer_experiment.txt 1039/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/c11fb58b08a0dfde7b604bbf36471c/aih-tih-sc-af602e-R1_A23WJ53LT4_1.bam_stat.txt 1536/aih-tih-sc-af602e-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/7639badfb3c054fb0824d5bff8b76e/aih-tih-sc-804b22-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1417/aih-tih-sc-804b22-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/3a1ac00912be73acf6c0a5d96d3885/aih-tih-sc-af602e-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2013/aih-tih-sc-af602e-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/ed761a2a5f93a958a7435b41d77634/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_1_fastqc.zip 707/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/0d7ee4cf82c2695950ec1366afa6f4/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.md.bam.metrics 1865/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/6f78131836dab0a808636a2c67ff39/aih-tih-sc-331e97-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1348/aih-tih-sc-331e97-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/b6d814881ca6eef466901c5271c025/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 405/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/bb997d4c4d3fa419ec00f8ca73d30b/aih-tih-sc-284856-R1_A23WJ53LT4_1_1_fastqc.zip 587/aih-tih-sc-284856-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/464e28e1ed32c836ab0fbb8e406495/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1385/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/7fe16015bc07a1545fab10918307a9/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.fastp.html 181/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/fad43e479b562e2cfc8c61ab286e51/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.junction_annotation.log 1238/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/1f6dc60ab1313bd853053f11f64a8c/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.read_distribution.txt 1314/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/e27997d023b6da40d08c567746d92c/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1410/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/9657344c5f74f549796378429d61cf/aih-tih-sc-af602e-R1_A23WJ53LT4_1_preseq_mqc.tsv 2304/aih-tih-sc-af602e-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/6a87ecaa3edd8805d52eef49aa5d8e/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.md.bam.metrics 1835/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/ad83f99d4249cf1c638ac95525f94d/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.lc_extrap.txt 2129/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/e30e8a8b4c0012cf3de5f1b6665267/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_preseq_mqc.tsv 2228/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/a6ce1ae6356491325e52027156d6f2/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.bam_stat.txt 1532/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/34fab626b74ec41d63c016717278d6/aih-tih-sc-550807-R1_A23WJ53LT4_1.fastp.html 108/aih-tih-sc-550807-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/01b5e0060b0a6b5c320c943a5b276d/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.infer_experiment.txt 997/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/213cff22396f21df625162169007e4/aih-tih-sc-af602e-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1632/aih-tih-sc-af602e-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/472b1d24e171c0a5b74728d970df48/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1958/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/39337784396203295bc445054cac0a/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.fastp.json 75/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/482722f8b87f2f568733d2eabb7eaf/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.attempt1.command.log 2077/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/29585687f0a94fc2b6c1998ae4208b/aih-tih-sc-560d56-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 416/aih-tih-sc-560d56-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/aff12d24fbc42dbc7ced4f13499f8b/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.junction_annotation.log 1229/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/25e9ae044b475aa05c16ec444f8b82/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.fastp.json 43/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/470fd8bacb7e4c30b594caf74c5daf/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 527/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/578d18be7e3531bfa0c67e295dd8d0/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.bam_stat.txt 1520/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/7aa34afe709a63526c2d156dafb7b6/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.pos.DupRate.xls 1638/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/bdff4bb7563ae9961a2c9dbfe7ce88/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_2_fastqc.zip 642/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/349fdf78fd70c0012c264f80d26fc8/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1560/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/7f4af687682cf91a1fbfe92c6ad791/aih-tih-sc-fee548-R1_A23WJ53LT4_1_1_fastqc.zip 673/aih-tih-sc-fee548-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/1594fb0dcccd8d04c5abb5ff2de59c/aih-tih-sc-674b78-R1_A23WJ53LT4_1_preseq_mqc.tsv 2272/aih-tih-sc-674b78-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/86caaea1f7b5ce295a16331c1d10d1/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1353/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/9aad8d8e54b7b05ea659daa741227d/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.fastp.html 112/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/706a81b9621aa9cf6547828561f5f9/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_kallisto_mqc.tsv 315/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/0e98d0c8960901eb2e8255da7db47a/aih-tih-sc-951f98-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 567/aih-tih-sc-951f98-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/cc12709ab04973457df774e0b364e3/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_preseq_mqc.tsv 2221/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/32bbc2915b471c0e89d461a3c3be1a/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1953/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/52e9e456a442485839e428c15a51c8/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_kallisto_mqc.tsv 320/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/85656f667fea716c8a129160c7a78e/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_1_fastqc.zip 653/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/c04851d3dfde754c93fb8d495d017d/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.md.bam.metrics 1916/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/5dab0f97d4317afe3f2ad14263957c/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_1_fastqc.zip 745/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/22651477babce313966489c4b0345b/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.md.bam.metrics 1918/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/2df55c34d109873e1f52346e01a67b/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.fastp.json 31/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/189e501fd023979619fba58588ae9e/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 926/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/9b3735d11e59f78aa60310dd3bb152/aih-tih-sc-387c73-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1433/aih-tih-sc-387c73-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/98d9b44c532d64214bfd6d4c59d566/aih-tih-sc-408cca-R1_A23WJ53LT4_1.pos.DupRate.xls 1662/aih-tih-sc-408cca-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/3ab48ac185e8d55ab28fe09ccab7ba/aih-tih-sc-fee548-R1_A23WJ53LT4_1.Log.final.out 824/aih-tih-sc-fee548-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/b2d481407c813afd8ce4699d478d1d/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.log 267/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/fd626397031b59822edf82bcd752df/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_1_fastqc.zip 731/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/06a18e2891666b64c03aa6c6fd2086/aih-tih-sc-835699-R1_A23WJ53LT4_1_contamination_mqc.tsv 1813/aih-tih-sc-835699-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/939c1d2f43893b60dc7da420988843/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.log 205/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/278cba61eada57df61b07a3dc669f8/aih-tih-sc-560d56-R1_A23WJ53LT4_1.pos.DupRate.xls 1647/aih-tih-sc-560d56-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/83e55c0490b84adeb330354acc054e/aih-tih-sc-835699-R1_A23WJ53LT4_1.fastp.html 175/aih-tih-sc-835699-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/3fc0d6010e94edc8368394788cea8c/aih-tih-sc-387c73-R1_A23WJ53LT4_1.Log.final.out 856/aih-tih-sc-387c73-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/4bb61437b53c183f11da2d3360434a/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_kallisto_mqc.tsv 321/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/7480ddc800bd14bfbefb78f907a2d1/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_1_fastqc.zip 721/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/16663718a034cc883cf76b08adbf4f/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_preseq_mqc.tsv 2214/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/9ac8f90f1c8a92a7c0fcfee2dbee89/aih-tih-sc-560d56-R1_A23WJ53LT4_1_contamination_mqc.tsv 1747/aih-tih-sc-560d56-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/dccb7d3a30d6a6117758ad992ff273/aih-tih-sc-835699-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 544/aih-tih-sc-835699-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/ac254b811cc6a3524e76471377108d/aih-tih-sc-58b830-R1_A23WJ53LT4_1.infer_experiment.txt 988/aih-tih-sc-58b830-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/ee7a51afdc5be15dc5907bb651f9c7/aih-tih-sc-560d56-R1_A23WJ53LT4_1.bam_stat.txt 1454/aih-tih-sc-560d56-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/f0fbe86418624ca85399f2fc379659/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_preseq_mqc.tsv 2277/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/6c443e14b2b42811ae998b938a26af/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_trimmed_2_fastqc.zip 570/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/c45487e47bfeabcfd03de82759b917/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1431/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/ec36dfebda3f6018df76bfad0e5196/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.attempt1.command.log 2021/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/dc41cd80e04b9a693086220327745f/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_preseq_mqc.tsv 2276/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/8bd498a1c7c687f8326ceab86e8eab/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2386/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/456b2c25dabbcf3d41b315f98c0b94/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 515/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/99453d5e66548f371183bfe9317317/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_preseq_mqc.tsv 2263/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/76dc40cdb27b74f29e488cbd221ac3/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1940/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/c82f3abe66dde4df84f5b367dc575a/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.Log.final.out 806/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/c2a86a2ab1de75ac2e2197ef5b3245/aih-tih-sc-669302-R1_A23WJ53LT4_1.md.bam.metrics 1914/aih-tih-sc-669302-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/2f7cdc2488d1c4888c4b934ff6cf0b/aih-tih-sc-669302-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1440/aih-tih-sc-669302-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/8f94b8b7a2e5c15ba6c0069399ed30/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 428/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/e4179eebda6ff14ef9074e108cbd4f/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.bam_stat.txt 1514/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/d646603b3ed26087c71bccbe88e0e8/aih-tih-sc-af602e-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2384/aih-tih-sc-af602e-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/1698d054d04f581f2da01abbf9c74a/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.fastp.json 86/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ed7efe04f9aee9ec34ee573742d23e/aih-tih-sc-af602e-R1_A23WJ53LT4_1.md.bam.metrics 1917/aih-tih-sc-af602e-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6fe78bc8a0763277e9bd3c0f5159ac/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_kallisto_mqc.tsv 356/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/0599de09ea112a8a09e68ce39c6f9e/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.junction_annotation.log 1169/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/49fa4d174cfe28448b7a9be0e2af39/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.infer_experiment.txt 1011/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/a015d4c01e4dcfa3e47ff79f796064/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.fastp.html 193/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/db24a14a02a06c9817cbb4d2a4a85a/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2313/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/774096d5fa23ab7476434b525d0b95/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 558/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/ee5e7a30af69d33fcbebb716766678/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_preseq_mqc.tsv 2243/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/b8192a4ff4d0604a3d3e6fa6a0a443/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.bam_stat.txt 1486/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/7bbd4c9ec728594a9762e0b49a7647/aih-tih-sc-804b22-R1_A23WJ53LT4_1.pos.DupRate.xls 1681/aih-tih-sc-804b22-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/65382dedef81bcb08024d72844403d/aih-tih-sc-58b830-R1_A23WJ53LT4_1.md.bam.metrics 1852/aih-tih-sc-58b830-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/2c2d616ba957fefd7ed956898f68e5/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_contamination_mqc.tsv 1792/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/8726d273c6bcbeed6341539772a249/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2383/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/797f7c2df5aa743ca513bf67f383e5/aih-tih-sc-965752-R1_A23WJ53LT4_1_2_fastqc.zip 718/aih-tih-sc-965752-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/eadfe2d41f21d8472ab2355fe8550c/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.read_distribution.txt 1285/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/be80240eaae3653a90c01cd895a5e4/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_2_fastqc.zip 714/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/744b3d1cfa69dbdce5d948443c60c6/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_kallisto_mqc.tsv 383/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/3074a9fae909333a9b09c11cc59b36/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_1_fastqc.zip 585/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/8bbaa700b0e39378ec427af13ea525/aih-tih-sc-284856-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2308/aih-tih-sc-284856-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/2e3a5f4e71e7d382d6300a13f27c4e/aih-tih-sc-bec563-R1_A23WJ53LT4_1.attempt1.command.log 2074/aih-tih-sc-bec563-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/d3bd5d65d6c6a92d2f6f08157769c9/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_kallisto_mqc.tsv 329/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/25e9782749eb42b5292a4c38619645/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.infer_experiment.txt 1001/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/f4ecacafc7f94ce287dd3a60972f9a/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.fastp.html 172/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/1cc93302c1a8c39ace7c6ac9140218/aih-tih-sc-560d56-R1_A23WJ53LT4_1_2_fastqc.zip 608/aih-tih-sc-560d56-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/8452e5264fa46d4cb7b7df30e2b7a7/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2333/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/d52cc333143df4c007a2e5abf3ab77/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_annotation.log 1195/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/8ffb118e9a5abd1cb008ea813c51b9/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1553/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/71126d53cf0b5f69a041aca94120be/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1595/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/0c313260d0426319751e8beeac5910/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.bam_stat.txt 1494/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/ac0898760b67c743e4771421e46995/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 869/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/0cef21b8ef97083e62a8a0025b114b/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.read_distribution.txt 1332/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/45c1da70d0ba9181d4644ae5611f05/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.attempt1.command.log 2103/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/dcaf2adc579d7e98f68d235dd38c3f/aih-tih-sc-58b830-R1_A23WJ53LT4_1_preseq_mqc.tsv 2231/aih-tih-sc-58b830-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/26d9b53549f1f8f2ba0542fec6111f/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_1_fastqc.zip 593/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/811a69d7df314615baa1a2c258f301/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.infer_experiment.txt 1031/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/a557d144db87db9167e4772a4eb293/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.junction_annotation.log 1219/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/8c8ee90268af3e7e8c05b6938cbf8b/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_2_fastqc.zip 740/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/8d69b52bd6c4d15c8a4d2ba2963114/aih-tih-sc-fee548-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 502/aih-tih-sc-fee548-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/52545c2dbf2c5bcf7d88100554e5c6/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 536/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/a1b4a25f01b690352400842b42a7b1/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 478/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/c66c7562003d4888b4acb4c04d2e43/aih-tih-sc-bec563-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1397/aih-tih-sc-bec563-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/33048e76bf09aabbb4f951712a7d18/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 480/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/e3d319e208e1ff26984eb33adb5349/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.lc_extrap.txt 2123/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/1f2ad0997fbe58e8dee1187b8741b6/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2339/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/3a862fd2e3b873f54dcbcba7ce17c1/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2387/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/d33575db21deb95009f2582dabc6c4/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.fastp.json 30/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/da3bf6c355c2d71632a2a6491de4bf/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.md.bam.metrics 1898/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/76b4684ac530280e26cb4a7fdb6b86/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.lc_extrap.txt 2175/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/9c53ec77fece68f836f0dda3103cb4/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.fastp.json 37/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/da7e7132efd959e69f6a7743d85320/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 913/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/416220f9e8000ef58c8dcb2e073bf2/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 460/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/d37a060bc83cb55596ff167fbf65f5/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.junction_annotation.log 1244/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/452a1f75723f5cc5a3793f1ef52bbc/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.read_distribution.txt 1295/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/2a82d0e10b03dc912df8e6550ea886/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2007/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/17268750401d205b03e9f719ad3cc9/aih-tih-sc-64cace-R1_A23WJ53LT4_1_2_fastqc.zip 590/aih-tih-sc-64cace-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/14fad59397f9494a33e74540dc9f5f/aih-tih-sc-55b175-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1633/aih-tih-sc-55b175-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/431d7096b306a594aeeb2b33c7c2b7/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.md.bam.metrics 1866/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/f0171e27852692a57108c36acc6c54/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.read_distribution.txt 1338/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/a42e2bd0043ef605ee8fbda2f133ac/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_2_fastqc.zip 700/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/6ed4efcc46d4582647023f02415785/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.fastp.html 135/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/a9b77c2df81bd4d81ce773031ed290/aih-tih-sc-488877-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 911/aih-tih-sc-488877-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/a7b691bc01bc0edbc49507c67d7c74/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_1_fastqc.zip 591/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/f37e438d4cdeb905a60c1fa5bbb433/aih-tih-sc-ced210-R1_A23WJ53LT4_1.fastp.html 190/aih-tih-sc-ced210-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/494e877ac795e9a22098abaae777f4/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.inner_distance_freq.txt 1062/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/9d54d221b3d91688e488a7e1f33f3d/aih-tih-sc-606237-R1_A23WJ53LT4_1.pos.DupRate.xls 1718/aih-tih-sc-606237-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/5ee6d1ad2412e1cda556f2e4ee3b37/aih-tih-sc-408cca-R1_A23WJ53LT4_1_preseq_mqc.tsv 2240/aih-tih-sc-408cca-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/8ba4c3efc828c390b45fc579e40743/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_contamination_mqc.tsv 1806/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/54b383ce8e19ea0dfec78c1987e76a/aih-tih-sc-488877-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1968/aih-tih-sc-488877-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/d4f51e4e926b21f6a4a004a7df67e0/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fastp.json 74/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/32b5944e20cd5bd0356d1dd200d1ff/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.bam_stat.txt 1450/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/4fbfc9318dc64d991febdc4a4341f7/aih-tih-sc-fee548-R1_A23WJ53LT4_1.pos.DupRate.xls 1683/aih-tih-sc-fee548-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/7ced38e3d3c7fd10bc38c83a3d049f/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_1_fastqc.zip 703/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/999c1d15a129d037955506d96b4700/aih-tih-sc-2905df-R1_A23WJ53LT4_1.attempt1.command.log 2083/aih-tih-sc-2905df-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/7fc27e1ff365a104e21d30fe92a420/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.inner_distance_freq.txt 1130/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/b75a23a1abb3ed2c8ab0ed33173081/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_1_fastqc.zip 747/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/f580f56c4c0be749f7d3cb4ce0dcdd/aih-tih-sc-58b830-R1_A23WJ53LT4_1.junction_annotation.log 1178/aih-tih-sc-58b830-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/a3d0abb6d858cce3ff4af100fddea5/aih-tih-sc-284856-R1_A23WJ53LT4_1_kallisto_mqc.tsv 295/aih-tih-sc-284856-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/e968395e341dcbd282a6b34a3213b9/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1420/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/d7c614dd2d4101e57dd2d00e4cb10e/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.fastp.html 150/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/3a0ff67a1f5a6a3bea0a66ad2cd32b/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.Log.final.out 778/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/8f94b8b7a2e5c15ba6c0069399ed30/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 427/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/4e8d8a13e2806ec591c51bcd27f29b/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.junction_annotation.log 1198/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/6bac7a8a4b09d0437e4f94372b89a8/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.bam_stat.txt 1455/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/c10897376ff6bf46788a9e645e14e1/aih-tih-sc-560d56-R1_A23WJ53LT4_1.inner_distance_freq.txt 1072/aih-tih-sc-560d56-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/a1865300c5f36439c64be0af8d3ece/aih-tih-sc-2905df-R1_A23WJ53LT4_1_2_fastqc.zip 686/aih-tih-sc-2905df-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/4a9d20e6256845426b792646e823ab/aih-tih-sc-408cca-R1_A23WJ53LT4_1.md.bam.metrics 1855/aih-tih-sc-408cca-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/d65c19e737e32424f71bf992f6da9f/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_contamination_mqc.tsv 1748/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/9e69d7064fdd6f92137641a7aadc9b/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.attempt1.command.log 2036/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/84cf3ae0f0ec3841d5ad79423a41e0/aih-tih-sc-fee548-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1400/aih-tih-sc-fee548-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/a0dd166dc22baa7aebfe2baeec7e84/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 934/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/62296fbe63fe24fa113a08b9047913/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.bam_stat.txt 1515/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/147862ecb2fef4aa1bad4f979bb3fa/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_contamination_mqc.tsv 1749/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/b00de609ee24ce1aa912bdce175105/aih-tih-sc-bec563-R1_A23WJ53LT4_1_kallisto_mqc.tsv 374/aih-tih-sc-bec563-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/ec6d28b3890957e690556aa539279b/aih-tih-sc-550807-R1_A23WJ53LT4_1.read_distribution.txt 1265/aih-tih-sc-550807-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/3a3d40a63297c317089951a9eb8565/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.infer_experiment.txt 992/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/5527388f69cf009d4b49b29fb6ba40/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_preseq_mqc.tsv 2216/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/85680dde3947776e4c3a0ff761d74d/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_2_fastqc.zip 710/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/e5b21a0057ade8b0f73913b98a8b29/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.read_distribution.txt 1261/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/4698ad6e59e3cac222c6d1bf12390a/aih-tih-sc-965752-R1_A23WJ53LT4_1.bam_stat.txt 1487/aih-tih-sc-965752-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/8324868167d480a5e106502f171c90/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.md.bam.metrics 1908/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/5bfcf8a611ee53cdb4af14e6d54941/aih-tih-sc-2905df-R1_A23WJ53LT4_1.infer_experiment.txt 1008/aih-tih-sc-2905df-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/d7e75156764a634913e1f2b9d2c78b/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_contamination_mqc.tsv 1777/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/0b5d160a8d001af5b0756162d4942a/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.inner_distance_freq.txt 1074/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/bb6862001ea5ea8266e432c4b28ce7/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.Log.final.out 863/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/470fd8bacb7e4c30b594caf74c5daf/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 528/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/71cfea8ab56d472923993afd19ad13/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1615/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/4583009db9deb7403f4bbc5b247aed/aih-tih-sc-669302-R1_A23WJ53LT4_1.fastp.html 160/aih-tih-sc-669302-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/04e804ac7e389ebdb36c3256952ced/aih-tih-sc-284856-R1_A23WJ53LT4_1.bam_stat.txt 1447/aih-tih-sc-284856-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/2fb4585c1bb93f57951dc709fd7c8e/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_1_fastqc.zip 665/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/ce67f3e179c3f0de64656c52c0ce83/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 900/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/e1a5abd42a6d2e608185c37996a3b3/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_1_fastqc.zip 675/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/bc3a232737b9a17e6b9d3033c50af5/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 891/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/2406f14bac3cd1040956325fee31da/aih-tih-sc-408cca-R1_A23WJ53LT4_1.lc_extrap.txt 2144/aih-tih-sc-408cca-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/76b483d31270bc6f8b5d15e1846f31/.command.run .command.run")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/2fcc4411c5d156478bac19fb94e140/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1628/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/66f99fe47335a4786a254ba5de1183/aih-tih-sc-55b175-R1_A23WJ53LT4_1.Log.final.out 866/aih-tih-sc-55b175-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/84508860ad6918a3e43bdb6fcf4e88/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.lc_extrap.txt 2134/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/d21ec25ed0003e7f062f23691d821b/aih-tih-sc-674b78-R1_A23WJ53LT4_1.pos.DupRate.xls 1688/aih-tih-sc-674b78-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/6730f812fcc1f8e8a965e38b9d8162/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_contamination_mqc.tsv 1804/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/7eb74fbe3955cd142893140689ff55/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.log 237/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/9cee8c69e960107b8965723296837b/aih-tih-sc-965752-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 548/aih-tih-sc-965752-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/6c920670b85ff97dff83870bceddf4/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1985/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/b922311dbfbe7f14efbec8d0c67585/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2379/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/6070c06a01ed66a32446a78f0d3eb9/aih-tih-sc-669302-R1_A23WJ53LT4_1.inner_distance_freq.txt 1147/aih-tih-sc-669302-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/6b33cb06c08ef161381412d92b72bf/aih-tih-sc-560d56-R1_A23WJ53LT4_1.fastp.html 116/aih-tih-sc-560d56-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/bb54b53bebefb8e2e6f17d5094e560/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.log 285/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/77de58c8e8cc4f17dfbf37cd6b6584/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.inner_distance_freq.txt 1105/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/cb698e67e909979859d18f7c36121d/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2397/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/351e4bcbaf42618ababc5f4013e677/aih-tih-sc-669302-R1_A23WJ53LT4_1.read_distribution.txt 1343/aih-tih-sc-669302-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/9104346342902bc9ca7707c1a0da49/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.pos.DupRate.xls 1682/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/0c0ed6ffe3d9c133a43a411c4b91a3/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1594/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/ab1ecef568cb5d38abb03fb63db551/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 906/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/5ce590c038f6373464df8606daebf7/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.junction_annotation.log 1208/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/6cf31ebf26c5cf804b1dafa9d98cc0/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1398/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/9c55b13dda392cb89a63548d69dbd4/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.bam_stat.txt 1511/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/795059fab52cb19364c035fbf6e0f4/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.fastp.json 10/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/c092d3601b783b981d9044d5a14821/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.fastp.html 125/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/ef4fdcc9db4527cd6adb462badfb2a/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1585/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/f244335e013613f8be7f4721f31a5a/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_kallisto_mqc.tsv 310/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/2d2f968522a9b30365d531d0789129/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.fastp.html 118/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/5f13583f2c39266d5f3126fc8e3caa/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.Log.final.out 783/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/e3da4890c7e6231955d0cd18efa7cd/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_contamination_mqc.tsv 1764/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/6db54b82f74a1ea6063d953fafeab8/aih-tih-sc-606237-R1_A23WJ53LT4_1_1_fastqc.zip 729/aih-tih-sc-606237-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/ca3c263b269889b281d7850ed91b2b/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.fastp.json 52/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/03fbe6e345a814feccb132ae7bdefb/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.junction_annotation.log 1210/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/5e722b591545f3665a8911e11c952a/aih-tih-sc-550807-R1_A23WJ53LT4_1.md.bam.metrics 1837/aih-tih-sc-550807-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/4944fba7ee8e3c60d1a80fdb726abd/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2373/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/cd452784d5e197f8397b3e297ea067/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.pos.DupRate.xls 1719/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/63cad990f9807c54ff2f0c1a8e46e9/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.md.bam.metrics 1879/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/e92ebbef9fa26f44b1d81209db6391/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 887/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/37fff7c308fc50a0b122c9e53e19af/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.fastp.json 65/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/6d1899f6f477ac1d841de01ae8aed7/aih-tih-sc-674b78-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2005/aih-tih-sc-674b78-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/7505eebb7dc39b9ee0fd76e86224de/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.fastp.json 19/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/76dc51917ed1044a20a20c747e6f38/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.lc_extrap.txt 2168/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/a9a981aab05800b6fd70951e752aae/aih-tih-sc-fee548-R1_A23WJ53LT4_1.lc_extrap.txt 2164/aih-tih-sc-fee548-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/76dd58adb5b765c5d1fbfd0efd4d47/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.pos.DupRate.xls 1669/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/1e46e78b5e2b0541daa3c9b9a7d01a/aih-tih-sc-951f98-R1_A23WJ53LT4_1.attempt1.command.log 2094/aih-tih-sc-951f98-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/448e4ef190e9780caa77e631bfe212/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_contamination_mqc.tsv 1766/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/e1fa5f8d4855c3aff5f3b3c4ee2794/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.attempt1.command.log 2108/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/05d385d8a4c1773b32c54027fe5a96/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1956/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/a46360c1b3303e4567159bdbab6f47/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_1_fastqc.zip 637/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/52545c2dbf2c5bcf7d88100554e5c6/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 535/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/369ff23d176a9a402b202ab794d522/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_kallisto_mqc.tsv 373/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/2934bd7bfe2f0b821af1581e23c097/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1367/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/c3df38a045023ee11f5402e5045738/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 499/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/7a0f9a754376099ebe834485a937e6/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.pos.DupRate.xls 1728/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/584b765cd5497ffe56c28f7f32929e/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.junction_annotation.log 1241/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/a99af81ccded7a388886475099008e/aih-tih-sc-7de750-R1_A23WJ53LT4_1.bam_stat.txt 1510/aih-tih-sc-7de750-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/f245f2e526b4c0ad8e649511afe653/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1378/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/370c0a4696aa0e5403ca2a286da4d2/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.inner_distance_freq.txt 1117/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/aee8405a183834dca6dab8ed1494fa/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.attempt1.command.log 2110/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/470fb68317091762bcf513507aa530/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1945/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/17cdc537078e393a5d44ff142af734/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.infer_experiment.txt 1053/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/1d2546c8eea3ca0df18a562751d2f3/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.lc_extrap.txt 2205/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/a55316d994447cd5ff201b78b08f3a/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.log 212/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/696daa2096185a150160dea66c1cac/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_contamination_mqc.tsv 1741/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/4eeb984027cfa74fe5ef09ade0ee21/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.read_distribution.txt 1327/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/28bd54195736fbd5d226be88a15056/aih-tih-sc-550807-R1_A23WJ53LT4_1_preseq_mqc.tsv 2238/aih-tih-sc-550807-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/a5baf3e8520554ba40fe3fcfbe0328/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 907/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/dccb7d3a30d6a6117758ad992ff273/aih-tih-sc-835699-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 543/aih-tih-sc-835699-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/e6684f9752ecb48fe53b896bb7939f/aih-tih-sc-408cca-R1_A23WJ53LT4_1.fastp.json 36/aih-tih-sc-408cca-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/54bfcaba2b2b0ff02b6eb5a12e2281/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.inner_distance_freq.txt 1096/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/5c07f6a0c01422461cefa6173d3a5f/aih-tih-sc-669302-R1_A23WJ53LT4_1_1_fastqc.zip 769/aih-tih-sc-669302-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/9919692e6f7edcf26c7109e63bbadb/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.inner_distance_freq.txt 1078/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/a77fe5f7f855b3736da5d161dc996f/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.fastp.json 70/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/17d162d0481e17abd0ae862ae3b8b8/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_kallisto_mqc.tsv 317/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/dc0624fb0ae038a16996978164ebdf/aih-tih-sc-951f98-R1_A23WJ53LT4_1_2_fastqc.zip 768/aih-tih-sc-951f98-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/651993c7ca11d3349b48cad1693d4c/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2318/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/35560ceec4cba54fcea7fcaba1a982/NTC_0001_0001_A23WJ53LT4_1.pos.DupRate.xls 1635/NTC_0001_0001_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/631d213215caffdc849bd503d9c510/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.infer_experiment.txt 1030/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/8faf7733d6d6eccf5d012fe98500a9/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1382/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/c09c2746a81ece39c3e0e564bd8fe6/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.lc_extrap.txt 2149/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/597e421ba282deecaccd0337489f59/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1415/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/b497bf033ac87f2cbc2f87c6885fc4/aih-tih-sc-951f98-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1630/aih-tih-sc-951f98-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/11417ac88cafaee06f0086961ea997/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.junction_annotation.log 1167/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/5ff09b0fdb3287824739f92a16cdf5/NTC_0001_0001_A23WJ53LT4_1_kallisto_mqc.tsv 293/NTC_0001_0001_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/d1cd4b0d7d584e85e4f20ff35c3002/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_preseq_mqc.tsv 2251/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/999f85dff25ebd0614e724682f8ce8/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_preseq_mqc.tsv 2226/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/426cdcbe45622cc539eaf6fc31006e/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_kallisto_mqc.tsv 382/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/18f5b78809cabac5b6055d2c9d1bef/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2004/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/e8ba10f03fb18ebb7f6b9ad97a6312/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.read_distribution.txt 1329/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/d75b40dba5213b12f6abf1fb302e38/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_kallisto_mqc.tsv 335/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/d2a9a39f430c916542bf9f3471bf78/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.md.bam.metrics 1845/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/6625f126f3150c3f94dfb78c1fff00/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2367/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/cea3090182e9dd85c3dc4b75944b45/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.pos.DupRate.xls 1724/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/3dafa7f634f2547e0a99608b6b1096/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.bam_stat.txt 1445/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/c8590f94f58d2b099e8ed73390973f/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 930/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/8d69b52bd6c4d15c8a4d2ba2963114/aih-tih-sc-fee548-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 501/aih-tih-sc-fee548-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/74a976e6a81e212dbfd37781ff36a5/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 424/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/440bb10c8fe7275367927fb9379a72/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.infer_experiment.txt 981/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/ad83f99d4249cf1c638ac95525f94d/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.attempt1.command.log 2033/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/c2fe0909c138ef192e91c5a702abcf/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.attempt1.command.log 2078/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/85dd8204bf330c8fb91438a7cb3a23/NTC_0001_0001_A23WJ53LT4_1_trimmed_1_fastqc.zip 387/NTC_0001_0001_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/d64a5750216ca2a3542d2a31409001/aih-tih-sc-835699-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2000/aih-tih-sc-835699-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/76dc51917ed1044a20a20c747e6f38/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.attempt1.command.log 2072/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/c5c6ec3b4ced32b6e2232ad2d8c614/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.Log.final.out 788/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/ad2f1a4e60c9781257f7b7dee05083/aih-tih-sc-64cace-R1_A23WJ53LT4_1.Log.final.out 776/aih-tih-sc-64cace-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/efd60422305e56299de7ae97660b9f/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_seqtool_mqc.tsv 1999/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/009751687bc4c4654e543f1228965c/aih-tih-sc-7de750-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2350/aih-tih-sc-7de750-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/4c6992c980bf2d6a560988755298a1/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_contamination_mqc.tsv 1737/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/f33936f1bcca77b1ee3bcaa6450c45/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_2_fastqc.zip 662/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/fadb7d9f9f7a1a2279e4b732a6186f/aih-tih-sc-284856-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 871/aih-tih-sc-284856-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/10ad51aea8ea2bf814f1a08c113332/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.infer_experiment.txt 983/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/740a3ecf87a2a9319775953efc30e9/aih-tih-sc-835699-R1_A23WJ53LT4_1.infer_experiment.txt 1042/aih-tih-sc-835699-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/d8dc1cfa850b6eb8ed7752ae3326f5/aih-tih-sc-550807-R1_A23WJ53LT4_1_2_fastqc.zip 614/aih-tih-sc-550807-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/96445dc3cb758e9044f785487907c9/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.md.bam.metrics 1864/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/b502dfbefb7af7ebe08102f6b65017/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1994/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/b8369089b7b5069512585332d80c9e/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.Log.final.out 843/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/c29b587ea1062d4179261033591bb0/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.fastp.json 87/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/6936419f289b454d82c2c468d29444/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.infer_experiment.txt 1026/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/0f3e685c770ef28909337356646832/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.fastp.json 61/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/cdcc4c79cdc80625e12aac36ea115f/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.infer_experiment.txt 1017/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/63131650c118f07f129b3518b1d5c0/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.read_distribution.txt 1305/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/3ad82e18bd2103fd26fba3b76e8888/aih-tih-sc-55b175-R1_A23WJ53LT4_1_1_fastqc.zip 723/aih-tih-sc-55b175-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/921657418d20076767edf4a6c9cbf6/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.junction_annotation.log 1166/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/ac26e1ced50de13e225f8ae0f9a216/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.junction_annotation.log 1196/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/488845d2b10f8f4a388f9903288a51/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.log 206/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/55aefe334b5038142868eb260a5c34/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.md.bam.metrics 1915/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/0237f81117de3df422be5a0ccdda97/aih-tih-sc-669302-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2010/aih-tih-sc-669302-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/7f29d4ba8bfb05966a3dd6e5f9a998/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.junction_annotation.log 1205/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/957e12b94f1fdc922ff32c19b15e21/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1611/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/774096d5fa23ab7476434b525d0b95/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 557/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/b65930246e3b971663e9776e3ea042/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_preseq_mqc.tsv 2220/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/a1bf122890230b7cf364c798a6d611/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.bam_stat.txt 1453/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/cafb2f2c68be176eb38e2088fcab17/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.fastp.json 98/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/99c501bcabb1ee5eb98240045db04b/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.log 214/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/12ec5b49feaae346af532a706684ea/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.junction_annotation.log 1183/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/c69382868a8c03ed313ec82d552d74/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_preseq_mqc.tsv 2264/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/42f03ee3ef533b0c3e4f3ffb3d2206/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.bam_stat.txt 1459/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/cb143cc9604395078367d37d3de4f3/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.fastp.html 137/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/5e9ac8d7db7b59bdb9142bc84b6464/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_2_fastqc.zip 716/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/4f97c5f85a4399f46ba693d26b9755/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_preseq_mqc.tsv 2296/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/eb9d3bc3af91fac55568579184d734/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_1_fastqc.zip 615/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/ce67f3e179c3f0de64656c52c0ce83/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.Log.final.out 804/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/828d1af66d1ff3c2dcdc00745c1684/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2309/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/dfbd0cdb85f49cfdc11d12ca1b6bb3/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2310/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/21f8bbaf9d3640a4cf1e25650ed9f5/aih-tih-sc-bec563-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 530/aih-tih-sc-bec563-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/9693cd587469e3724da20fe42aea01/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_2_fastqc.zip 612/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/e43cb4791398dfc7ea164794620c82/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.read_distribution.txt 1272/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/ba844d465b3c58c9b857ed43221c4a/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2356/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/b9b0de9220ef8c921b9b237a2b4dd3/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.md.bam.metrics 1861/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/3aead223bad4b0580015100576de61/aih-tih-sc-06a169-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 455/aih-tih-sc-06a169-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/9782afd8b3d1d477d7a79685ef581f/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_preseq_mqc.tsv 2255/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/a8003a48e9154766d573a25cae4276/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.md.bam.metrics 1850/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/d40be2c87f85fef3b0bfd507170831/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.log 258/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/c8590f94f58d2b099e8ed73390973f/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.Log.final.out 834/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/bcd51f6a47ff3ba5f654d5eeb3a1fd/aih-tih-sc-da460d-R1_A23WJ53LT4_1.pos.DupRate.xls 1710/aih-tih-sc-da460d-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/7fbfff00f44768b2551e672fd0e1f5/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.inner_distance_freq.txt 1131/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/8889626bc0476ffaaa3c447fac18ff/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.read_distribution.txt 1276/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/e108bbcf12bbb4420e454e1f3c3c2d/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.fastp.html 144/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/8d85bf5a616c69f14f6785052cec94/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1964/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/96c2b7a07c8ee91e9ba7bf678b662c/aih-tih-sc-669302-R1_A23WJ53LT4_1_contamination_mqc.tsv 1818/aih-tih-sc-669302-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/8455bab5b4ca627776fcc7f36c637e/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.fastp.json 58/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/0eb848b7431f9dae391a59f76ec9d6/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.infer_experiment.txt 1038/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/7c6e86f867b7acd3be6c5b238644f9/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.infer_experiment.txt 984/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/f24456d948699ee72edcca00ff2142/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 461/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/0e1675fbe29487400729342645c414/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 927/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/7bc2fe7376ea6e5ee87bfa3aacb149/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_seqtool_mqc.tsv 2009/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/72e6c42753d764ab3b60a7182b4ada/aih-tih-sc-560d56-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1550/aih-tih-sc-560d56-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/b677e7307db94bbb34fdc7fef2e785/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.log 242/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/1a2d0ef63cff2681f86ffcdfd1d10f/aih-tih-sc-965752-R1_A23WJ53LT4_1.lc_extrap.txt 2162/aih-tih-sc-965752-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/058425778a6fbd306c05f5516c767c/aih-tih-sc-387c73-R1_A23WJ53LT4_1_1_fastqc.zip 677/aih-tih-sc-387c73-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/1bd6c9c4b2a4992ccc5290b637c64f/aih-tih-sc-951f98-R1_A23WJ53LT4_1_kallisto_mqc.tsv 361/aih-tih-sc-951f98-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/08dd2467304c8f60ebbbf6459467b4/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 457/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/2c973cfa528629a0f1b05245fc98d6/aih-tih-sc-da460d-R1_A23WJ53LT4_1.attempt1.command.log 2070/aih-tih-sc-da460d-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/9cee8c69e960107b8965723296837b/aih-tih-sc-965752-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 547/aih-tih-sc-965752-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/19f4a2f3755fbe6f2e17d5d2367ca9/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_2_fastqc.zip 702/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/e7d8e06a28ad4e1644802e2f34cc19/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.md.bam.metrics 1888/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/5ec3bf0c7ddebbc5b813d84440b3a0/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.log 231/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/ee90272e9cbb3c0706cc20554d36c9/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.Log.final.out 862/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/02f0ffd4bf746b6d44cfa06a77372a/aih-tih-sc-64cace-R1_A23WJ53LT4_1.lc_extrap.txt 2121/aih-tih-sc-64cace-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/ec697ddee1b31846734bda5df4d58c/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.fastp.json 17/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/2497075a8f752b7036c4ca8d8de4cb/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.md.bam.metrics 1889/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/4068685e8f90629c19907235a91b39/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.fastp.json 78/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/deacfed1d0b73c959ef77e1abaefe7/aih-tih-sc-408cca-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 449/aih-tih-sc-408cca-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/9b20ae1328ec0cb4ffe12cd470c912/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.fastp.json 83/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/b76dcbfd522ba735683a8d2be378ca/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.log 280/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/d26f51fd1387bcea5f824e8b8c20e0/aih-tih-sc-af602e-R1_A23WJ53LT4_1.lc_extrap.txt 2208/aih-tih-sc-af602e-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/573185c788622aff17af1bafd10d92/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1557/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a51058b484e172ca50bc9718bf88db/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.log 230/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/f99e8b13cdfd34ae4c357234ba57ce/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_contamination_mqc.tsv 1802/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/629cfef7121a84be7afa5bd721afda/aih-tih-sc-06a169-R1_A23WJ53LT4_1.junction_annotation.log 1185/aih-tih-sc-06a169-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/62a6a50469ee4ae31a597d2147c605/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.attempt1.command.log 2106/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/519700e432348225ec31e5032edd66/aih-tih-sc-387c73-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2390/aih-tih-sc-387c73-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/51a679fc14f5c162f35cd9eb3398ce/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.junction_annotation.log 1209/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/fe9294df9e5c8cec9bab10e719b600/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1616/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/4f104bca7669b51396ad4b493c9859/aih-tih-sc-58b830-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 435/aih-tih-sc-58b830-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/284db8f651694fc172d9702b315ffd/aih-tih-sc-804b22-R1_A23WJ53LT4_1.log 238/aih-tih-sc-804b22-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/c225f731d32ecbf4db560283d36ace/aih-tih-sc-2905df-R1_A23WJ53LT4_1.read_distribution.txt 1296/aih-tih-sc-2905df-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/c605f3347b6348a01cff4ea29c798f/aih-tih-sc-284856-R1_A23WJ53LT4_1_contamination_mqc.tsv 1735/aih-tih-sc-284856-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/6923d585bf4d3796dff20013075284/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_kallisto_mqc.tsv 349/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/dc1f2f691444e69868668444b1f69f/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.read_distribution.txt 1328/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/7c6db892ec42fb8028319556890536/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_kallisto_mqc.tsv 352/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/e0a95a8f26340032cc41fd9ebe67d0/aih-tih-sc-606237-R1_A23WJ53LT4_1.Log.final.out 840/aih-tih-sc-606237-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/87f15108e9db5b9cca62960f72a1c3/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_contamination_mqc.tsv 1798/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/c4c56e27d893316521962c041cdcfb/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.lc_extrap.txt 2194/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/68f637663d2fbe122a24bfd884d91e/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.md.bam.metrics 1886/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/58f68ec925a7f3f06e26645056b282/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.attempt1.command.log 2024/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/a0dd166dc22baa7aebfe2baeec7e84/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Log.final.out 838/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/b23bde93329de6b5ad1b6d92e1878b/aih-tih-sc-606237-R1_A23WJ53LT4_1.infer_experiment.txt 1049/aih-tih-sc-606237-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/52539c8aed8eb6218195481f75b94c/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 440/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/ec36dfebda3f6018df76bfad0e5196/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.lc_extrap.txt 2117/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/ca8735f1209858865240648cd4b538/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_preseq_mqc.tsv 2291/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/7747672e215b7907a88a16b9aed1e7/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.log 208/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/4912bdb58ae35781f371aa270506af/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.pos.DupRate.xls 