Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/ad5acbe1b85003b43eb5993ac4669f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/3ed07e3eed54fdf5320f011c127455/aih-tih-sc-3a13e9-R1_A23WJ53LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/ad5acbe1b85003b43eb5993ac4669f/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory