Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/314160b12038535efa82e9526f6b03/fi_workdir/aih-tih-sc-bec563-R1_A23WJ53LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/0fc849ce52054f83508d6503a0f039/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/0fc849ce52054f83508d6503a0f039/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 25682
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 25682
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:25682
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 5 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASCC3--GRIK2 HAVANA gene 1001 27062 . + . FI_gene_label "ASCC3^ENSG00000112249.14" ; ID "ASCC3--GRIK2^ASCC3^ENSG00000112249.14" ; exon_id "ENSE00003679352.1" ; exon_number 2 ; gene_id "ASCC3--GRIK2^ASCC3^ENSG00000112249.14" ; gene_name ASCC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015279.4" ; havana_transcript "OTTHUMT00000376738.1" ; hgnc_id "HGNC:18697" ; level 2 ; orig_coord_info "chr6,100867908,100867997,-" ; protein_id "ENSP00000320252.4" ; transcript_id "ASCC3--GRIK2^ENST00000324696.8" ; transcript_name "ASCC3-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
ASCC3--GRIK2 HAVANA mRNA 1001 27062 . + . FI_gene_label "ASCC3^ENSG00000112249.14" ; ID "ASCC3--GRIK2^ENST00000324696.8" ; Parent "ASCC3--GRIK2^ASCC3^ENSG00000112249.14" ; exon_id "ENSE00003679352.1" ; exon_number 2 ; gene_id "ASCC3--GRIK2^ASCC3^ENSG00000112249.14" ; gene_name ASCC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015279.4" ; havana_transcript "OTTHUMT00000376738.1" ; hgnc_id "HGNC:18697" ; level 2 ; orig_coord_info "chr6,100867908,100867997,-" ; protein_id "ENSP00000320252.4" ; transcript_id "ASCC3--GRIK2^ENST00000324696.8" ; transcript_name "ASCC3-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
ASCC3--GRIK2 HAVANA gene 56248 65444 . + . FI_gene_label "GRIK2^ENSG00000164418.21" ; ID "ASCC3--GRIK2^GRIK2^ENSG00000164418.21" ; exon_id "ENSE00001512841.1" ; exon_number 1 ; gene_id "ASCC3--GRIK2^GRIK2^ENSG00000164418.21" ; gene_name GRIK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016328.7" ; havana_transcript "OTTHUMT00000258911.1" ; hgnc_id "HGNC:4580" ; level 2 ; orig_coord_info "chr6,101399278,101399392,+" ; protein_id "ENSP00000351128.3" ; tag basic ; transcript_id "ASCC3--GRIK2^ENST00000358361.7" ; transcript_name "GRIK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASCC3--GRIK2 HAVANA mRNA 56248 65444 . + . FI_gene_label "GRIK2^ENSG00000164418.21" ; ID "ASCC3--GRIK2^ENST00000358361.7" ; Parent "ASCC3--GRIK2^GRIK2^ENSG00000164418.21" ; exon_id "ENSE00001512841.1" ; exon_number 1 ; gene_id "ASCC3--GRIK2^GRIK2^ENSG00000164418.21" ; gene_name GRIK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016328.7" ; havana_transcript "OTTHUMT00000258911.1" ; hgnc_id "HGNC:4580" ; level 2 ; orig_coord_info "chr6,101399278,101399392,+" ; protein_id "ENSP00000351128.3" ; tag basic ; transcript_id "ASCC3--GRIK2^ENST00000358361.7" ; transcript_name "GRIK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATG5--CD24 HAVANA gene 1375 13170 . + . FI_gene_label "ATG5^ENSG00000057663.16" ; ID "ATG5--CD24^ATG5^ENSG00000057663.16" ; ccdsid "CCDS5055.1" ; exon_id "ENSE00003664444.1" ; exon_number 2 ; gene_id "ATG5--CD24^ATG5^ENSG00000057663.16" ; gene_name ATG5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016193.6" ; havana_transcript "OTTHUMT00000043477.1" ; hgnc_id "HGNC:589" ; level 2 ; orig_coord_info "chr6,106316101,106316208,-" ; protein_id "ENSP00000343313.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "ATG5--CD24^ENST00000343245.7" ; transcript_name "ATG5-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATG5--CD24 HAVANA mRNA 1375 13170 . + . FI_gene_label "ATG5^ENSG00000057663.16" ; ID "ATG5--CD24^ENST00000343245.7" ; Parent "ATG5--CD24^ATG5^ENSG00000057663.16" ; ccdsid "CCDS5055.1" ; exon_id "ENSE00003664444.1" ; exon_number 2 ; gene_id "ATG5--CD24^ATG5^ENSG00000057663.16" ; gene_name ATG5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016193.6" ; havana_transcript "OTTHUMT00000043477.1" ; hgnc_id "HGNC:589" ; level 2 ; orig_coord_info "chr6,106316101,106316208,-" ; protein_id "ENSP00000343313.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "ATG5--CD24^ENST00000343245.7" ; transcript_name "ATG5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATG5--CD24 HAVANA gene 21662 26008 . + . FI_gene_label "CD24^ENSG00000272398.6" ; ID "ATG5--CD24^CD24^ENSG00000272398.6" ; ccdsid "CCDS75499.1" ; exon_id "ENSE00003696480.2" ; exon_number 1 ; gene_id "ATG5--CD24^CD24^ENSG00000272398.6" ; gene_name CD24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188439.3" ; havana_transcript "OTTHUMT00000504375.2" ; hgnc_id "HGNC:1645" ; level 2 ; orig_coord_info "chr6,106974578,106974646,-" ; protein_id "ENSP00000475625.