1716/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/fc1f99bc07fd425eb7666626bf1ef5/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.log 220/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/b75a23a1abb3ed2c8ab0ed33173081/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_2_fastqc.zip 748/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/cf330995533059f2b6c260860f5e7f/aih-tih-sc-804b22-R1_A23WJ53LT4_1.md.bam.metrics 1881/aih-tih-sc-804b22-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/f7abce37557d45e14de352e54fb62b/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.inner_distance_freq.txt 1118/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/6150e9c016537606b3a4800ed11672/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.junction_annotation.log 1174/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/5138825491b00634cbd1f002f858c8/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.md.bam.metrics 1844/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/f41766b22a165d87b0e1e85409f727/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.lc_extrap.txt 2128/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/fd626397031b59822edf82bcd752df/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_2_fastqc.zip 732/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/8e70a75025108a0aab670ecf182058/aih-tih-sc-64cace-R1_A23WJ53LT4_1.inner_distance_freq.txt 1064/aih-tih-sc-64cace-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/ed761a2a5f93a958a7435b41d77634/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_2_fastqc.zip 708/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/2e2559b7b0479f5589fa9b4ac1f819/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.bam_stat.txt 1449/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/c697b920b3c3996595e97ae692f085/aih-tih-sc-408cca-R1_A23WJ53LT4_1.bam_stat.txt 1467/aih-tih-sc-408cca-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/dbec59eebc0bf3836c5bfb2e895193/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.junction_annotation.log 1180/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/045873e4807cdf9e9bda1f00f5a873/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.pos.DupRate.xls 1651/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/6b1b002d4271e45e76d1a53d0feb09/aih-tih-sc-387c73-R1_A23WJ53LT4_1.pos.DupRate.xls 1723/aih-tih-sc-387c73-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/725490855faf99dcc5c90e3e26d0fd/aih-tih-sc-06a169-R1_A23WJ53LT4_1.inner_distance_freq.txt 1090/aih-tih-sc-06a169-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/52d248a7b65235070c9d636583305a/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.attempt1.command.log 2043/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/97cb4447a1857739488a581b172423/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.bam_stat.txt 1483/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/b89746fef4d9a89ca6fab9f07c146d/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1625/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/797f7c2df5aa743ca513bf67f383e5/aih-tih-sc-965752-R1_A23WJ53LT4_1_1_fastqc.zip 717/aih-tih-sc-965752-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/be7345b80420744812ccc46482c87a/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_preseq_mqc.tsv 2301/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/d1fefc02891f0dc49c4e211fcd1d23/aih-tih-sc-da460d-R1_A23WJ53LT4_1_contamination_mqc.tsv 1779/aih-tih-sc-da460d-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/8d1c37a0a6bd38cec491aa40839215/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2347/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/cf802b2915dcac6ec961de144ac4e8/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.pos.DupRate.xls 1652/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/d6b8950af1f90ec5df16b395c1ae25/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.pos.DupRate.xls 1648/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/74a976e6a81e212dbfd37781ff36a5/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 423/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/72e09f4a435255e5d905d5209a50ed/aih-tih-sc-da460d-R1_A23WJ53LT4_1.bam_stat.txt 1523/aih-tih-sc-da460d-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/6eab969362bb01e56758a1ed916fcf/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.fastp.json 23/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/72fb1b2852de572d56ef482ebda723/aih-tih-sc-331e97-R1_A23WJ53LT4_1_contamination_mqc.tsv 1732/aih-tih-sc-331e97-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/8484a4abd3fff18b10ebb14514a352/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.fastp.json 35/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/2c973cfa528629a0f1b05245fc98d6/aih-tih-sc-da460d-R1_A23WJ53LT4_1.lc_extrap.txt 2166/aih-tih-sc-da460d-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/869fe971378fec73b47be8a4b04071/aih-tih-sc-284856-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1351/aih-tih-sc-284856-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/09892b8495bf9305e7158a58aaac55/aih-tih-sc-da460d-R1_A23WJ53LT4_1.fastp.json 95/aih-tih-sc-da460d-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/992ac6a481ff3a138dc2645ff3decb/aih-tih-sc-408cca-R1_A23WJ53LT4_1.infer_experiment.txt 991/aih-tih-sc-408cca-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/7888caa9cdc993c72072d9313e6529/aih-tih-sc-408cca-R1_A23WJ53LT4_1_kallisto_mqc.tsv 319/aih-tih-sc-408cca-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/f85970127c527ff63604e9e82d9cfd/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 541/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/778d272c07b46d7de29aed4499042d/aih-tih-sc-387c73-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2006/aih-tih-sc-387c73-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/4f700a4bc91200db3dcc61a4dc1884/aih-tih-sc-408cca-R1_A23WJ53LT4_1.log 223/aih-tih-sc-408cca-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/7ee00b5e234bde732a0c15a6ad0d3b/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1435/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/7a4c0ae1ffe793e39441e1dab2d23a/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.bam_stat.txt 1498/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/308b81bb6bf1831476d5349b652a1f/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1562/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/ffac6ce4fdc6b30aa54549ad7d811e/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.read_distribution.txt 1337/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/33048e76bf09aabbb4f951712a7d18/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 479/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/6177fcde8295888d1e6c9ee8b9966b/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.lc_extrap.txt 2159/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/f309792abf1b45ee1d1a3d28bb38fa/aih-tih-sc-ced210-R1_A23WJ53LT4_1.pos.DupRate.xls 1715/aih-tih-sc-ced210-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/c24f50152f053f5e44f8793133436e/aih-tih-sc-58b830-R1_A23WJ53LT4_1.lc_extrap.txt 2135/aih-tih-sc-58b830-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/85deecff69e7a43c703a2c5c8afac3/aih-tih-sc-58b830-R1_A23WJ53LT4_1.log 216/aih-tih-sc-58b830-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/c84e743ad1caa7f189fad0281bf17e/aih-tih-sc-af602e-R1_A23WJ53LT4_1.pos.DupRate.xls 1727/aih-tih-sc-af602e-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/35966b718d43e0ff50e26ed75790b6/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.pos.DupRate.xls 1705/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/56f3e6095dc46abea292de8e5884e6/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2391/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/da4360abcb0754a9b4774396828eed/aih-tih-sc-af602e-R1_A23WJ53LT4_1.infer_experiment.txt 1055/aih-tih-sc-af602e-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/a525ce2002d9961035e30961507915/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_kallisto_mqc.tsv 372/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/b8369089b7b5069512585332d80c9e/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 939/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/9672ed94d97bd096013b125fb8282e/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_2_fastqc.zip 744/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/87d8ca335af2a445d9147acf2c56cb/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.bam_stat.txt 1484/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/13db6bbcd948d8b3128e46d24a3823/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.read_distribution.txt 1336/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/07a9356fe33ba554fc9d30a0b53c92/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.attempt1.command.log 2088/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/e137ce8a21e3f011d055aa5f7ca878/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.lc_extrap.txt 2137/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/5342fe586d5eeee4d443263fc61d08/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.read_distribution.txt 1342/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/2ace0ed4b4e7a8307d4d25631fb9d7/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.bam_stat.txt 1451/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/aee031054316fbc1108a68f20a95d7/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.pos.DupRate.xls 1686/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/32565e1355a6010a747c7c410a9a10/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 875/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/83f4b081b15e7cc5aa9a51b81281e3/aih-tih-sc-387c73-R1_A23WJ53LT4_1.md.bam.metrics 1909/aih-tih-sc-387c73-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/6ce8aa4f8b88e91fb772ba1651fce1/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1624/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/5ac0052313a3f7c97f2428c4dcf16b/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.bam_stat.txt 1462/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/49a61bedd42acc292d75c9fdd2a86e/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.read_distribution.txt 1306/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/cca2d643b4141f7e3b1a0e43cfaf84/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.inner_distance_freq.txt 1073/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/cf8aac414c49e4f57aec91a856ffd8/aih-tih-sc-7de750-R1_A23WJ53LT4_1.lc_extrap.txt 2160/aih-tih-sc-7de750-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/6559dd28975b738bbd9f197b7fb8dc/aih-tih-sc-2905df-R1_A23WJ53LT4_1.md.bam.metrics 1882/aih-tih-sc-2905df-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/5a369a4eaeabbe6115d273a70fafe4/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 878/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/5f13583f2c39266d5f3126fc8e3caa/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 879/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/59c6b78de59edbaaf6f089b221d109/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.log 266/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/38c661d6e5e3c89c401ace38ad42f6/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1997/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/63597dcd3dea38eabdb8fa304eb8d6/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.lc_extrap.txt 2118/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/6e6330b4c8b84d508499cb31f503ca/aih-tih-sc-ced210-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 512/aih-tih-sc-ced210-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/6fa630b3ce940b3e4c5e6e22dc2e01/aih-tih-sc-951f98-R1_A23WJ53LT4_1.fastp.json 80/aih-tih-sc-951f98-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/daa6816ee67071295d40c90118ebb9/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.inner_distance_freq.txt 1127/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d5c152c4b589ebc2d214b834ec74c3/aih-tih-sc-58b830-R1_A23WJ53LT4_1.fastp.json 28/aih-tih-sc-58b830-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/31819e980824ba7c315701a982ad42/aih-tih-sc-2905df-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 561/aih-tih-sc-2905df-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/6124a3331a55037e1e6314514c1c79/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.md.bam.metrics 1847/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/be0fd505e1a479ea1910feb19b57cd/aih-tih-sc-64cace-R1_A23WJ53LT4_1.fastp.json 8/aih-tih-sc-64cace-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/50d506448e5485679ee80927a00a29/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.log 198/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/2193e45d816af2ad63a75506238720/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.Log.final.out 793/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/ad2f1a4e60c9781257f7b7dee05083/aih-tih-sc-64cace-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 872/aih-tih-sc-64cace-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/daf5ff605b5373e058d70bb67b8eb8/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.inner_distance_freq.txt 1082/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/27b28303426f93e04528cd671c8f7c/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.inner_distance_freq.txt 1146/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/3620faad46f4bc3c6de76e340472d2/aih-tih-sc-284856-R1_A23WJ53LT4_1.log 199/aih-tih-sc-284856-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/1949095b224f729569e047d1cb6e7b/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.fastp.html 143/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/93e322d79c35c9815d5607b4f3d9a5/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.read_distribution.txt 1331/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/18bb84218461f8fee459ced43b4945/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_contamination_mqc.tsv 1757/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/32059a0078d55307eeecd754b628cf/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.log 224/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/ed9ac3af6b9af650457f55b11a12a0/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.attempt1.command.log 2087/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/0e0dc208c9cd969ba15dbdd4b05d52/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.attempt2.command.log 2095/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/65219e9a6edd189607fc1587ccc126/aih-tih-sc-284856-R1_A23WJ53LT4_1.junction_annotation.log 1159/aih-tih-sc-284856-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/45c1da70d0ba9181d4644ae5611f05/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.lc_extrap.txt 2199/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/ecc0dcc7141ab31d8720b2f7f646c6/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 491/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/33293c239c7801914f973146c45c7d/aih-tih-sc-fee548-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2346/aih-tih-sc-fee548-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/4fb5155f01fe5f34aad28aab92a3bc/aih-tih-sc-bec563-R1_A23WJ53LT4_1_2_fastqc.zip 720/aih-tih-sc-bec563-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/2617a51a44a7e9fa0ee0499acfb333/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.pos.DupRate.xls 1694/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/21f8bbaf9d3640a4cf1e25650ed9f5/aih-tih-sc-bec563-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 529/aih-tih-sc-bec563-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/48e7b69e2d3655f4088f9086140d1a/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_2_fastqc.zip 766/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/9cec82a7722c6fcdaba072ca6463fc/aih-tih-sc-bec563-R1_A23WJ53LT4_1_contamination_mqc.tsv 1774/aih-tih-sc-bec563-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/994a92652218e47811b50f11143d41/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.lc_extrap.txt 2188/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/b266762180f55fa21cfd6d10c97852/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 873/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/2e31f187778a3010fdeabc8c44bdbd/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_2_fastqc.zip 696/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/52357a02f80e24967a71cb37da221c/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_kallisto_mqc.tsv 371/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/1d3cfa4c6deadc3ea3096be5415abb/aih-tih-sc-7de750-R1_A23WJ53LT4_1.read_distribution.txt 1301/aih-tih-sc-7de750-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/252621d0037d911924f89171790b27/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.bam_stat.txt 1529/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/b7992397c1833af90dba6546ae882d/aih-tih-sc-488877-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2348/aih-tih-sc-488877-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/ac1da297606f4ae34b85aa740faada/aih-tih-sc-55b175-R1_A23WJ53LT4_1.log 263/aih-tih-sc-55b175-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/7f4af687682cf91a1fbfe92c6ad791/aih-tih-sc-fee548-R1_A23WJ53LT4_1_2_fastqc.zip 674/aih-tih-sc-fee548-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/36fdc504221e79341e638774619e34/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_preseq_mqc.tsv 2282/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/6309bf4df7a649a6976259a57de78f/aih-tih-sc-804b22-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1597/aih-tih-sc-804b22-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/926e6094a1f53061cb85e2a55992c2/aih-tih-sc-804b22-R1_A23WJ53LT4_1_contamination_mqc.tsv 1784/aih-tih-sc-804b22-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/d17b23fac9fb9d04f3f7a34f4ede70/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.Log.final.out 846/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/2ea7324b03a2a93133b400a7223f72/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 565/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/46039edc432b8d750b285b04c05e4b/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1388/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/e8edaa3dfd49e604a0f597b69db8a8/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_kallisto_mqc.tsv 384/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/3e611e08a1190807c219b7e49a2cbe/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.bam_stat.txt 1507/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/b8954f23cdf3d64efca6a68c978183/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_kallisto_mqc.tsv 299/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/46e06b095a6229b8bb79c5917f964d/aih-tih-sc-488877-R1_A23WJ53LT4_1.attempt1.command.log 2065/aih-tih-sc-488877-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/75c746072954fea2b17227198969d8/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.md.bam.metrics 1901/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/e2bbec31f807d9ec07fd31d43cf746/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.fastp.json 32/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/6bb1f2137dafa7d1b2fade3211d055/aih-tih-sc-da460d-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 923/aih-tih-sc-da460d-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/6c57f9c442bb43eac0e9e964be3680/aih-tih-sc-55b175-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2388/aih-tih-sc-55b175-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/a90daff6e8193747f9ada053061d63/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.infer_experiment.txt 1013/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/2c8ea883e00050423714e520cb4c88/aih-tih-sc-606237-R1_A23WJ53LT4_1_preseq_mqc.tsv 2306/aih-tih-sc-606237-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/94234f3360f0388f8b5a9d0547617d/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.Log.final.out 833/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/b6096bbd4f1c98362a780c6b234f30/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.pos.DupRate.xls 1717/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/7505eebb7dc39b9ee0fd76e86224de/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.fastp.html 115/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/6512ec050a1f9fbd67f416e5e8cd24/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.bam_stat.txt 1495/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/5fae99ea06359f897e1e4459529d7c/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.lc_extrap.txt 2152/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/5d5a5442e2dabc4e2b12d4f4bcfb3f/aih-tih-sc-ced210-R1_A23WJ53LT4_1_preseq_mqc.tsv 2303/aih-tih-sc-ced210-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/6eab969362bb01e56758a1ed916fcf/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.fastp.html 119/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/3bd05d649befe189ed662aeeb9a75c/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_contamination_mqc.tsv 1787/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/35e9a98365bb4a559c68e0f511954a/aih-tih-sc-7de750-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1606/aih-tih-sc-7de750-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/8e662828c832871b44056fe5b76bb8/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_preseq_mqc.tsv 2283/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/5a2b758073dc7421134a8a3dd89fce/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2011/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/209bbe875af53c8f095d3f61ba14cc/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_1_fastqc.zip 623/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/4cf1da435aa02b074abe3e40db7c3d/aih-tih-sc-835699-R1_A23WJ53LT4_1.pos.DupRate.xls 1714/aih-tih-sc-835699-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/d9/55a8cf7b0010613f351fe33d8d050c/workflow_summary_mqc.yaml 2/workflow_summary_mqc.yaml")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/6e6330b4c8b84d508499cb31f503ca/aih-tih-sc-ced210-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 511/aih-tih-sc-ced210-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/983c2d0e33d07421196d4c064a70a8/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1376/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/e9646983da6281ea1f76c9934c0e34/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1383/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/8a3fb0ecae5f10746d28d3221fce63/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.junction_annotation.log 1161/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/488b660a8db1caf94bc4f038121d15/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1598/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/1ec48816e1cef473ccbc8477e197e1/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_1_fastqc.zip 691/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/90b454b57343be6f2d80388875de68/aih-tih-sc-560d56-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 880/aih-tih-sc-560d56-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/77e7aa1dd4f15823382906708c5fe5/aih-tih-sc-560d56-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1359/aih-tih-sc-560d56-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/12f015e1b81180ec4fc0071ebe6279/aih-tih-sc-387c73-R1_A23WJ53LT4_1_contamination_mqc.tsv 1817/aih-tih-sc-387c73-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/9596cd1017920eae2e02d8f571b172/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.log 213/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/9308f57c3448ea641aaa2b85bb9b7e/aih-tih-sc-64cace-R1_A23WJ53LT4_1.infer_experiment.txt 968/aih-tih-sc-64cace-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/2968eb9bb373e778f29f1913ad4953/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.infer_experiment.txt 1050/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/5fddbc62ac17e017991d1c334741fe/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.pos.DupRate.xls 1691/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/570db05d21fc16b66d82c0261fc1ad/aih-tih-sc-7de750-R1_A23WJ53LT4_1.inner_distance_freq.txt 1108/aih-tih-sc-7de750-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/2475ed8ff62943100e8093144be8f2/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1566/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/4fb5155f01fe5f34aad28aab92a3bc/aih-tih-sc-bec563-R1_A23WJ53LT4_1_1_fastqc.zip 719/aih-tih-sc-bec563-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/b9588f7b439b4e42bc27fa12b82f79/aih-tih-sc-804b22-R1_A23WJ53LT4_1.Log.final.out 829/aih-tih-sc-804b22-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/e1fa5f8d4855c3aff5f3b3c4ee2794/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.lc_extrap.txt 2204/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/86003613aab3e1f5da8294c6ba70e1/aih-tih-sc-64cace-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 398/aih-tih-sc-64cace-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/54b08e94f364f340ef016d7ef8f304/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.fastp.json 56/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/b41d77600b90fcdcaeaab1e9af0473/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.infer_experiment.txt 1004/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/0841b3d5ffacf821e92feffa229331/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1391/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/ba94511981f058d58af79a43be8bd1/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.pos.DupRate.xls 1663/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/447ead814205546a81fcceb77652d2/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_2_fastqc.zip 726/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/586bcdb47bb273afbad88d785cda95/aih-tih-sc-965752-R1_A23WJ53LT4_1.fastp.json 90/aih-tih-sc-965752-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/1282a666e46bb5fb603a5d661404ab/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.attempt1.command.log 2096/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/d6ca4658e06a2805d20741699b8bd9/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_preseq_mqc.tsv 2222/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/fadb7d9f9f7a1a2279e4b732a6186f/aih-tih-sc-284856-R1_A23WJ53LT4_1.Log.final.out 775/aih-tih-sc-284856-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/a1b4a25f01b690352400842b42a7b1/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 477/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/85dd8204bf330c8fb91438a7cb3a23/NTC_0001_0001_A23WJ53LT4_1_trimmed_2_fastqc.zip 388/NTC_0001_0001_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/f85970127c527ff63604e9e82d9cfd/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 542/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/f2d0c7bbdb8f385afc9ad766eb916d/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.lc_extrap.txt 2133/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/a8623fb62f60a10aa83227d25a1079/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_contamination_mqc.tsv 1750/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/d84fc0803b2d613b681d22855dd437/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1394/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/0f1951112dfac24f522694b2b0ca18/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.Log.final.out 803/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/9eee3cafd80688e1837894d9146333/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1939/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/1479edfc0fb051b7b6574f5e196e65/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1967/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/2ae16f7bf53f120c5efb1ecbb3d162/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.pos.DupRate.xls 1690/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/7931f2f3e80794cddc9a167bbf694e/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1572/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/2cef71628f56f8b5e95a7798ba6c83/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.infer_experiment.txt 965/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/3eacd81d251ee168b417c29d8eb5c2/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.inner_distance_freq.txt 1080/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/e3042272b007656cc4f8be49cfbf7a/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.lc_extrap.txt 2200/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/79915faf78ded27bb883d456da5363/aih-tih-sc-560d56-R1_A23WJ53LT4_1.attempt1.command.log 2040/aih-tih-sc-560d56-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/6ba960ae64e0285afb034bac44b143/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 534/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/6dbb586ebb4ec870ef1e8fee414be4/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_contamination_mqc.tsv 1790/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/dffc931efa2941c607d14f300d7235/aih-tih-sc-58b830-R1_A23WJ53LT4_1_2_fastqc.zip 626/aih-tih-sc-58b830-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/66d5fa523a8aa855a2973c4b8d167c/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_kallisto_mqc.tsv 330/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/5a380c7b027e09d7d061cf9cb3091e/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.inner_distance_freq.txt 1101/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/8b9fed0f895a15b9f09a106776ad5d/aih-tih-sc-64cace-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1352/aih-tih-sc-64cace-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/a0b054f25b6d5f3f7d8fe6cf2386b1/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.pos.DupRate.xls 1641/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/229e6fa96608d8cf1222a42f520b5a/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 410/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/4c8ccf51e211adbdc77739db9f99bf/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.fastp.json 72/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/4f104bca7669b51396ad4b493c9859/aih-tih-sc-58b830-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 436/aih-tih-sc-58b830-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/31819e980824ba7c315701a982ad42/aih-tih-sc-2905df-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 562/aih-tih-sc-2905df-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/ee63a8e953d2dd1d86e986defc9403/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 445/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/5672e74608f142edbf127e8101b6d2/aih-tih-sc-7de750-R1_A23WJ53LT4_1.pos.DupRate.xls 1685/aih-tih-sc-7de750-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/02a865056c9fdf07274001bde943d6/aih-tih-sc-674b78-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1604/aih-tih-sc-674b78-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/a342e8506a321a17ea0466288096fe/NTC_0001_0001_A23WJ53LT4_1.md.bam.metrics 1827/NTC_0001_0001_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/82083ce8b09b9d667394069307b539/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fastp.json 55/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/a7e34c33b2ccabfc7dc5edbcfd6b6e/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.fastp.html 102/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/bcdad11f66d79b2d3efbe1db021db4/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.junction_annotation.log 1179/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ce7d4d2ead07e903522aa5254266f5/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_1_fastqc.zip 605/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/65efd37b405f03d3d3aa2deae60e00/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.infer_experiment.txt 985/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/84e3237f7266ceef2a9d22d6ec8877/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2392/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/df02902a317b6929f205ce0d33ae9e/aih-tih-sc-7de750-R1_A23WJ53LT4_1.junction_annotation.log 1207/aih-tih-sc-7de750-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/1d9939762e60cebd289e3eb226589e/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.junction_annotation.log 1187/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/47680220a01fb0655d20c89c927723/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 447/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/2ea7324b03a2a93133b400a7223f72/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 566/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/fcc391c21dec0310c3dbfd1b19fe6e/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1349/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/f66eda6597b699f1a3d54a82c0ff3e/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_preseq_mqc.tsv 2227/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/4b5ad1062ee64c4733ea321f512ddc/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.log 210/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/c795d020fffab25190006d24ad37dc/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.Log.final.out 839/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/438aaa1480af93f3915bd3297d0229/aih-tih-sc-55b175-R1_A23WJ53LT4_1.junction_annotation.log 1250/aih-tih-sc-55b175-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/b29dc9502790a9b7e37abe0ec1aba4/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.inner_distance_freq.txt 1069/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/f604e89586aba285dbbf71171d5981/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.Log.final.out 859/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/b380c703ffcf6bf198bcb676780df4/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.Log.final.out 787/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/20053ec572cac53135af5b02d0ca05/aih-tih-sc-387c73-R1_A23WJ53LT4_1.fastp.html 138/aih-tih-sc-387c73-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/167b3b0984f2198e741bae685952ea/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1384/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/9efdc0edd54b71379f0a840e5d8bad/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1942/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/20c3de14120b5530ace3c386cf32f0/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.lc_extrap.txt 2138/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/73e0ebe52cf80d94de965d742cebbe/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.junction_annotation.log 1239/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/f3f281186929e6c013b6245418b81b/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 505/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/2ef0291c31013b465173b75f35465a/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1549/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/61d6212ff275226c3a7615cfe80781/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1941/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/2c84af6f25d71699c8c0e8ee2cf81d/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 924/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/18f6ba4edcdc30a4d4b79ec1baa49d/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 917/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/4c6b2d5599825c44d994c5fcca4f8c/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.bam_stat.txt 1491/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/2193e45d816af2ad63a75506238720/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 889/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/4a73e1ecd9aafb7f204ea535d828d5/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.bam_stat.txt 1502/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/bea9ab07df8a47e3455e880f4b7d4e/aih-tih-sc-da460d-R1_A23WJ53LT4_1.infer_experiment.txt 1015/aih-tih-sc-da460d-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/14348edae0b869ed7fc0538478c674/aih-tih-sc-804b22-R1_A23WJ53LT4_1.bam_stat.txt 1501/aih-tih-sc-804b22-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/0446493639b01825b0f28d4345c6d0/aih-tih-sc-408cca-R1_A23WJ53LT4_1_contamination_mqc.tsv 1756/aih-tih-sc-408cca-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/7d7fe0a464472d8c07c56298e54d2a/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.fastp.html 114/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/d8ce0016e33eb8550380080ba4717a/aih-tih-sc-58b830-R1_A23WJ53LT4_1.read_distribution.txt 1283/aih-tih-sc-58b830-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/795059fab52cb19364c035fbf6e0f4/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.fastp.html 106/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/e06838c138329421e1a14e206b4c03/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1983/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/2fb74914c2e491de96ed161fba71a0/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2368/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/2aa40f7de0c8af7c8fae0634bc4894/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.attempt1.command.log 2084/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/dc3aec2566cd6ee505f0009abe4574/aih-tih-sc-06a169-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 898/aih-tih-sc-06a169-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/ea485e742567cc6a5c3fe3cb553f59/aih-tih-sc-951f98-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1437/aih-tih-sc-951f98-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9422aee2ae840c26a16655c80f3632/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.attempt1.command.log 2050/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/a4a1876779f5a897cb7035a4c2bd85/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.Log.final.out 837/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/d8491fd805df882db6602bbbb54296/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.inner_distance_freq.txt 1077/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/a0a3b85ffb5aaec332c6c43632cc5b/aih-tih-sc-64cace-R1_A23WJ53LT4_1_kallisto_mqc.tsv 296/aih-tih-sc-64cace-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/d46db6f431a516503dcc96ec56b43a/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1614/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/01a3e039e1ae9c5ebeca394f5f2e1d/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.infer_experiment.txt 1037/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/87120da794ec5c3172f05154ea645a/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1579/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/e89875c01b10573b2049ff264f5d8d/aih-tih-sc-606237-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1995/aih-tih-sc-606237-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/e2bbec31f807d9ec07fd31d43cf746/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.fastp.html 128/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/b619b3e49ca102dd1ecb7b892dd279/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_kallisto_mqc.tsv 326/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/59ea08472885eb2e40282553c21ff4/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.lc_extrap.txt 2124/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/9ea8c85676000e83e7e3ea443d0225/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.md.bam.metrics 1892/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/9df5254248cf1a5a28299be9462fff/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.fastp.json 60/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/843a525bda7248233f0ecb0042f9c1/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 554/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/f1605ba3bbb24ce3dff24fd1223b37/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.bam_stat.txt 1468/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/0142956f3e51c31b28181255ff2053/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.lc_extrap.txt 2187/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/2725e6bcbbffcd2232437f7d9ab19d/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1423/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/dc9b9d9a9d4bf19aa71f83326af909/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.Log.final.out 842/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/d61f7b14d37fbebf810674b904af7e/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.read_distribution.txt 1307/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/2d7e120252c7ec04fdb2db418c3958/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_1_fastqc.zip 647/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/bb66fa1befc3f10799f321540a94fc/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 391/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/401b9f38746438a85ec0be973e26c2/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.pos.DupRate.xls 1673/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/f99b3cd17fb296563fd6f317be582b/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.pos.DupRate.xls 1676/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/d091f2555173e4ecf712a457d0f662/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1434/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/b7437e46f10a16e882d7a060da461b/aih-tih-sc-da460d-R1_A23WJ53LT4_1_2_fastqc.zip 712/aih-tih-sc-da460d-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/1a2884c9e531616580e2ae04ee8422/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.infer_experiment.txt 1036/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/3d137371c9f7be226354da6b95cd4d/aih-tih-sc-560d56-R1_A23WJ53LT4_1.junction_annotation.log 1168/aih-tih-sc-560d56-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/3669a180130ca2bddcf7b4d434ae28/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.md.bam.metrics 1885/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/d9699af50513f5705bed35ea6cbb86/aih-tih-sc-58b830-R1_A23WJ53LT4_1.pos.DupRate.xls 1660/aih-tih-sc-58b830-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/8b585d4cb2c91c84ab53a92d9bdb8a/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.bam_stat.txt 1446/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a90cf0adae203c8bbdda224295c6a9/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.attempt1.command.log 2089/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/0e4119779eb270ed19f1d12ac96d94/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_preseq_mqc.tsv 2213/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/be99b7ad39a4607f05b6436974ee9f/aih-tih-sc-7de750-R1_A23WJ53LT4_1.fastp.json 66/aih-tih-sc-7de750-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/740db433f38dd3b764c143c88d77a1/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.bam_stat.txt 1464/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/b3d766e63b1a5876b82ede13076f3d/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.Log.final.out 865/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/47d54182c8cc617ff4a31a1f62c94c/aih-tih-sc-06a169-R1_A23WJ53LT4_1.infer_experiment.txt 994/aih-tih-sc-06a169-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/af441a515637cf66a5398f9a6b6dbb/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_contamination_mqc.tsv 1765/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/6ba960ae64e0285afb034bac44b143/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 533/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/32a15d13dbb4366a37629b2d55b07e/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_1_fastqc.zip 619/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/66baa2a550080276610d7761699301/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1402/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/8ad39527251496ffd2ce74d18eb81c/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 524/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/cafc7abac3c3f2a3be5dda8244d749/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.infer_experiment.txt 1020/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/e16d7e75af5cdf7e6cbb1265babce2/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_1_fastqc.zip 671/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/fa9454929f893bebc5a92bd4ded602/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_kallisto_mqc.tsv 344/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/eb15d6741eac07717efb55b363990d/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.inner_distance_freq.txt 1088/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/9eb6d83ac0fbc45094c12c1a204250/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.junction_annotation.log 1186/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/309c094c0fbba19d1b726f24e161c7/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.bam_stat.txt 1522/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/7bfd0f3c4b764fc516364f09924895/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.bam_stat.txt 1470/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/9cf85ec192a11d0ca7345cfec713df/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.log 283/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/936c75eaaa10b892341e6f862c3d53/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_2_fastqc.zip 658/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/28caf3a4313e412843ec47f052b5c1/aih-tih-sc-64cace-R1_A23WJ53LT4_1.read_distribution.txt 1256/aih-tih-sc-64cace-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/2f76aca2f43dc4b6139ea2e5347123/aih-tih-sc-965752-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 912/aih-tih-sc-965752-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/25b72cb224c7954ee15c53766214c1/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1609/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/457136fe5da2314ca13eca14a8093e/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1551/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/47680220a01fb0655d20c89c927723/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 448/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/66a8f7c852b2e3e3087293858a4852/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.log 271/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/3f0dadffc1652456b71cf6df307e29/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.lc_extrap.txt 2157/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/b118892a939ef3f5b1188399031feb/aih-tih-sc-284856-R1_A23WJ53LT4_1.fastp.json 7/aih-tih-sc-284856-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/586bcdb47bb273afbad88d785cda95/aih-tih-sc-965752-R1_A23WJ53LT4_1.fastp.html 186/aih-tih-sc-965752-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/715e73ed521af943fe0d85ab73496b/aih-tih-sc-606237-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 481/aih-tih-sc-606237-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/0349279db2ae64af965c4a6cae128e/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.read_distribution.txt 1330/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/bc64e996e7b1197681a54270a2e98a/aih-tih-sc-331e97-R1_A23WJ53LT4_1.log 196/aih-tih-sc-331e97-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/b9daba0a4d2300077558157a219848/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1555/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/6ae8535e53ed8e6257a7f4257da63f/aih-tih-sc-64cace-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2307/aih-tih-sc-64cace-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/a5d766ffdf44586796da3b51796173/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.fastp.html 140/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/deacfed1d0b73c959ef77e1abaefe7/aih-tih-sc-408cca-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 450/aih-tih-sc-408cca-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/f395c2d0a005155f175afd631d3fd4/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.infer_experiment.txt 979/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/4412bcd8496130f5ac6537391d829f/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.lc_extrap.txt 2193/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/12c798745ebf607cd3d9e17b1af4d6/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1592/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/7658fe18779e8d319699ead37a6f7d/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2012/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/96f7603624451354190d58cd04523d/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_preseq_mqc.tsv 2273/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/ee63a8e953d2dd1d86e986defc9403/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 446/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/13721413e2d6f5b491e2f66948a75e/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.pos.DupRate.xls 1695/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/29b980f498fba24be36bea0012d9c2/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_contamination_mqc.tsv 1809/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/834c6f1cbfd5039cdb01a914a15782/aih-tih-sc-674b78-R1_A23WJ53LT4_1.read_distribution.txt 1320/aih-tih-sc-674b78-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/262789502885459c6d04b6f2628977/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1413/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/61f767ae2d94f8cdcfb0a7ef0cb908/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.junction_annotation.log 1203/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/b348d4e05efed4a8bb967318c704c1/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1546/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/4432c227899672c1e95fe570f2380c/aih-tih-sc-af602e-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 507/aih-tih-sc-af602e-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/50b2f2b0b366a26454d9d7124622d0/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1399/aih-tih-sc-2905df-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/952fb5aad9d871657565f7b6a0f5f5/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_1_fastqc.zip 733/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/5d01a46982c356d4c9677f02a0b2f7/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.inner_distance_freq.txt 1112/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/76b5e363fb602445bdb53a81e06d84/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_2_fastqc.zip 634/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/bfd40cbef426c89334abbc50e3be60/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_1_fastqc.zip 737/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/715e73ed521af943fe0d85ab73496b/aih-tih-sc-606237-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 482/aih-tih-sc-606237-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/f3f281186929e6c013b6245418b81b/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 506/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/84b40bff73c2b863fa3552526d0207/aih-tih-sc-951f98-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 953/aih-tih-sc-951f98-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/47ed4362c2521209360b6d50b16d51/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_preseq_mqc.tsv 2223/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/dc8afe3c712749ac2a3a2f02cf6a33/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.attempt1.command.log 2052/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/6aaf598551f6e0c9b6537f261edca9/aih-tih-sc-951f98-R1_A23WJ53LT4_1.inner_distance_freq.txt 1145/aih-tih-sc-951f98-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/73b0eecdc046225171d4c2f59e67f5/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.read_distribution.txt 1259/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/5c07f6a0c01422461cefa6173d3a5f/aih-tih-sc-669302-R1_A23WJ53LT4_1_2_fastqc.zip 770/aih-tih-sc-669302-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/27a0829373526b95b07062d7c1ae18/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.pos.DupRate.xls 1697/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/aef909aebbe33a27a45975f242e5a4/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2362/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/3198ca5e70e4f0837a3475af9dcc00/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.fastp.json 14/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/2d4efa443b59f3afe99b0ce340a90d/aih-tih-sc-408cca-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 895/aih-tih-sc-408cca-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/4d3dd79f1ce9842207fea2fa64fc80/aih-tih-sc-58b830-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1372/aih-tih-sc-58b830-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/5a369a4eaeabbe6115d273a70fafe4/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.Log.final.out 782/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/d8d997e2362f6e7dde2c4ef1c70efc/aih-tih-sc-965752-R1_A23WJ53LT4_1_contamination_mqc.tsv 1780/aih-tih-sc-965752-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/692e6fa6c52862e6970bf946a4eedc/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.bam_stat.txt 1466/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/3322ecdc00be40e85ed33986bc3ded/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.md.bam.metrics 1848/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/cb143cc9604395078367d37d3de4f3/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.fastp.json 41/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/86003613aab3e1f5da8294c6ba70e1/aih-tih-sc-64cace-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 397/aih-tih-sc-64cace-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/d59006c47995c52ce3adf97725a21b/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.log 201/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/eddba024138e4a1af8467a3df8d266/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.inner_distance_freq.txt 1125/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/3e1ec049df6ecdf82750c641e65f1b/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_1_fastqc.zip 627/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/f5f68b5df402fb143501a02f6a5bea/aih-tih-sc-606237-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1427/aih-tih-sc-606237-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/36743677c03c5db1a746deed03964b/aih-tih-sc-2905df-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1584/aih-tih-sc-2905df-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/dbf4ca745625a4bbf8d1e23324e823/aih-tih-sc-bec563-R1_A23WJ53LT4_1.bam_stat.txt 1481/aih-tih-sc-bec563-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/520f70e32b7665a1060d3590f07d50/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.infer_experiment.txt 1054/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/5e9a501cecb960ba346015cf5c78d5/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.fastp.json 96/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/f9ba604dd77d50975db8173cd5ec48/aih-tih-sc-55b175-R1_A23WJ53LT4_1.infer_experiment.txt 1058/aih-tih-sc-55b175-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/b048449d0f03f610549cdf64ead71e/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.read_distribution.txt 1258/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/5ccb5867df8f24b0970b56ac8f70ff/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.infer_experiment.txt 969/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/98f4bcac882baea31492872d0cb713/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_2_fastqc.zip 596/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/db124668bc5b3b7bc10df3e0e85aa6/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1612/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/6efd774ec9d72d38253717f1d61eb3/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bam_stat.txt 1488/aih-tih-sc-2905df-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0a26db03197266b65df2330ec0aed6/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1601/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/79cbe41faa53a673bcd1886f174629/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_preseq_mqc.tsv 2252/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/7fd65d8bb5308395488d4aa92e3dbb/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.bam_stat.txt 1489/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/3057752e9b18cedaef3ca0bdce8f89/aih-tih-sc-488877-R1_A23WJ53LT4_1.junction_annotation.log 1206/aih-tih-sc-488877-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/32b4048e1395a2192aae84e776b5d0/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_2_fastqc.zip 764/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/523cb30afbc9cdc4096f9317901415/aih-tih-sc-bec563-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2382/aih-tih-sc-bec563-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/0c07b9b1de29cdf47163c7ea1c720b/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 399/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/5cda335bda101b5167dc1925638543/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1355/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/15031b34651c34a9730696e3351c17/aih-tih-sc-951f98-R1_A23WJ53LT4_1_contamination_mqc.tsv 1824/aih-tih-sc-951f98-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/da239dfbae88a0aa07470f99f62c86/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_2_fastqc.zip 622/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/ef8ad89b69bf90569318158e992c0b/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.fastp.json 24/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/a0d557773d3a9c2b740f3684069b86/aih-tih-sc-331e97-R1_A23WJ53LT4_1.fastp.json 4/aih-tih-sc-331e97-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/bfb9e40c67b1940435fa2a79803975/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_2_fastqc.zip 604/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/37f71682c9cbbe77c7dab5804ee237/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.attempt1.command.log 2060/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/39577898231dd25a2ace0838bfd3a2/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.infer_experiment.txt 971/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/e4a8cc8a530f62f6b530fc1e0cedc8/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.junction_annotation.log 1246/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/7e9ea610cb4becf1096f171f3e5678/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_preseq_mqc.tsv 2246/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/c46971972eeb88877c132f8f622f62/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.inner_distance_freq.txt 1123/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/994a6a88da715ebbbcb5a7f0268f23/aih-tih-sc-387c73-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1608/aih-tih-sc-387c73-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/5366637866616122072266ddc6306d/aih-tih-sc-58b830-R1_A23WJ53LT4_1_contamination_mqc.tsv 1761/aih-tih-sc-58b830-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/a56779d77c5ce8979e643265c224fb/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_2_fastqc.zip 630/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/f73a8f61f5e6aaacb1065e0882feb5/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 921/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/8aa9834feff52d75cc92ed9e2c2812/aih-tih-sc-ced210-R1_A23WJ53LT4_1.bam_stat.txt 1509/aih-tih-sc-ced210-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/e2fe312e30a744bd9a3d76aae2ee3b/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_kallisto_mqc.tsv 333/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/0e4bc841ee82bcdc62e5c031a72ed9/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.junction_annotation.log 1225/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/55de92f8057bcb872477b2ef1fe1b4/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.read_distribution.txt 1335/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/17268750401d205b03e9f719ad3cc9/aih-tih-sc-64cace-R1_A23WJ53LT4_1_1_fastqc.zip 589/aih-tih-sc-64cace-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/d7bb9fb0ce59bd1bffd880166cf8ff/aih-tih-sc-488877-R1_A23WJ53LT4_1_preseq_mqc.tsv 2257/aih-tih-sc-488877-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/35ccdb20a49b14fd870b81ec30bf65/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_kallisto_mqc.tsv 292/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/c685011e66f6dcf221d5f0fba10c3a/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.infer_experiment.txt 974/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/5912deb3f8dd82dc356dbfa5095c15/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.inner_distance_freq.txt 1111/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/68d4d6f76c571b53fdeecd3d8676da/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_2_fastqc.zip 684/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/deb4f79febab5a9c5b87b7052acd97/aih-tih-sc-ced210-R1_A23WJ53LT4_1.inner_distance_freq.txt 1138/aih-tih-sc-ced210-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/5558579314f63e8244e6da285c5c3f/aih-tih-sc-af602e-R1_A23WJ53LT4_1_kallisto_mqc.tsv 353/aih-tih-sc-af602e-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/c50242a3b8089f1639dbc5907f5ef9/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 430/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/4ac125ec587c063619152df3db0ccf/aih-tih-sc-606237-R1_A23WJ53LT4_1.md.bam.metrics 1895/aih-tih-sc-606237-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/3ab48ac185e8d55ab28fe09ccab7ba/aih-tih-sc-fee548-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 920/aih-tih-sc-fee548-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/aee8405a183834dca6dab8ed1494fa/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.lc_extrap.txt 2206/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/ee1db144868500c017c07fe8349c5e/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.junction_annotation.log 1182/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/9e1830a28c0299b7beb6071b871ef0/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1622/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/2c65d5f4ecee402c9307e65f959dd6/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1373/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/ac46c044ced58d5c4339276878a9bc/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_preseq_mqc.tsv 2289/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/ed5f5a0b9d2fe459a204a4dbf269bb/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_contamination_mqc.tsv 1822/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/cac06d916095ec356addc7487e9033/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 425/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/6dbb82e220baf0a774c7d651ab5fec/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.fastp.html 122/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/e48f47bb0229d4251dc438dd6de039/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1419/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/289e0f2c948917f4ae156edea15e78/aih-tih-sc-7de750-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1393/aih-tih-sc-7de750-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/321d1db9df66a0d99fa3d187d7ee18/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.md.bam.metrics 1891/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/d33575db21deb95009f2582dabc6c4/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.fastp.html 126/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/279bb57006950d0432c933be0eaa2c/aih-tih-sc-550807-R1_A23WJ53LT4_1.infer_experiment.txt 972/aih-tih-sc-550807-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/db861d6bc4b9e8e61efe2d17c13949/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1354/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/722d42e1cc3cdfe9ef25b0719d67ba/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_contamination_mqc.tsv 1755/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/881e2ec1681d9a50219feb9d51aed1/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_2_fastqc.zip 660/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/d6fec15b270a04f09e02c3f5d119fb/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_preseq_mqc.tsv 2259/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/1ab317a7f7f3c8b50aef586effc13c/aih-tih-sc-804b22-R1_A23WJ53LT4_1.fastp.json 67/aih-tih-sc-804b22-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/90a6221b8c685a879eb955018de790/aih-tih-sc-2905df-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1979/aih-tih-sc-2905df-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/1fb03e88b45853d7dd8c2da3d419cd/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1965/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/d696d47b108077624bc05e720e40dc/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.attempt1.command.log 2058/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/0c07b9b1de29cdf47163c7ea1c720b/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 400/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/f6febf921aba19e1a426fd607d436c/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_kallisto_mqc.tsv 363/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/fd5b2c85bf4445985cccac62c3c7f2/aih-tih-sc-606237-R1_A23WJ53LT4_1.log 274/aih-tih-sc-606237-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/73ebe6b28cd9f12f59765621def3cd/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 947/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/bb66fa1befc3f10799f321540a94fc/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 392/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/46d7fa99efac885e368a8cbb5d7811/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.inner_distance_freq.txt 1071/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/4412bcd8496130f5ac6537391d829f/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.attempt1.command.log 2097/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/2586d155acf8199f548937cf03060f/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.pos.DupRate.xls 1653/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/65d73ad11887321451acd93d1c3abc/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_contamination_mqc.tsv 1768/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/cc6559a3952a0c2158777035fd6e0b/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.md.bam.metrics 1904/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/1e2ae79fafa47eed19c6b2a693d49b/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.pos.DupRate.xls 1680/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/aaf9403dea2781883f8381f00bc4bf/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_kallisto_mqc.tsv 379/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/01e6820dfb274c334be3c7cf472670/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_1_fastqc.zip 609/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/e269c41c3424cf9d2567a98a4debb1/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.junction_annotation.log 1189/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/bf49f8fca674372de2aac2d2e9e665/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1424/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/41c7ed0149538719ea4376c4708d40/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_2_fastqc.zip 690/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/eeb14be4483c6789d6e43d4f3e3385/aih-tih-sc-331e97-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 390/aih-tih-sc-331e97-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/86844d5b0fc2d5fd5f0115e733772f/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_2_fastqc.zip 640/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/4ef50d961158a39ff90962a1e65dc0/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.pos.DupRate.xls 1664/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/eb25acc2d7856c50a1369f2d40f6ca/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1934/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/3465276d087141742ae9a1ed03cf68/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.bam_stat.txt 1457/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/872f72462827cbd176fe969594c639/aih-tih-sc-550807-R1_A23WJ53LT4_1.bam_stat.txt 1460/aih-tih-sc-550807-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/58af2a5f5cbec4d3a3a3c49931a0f1/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.attempt1.command.log 2069/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/0c71aa16047f8ff27c0be6607893db/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.inner_distance_freq.txt 1107/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/843a525bda7248233f0ecb0042f9c1/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 553/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/9ebab7f1fb66fc86ab09be5397f09e/aih-tih-sc-ced210-R1_A23WJ53LT4_1_contamination_mqc.tsv 1808/aih-tih-sc-ced210-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/db77bb1004b22a9c4893686985bd9d/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_contamination_mqc.tsv 1812/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/1492c94bc926a0b07ca86bf2ba7acf/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2369/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/c8504be520cd9b503995626c1f104e/aih-tih-sc-58b830-R1_A23WJ53LT4_1.Log.final.out 796/aih-tih-sc-58b830-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/836162a3dcea1c4da479423edb64b5/aih-tih-sc-550807-R1_A23WJ53LT4_1.lc_extrap.txt 2142/aih-tih-sc-550807-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/134e4c4402f07e36ee7e637c97e159/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_preseq_mqc.tsv 2284/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/286805d3e91b2cc40c767361a26b72/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 417/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/999c1d15a129d037955506d96b4700/aih-tih-sc-2905df-R1_A23WJ53LT4_1.lc_extrap.txt 2179/aih-tih-sc-2905df-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/eeb14be4483c6789d6e43d4f3e3385/aih-tih-sc-331e97-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 389/aih-tih-sc-331e97-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/9ec104886c319131ce8961a4b2e251/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.junction_annotation.log 1213/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/0141f576c109c30f5807cb3fa4feed/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.junction_annotation.log 1237/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/e877ddf3205175c7b91e396227d5b3/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2381/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/8c784af5c63b442908d6ff661dfa63/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_contamination_mqc.tsv 1744/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/3d68c6b41575329b0f8673b8641176/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.log 228/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/9e69d7064fdd6f92137641a7aadc9b/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.lc_extrap.txt 2132/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/da239dfbae88a0aa07470f99f62c86/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_1_fastqc.zip 621/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/ab1ecef568cb5d38abb03fb63db551/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.Log.final.out 810/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/197363eefece1023c8ae96004504f4/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_preseq_mqc.tsv 2241/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/b57abb1b7a262b7cd06fce97b4113b/aih-tih-sc-674b78-R1_A23WJ53LT4_1.attempt1.command.log 2080/aih-tih-sc-674b78-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/ee39d5031c628f34c828765ffa0b75/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.fastp.html 187/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/9aad8d8e54b7b05ea659daa741227d/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.fastp.json 16/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/15e44d2074f95bfa0a7c72b3bd8958/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_2_fastqc.zip 602/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/b703278890c7502aed426efff0e76c/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.read_distribution.txt 1333/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/99234ff72195b314a2f77f3dd0c402/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.md.bam.metrics 1839/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/7a7e5c7942b6f4dd5d8ee52aa4f885/aih-tih-sc-af602e-R1_A23WJ53LT4_1.log 257/aih-tih-sc-af602e-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/2f76aca2f43dc4b6139ea2e5347123/aih-tih-sc-965752-R1_A23WJ53LT4_1.Log.final.out 816/aih-tih-sc-965752-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/cc5edac498f77f91d35243b72e9870/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_preseq_mqc.tsv 2280/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/e88c47953a7f0cd33d14ed88aae2c6/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.Log.final.out 797/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/a321580537ba11b20b9a37e96a8f0d/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1558/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/1e3713a0fe08ce9ce321eac8c61076/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.bam_stat.txt 1499/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/6d9deb59144d1b142b4143c5991579/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1626/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/73923da7fbad5b1e76766d4d289649/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.junction_annotation.log 1194/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/8ad39527251496ffd2ce74d18eb81c/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 523/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/afdb4a10835e6c52d1c920565c8a71/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_preseq_mqc.tsv 2287/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/6c509b285a33ba46637fa6052c7164/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.attempt1.command.log 2054/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/f74a3489f2b9259615a2eec482ae13/aih-tih-sc-55b175-R1_A23WJ53LT4_1.fastp.json 62/aih-tih-sc-55b175-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/b5fc27b8c03885c2166f3a768e167b/aih-tih-sc-af602e-R1_A23WJ53LT4_1.fastp.html 180/aih-tih-sc-af602e-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/63a9274fcd7e9cddadf0d8ecee73d9/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.log 281/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/47b90d37c94960e19abf5e86a5a127/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_preseq_mqc.tsv 2300/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/6fa630b3ce940b3e4c5e6e22dc2e01/aih-tih-sc-951f98-R1_A23WJ53LT4_1.fastp.html 176/aih-tih-sc-951f98-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/1698d054d04f581f2da01abbf9c74a/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.fastp.html 182/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/afab2c7f695c639d4f14060aa6bcb9/aih-tih-sc-06a169-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2329/aih-tih-sc-06a169-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/5a15f5ef29b296d506ed6c6ae6914c/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1596/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/9c1ce8dc6732557c25893383f532dc/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 888/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/e9cb920e58f7456bde370aeafa6bfb/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_1_fastqc.zip 643/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/67c59af4614d82d3f4c4f50f34b607/aih-tih-sc-387c73-R1_A23WJ53LT4_1.bam_stat.txt 1512/aih-tih-sc-387c73-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/c4c745712f410afc1e24c8835e8a07/aih-tih-sc-560d56-R1_A23WJ53LT4_1.infer_experiment.txt 976/aih-tih-sc-560d56-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/ac457fca2b72d52f871edb0db95d51/aih-tih-sc-674b78-R1_A23WJ53LT4_1.fastp.html 173/aih-tih-sc-674b78-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/6c443e14b2b42811ae998b938a26af/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_trimmed_1_fastqc.zip 569/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/966df8a46db244a60b0bc4def248e9/aih-tih-sc-06a169-R1_A23WJ53LT4_1.read_distribution.txt 1281/aih-tih-sc-06a169-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/569783d5a1338ef0c37ff56f6c1381/aih-tih-sc-bec563-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1577/aih-tih-sc-bec563-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/721bc5acfc288e83e15735b07074d7/aih-tih-sc-284856-R1_A23WJ53LT4_1.md.bam.metrics 1831/aih-tih-sc-284856-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/9452a5676389be762272cc59eb642a/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 904/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/c0140a07023652ab3c3ca1b7e226ae/aih-tih-sc-606237-R1_A23WJ53LT4_1.attempt1.command.log 2114/aih-tih-sc-606237-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/1a955ab9a8c8bff22827236c8ccd0e/aih-tih-sc-ced210-R1_A23WJ53LT4_1.md.bam.metrics 1906/aih-tih-sc-ced210-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/530a20de7e5a0cf2a898077e669b31/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.pos.DupRate.xls 1643/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/32127c1edb61730e65a7ee48cacc87/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 514/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/684b484b7c2a7dbec378e6da9c31c9/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 573/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/cdfdce727806c938d916683f719924/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.bam_stat.txt 1472/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/69d0ec9ae21643dc925584515e7543/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1366/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/e4ce4226879354095b4d2c312e1775/aih-tih-sc-64cace-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1544/aih-tih-sc-64cace-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/7bdeee27175a5d233ebd9f0e0b1c3b/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.fastp.json 93/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/98d810aced433676da737f00b09a0a/aih-tih-sc-804b22-R1_A23WJ53LT4_1_kallisto_mqc.tsv 334/aih-tih-sc-804b22-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/f608c60daa873a09c5b11199d48d78/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.fastp.json 27/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/d86ff372f627a67bfe8ef1c4522d25/aih-tih-sc-2905df-R1_A23WJ53LT4_1_kallisto_mqc.tsv 357/aih-tih-sc-2905df-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/806b7ae3bb25bf363490d8df28acbc/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_2_fastqc.zip 694/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/575db424b46c3e2cdec06c7e127299/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.fastp.html 177/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/0e0fd9b2af6240b8e98464e7d5d80a/aih-tih-sc-965752-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2353/aih-tih-sc-965752-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/54a45d0c62b6a2a4065db5b095cabe/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.fastp.html 141/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/0ab63864cedbedb858b65b3bf6742b/aih-tih-sc-804b22-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2394/aih-tih-sc-804b22-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/c50242a3b8089f1639dbc5907f5ef9/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 429/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/46e06b095a6229b8bb79c5917f964d/aih-tih-sc-488877-R1_A23WJ53LT4_1.lc_extrap.txt 2161/aih-tih-sc-488877-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/e629adec8130227331cc32832fbc2b/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_preseq_mqc.tsv 2242/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/8cfde9ed7948d760967e8a648e54b6/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.read_distribution.txt 1345/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/da51df79ec2f93091a8eb7cb294f9e/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.bam_stat.txt 1476/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/a2a8c9049fed53e4ad89b320e35dd9/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.read_distribution.txt 1304/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/00c0cc37a8fed37ff973451a4091f7/aih-tih-sc-7de750-R1_A23WJ53LT4_1_1_fastqc.zip 663/aih-tih-sc-7de750-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/4afce32c0f64d1caceef265977db85/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.read_distribution.txt 1300/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/3fc0d6010e94edc8368394788cea8c/aih-tih-sc-387c73-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 952/aih-tih-sc-387c73-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/41a623c4cd58193066f49f22c67678/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1545/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/7ddc4ce31da5f8e6d36391524cec48/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.inner_distance_freq.txt 1126/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/0130bc4f61036a4b1d4ab47df9a1b0/aih-tih-sc-951f98-R1_A23WJ53LT4_1.read_distribution.txt 1323/aih-tih-sc-951f98-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/231be4d3eeaa04e04d537d5ef618f1/aih-tih-sc-951f98-R1_A23WJ53LT4_1.infer_experiment.txt 1047/aih-tih-sc-951f98-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/4e420a5f389e54ee0ed79db9cfba89/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 411/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/589bf60f2cdf8db17fd93fed47b60d/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 914/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/821197f2de73600d965acec85ecc15/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.md.bam.metrics 1887/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/e74702e17ec1fe88a821f7f0d3efe1/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1982/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/0e820ce98b3f5dbbfa1f419558b834/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1541/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/e031d1c5e52524ae8f7658cbcdaeea/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.attempt1.command.log 2090/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/b57abb1b7a262b7cd06fce97b4113b/aih-tih-sc-674b78-R1_A23WJ53LT4_1.lc_extrap.txt 2176/aih-tih-sc-674b78-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/020cf69042bb509a78dfb32c6a1e30/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.fastp.html 147/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/d4dba981a19cdb09428e9521bfeabe/aih-tih-sc-674b78-R1_A23WJ53LT4_1.bam_stat.txt 1508/aih-tih-sc-674b78-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/33defdd6251f1192fab233d4f757e8/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1547/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/ae7ed30717d58c370565777f4ae972/NTC_0001_0001_A23WJ53LT4_1.junction_annotation.log 1155/NTC_0001_0001_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/a9f198880ea1faee100357f3381182/aih-tih-sc-fee548-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1974/aih-tih-sc-fee548-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/d6e50dbc3fd2695b978e43c3ea941a/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.attempt1.command.log 2049/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/be0fd505e1a479ea1910feb19b57cd/aih-tih-sc-64cace-R1_A23WJ53LT4_1.fastp.html 104/aih-tih-sc-64cace-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/1a2d0ef63cff2681f86ffcdfd1d10f/aih-tih-sc-965752-R1_A23WJ53LT4_1.attempt1.command.log 2066/aih-tih-sc-965752-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/ac431d5b7e1c368063f329ce21f780/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.junction_annotation.log 1177/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/39f1e2fbc422b68615ccc2dd75393d/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1618/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/d2651e231711ee7e8b4249838bc886/aih-tih-sc-da460d-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 532/aih-tih-sc-da460d-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/537ac6614512416e66ede5abee3660/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_kallisto_mqc.tsv 301/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/be99b7ad39a4607f05b6436974ee9f/aih-tih-sc-7de750-R1_A23WJ53LT4_1.fastp.html 162/aih-tih-sc-7de750-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/ed528330804f2a48ee3ddb7403fe8b/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1559/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/c82f3abe66dde4df84f5b367dc575a/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 902/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/fdc02b2532378891379e988918503d/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.lc_extrap.txt 2127/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/a015d4c01e4dcfa3e47ff79f796064/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.fastp.json 97/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/73b2f6ec6a8b5424e1d07d6b49ecbe/aih-tih-sc-06a169-R1_A23WJ53LT4_1.fastp.html 130/aih-tih-sc-06a169-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/a3028b950e9cd81a9ff9e4ffcbd6a5/NTC_0001_0001_A23WJ53LT4_1.infer_experiment.txt 963/NTC_0001_0001_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/fd2d9f0111315a116bd8574a85a976/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1428/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/2e4790e46abe6cc4b0a4fb3053c1e1/aih-tih-sc-965752-R1_A23WJ53LT4_1.read_distribution.txt 1318/aih-tih-sc-965752-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/5c36837c638fc793025d7601003bd6/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 932/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/5ebae22eceded00676807ff45fa5e8/aih-tih-sc-674b78-R1_A23WJ53LT4_1.junction_annotation.log 1216/aih-tih-sc-674b78-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/d4472aa7fc8da8c818b3fc42fd2f35/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.log 197/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/b985bfa9c4daf5caadeb9138fc0737/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.bam_stat.txt 1485/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/c8edb2569307988f54ec0e45914151/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 576/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/9a8352d0498d99cd98a2bb88892c21/aih-tih-sc-7de750-R1_A23WJ53LT4_1.infer_experiment.txt 1010/aih-tih-sc-7de750-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/9e672080a1ca968c96f51cc7007f53/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.infer_experiment.txt 989/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/f4ecacafc7f94ce287dd3a60972f9a/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.fastp.json 76/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/2708af5041ee895a9de88466f98238/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_contamination_mqc.tsv 1762/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/f21ad9c2658404995010ff462dc9f3/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 948/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/fb3164164e6a529a0351350e6a1f11/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_kallisto_mqc.tsv 346/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/4e420a5f389e54ee0ed79db9cfba89/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 412/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/a225e280116a4a6571bba6a54f0776/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2314/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/52e88304e10c5a266043a5b0a950cc/aih-tih-sc-2905df-R1_A23WJ53LT4_1.log 261/aih-tih-sc-2905df-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/42394d707964b28ab81e19f6b744ac/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.junction_annotation.log 1249/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/1a4ff2dd941617452fb7e5b1459d9a/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_kallisto_mqc.tsv 380/aih-tih-sc-96af5b-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/7ced38e3d3c7fd10bc38c83a3d049f/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_2_fastqc.zip 704/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/1038afde5ece840688cfc26316768b/aih-tih-sc-7de750-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 471/aih-tih-sc-7de750-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/08b72564130859a41bbc46cfb0ba15/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_contamination_mqc.tsv 1785/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/89670b915ec96d3c5bb9f1a1b25d0a/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.md.bam.metrics 1868/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/569a4dc0356da0ca91a7e947773bc0/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.lc_extrap.txt 2130/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/e88c47953a7f0cd33d14ed88aae2c6/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 893/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/1ca2453eef417fb436a2fe9143adf1/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 946/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/3b5a5b2a1d3a79ec820ecb0a6d4616/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 518/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/2157f7b5bb4de3af16844966d32f25/aih-tih-sc-550807-R1_A23WJ53LT4_1.pos.DupRate.xls 1645/aih-tih-sc-550807-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/bfd40cbef426c89334abbc50e3be60/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_2_fastqc.zip 738/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/a1865300c5f36439c64be0af8d3ece/aih-tih-sc-2905df-R1_A23WJ53LT4_1_1_fastqc.zip 685/aih-tih-sc-2905df-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/426f0466fe7c57966580771096b4d2/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1607/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/562e93c1207292896e346e74d34843/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.log 255/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/ad9a12eeea53e121ba5f2d9927d47d/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1574/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/8068ec058956330507261d3bb17d90/aih-tih-sc-669302-R1_A23WJ53LT4_1.junction_annotation.log 1245/aih-tih-sc-669302-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/d1badebf70b110fa234bfe101654a3/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1991/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/424feb118d08b66e534d0f4419ef4c/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.inner_distance_freq.txt 1143/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/8cad5fff2e9235c57c074e6198aee0/aih-tih-sc-387c73-R1_A23WJ53LT4_1.read_distribution.txt 1322/aih-tih-sc-387c73-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/48335cec3f2e7de285e0e6dc46d37f/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.fastp.json 40/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/1ca2453eef417fb436a2fe9143adf1/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.Log.final.out 850/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/e8c1474049a11daf67f65e3e56bd61/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.junction_annotation.log 1181/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/c28c5e4044e04cf762542c0f5d0982/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1938/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/ff23f0cffd9ebfccfe7c19f4d386e7/aih-tih-sc-804b22-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1972/aih-tih-sc-804b22-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/77f94c9a71473248b25a84b8f8b9e1/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.infer_experiment.txt 982/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/dc7c7dcf274c2e9c06ecf9e3bac71c/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.attempt1.command.log 2026/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/a18cc1596d3395649c51d211c03c08/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.read_distribution.txt 1302/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/1cc93302c1a8c39ace7c6ac9140218/aih-tih-sc-560d56-R1_A23WJ53LT4_1_1_fastqc.zip 607/aih-tih-sc-560d56-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/7288cc822f373a3a4e267439c00bdc/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2017/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/f3642734e70ded5b693803b3569d94/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 483/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/3ad82e18bd2103fd26fba3b76e8888/aih-tih-sc-55b175-R1_A23WJ53LT4_1_2_fastqc.zip 724/aih-tih-sc-55b175-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/6512832672786a92922f817c4b6965/aih-tih-sc-835699-R1_A23WJ53LT4_1.attempt2.command.log 2105/aih-tih-sc-835699-R1_A23WJ53LT4_1.attempt2.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/fd12352907f006a97771db59f537a9/aih-tih-sc-669302-R1_A23WJ53LT4_1.log 245/aih-tih-sc-669302-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/4583009db9deb7403f4bbc5b247aed/aih-tih-sc-669302-R1_A23WJ53LT4_1.fastp.json 64/aih-tih-sc-669302-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/1dfd81f401772541264ef44e9f1aa4/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.inner_distance_freq.txt 1141/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/f41e399318d09584ae0a542060dbfc/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.fastp.json 25/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/67951495ac707134b3e59810f92bcc/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2008/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/ea555faabd7de887ecd5b4421da9cb/NTC_0001_0001_A23WJ53LT4_1.attempt1.command.log 2019/NTC_0001_0001_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/99161fa6e04f66825b6eeb12e07c4b/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_contamination_mqc.tsv 1810/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/d14c5a49a0abc4e767c294a8e0d016/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.junction_annotation.log 1220/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/dc9b9d9a9d4bf19aa71f83326af909/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 938/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/6360d4346f1957bc210211525957cc/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1980/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/e9394746a938f307c9fc81ced73b9c/aih-tih-sc-669302-R1_A23WJ53LT4_1.lc_extrap.txt 2197/aih-tih-sc-669302-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/b33ae01906f46b911964404e3469da/aih-tih-sc-550807-R1_A23WJ53LT4_1.inner_distance_freq.txt 1068/aih-tih-sc-550807-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/3545c17bc49620e1dd4f067b8baaba/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.lc_extrap.txt 2163/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/d6a8459a2ea8bf14e7d1b4b5e844a8/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.pos.DupRate.xls 1701/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/99db66b8e058f6b4334d11365bcfb2/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1955/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/416220f9e8000ef58c8dcb2e073bf2/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 459/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/a9a981aab05800b6fd70951e752aae/aih-tih-sc-fee548-R1_A23WJ53LT4_1.attempt1.command.log 2068/aih-tih-sc-fee548-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/99ac2a758bba3f9f8ee1ec109c3cd4/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1411/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/17cec7672451c45a0f99e86877d789/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_contamination_mqc.tsv 1775/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/b26b8187f95f8c00e160ae4345b45c/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_preseq_mqc.tsv 2288/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/37e04f238007c9a43b9dfffb9e58ca/NTC_0001_0001_A23WJ53LT4_1_seqtool_mqc.tsv 1923/NTC_0001_0001_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/af7de6dfb95e5313d7ed7cd0fc6726/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.bam_stat.txt 1469/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/8d7f7206c474813ce4844fc96c217e/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_contamination_mqc.tsv 1794/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/9846b35fb091b4eb7846d7c99476dd/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.pos.DupRate.xls 1703/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/7f513296e4cae15a38ed4e7dbabf01/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.read_distribution.txt 1269/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/1b0f2f4a2b998df0e97ead34e85a6f/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.read_distribution.txt 1319/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/5a84591659a58eeb6961ebda16be96/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.pos.DupRate.xls 1721/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/6bb1f2137dafa7d1b2fade3211d055/aih-tih-sc-da460d-R1_A23WJ53LT4_1.Log.final.out 827/aih-tih-sc-da460d-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/0b239dd204d228d2f9451d2da8e84a/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.read_distribution.txt 1340/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/0d4fb8131940d36fe438b0fd01cac0/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_2_fastqc.zip 646/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/bb8d993e7f25be14f0f5061a069950/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1631/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/71d018f4d02bc04846cb0b29e6fe41/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2352/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/a4d86913d10b5be87939670278a734/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.fastp.json 50/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4b/ce620aaad346f68f8244753fbf84e4/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.log 204/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/4598457c7d239f987b6f10ea4e8fff/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1950/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/a77fe5f7f855b3736da5d161dc996f/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.fastp.html 166/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/01b342622c3b2a9c996fa6d02ebe5a/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.read_distribution.txt 1267/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/d3771628a6dee57836d50e3f2e6a23/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_contamination_mqc.tsv 1819/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/c85c681a9c3d526c2cda0c6c043da5/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.read_distribution.txt 1270/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/e61d83655aef47eaba23fff70e8eab/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_contamination_mqc.tsv 1795/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/b5ddc248f203274dab7224f6179ef2/aih-tih-sc-da460d-R1_A23WJ53LT4_1.md.bam.metrics 1883/aih-tih-sc-da460d-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/406d99acc37de107507bb7adf487db/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2328/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/22/e05a4da231d87bfaafd935763a7902/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.inner_distance_freq.txt 1133/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/7bdeee27175a5d233ebd9f0e0b1c3b/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.fastp.html 189/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/169b7dfcd04e424fabe4b83403a7c2/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_1_fastqc.zip 599/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/f5b03375c22b8c82a4178cc1a4d788/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.Log.final.out 841/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/20785c06ccb4703d9b52ec7f07f1f5/aih-tih-sc-560d56-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1935/aih-tih-sc-560d56-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/79bb784ea295dc6ecbbfdd3c13a3ad/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.log 219/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/ec114c30c8701573036cdfa2579ba6/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1582/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/c8ab5a62ebb704fb6750167a90908c/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.junction_annotation.log 1184/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/6ed4efcc46d4582647023f02415785/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.fastp.json 39/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/589bf60f2cdf8db17fd93fed47b60d/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.Log.final.out 818/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/9dbb14498ec1ea185a51a2c6a41254/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.infer_experiment.txt 1014/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/a90cf0adae203c8bbdda224295c6a9/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.lc_extrap.txt 2185/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/c8edb2569307988f54ec0e45914151/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 575/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/17/29ce5f19a2e2eefcfc0247a31e14dc/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.md.bam.metrics 1836/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/8884d48b28ae3a27d875a8b82f616e/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.md.bam.metrics 1900/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/f4a043451b75b8228820836bc4caee/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.read_distribution.txt 1264/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/8a4cb8d2a06f70658047d34d984544/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.junctionSaturation_plot.r 1422/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/d667e94c3835ee2725e2a3a88ad580/aih-tih-sc-55b175-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1442/aih-tih-sc-55b175-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/adc23e129d562291bee7b894a39f16/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.pos.DupRate.xls 1700/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/bc3a232737b9a17e6b9d3033c50af5/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.Log.final.out 795/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/c362063fa0ecd107fafdc37477a2cd/aih-tih-sc-fee548-R1_A23WJ53LT4_1.infer_experiment.txt 1012/aih-tih-sc-fee548-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/9b52bb1bf31ba57eb0ca98f9039d2a/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1580/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/327edbaa365048a9a2f91f20f2494a/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.md.bam.metrics 1890/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/d26f51fd1387bcea5f824e8b8c20e0/aih-tih-sc-af602e-R1_A23WJ53LT4_1.attempt1.command.log 2112/aih-tih-sc-af602e-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/939e499247b6e71e87759ae36787c6/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1926/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/ea93bbfb496f2d30b61738b0ee22cc/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.pos.DupRate.xls 1637/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/3d008d40fb6fb703197e54662df718/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_contamination_mqc.tsv 1821/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/c5181cade5354ff947d44b02400d6e/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1931/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/0f8be5e36f003b5dd877ca3e3052fd/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.md.bam.metrics 1853/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/8b51642d7c7e6ac22380524d9a1364/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 525/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/fa2b003beae4d6dd38264c3e2e8242/aih-tih-sc-965752-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1969/aih-tih-sc-965752-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/c9c3230b08960ba59e5a51e0aaa3f8/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_kallisto_mqc.tsv 337/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/05e756666510dac9925093c59c410e/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1627/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/ce7d4d2ead07e903522aa5254266f5/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_2_fastqc.zip 606/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/d7cc93aa6ad48293a7dc924b8a2491/aih-tih-sc-606237-R1_A23WJ53LT4_1.junction_annotation.log 1242/aih-tih-sc-606237-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/b1aa8548a0e8136db10ecf32c4636e/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1932/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/44cb867857b234d34b18d910b45fb7/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1395/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/c4c56e27d893316521962c041cdcfb/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.attempt1.command.log 2098/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/684b484b7c2a7dbec378e6da9c31c9/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 574/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/f604e89586aba285dbbf71171d5981/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 955/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/ba58cfb9e4c4f9cc0864034759b07a/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.lc_extrap.txt 2140/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/02f0ffd4bf746b6d44cfa06a77372a/aih-tih-sc-64cace-R1_A23WJ53LT4_1.attempt1.command.log 2025/aih-tih-sc-64cace-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/0f1951112dfac24f522694b2b0ca18/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 899/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/dc7c7dcf274c2e9c06ecf9e3bac71c/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.lc_extrap.txt 2122/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/66bd50f5841b39516dfa6b97e15c3e/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.log 286/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/04d1c3181191b87a476c0734449379/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.inner_distance_freq.txt 1095/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/2e7e6cff6bff724ff46cf248d76054/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.log 284/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/3b7cd08097bfe28fb2ea25ece68417/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.read_distribution.txt 1280/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/a9133b959d783f6053e4ca9ca30fd2/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_2_fastqc.zip 758/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/de67fd2f0ca464dc95e173252fdc5b/aih-tih-sc-da460d-R1_A23WJ53LT4_1.inner_distance_freq.txt 1114/aih-tih-sc-da460d-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/ed9ac3af6b9af650457f55b11a12a0/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.lc_extrap.txt 2183/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/34d5601c7987e702a31c31f12de718/aih-tih-sc-331e97-R1_A23WJ53LT4_1.md.bam.metrics 1828/aih-tih-sc-331e97-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/cd80ec1c178d4697b51d5f359fabeb/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_contamination_mqc.tsv 1800/aih-tih-sc-693ffe-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/922114205cf01789eaad4a01e1f629/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2357/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/1da8644f58b33c488dd5c73b37f512/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.inner_distance_freq.txt 1128/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/759e9de4c1bc08d14cb1611c2507a0/aih-tih-sc-550807-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1357/aih-tih-sc-550807-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/3e22dc7682593205fe21dc6d98bb44/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1593/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/34ef33f4000856fe49e7cf873906f7/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.md.bam.metrics 1907/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/7480ddc800bd14bfbefb78f907a2d1/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_2_fastqc.zip 722/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/c4a20de5962c481a353726aeef71be/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_1_fastqc.zip 735/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/3b5a5b2a1d3a79ec820ecb0a6d4616/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 517/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/6741be33027fe73bccd860396732a1/aih-tih-sc-06a169-R1_A23WJ53LT4_1.attempt1.command.log 2055/aih-tih-sc-06a169-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/0efbacf3b319f2859571277ced775e/NTC_0001_0001_A23WJ53LT4_1.fastp.html 99/NTC_0001_0001_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/447ead814205546a81fcceb77652d2/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_1_fastqc.zip 725/aih-tih-sc-9faac1-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/672c6ce5be972b4bafb4fc7aa9173a/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.log 227/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/da7e7d2c72b6044981dfba793785ac/aih-tih-sc-58b830-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2337/aih-tih-sc-58b830-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/35d9ec15624610a4ac34005d0e4161/aih-tih-sc-387c73-R1_A23WJ53LT4_1.log 240/aih-tih-sc-387c73-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/abe1998fecd1f316250089397ef3e1/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.fastp.html 167/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/bf2758dc8f08fe79fac0cd2a520abd/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.inner_distance_freq.txt 1149/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/9f2013e2eac2cb1066a1534d6aa6a4/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.junction_annotation.log 1165/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/a7fab883b1651829c924db8f29ae91/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 945/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/c2389cd3a034e4846ecefdd4bffc33/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 403/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/81e3020acc642a7f3cdaeb6a356028/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_preseq_mqc.tsv 2234/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/d944a2a6b46108d725bfa177337ec0/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.pos.DupRate.xls 1725/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/c3df38a045023ee11f5402e5045738/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 500/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/9d498719385e981aa231c570c0dd72/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.pos.DupRate.xls 1726/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/f3642734e70ded5b693803b3569d94/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 484/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/1ec0851e9314c78a474946ba921d70/aih-tih-sc-ced210-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1425/aih-tih-sc-ced210-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/9639c2ebfa136d36736dd7d2cca8cc/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.bam_stat.txt 1479/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/85614b380c529354f6e1a6090ab46b/aih-tih-sc-674b78-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2380/aih-tih-sc-674b78-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/b3d766e63b1a5876b82ede13076f3d/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 961/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/b9588f7b439b4e42bc27fa12b82f79/aih-tih-sc-804b22-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 925/aih-tih-sc-804b22-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/e275092a007a6668af94bf9276a687/aih-tih-sc-fee548-R1_A23WJ53LT4_1.bam_stat.txt 1503/aih-tih-sc-fee548-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/0287bff5ed5ff12374602b6e89f02a/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_seqtool_mqc.tsv 2002/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/dc4efb6e94472a2afd163b7db51205/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 944/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/93ac347129d8eb33cf95986d04127f/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1963/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/fdc02b2532378891379e988918503d/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.attempt1.command.log 2031/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/cc4310087341f5f6ea60c89bb73dc5/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_kallisto_mqc.tsv 312/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/a5f40d0623243083283fb0aa20f1db/aih-tih-sc-af602e-R1_A23WJ53LT4_1.Log.final.out 864/aih-tih-sc-af602e-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/6c97b7d71f80c541c0b4f91eacca65/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.infer_experiment.txt 987/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/0a1552fb0a6c12ba0be2fb110c6fbe/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1438/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/1038afde5ece840688cfc26316768b/aih-tih-sc-7de750-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 472/aih-tih-sc-7de750-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/c60a00836a04d54e7cd1ccd09edb70/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.read_distribution.txt 1308/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/6c402ba6d9977a1a90921906656391/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1588/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/7236a9c0eda5ba041c2db2724e84fb/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.fastp.json 88/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/bb997d4c4d3fa419ec00f8ca73d30b/aih-tih-sc-284856-R1_A23WJ53LT4_1_2_fastqc.zip 588/aih-tih-sc-284856-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/c5c2dd6d86b12c407cb2593e2297af/aih-tih-sc-da460d-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2351/aih-tih-sc-da460d-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/84f0fa997af7197ac53ff949b9a33f/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.attempt1.command.log 2059/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/4a307399c19d7fbeaa460416f3285c/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2395/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/22db7013b37c82ef89370680f03907/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_contamination_mqc.tsv 1767/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/7538f72499d9ede5ff047c1c9e32a9/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.infer_experiment.txt 1024/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/9a6e46d2bd1cc4969406fe54825ac6/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.pos.DupRate.xls 1706/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/1109cf6321584f269d336f0e057a4a/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.pos.DupRate.xls 1670/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/cb92d4eca6f586cbadc7809437f2b8/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.log 278/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/76b483d31270bc6f8b5d15e1846f31/.command.sh .command.sh")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/6238788c7a795fd52e389029c45f18/aih-tih-sc-408cca-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1375/aih-tih-sc-408cca-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/72ebb417f67c50038c93331847cc11/aih-tih-sc-bec563-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 916/aih-tih-sc-bec563-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/b2460ef2890c7a9511c9e5a8a3e17e/aih-tih-sc-387c73-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 552/aih-tih-sc-387c73-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/146005c39dbdadc397c7c134c89454/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.read_distribution.txt 1257/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/6ad7783622632aa4c6ff202de33ba9/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_contamination_mqc.tsv 1807/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/655b10740e1c28083f33cead12d66f/aih-tih-sc-408cca-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1563/aih-tih-sc-408cca-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/c49dc9be9304b3b0144d4032b62cde/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.bam_stat.txt 1477/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/4a6e053f9d37dd36ca8c1919421ed9/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.junction_annotation.log 1176/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/59a4308ad94ce3f6750f86f29bb1ba/aih-tih-sc-06a169-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1569/aih-tih-sc-06a169-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/70723bba0a19c2d50f7844844b2977/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.junction_annotation.log 1236/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/b6a4828673d27083c40aedbe59b78a/aih-tih-sc-408cca-R1_A23WJ53LT4_1.inner_distance_freq.txt 1087/aih-tih-sc-408cca-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/e00fb722bd8a15a02a4dd5f224abd4/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.md.bam.metrics 1870/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/37aea75a0314c8503274f1132b3d8e/aih-tih-sc-284856-R1_A23WJ53LT4_1.attempt1.command.log 2023/aih-tih-sc-284856-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/bc6585cdf4b71ea26dbf51203e3ed8/aih-tih-sc-951f98-R1_A23WJ53LT4_1.pos.DupRate.xls 1720/aih-tih-sc-951f98-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/780ed646f1100ad62c320209d6b7d2/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_preseq_mqc.tsv 2236/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/48335cec3f2e7de285e0e6dc46d37f/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.fastp.html 136/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/fd265311a24be16b8e9f1860c6659c/aih-tih-sc-7de750-R1_A23WJ53LT4_1_contamination_mqc.tsv 1797/aih-tih-sc-7de750-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/1ab317a7f7f3c8b50aef586effc13c/aih-tih-sc-804b22-R1_A23WJ53LT4_1.fastp.html 163/aih-tih-sc-804b22-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/0f3e685c770ef28909337356646832/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.fastp.html 157/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/95f75d432016a340f03eecf291e968/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.log 218/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/8b00ab85087394752b94b96c939e83/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_contamination_mqc.tsv 1791/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/c4e1b411551370abdc64d39dcffec9/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.infer_experiment.txt 1033/aih-tih-sc-693ffe-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/e75cf3a374b9b56c061215610df307/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1966/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/fd37c4d3f0730aa8a51ab4b07d4e25/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.read_distribution.txt 1268/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/60b3255685a49390dd4365e00deeae/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.log 222/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/2dc589784219925419d3a0b5874df1/aih-tih-sc-550807-R1_A23WJ53LT4_1.junction_annotation.log 1170/aih-tih-sc-550807-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b9f697e0fc8e89064c0e9b71a4e2d0/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_preseq_mqc.tsv 2299/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/f78c142a39d661f051a4c08a49bfc9/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2340/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/6dbf508d6092c75d1fcb88078f82af/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.log 202/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/1551c11dc194076a5aecead03a3a26/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.md.bam.metrics 1894/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/9e6af36c120062ad233fe07c5c0bb5/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.ReadsPerGene.out.tab 943/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/286805d3e91b2cc40c767361a26b72/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 418/aih-tih-sc-2ca847-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/cf21c6816e29c7c903cfd771025fc1/aih-tih-sc-331e97-R1_A23WJ53LT4_1_1_fastqc.zip 581/aih-tih-sc-331e97-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/34/d7c614dd2d4101e57dd2d00e4cb10e/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.fastp.json 54/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/c2389cd3a034e4846ecefdd4bffc33/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 404/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/b9d8555fbd0bde2b033d4f25821998/NTC_0001_0001_A23WJ53LT4_1_contamination_mqc.tsv 1731/NTC_0001_0001_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/8b6b4d2d0aff6bfe1a11c1ed2b2d0f/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.infer_experiment.txt 995/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/c2d09f3b8fd5795e757ae136bd80f6/aih-tih-sc-488877-R1_A23WJ53LT4_1.pos.DupRate.xls 1677/aih-tih-sc-488877-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/79915faf78ded27bb883d456da5363/aih-tih-sc-560d56-R1_A23WJ53LT4_1.lc_extrap.txt 2136/aih-tih-sc-560d56-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/e3a6a7e2fc920ddd8f29b724318957/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.md.bam.metrics 1899/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/88202882f6d011617bed4a0126198c/NTC_0001_0001_A23WJ53LT4_1.Log.final.out 771/NTC_0001_0001_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/c282fcef4dbd16aa61fd1143505c44/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.bam_stat.txt 1452/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/bdff4bb7563ae9961a2c9dbfe7ce88/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_1_fastqc.zip 641/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/e7ef59b8eec60028fba564ab4b6589/aih-tih-sc-669302-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 497/aih-tih-sc-669302-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/9d6c4e17ffe27b40ad5edbfc68e085/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1990/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/ac7a58c823ef2481485d599a4f6989/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.inner_distance_freq.txt 1066/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/43d0eeeb57f6e794c1328833b6aa50/aih-tih-sc-331e97-R1_A23WJ53LT4_1.Log.final.out 772/aih-tih-sc-331e97-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/ef320fa5bc07b0eccef21d41286bad/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 476/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/9446de7408b0a778467528f34be9ec/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Log.final.out 814/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/b0d26afeee259f50dc33446323abf6/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.junction_annotation.log 1204/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/f931e05285503e9638ff331a16a214/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_kallisto_mqc.tsv 297/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/e0b5d5ffc3c0593da07be0ce9e871b/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 433/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/c7832379c12779d2250daa6d1f1e49/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.attempt1.command.log 2107/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/b8563f8af45118ca7ab1530dc4abc8/aih-tih-sc-669302-R1_A23WJ53LT4_1.infer_experiment.txt 1051/aih-tih-sc-669302-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/e5f43c7366d411ca021fda4dc77946/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.inner_distance_freq.txt 1113/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/8b51642d7c7e6ac22380524d9a1364/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 526/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/86844d5b0fc2d5fd5f0115e733772f/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_1_fastqc.zip 639/aih-tih-sc-9ab390-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/76b5e363fb602445bdb53a81e06d84/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_1_fastqc.zip 633/aih-tih-sc-19e09e-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/2f2c253397d482100202500b7e4d96/aih-tih-sc-331e97-R1_A23WJ53LT4_1.bam_stat.txt 1444/aih-tih-sc-331e97-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/8455bab5b4ca627776fcc7f36c637e/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.fastp.html 154/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/41c7ed0149538719ea4376c4708d40/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_1_fastqc.zip 689/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/7c06b7eb34f7bba8f7de7e0ef6b1f1/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.junction_annotation.log 1163/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/4416d81cd168f0d19e2610cbd3735b/aih-tih-sc-804b22-R1_A23WJ53LT4_1_1_fastqc.zip 651/aih-tih-sc-804b22-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/f21ad9c2658404995010ff462dc9f3/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.Log.final.out 852/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/39a1ad77301feec298314f17698c57/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1564/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/18c4388a6aec93f03dcbace75b6625/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.pos.DupRate.xls 1713/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/7236a9c0eda5ba041c2db2724e84fb/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.fastp.html 184/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/34edc0d564c2d57a6eb1c05e3c1616/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.junction_annotation.log 1226/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/2d7e120252c7ec04fdb2db418c3958/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_2_fastqc.zip 648/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/f69a821ee8e6edcbd4a191680c6e67/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1377/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/7a283cb1ec9d5d7441477d8bd6041d/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.junction_annotation.log 1191/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/cf5482fd8ed5b54c96088d8d2e71c4/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.read_distribution.txt 1253/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/dee3f3edb051f4868b3c06dc5e8ea1/aih-tih-sc-488877-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1576/aih-tih-sc-488877-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/6108e9f55760731928c81b1244a6fa/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2398/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/4432c227899672c1e95fe570f2380c/aih-tih-sc-af602e-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 508/aih-tih-sc-af602e-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/54a45d0c62b6a2a4065db5b095cabe/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.fastp.json 45/aih-tih-sc-4c132f-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/fa712364d58c4a598e92e9c0acf044/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_2_fastqc.zip 760/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/9a48ba881955ca43f4a8ca2a636480/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1571/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/6baa113fee771f5ec88bededce68da/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1581/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/a5baf3e8520554ba40fe3fcfbe0328/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.Log.final.out 811/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/64caec28410fadd5f9c66710cf1892/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.pos.DupRate.xls 1674/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/56b9fce083efb444662aad349d5800/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.log 256/aih-tih-sc-6734d6-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/501dee80462a1718bd75a7c9bdea82/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.infer_experiment.txt 970/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/b0b8eaba0fd8ca89f2c21d5d250a6f/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.inner_distance_freq.txt 1103/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/f960b50d1358ea96112fcabc7bee61/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_contamination_mqc.tsv 1801/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/9452a5676389be762272cc59eb642a/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.Log.final.out 808/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/be80240eaae3653a90c01cd895a5e4/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_1_fastqc.zip 713/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/8881a0700e44c159c9bd8b45f81504/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.inner_distance_freq.txt 1124/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/c7832379c12779d2250daa6d1f1e49/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.lc_extrap.txt 2203/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/44c7601b23a86edb29cb500e6ce2aa/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.inner_distance_freq.txt 1121/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/c8fe365eeec1cde37fda956d659481/aih-tih-sc-284856-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1543/aih-tih-sc-284856-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/f0ad5e5e3c43922a5e27c283154aee/aih-tih-sc-488877-R1_A23WJ53LT4_1.read_distribution.txt 1293/aih-tih-sc-488877-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/6bb1a9665fbecfc8f10c49d5acfcda/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.bam_stat.txt 1490/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/f04039fbb73eb2b2631faddd5e9871/aih-tih-sc-58b830-R1_A23WJ53LT4_1.bam_stat.txt 1471/aih-tih-sc-58b830-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/4d33f757dabe666b7d448e305a15df/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_kallisto_mqc.tsv 294/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/0142956f3e51c31b28181255ff2053/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.attempt1.command.log 2091/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/5acb1f9c4adc969d11792d01dd8edf/NTC_0001_0001_A23WJ53LT4_1_2_fastqc.zip 580/NTC_0001_0001_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/641ef69ae9439b8283662a135133be/aih-tih-sc-af602e-R1_A23WJ53LT4_1.junction_annotation.log 1248/aih-tih-sc-af602e-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/836d52023a2a8c2723913f034529b4/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_contamination_mqc.tsv 1799/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/5dc317584a9ad62a98ef50c41f6a0b/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_kallisto_mqc.tsv 378/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/c5c6ec3b4ced32b6e2232ad2d8c614/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 884/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/d8def58e46616d9f2a6342c5a12a5c/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.Log.final.out 789/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/b116d65a7e7acc01077b7f792e1552/aih-tih-sc-408cca-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1951/aih-tih-sc-408cca-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/728855942d437e169b55b05735cee9/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.md.bam.metrics 1871/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/cccdd0aa0b6e455d70df489715588f/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.pos.DupRate.xls 1650/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/7af8e0395683418389f274c543d85b/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2327/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/4048f04ed0134f9cd674a403988943/aih-tih-sc-58b830-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1948/aih-tih-sc-58b830-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/e108bbcf12bbb4420e454e1f3c3c2d/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.fastp.json 48/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/7e53e54f0fabedfffaf331b95fd38a/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_2_fastqc.zip 728/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/da10f4ae08f5dabb93e6c7fe5305a0/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_1_fastqc.zip 697/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/a4571a1e05a935692cc813104c7a0a/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.junction_annotation.log 1171/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/bc3df1f9072962f5dd59de1cc0916f/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_kallisto_mqc.tsv 362/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/cac06d916095ec356addc7487e9033/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 426/aih-tih-sc-d45d48-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/cac2439f4a0478472a0f94f812a836/aih-tih-sc-7de750-R1_A23WJ53LT4_1_preseq_mqc.tsv 2256/aih-tih-sc-7de750-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/e137ce8a21e3f011d055aa5f7ca878/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.attempt1.command.log 2041/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/02fa0edf46ace3f88ee8e92cc42520/aih-tih-sc-408cca-R1_A23WJ53LT4_1.junction_annotation.log 1192/aih-tih-sc-408cca-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/a4a1876779f5a897cb7035a4c2bd85/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 933/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/a1fbbb3d3a0ba4e0f2bffb5b68f608/aih-tih-sc-55b175-R1_A23WJ53LT4_1.read_distribution.txt 1346/aih-tih-sc-55b175-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/eb5ac62b8ac90d0edd11785b2709c6/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 919/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/8ff003fa8eb4f640fa2b1a45756407/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.log 272/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/80d0bb62f164d77b341453942c7cd7/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2364/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/5d5f065d333d9bd2fbb079076a642c/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_preseq_mqc.tsv 2245/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/8e5c1ce2dfd5f615ad3b1b3212b6a8/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 421/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/44de7e573f40b8b55ac3ab6d5fb4a7/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 577/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/3bdac61ab6dcd014e2b146019244c8/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1374/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/634be424d910e31b5cd0f516a38eb6/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 886/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/fb00e3f9a18b27d6574395197bc7fb/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 420/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/d17508d323d522741051df8c0cc7d9/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1406/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/4068685e8f90629c19907235a91b39/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.fastp.html 174/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/8a1e95a4c24410ba2797685f6e5073/aih-tih-sc-674b78-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1401/aih-tih-sc-674b78-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/f74a3489f2b9259615a2eec482ae13/aih-tih-sc-55b175-R1_A23WJ53LT4_1.fastp.html 158/aih-tih-sc-55b175-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/e416ab2d2812d05792fda8de1788c2/aih-tih-sc-674b78-R1_A23WJ53LT4_1_kallisto_mqc.tsv 360/aih-tih-sc-674b78-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/abbc3f01c36947515cc7903111278e/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1613/aih-tih-sc-4e749e-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/98fff0337181c67e09cf9620c79409/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1364/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/10/7ac715c2c29d13a27d818117e12e78/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1998/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/c4e8d3007047551cbff26c8536938e/NTC_0001_0001_A23WJ53LT4_1_preseq_mqc.tsv 2211/NTC_0001_0001_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/391e55b62c5e9e0c6afe4618b6919c/aih-tih-sc-da460d-R1_A23WJ53LT4_1.read_distribution.txt 1317/aih-tih-sc-da460d-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/27/381868707cd6e6d2afd9d557242b09/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.lc_extrap.txt 2171/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/1e46e78b5e2b0541daa3c9b9a7d01a/aih-tih-sc-951f98-R1_A23WJ53LT4_1.lc_extrap.txt 2190/aih-tih-sc-951f98-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/c26848a8471eb0a5b3b1ecdbec45d4/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.pos.DupRate.xls 1707/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/0850eac36e421dc7361df437814600/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.read_distribution.txt 1274/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/fed735c27bbbf13a20011a37089fb7/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.pos.DupRate.xls 1704/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/2fddd1c76489bb0ffe2ea71a3f1c61/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1620/aih-tih-sc-b107e7-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/25e9ae044b475aa05c16ec444f8b82/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.fastp.html 139/aih-tih-sc-38a0a3-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/1989ceb7309e2220142e308889b3b6/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.inner_distance_freq.txt 1075/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/f3424d0435ed5a231cdc42dbda7042/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.fastp.json 69/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/c795d020fffab25190006d24ad37dc/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 935/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/eb5ac62b8ac90d0edd11785b2709c6/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.Log.final.out 823/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/6dee8e1e24f926231896d4c06829ca/aih-tih-sc-ced210-R1_A23WJ53LT4_1.lc_extrap.txt 2207/aih-tih-sc-ced210-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/89899249823790dfba07e039fbdb20/aih-tih-sc-da460d-R1_A23WJ53LT4_1.log 251/aih-tih-sc-da460d-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/07ccde272b14ed1ecfb2260392324f/aih-tih-sc-06a169-R1_A23WJ53LT4_1_kallisto_mqc.tsv 331/aih-tih-sc-06a169-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/022fe8a6cfb1810aa2a03b590f4d4a/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_contamination_mqc.tsv 1815/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/569a4dc0356da0ca91a7e947773bc0/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.attempt1.command.log 2034/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/b556934270c7a92bcfd648f0730422/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1565/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/bdfb0e9df5bddc46d7c4e6d383070d/aih-tih-sc-804b22-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 473/aih-tih-sc-804b22-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/6f28117f59f968c0f79884054fffca/aih-tih-sc-06a169-R1_A23WJ53LT4_1_1_fastqc.zip 655/aih-tih-sc-06a169-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ec/484c8fcbd28bbd769d4661f0269681/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_2_fastqc.zip 756/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/52539c8aed8eb6218195481f75b94c/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 439/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/7ea0f8f076235c7fee20fc4ed63f90/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1370/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/3950b14bb2cad219f82d1b0214d1cc/aih-tih-sc-835699-R1_A23WJ53LT4_1.log 249/aih-tih-sc-835699-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/eb096fd629bb2ffade70771fc4e45a/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_preseq_mqc.tsv 2219/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/53bf2c221526f95e4733ee555d6cf7/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.infer_experiment.txt 1003/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/3ae3641cd99811d179c8835c7d9975/aih-tih-sc-06a169-R1_A23WJ53LT4_1.log 235/aih-tih-sc-06a169-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/1c76949a15d99ec3439a04b1fd5c98/aih-tih-sc-58b830-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1567/aih-tih-sc-58b830-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/70b127ddcf762deed00f6f86b339d8/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_trimmed_2_fastqc.zip 550/FFPE_HD789_01_RNA_13_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/7d8c7d7498e671fea99018b6357e12/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.read_distribution.txt 1282/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/9c1ce8dc6732557c25893383f532dc/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.Log.final.out 792/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/3573001b9d80c76995cda41da653d3/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.pos.DupRate.xls 1729/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/f8d0d74a4bb1c8ea1b49755bf3f874/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.Log.final.out 786/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/803e79a7257a004071cef411d78d87/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1587/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/273c0682ea4302e7fcaee368b4de06/aih-tih-sc-fee548-R1_A23WJ53LT4_1.fastp.html 169/aih-tih-sc-fee548-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/e58e82d8e48fc957924466587e97d8/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2374/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/b74a9572a51f13cdd513ecb3ea7d7a/aih-tih-sc-af602e-R1_A23WJ53LT4_1_1_fastqc.zip 705/aih-tih-sc-af602e-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/77ff657a587d54a150d10f387f6e67/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 521/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/a0abf526288391f064df6ba176038a/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1409/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/cd2fada64872fa6fa493d100ac9912/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.md.bam.metrics 1902/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/a42e2bd0043ef605ee8fbda2f133ac/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_1_fastqc.zip 699/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/1d4f061ea4c4f598f69a056c9f9804/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_contamination_mqc.tsv 1743/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/90c09326d7ca54c56ef18f7fb752dd/NTC_0001_0001_A23WJ53LT4_1.inner_distance_freq.txt 1059/NTC_0001_0001_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/a1d66362061a82fd080aba5e6c5a72/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2324/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/c3473f64c7fd609b493ddffeb4c889/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_kallisto_mqc.tsv 318/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/df311d7f77345f1256e78acb2d63c4/aih-tih-sc-669302-R1_A23WJ53LT4_1.Log.final.out 860/aih-tih-sc-669302-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/876b94b593dc10455617481768a49e/aih-tih-sc-bec563-R1_A23WJ53LT4_1.infer_experiment.txt 1007/aih-tih-sc-bec563-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/3047a824e8c292f8c51ac243333bc6/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_preseq_mqc.tsv 2248/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/76d11b934fd61eba86d42c5694801f/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2344/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/276b9a4af93fe0dd411fd4caa788d5/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.inner_distance_freq.txt 1092/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/2e9c38aaf3c896ea22de8f013ca884/aih-tih-sc-674b78-R1_A23WJ53LT4_1.Log.final.out 835/aih-tih-sc-674b78-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/d0ab693e79f12e14da955fef2f1127/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.infer_experiment.txt 975/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/c24f50152f053f5e44f8793133436e/aih-tih-sc-58b830-R1_A23WJ53LT4_1.attempt1.command.log 2039/aih-tih-sc-58b830-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/2ebfe6fbd205a39a751dbf01c37fb2/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.fastp.json 82/aih-tih-sc-98fc22-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/7cbaad17e369e43d21744dfefb3fff/aih-tih-sc-64cace-R1_A23WJ53LT4_1.bam_stat.txt 1448/aih-tih-sc-64cace-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-5ae5f7b1-ce8a-4a12-9374-820c751df9c5/2d/6a8506db9fa0a2e2df2d5d02e025a1/multiqc_config.yml multiqc_config.yml")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/146ef95942121298ef00409fedc22a/aih-tih-sc-ced210-R1_A23WJ53LT4_1_1_fastqc.zip 679/aih-tih-sc-ced210-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/2a895f1d4431c5026f97e9a50fd64c/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.log 232/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/0d9c832b3f766578ca632a5571f704/aih-tih-sc-835699-R1_A23WJ53LT4_1_1_fastqc.zip 753/aih-tih-sc-835699-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/7a0f6e1d6ecf977f9c628c0776c22d/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.bam_stat.txt 1492/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/2d81b0e072f262a2852c9c80d57ffc/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.log 250/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/a3fea6cc2537cdcc0f3e29c650e266/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_contamination_mqc.tsv 1760/aih-tih-sc-1351d2-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/a2a6fd79c5b34954c6dc41952e44d7/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.md.bam.metrics 1858/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/924fef86d926b42807b323bc281d6a/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 564/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/0e1675fbe29487400729342645c414/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.Log.final.out 831/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/77ff657a587d54a150d10f387f6e67/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 522/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/5dab0f97d4317afe3f2ad14263957c/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_2_fastqc.zip 746/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/09892b8495bf9305e7158a58aaac55/aih-tih-sc-da460d-R1_A23WJ53LT4_1.fastp.html 191/aih-tih-sc-da460d-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/73ebe6b28cd9f12f59765621def3cd/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.Log.final.out 851/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/4f51c609b6f495e11f734dd8175042/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.attempt1.command.log 2086/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5f/f4fc9cfdc9abd77b43dec13c342025/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.read_distribution.txt 1310/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/575db424b46c3e2cdec06c7e127299/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.fastp.json 81/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/43c796e110bfab5220c82c2e6e1af2/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.fastp.html 101/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/9df5254248cf1a5a28299be9462fff/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.fastp.html 156/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/218bad7987d59f101df5905baa8dfd/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.bam_stat.txt 1474/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/3c96fb165657f91c0d2329669da8f6/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.md.bam.metrics 1849/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bc/409fbb04c58d70bda5845a66db3a05/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 539/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/91f505d3e6dae82503475eedd06311/aih-tih-sc-387c73-R1_A23WJ53LT4_1.attempt1.command.log 2093/aih-tih-sc-387c73-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/bf9071be9e8b9fbafd81f30d7a1819/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.bam_stat.txt 1524/aih-tih-sc-b107e7-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/03b0630acd03eac604442996896bf8/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.attempt1.command.log 2035/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/33/a3feb0c9fe065177406f405c4ed61e/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 431/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/e0a95a8f26340032cc41fd9ebe67d0/aih-tih-sc-606237-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 936/aih-tih-sc-606237-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/2e3d4fc85033c351859cafa92e7f7a/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_preseq_mqc.tsv 2279/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/bfe275ba8d6fb421ad7333f9195707/aih-tih-sc-ced210-R1_A23WJ53LT4_1.Log.final.out 855/aih-tih-sc-ced210-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/8330cd794b8c770fa94d08e9782627/aih-tih-sc-550807-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 876/aih-tih-sc-550807-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/e5d3b6768acc3c5b82d530fdfcad5b/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1989/aih-tih-sc-9be8d4-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/3035577217247f2945a14fb473004e/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.bam_stat.txt 1456/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/683f1e0ea9ce72867dcf9cbbf1a53d/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.bam_stat.txt 1518/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/cb691024f7c87afbd08986a0c158fd/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.md.bam.metrics 1851/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/e07afa3d31f0daa4cdd9ef1f93525c/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.lc_extrap.txt 2147/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/07a162ed922e611318396795da887f/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.lc_extrap.txt 2125/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/5d59a0e2ee205e9703476475da95ae/aih-tih-sc-58b830-R1_A23WJ53LT4_1.inner_distance_freq.txt 1084/aih-tih-sc-58b830-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/62f0dba6ba2acf6038d5aa4a673db1/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.pos.DupRate.xls 1711/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/bb433d642e5a947d75c1f467d994de/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_preseq_mqc.tsv 2278/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/b5a2445c96f2f774c526539a252057/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.Log.final.out 805/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/7a2e63694cc5e0a197806a321ad890/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.log 276/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8c/229e6fa96608d8cf1222a42f520b5a/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 409/aih-tih-sc-5d3207-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/7bb587c7ab70b6634581f1f4465b10/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.junctionSaturation_plot.r 1429/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/ac0898760b67c743e4771421e46995/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.Log.final.out 773/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/41b4be7f35b06cae0ff97f432d57fb/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2378/aih-tih-sc-3a9c1f-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/8e5c1ce2dfd5f615ad3b1b3212b6a8/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 422/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/881e2ec1681d9a50219feb9d51aed1/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_1_fastqc.zip 659/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/4388b3b81e5b55223d1810eb3362a5/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2389/FFPE_V4_0002_RNA_0006_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/d5c152c4b589ebc2d214b834ec74c3/aih-tih-sc-58b830-R1_A23WJ53LT4_1.fastp.html 124/aih-tih-sc-58b830-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/69ec14c8c9254237d62165d229b3ed/aih-tih-sc-387c73-R1_A23WJ53LT4_1_kallisto_mqc.tsv 336/aih-tih-sc-387c73-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/a5823cca632c8fc068f3cdf362cfff/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1586/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/db39e24248ec810f53c87173858600/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_contamination_mqc.tsv 1745/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/4c8ccf51e211adbdc77739db9f99bf/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.fastp.html 168/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/9e6af36c120062ad233fe07c5c0bb5/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.Log.final.out 847/FFPE_HD789_01_RNA_13_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/e4d62c91852eb8f3d9d69ca8ffb180/aih-tih-sc-835699-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1439/aih-tih-sc-835699-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/63c42193529f7248a95323bf81ad54/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1575/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/55bafb1d20a6afaba3ed2398497c54/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.pos.DupRate.xls 1672/aih-tih-sc-12b72b-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/58f68ec925a7f3f06e26645056b282/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.lc_extrap.txt 2120/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/1d68c263d5b14d7f169aa165bb3c8f/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2331/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b3/6f5bb20b937327b7044cf1ecce6fce/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.read_distribution.txt 1289/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/0deb994ebfdefa91d11f2528c64841/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.fastp.json 21/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/18/3fb3a2e41be915d71406a654c6c21a/aih-tih-sc-ced210-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv 1605/aih-tih-sc-ced210-R1_A23WJ53LT4_1_rseqc_extra_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/81ccc52351481089ad85a333cc6b5a/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.md.bam.metrics 1920/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/1f169472c242020c5ac6d4355e81e7/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.junction_annotation.log 1172/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/7cda81fb9774f5a88b122122f00de7/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_kallisto_mqc.tsv 328/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/4c14398446095e934f6d6048bd6ebc/aih-tih-sc-06a169-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1380/aih-tih-sc-06a169-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/d7fa04a520f30a035c3b219283ff52/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_contamination_mqc.tsv 1789/aih-tih-sc-3cac57-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/fae8768170bc63c5d17ec0edbf6122/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_1_fastqc.zip 617/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/869964e1070d6d6862976ad2205614/aih-tih-sc-951f98-R1_A23WJ53LT4_1.bam_stat.txt 1534/aih-tih-sc-951f98-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/68b4f19a1e4c1566e11ecd8c753711/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.fastp.json 11/aih-tih-sc-cf89e7-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/e43f0ab34ed63df78b4db276a5479d/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.md.bam.metrics 1843/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/e0b5d5ffc3c0593da07be0ce9e871b/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 434/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/8de3077934443db4153d97b5dcf209/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.pos.DupRate.xls 1665/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/df7ba46d06eedb882995a8198ccb10/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1970/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/5e9ac8d7db7b59bdb9142bc84b6464/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_1_fastqc.zip 715/aih-tih-sc-2a8dd7-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/7e60b1c870de915dfc831b4ccd32f8/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.log 211/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/ecd2d3350a62c90d2de110ed2873df/aih-tih-sc-674b78-R1_A23WJ53LT4_1.inner_distance_freq.txt 1119/aih-tih-sc-674b78-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/20d4e81d23f77a9315bbc6af13e067/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_kallisto_mqc.tsv 308/aih-tih-sc-6064dc-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/e6c23a0a28d75d6dd3fa86555ec14e/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_2_fastqc.zip 598/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/ba58cfb9e4c4f9cc0864034759b07a/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.attempt1.command.log 2044/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/0169ea696f8960a2ee5a9d65e67a72/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1930/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/85656f667fea716c8a129160c7a78e/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_2_fastqc.zip 654/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/01e6820dfb274c334be3c7cf472670/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_2_fastqc.zip 610/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/e3de02e3b5a53b9fd12864a7421ae6/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.attempt1.command.log 2099/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/ee184afdaface5a482621d07e8d59d/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1368/aih-tih-sc-d45d48-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/4b378901b194b15a3df05dd92bff6b/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.read_distribution.txt 1326/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/e7eb556de6f179e44373c40f99dc55/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.infer_experiment.txt 1000/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/9693cd587469e3724da20fe42aea01/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_1_fastqc.zip 611/aih-tih-sc-0419d4-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/37fff7c308fc50a0b122c9e53e19af/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.fastp.html 161/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/2e9c38aaf3c896ea22de8f013ca884/aih-tih-sc-674b78-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 931/aih-tih-sc-674b78-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/44de7e573f40b8b55ac3ab6d5fb4a7/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 578/aih-tih-sc-9f6030-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7f/dc0624fb0ae038a16996978164ebdf/aih-tih-sc-951f98-R1_A23WJ53LT4_1_1_fastqc.zip 767/aih-tih-sc-951f98-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/9b4f1929c49b657c40d182fa53a67b/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.md.bam.metrics 1869/aih-tih-sc-d64bdd-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/55856af7a0be1bd15b27d337f068cc/aih-tih-sc-965752-R1_A23WJ53LT4_1.md.bam.metrics 1873/aih-tih-sc-965752-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/38309799e2397da55acb60d4c0a3a8/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1971/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/9393828618fe45fc34165d2191532f/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_preseq_mqc.tsv 2281/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d0/09bbc06fc1b0bc51764eb0642206ee/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.infer_experiment.txt 1009/aih-tih-sc-1ffee4-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/63eb8df002c1c89afdcac8661be88d/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_contamination_mqc.tsv 1740/aih-tih-sc-6f889c-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/aaef96c921ca1edfdfb5a1f7e506b4/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.md.bam.metrics 1840/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/c092d3601b783b981d9044d5a14821/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.fastp.json 29/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/b8a334edf478a9a787af2e9976861a/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.log 215/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/9f41f0954c1a1daa5c3c32903c4070/aih-tih-sc-da460d-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1407/aih-tih-sc-da460d-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/559101b2e48420cac387af5d2e9a68/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2361/aih-tih-sc-6832bb-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/5c1e1994693b0f5398347e0e7965b8/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.infer_experiment.txt 990/aih-tih-sc-66e7f5-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/769b2f9e91d5832da204419c8c328a/aih-tih-sc-560d56-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2315/aih-tih-sc-560d56-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/2df55c34d109873e1f52346e01a67b/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.fastp.html 127/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0019/A23WJ53LT4/nfcore_rnafusion__73d51683--20260607-225254/pipeline_info/nf_core_pipeline_software_mqc_versions.yml 2399/nf_core_pipeline_software_mqc_versions.yml")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/2ff194524cf1ee8f885cec59711aa4/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.inner_distance_freq.txt 1097/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/297835033232d9d18ae0206be8790a/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.log 241/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/1faa04548fa14b854d44a23835875c/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.junction_annotation.log 1212/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/b71070e34cdd3311b870809f2a5b8a/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.inner_distance_freq.txt 1140/aih-tih-sc-9faac1-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/2598d4833549631bd44cd030f53270/aih-tih-sc-965752-R1_A23WJ53LT4_1.junction_annotation.log 1215/aih-tih-sc-965752-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/72af50d0db58b81e6340e7ed9f1b6c/aih-tih-sc-64cace-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1928/aih-tih-sc-64cace-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/4012e775277e6b9d3534e973124d41/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.log 229/aih-tih-sc-9f6030-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/fc29b9edaed16cbdd515d0c478c749/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.log 234/aih-tih-sc-9ab390-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/19f4a2f3755fbe6f2e17d5d2367ca9/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_1_fastqc.zip 701/aih-tih-sc-98fc22-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/85f075fe3e3f75a804814e607de743/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_contamination_mqc.tsv 1746/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/a7a35a7144f792dccab6349f843b5a/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 897/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/bbc14ee2266e791ec42d15daf4030c/aih-tih-sc-af602e-R1_A23WJ53LT4_1_contamination_mqc.tsv 1814/aih-tih-sc-af602e-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/058425778a6fbd306c05f5516c767c/aih-tih-sc-387c73-R1_A23WJ53LT4_1_2_fastqc.zip 678/aih-tih-sc-387c73-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/237fa56eac66d27ccc04ef59777750/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.read_distribution.txt 1284/aih-tih-sc-431fe7-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/9672ed94d97bd096013b125fb8282e/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_1_fastqc.zip 743/aih-tih-sc-e4cfff-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/abbcf45cf958d9521d7b32f5c30ca9/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.md.bam.metrics 1867/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/243b80ce65065e4696ed8a9f8f8feb/aih-tih-sc-606237-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2376/aih-tih-sc-606237-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/fa6b8e22699c0bc37ce5c26bb8436c/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.infer_experiment.txt 1056/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/f7f2c68427eda4203240fcd114d76d/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.bam_stat.txt 1530/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/68aa665fe920e88f6647d6f3270739/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.inner_distance_freq.txt 1122/aih-tih-sc-0992e4-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9c/5876e4a79a860b4b41b2d8e7f094a1/aih-tih-sc-835699-R1_A23WJ53LT4_1.md.bam.metrics 1905/aih-tih-sc-835699-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/340d49d12202b7d46c55aa8aa7968a/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.log 226/aih-tih-sc-1351d2-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/e7ef59b8eec60028fba564ab4b6589/aih-tih-sc-669302-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 498/aih-tih-sc-669302-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e9/bbd00a929fe427429be45e05fefae9/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.bam_stat.txt 1463/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/fb20208132da1e7f2c7e86288e1326/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.lc_extrap.txt 2178/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/de2ae6f1a59ed1c7a2d0e783a8345b/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2372/aih-tih-sc-b675f7-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/0e81145747f294d39319e375955a05/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.fastp.html 185/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/a7a35a7144f792dccab6349f843b5a/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.Log.final.out 801/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/a56779d77c5ce8979e643265c224fb/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_1_fastqc.zip 629/aih-tih-sc-3eb8dd-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/24264e93c2101c367d84dc82bd828b/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.inner_distance_freq.txt 1079/aih-tih-sc-3b54a2-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/eebd31f8946a3c4962c51f7a178d21/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 537/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/a2114bdff1ebc8fa889471a1bbcd75/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.inner_distance_freq.txt 1089/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/3cf863171ae38fed07fe42310865bb/aih-tih-sc-ced210-R1_A23WJ53LT4_1_kallisto_mqc.tsv 355/aih-tih-sc-ced210-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/2c2e2c81a3c19be132a0aa25bee9bd/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.md.bam.metrics 1834/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/299d693af56c6289a2777ae7f9d579/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.log 287/aih-tih-sc-2798bb-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/fa712364d58c4a598e92e9c0acf044/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_1_fastqc.zip 759/aih-tih-sc-c8485b-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a6/9b20ae1328ec0cb4ffe12cd470c912/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.fastp.html 179/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/df311d7f77345f1256e78acb2d63c4/aih-tih-sc-669302-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 956/aih-tih-sc-669302-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/82083ce8b09b9d667394069307b539/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fastp.html 151/aih-tih-sc-2905df-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/f130c248e7b8f90ebc6a16d3790128/aih-tih-sc-7de750-R1_A23WJ53LT4_1_kallisto_mqc.tsv 342/aih-tih-sc-7de750-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/189e501fd023979619fba58588ae9e/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.Log.final.out 830/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/ee39d5031c628f34c828765ffa0b75/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.fastp.json 91/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/17e5fe96827b28189884b7ca335ee3/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.infer_experiment.txt 1029/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/12287ca3b26323fe69557061cd2792/aih-tih-sc-da460d-R1_A23WJ53LT4_1_kallisto_mqc.tsv 347/aih-tih-sc-da460d-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/924fef86d926b42807b323bc281d6a/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 563/aih-tih-sc-9fb608-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1c/652e979b770701bcf5a227c639bc1e/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_2_fastqc.zip 632/aih-tih-sc-00d05f-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/affed71e361eb918d89677b064fae6/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.bam_stat.txt 1528/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/01/5464297583f85afbece7ec94e905fa/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2311/aih-tih-sc-5e5452-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/b527667fb5d31bc8f16da9197299c7/aih-tih-sc-331e97-R1_A23WJ53LT4_1.inner_distance_freq.txt 1060/aih-tih-sc-331e97-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/56cb9dbad521b839835a439cb1548b/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_contamination_mqc.tsv 1758/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8d/1fff0e6334d7511ecf465d54458e46/aih-tih-sc-804b22-R1_A23WJ53LT4_1.read_distribution.txt 1299/aih-tih-sc-804b22-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/a46360c1b3303e4567159bdbab6f47/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_2_fastqc.zip 638/aih-tih-sc-ce4cdc-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/37f71682c9cbbe77c7dab5804ee237/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.lc_extrap.txt 2156/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/e680fd994e7c21dfe66981b759919d/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_contamination_mqc.tsv 1823/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/88e481d2d30fae0d9b1fccdbbc0642/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 954/aih-tih-sc-a19eaa-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/a5bb76c766205c3e7615200f81d570/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.md.bam.metrics 1838/aih-tih-sc-0ce15f-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/9c2e4b21025c4bae8637a9448b878b/aih-tih-sc-488877-R1_A23WJ53LT4_1.inner_distance_freq.txt 1102/aih-tih-sc-488877-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/7fe16015bc07a1545fab10918307a9/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.fastp.json 85/aih-tih-sc-b675f7-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/3744cd7665bf16a8af83ff8d6dba08/aih-tih-sc-835699-R1_A23WJ53LT4_1_kallisto_mqc.tsv 345/aih-tih-sc-835699-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fa/7b5b723b611657a013cbde3e3f068f/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.junction_annotation.log 1218/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/99/eebd31f8946a3c4962c51f7a178d21/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 538/aih-tih-sc-4d6599-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/96e3a0b720b35ef64a177b30f06a0c/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf 2335/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_combined_fusions_arriba_visualisation.pdf")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/88426f8217a9ef2b197d3744dc9929/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_kallisto_mqc.tsv 307/aih-tih-sc-487f7f-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/18436e17f6f1a1b728ceb147f0291d/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.bam_stat.txt 1531/aih-tih-sc-c8485b-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/bdfb0e9df5bddc46d7c4e6d383070d/aih-tih-sc-804b22-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 474/aih-tih-sc-804b22-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/4c9272ba8e882ea184cc7326ddf957/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.fastp.html 142/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/76b4684ac530280e26cb4a7fdb6b86/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.attempt1.command.log 2079/aih-tih-sc-7cc8a0-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/4588501ff739ea562b4b876258dacc/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 454/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/57/84b40bff73c2b863fa3552526d0207/aih-tih-sc-951f98-R1_A23WJ53LT4_1.Log.final.out 857/aih-tih-sc-951f98-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/eb9d3bc3af91fac55568579184d734/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_2_fastqc.zip 616/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/ccfdff11662fa4bac6c518ba642857/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.Log.final.out 832/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/2637e4f1c00739fc23b15bf0d0545b/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1381/aih-tih-sc-8353c5-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/dc78083a9202ed215bc49b0c4e029f/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_preseq_mqc.tsv 2253/aih-tih-sc-8353c5-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/d779ab3a9c68052df9eff0fe7e7c59/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.fastp.html 109/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/2406f14bac3cd1040956325fee31da/aih-tih-sc-408cca-R1_A23WJ53LT4_1.attempt1.command.log 2048/aih-tih-sc-408cca-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/32a15d13dbb4366a37629b2d55b07e/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_2_fastqc.zip 620/aih-tih-sc-431fe7-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/873f6dd3b2af4ee914d383d50e82be/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.fastp.html 105/aih-tih-sc-41b5f1-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/b513f785cdfbbf7ce5d1d1a7d9b25d/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1426/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/8878c02941cd4a42fbeefeb6e98a89/aih-tih-sc-ced210-R1_A23WJ53LT4_1.log 259/aih-tih-sc-ced210-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/d2e45adc51c16fb9ebc133c603c566/aih-tih-sc-55b175-R1_A23WJ53LT4_1.bam_stat.txt 1537/aih-tih-sc-55b175-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/adbc7c7a49af7b6413e82fbe769f8c/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.pos.DupRate.xls 1708/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/d4f81af345da6d261f0499fb254177/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.md.bam.metrics 1830/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/c8504be520cd9b503995626c1f104e/aih-tih-sc-58b830-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 892/aih-tih-sc-58b830-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/8d40b515fc63e38ec9460a7e411001/aih-tih-sc-560d56-R1_A23WJ53LT4_1_kallisto_mqc.tsv 305/aih-tih-sc-560d56-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/ab13d5bcc43367cbec2dfe42f3f4e8/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.bam_stat.txt 1516/aih-tih-sc-cab2fc-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fe/16e551896e947bd33ca8a0a9ad869f/aih-tih-sc-bec563-R1_A23WJ53LT4_1_seqtool_mqc.tsv 1973/aih-tih-sc-bec563-R1_A23WJ53LT4_1_seqtool_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/20d164e2fd248de58620aac7bfd3b9/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_contamination_mqc.tsv 1734/aih-tih-sc-2482ef-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/6177fcde8295888d1e6c9ee8b9966b/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.attempt1.command.log 2063/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/5a399046e562059a67d1ae66c9255a/aih-tih-sc-58b830-R1_A23WJ53LT4_1_kallisto_mqc.tsv 313/aih-tih-sc-58b830-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/31b0eebfcbe1916d68835b0360df16/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.Log.final.out 845/aih-tih-sc-96af5b-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/ae4253f2f4585361f1e8900e9c8561/aih-tih-sc-331e97-R1_A23WJ53LT4_1_kallisto_mqc.tsv 291/aih-tih-sc-331e97-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/eb1b4bc33e6f99dbd09d96c103560c/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 890/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/db/4e345149080e5bb8e580953b55bac7/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_kallisto_mqc.tsv 316/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/bdc93c9b7e0808b850b65af66207e0/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.md.bam.metrics 1922/aih-tih-sc-4ca6a8-R1_A23WJ53LT4_1.md.bam.metrics")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/9434d92f3bac593064c991e4be6cd6/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 922/aih-tih-sc-4fd42c-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/698ed3b84a86d1e9ddcaab370fe30e/NTC_0001_0001_A23WJ53LT4_1.bam_stat.txt 1443/NTC_0001_0001_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/6e32283538e4cb2cbd2b6c848410b0/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.infer_experiment.txt 1043/aih-tih-sc-7d33b9-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9f/069173141cc04b1329ac479549a3c5/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.junction_annotation.log 1221/aih-tih-sc-4d6599-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/06a4e735abd7ed4117bc9b0162676c/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.bam_stat.txt 1506/aih-tih-sc-9fb608-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/575ca872151af06bff7e3514feee0c/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.inner_distance_freq.txt 1120/aih-tih-sc-b7f13b-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/9422aee2ae840c26a16655c80f3632/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.lc_extrap.txt 2146/aih-tih-sc-3e4d53-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/feab1899ead7478628c4704a5ec7c4/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.lc_extrap.txt 2196/aih-tih-sc-cdd9d2-R1_A23WJ53LT4_1.lc_extrap.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/d2651e231711ee7e8b4249838bc886/aih-tih-sc-da460d-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 531/aih-tih-sc-da460d-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/84/c9311ecd21ed420f1a93cc6bdf916d/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.infer_experiment.txt 978/aih-tih-sc-2ca847-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/2e62a87731ac676c9cf3c56cd34ccb/aih-tih-sc-951f98-R1_A23WJ53LT4_1.log 265/aih-tih-sc-951f98-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/646d789456273cff9b76120acb8298/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_1_fastqc.zip 761/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/059a2848b6763882f4ee632504caa7/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.bam_stat.txt 1475/aih-tih-sc-6ff823-R1_A23WJ53LT4_1.bam_stat.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/9910b1d1c0347e9d8b75dbfc65698d/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.junction_annotation.log 1164/aih-tih-sc-6f889c-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/59/6dee8e1e24f926231896d4c06829ca/aih-tih-sc-ced210-R1_A23WJ53LT4_1.attempt1.command.log 2111/aih-tih-sc-ced210-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/8d2022952ec4424b828206c00f4b76/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_contamination_mqc.tsv 1763/aih-tih-sc-6ff823-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/96b2f7d42b0a412d4b6ba5b2ca7e70/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 905/aih-tih-sc-6832bb-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/301a5c31dc9adae0c6920a777416ad/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.junction_annotation.log 1223/aih-tih-sc-4e749e-R1_A23WJ53LT4_1.junction_annotation.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/bfe275ba8d6fb421ad7333f9195707/aih-tih-sc-ced210-R1_A23WJ53LT4_1.ReadsPerGene.out.tab 951/aih-tih-sc-ced210-R1_A23WJ53LT4_1.ReadsPerGene.out.tab")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/fb20208132da1e7f2c7e86288e1326/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.attempt1.command.log 2082/aih-tih-sc-3cac57-R1_A23WJ53LT4_1.attempt1.command.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/527fa2cf2dabdadad9bbc011ce9986/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_contamination_mqc.tsv 1782/aih-tih-sc-6734d6-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/a0d557773d3a9c2b740f3684069b86/aih-tih-sc-331e97-R1_A23WJ53LT4_1.fastp.html 100/aih-tih-sc-331e97-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/e92ebbef9fa26f44b1d81209db6391/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.Log.final.out 791/aih-tih-sc-f29b4f-R1_A23WJ53LT4_1.Log.final.out")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/da2cb2adb3bde00ebfd4c1bf2938e6/aih-tih-sc-2905df-R1_A23WJ53LT4_1.inner_distance_freq.txt 1106/aih-tih-sc-2905df-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7d/27208e145a0f94631ec47b2bb1df49/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.pos.DupRate.xls 1649/aih-tih-sc-6064dc-R1_A23WJ53LT4_1.pos.DupRate.xls")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/c5bc3d73e00ca86e1922ab6433d866/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.read_distribution.txt 1291/aih-tih-sc-e33b0b-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/95/33825f95748702178f9a53ab170251/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_kallisto_mqc.tsv 343/aih-tih-sc-33eb27-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/8d865b731a0a558c15c7de1399d80b/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.fastp.json 15/aih-tih-sc-0419d4-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/b0f847ac4409efe6be7cf5ae45c9bd/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_contamination_mqc.tsv 1796/aih-tih-sc-0992e4-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/fa6869f1032e7b8f9157685ac12972/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.inner_distance_freq.txt 1076/aih-tih-sc-5d3207-R1_A23WJ53LT4_1.inner_distance_freq.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/99d8fd763be06a5cf4383d1c7aa7e1/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_kallisto_mqc.tsv 377/aih-tih-sc-6fcd81-R1_A23WJ53LT4_1_kallisto_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/3c8e24151efecab12fa0314e552dc4/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_1_fastqc.zip 583/aih-tih-sc-f2a1b0-R1_A23WJ53LT4_1_1_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/dd631be7c37e7455ada59b273dc76d/aih-tih-sc-965752-R1_A23WJ53LT4_1.log 270/aih-tih-sc-965752-R1_A23WJ53LT4_1.log")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/83e55c0490b84adeb330354acc054e/aih-tih-sc-835699-R1_A23WJ53LT4_1.fastp.json 79/aih-tih-sc-835699-R1_A23WJ53LT4_1.fastp.json")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/cf3985295c514860aee8836de1eaca/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.junctionSaturation_plot.r 1358/aih-tih-sc-487f7f-R1_A23WJ53LT4_1.junctionSaturation_plot.r")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/4e3387652e5ad6250e89b8cd95eb1e/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.fastp.html 153/aih-tih-sc-2d4b78-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/3bbf95329cd2c55aeb0a9ec7952d77/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.infer_experiment.txt 966/aih-tih-sc-2482ef-R1_A23WJ53LT4_1.infer_experiment.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/2fb4585c1bb93f57951dc709fd7c8e/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_2_fastqc.zip 666/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/39/328556c53fc11fe3aa7c37a26db9fc/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.read_distribution.txt 1290/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.read_distribution.txt")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/d7d87e19912791cc0563f903f78699/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 470/aih-tih-sc-2798bb-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/97fd2a7b4fa7ac902003d0105533e1/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.fastp.html 149/aih-tih-sc-1dd7a6-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/a9313af80fb9dd9c9916805145f6d7/aih-tih-sc-06a169-R1_A23WJ53LT4_1_preseq_mqc.tsv 2247/aih-tih-sc-06a169-R1_A23WJ53LT4_1_preseq_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/39337784396203295bc445054cac0a/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.fastp.html 171/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.fastp.html")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/ecc0dcc7141ab31d8720b2f7f646c6/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip 492/aih-tih-sc-9ee8d4-R1_A23WJ53LT4_1_trimmed_2_fastqc.zip")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/5e7a2ca4795ab25499e71a92c99b8a/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_contamination_mqc.tsv 1803/aih-tih-sc-4c132f-R1_A23WJ53LT4_1_contamination_mqc.tsv")
downloads+=("nxf_s3_download s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/322f36e3b1b459af032cab5d5ddf76/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip 487/aih-tih-sc-12b72b-R1_A23WJ53LT4_1_trimmed_1_fastqc.zip")
nxf_parallel "${downloads[@]}"
echo "==> STAGING COMPLETE (2402 inputs)"
echo ""
}
nxf_unstage_outputs() {
true
uploads=()
IFS=$'\n'
for name in $(eval "ls -1d *multiqc_report.html *_data *_plots versions.yml" | sort | uniq); do
uploads+=("nxf_s3_upload '$name' s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/76b483d31270bc6f8b5d15e1846f31")
done
unset IFS
nxf_parallel "${uploads[@]}"
}
nxf_unstage_controls() {
true
nxf_s3_upload .command.out s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/76b483d31270bc6f8b5d15e1846f31 || true
nxf_s3_upload .command.err s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/76b483d31270bc6f8b5d15e1846f31 || true
nxf_s3_upload .command.trace s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/76b483d31270bc6f8b5d15e1846f31 || true
}
nxf_unstage() {
if [[ ${nxf_main_ret:=0} == 0 ]]; then
(set -e -o pipefail; (nxf_unstage_outputs | tee -a .command.out) 3>&1 1>&2 2>&3 | tee -a .command.err)
nxf_unstage_ret=$?
fi
nxf_unstage_controls
}
nxf_main() {
trap on_exit EXIT
trap on_term TERM INT USR2
trap '' USR1
[[ "${NXF_CHDIR:-}" ]] && cd "$NXF_CHDIR"
NXF_SCRATCH="$(set +u; nxf_mktemp /tmp)"
[[ $NXF_DEBUG > 0 ]] && nxf_env
echo start | nxf_s3_upload - s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/76b483d31270bc6f8b5d15e1846f31/.command.begin
set +u
set -u
/opt/s5cmd/bin/s5cmd --log error cp "s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/tmp/d4/f48eb919dae13a1f1e8b085019f2dc/bin/*" $NXF_SCRATCH/nextflow-bin/
chmod +x $NXF_SCRATCH/nextflow-bin/* || true
export PATH=$NXF_SCRATCH/nextflow-bin:$PATH
export PYTHONNOUSERSITE="1"
export R_PROFILE_USER="/.Rprofile"
export R_ENVIRON_USER="/.Renviron"
export JULIA_DEPOT_PATH="/usr/local/share/julia"
[[ $NXF_SCRATCH ]] && cd $NXF_SCRATCH
export NXF_TASK_WORKDIR="$PWD"
nxf_stage
set +e
(set -o pipefail; (nxf_launch | tee .command.out) 3>&1 1>&2 2>&3 | tee .command.err) &
pid=$!
wait $pid || nxf_main_ret=$?
nxf_unstage
}
$NXF_ENTRY