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATG5--CD24^ENST00000606017.2" ; transcript_name "CD24-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATG5--CD24 HAVANA mRNA 21662 26008 . + . FI_gene_label "CD24^ENSG00000272398.6" ; ID "ATG5--CD24^ENST00000606017.2" ; Parent "ATG5--CD24^CD24^ENSG00000272398.6" ; ccdsid "CCDS75499.1" ; exon_id "ENSE00003696480.2" ; exon_number 1 ; gene_id "ATG5--CD24^CD24^ENSG00000272398.6" ; gene_name CD24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188439.3" ; havana_transcript "OTTHUMT00000504375.2" ; hgnc_id "HGNC:1645" ; level 2 ; orig_coord_info "chr6,106974578,106974646,-" ; protein_id "ENSP00000475625.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ATG5--CD24^ENST00000606017.2" ; transcript_name "CD24-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BBS9--ZNRF2 HAVANA gene 2486 36918 . + . FI_gene_label "BBS9^ENSG00000122507.21" ; ID "BBS9--ZNRF2^BBS9^ENSG00000122507.21" ; ccdsid "CCDS43566.1" ; exon_id "ENSE00003683228.1" ; exon_number 2 ; gene_id "BBS9--ZNRF2^BBS9^ENSG00000122507.21" ; gene_name BBS9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128659.7" ; havana_transcript "OTTHUMT00000329064.2" ; hgnc_id "HGNC:30000" ; level 2 ; orig_coord_info "chr7,33146253,33146364,+" ; protein_id "ENSP00000242067.6" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_4 CCDS ; transcript_id "BBS9--ZNRF2^ENST00000242067.11" ; transcript_name "BBS9-201" ; transcript_support_level 1 ; transcript_type protein_coding
BBS9--ZNRF2 HAVANA mRNA 2486 36918 . + . FI_gene_label "BBS9^ENSG00000122507.21" ; ID "BBS9--ZNRF2^ENST00000242067.11" ; Parent "BBS9--ZNRF2^BBS9^ENSG00000122507.21" ; ccdsid "CCDS43566.1" ; exon_id "ENSE00003683228.1" ; exon_number 2 ; gene_id "BBS9--ZNRF2^BBS9^ENSG00000122507.21" ; gene_name BBS9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128659.7" ; havana_transcript "OTTHUMT00000329064.2" ; hgnc_id "HGNC:30000" ; level 2 ; orig_coord_info "chr7,33146253,33146364,+" ; protein_id "ENSP00000242067.6" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_4 CCDS ; transcript_id "BBS9--ZNRF2^ENST00000242067.11" ; transcript_name "BBS9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BBS9--ZNRF2 HAVANA gene 50478 58880 . + . FI_gene_label "ZNRF2^ENSG00000180233.11" ; ID "BBS9--ZNRF2^ZNRF2^ENSG00000180233.11" ; ccdsid "CCDS5426.1" ; exon_id "ENSE00001375265.2" ; exon_number 1 ; gene_id "BBS9--ZNRF2^ZNRF2^ENSG00000180233.11" ; gene_name ZNRF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097759.4" ; havana_transcript "OTTHUMT00000214992.2" ; hgnc_id "HGNC:22316" ; level 2 ; orig_coord_info "chr7,30285358,30285826,+" ; protein_id "ENSP00000323879.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BBS9--ZNRF2^ENST00000323037.5" ; transcript_name "ZNRF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BBS9--ZNRF2 HAVANA mRNA 50478 58880 . + . FI_gene_label "ZNRF2^ENSG00000180233.11" ; ID "BBS9--ZNRF2^ENST00000323037.5" ; Parent "BBS9--ZNRF2^ZNRF2^ENSG00000180233.11" ; ccdsid "CCDS5426.1" ; exon_id "ENSE00001375265.2" ; exon_number 1 ; gene_id "BBS9--ZNRF2^ZNRF2^ENSG00000180233.11" ; gene_name ZNRF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097759.4" ; havana_transcript "OTTHUMT00000214992.2" ; hgnc_id "HGNC:22316" ; level 2 ; orig_coord_info "chr7,30285358,30285826,+" ; protein_id "ENSP00000323879.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BBS9--ZNRF2^ENST00000323037.5" ; transcript_name "ZNRF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C17orf75--GLIS3 ENSEMBL gene 2143 13556 . + . FI_gene_label "C17orf75^ENSG00000108666.10" ; ID "C17orf75--GLIS3^C17orf75^ENSG00000108666.10" ; exon_id "ENSE00002684233.1" ; exon_number 1 ; gene_id "C17orf75--GLIS3^C17orf75^ENSG00000108666.10" ; gene_name C17orf75 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179585.4" ; hgnc_id "HGNC:30173" ; level 3 ; orig_coord_info "chr17,32342000,32342139,-" ; protein_id "ENSP00000225805.4" ; tag basic appris_alternative_2 ; transcript_id "C17orf75--GLIS3^ENST00000225805.8" ; transcript_name "C17orf75-201" ; transcript_support_level 5 ; transcript_type protein_coding
C17orf75--GLIS3 ENSEMBL mRNA 2143 13556 . + . FI_gene_label "C17orf75^ENSG00000108666.10" ; ID "C17orf75--GLIS3^ENST00000225805.8" ; Parent "C17orf75--GLIS3^C17orf75^ENSG00000108666.10" ; exon_id "ENSE00002684233.1" ; exon_number 1 ; gene_id "C17orf75--GLIS3^C17orf75^ENSG00000108666.10" ; gene_name C17orf75 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179585.4" ; hgnc_id "HGNC:30173" ; level 3 ; orig_coord_info "chr17,32342000,32342139,-" ; protein_id "ENSP00000225805.4" ; tag basic appris_alternative_2 ; transcript_id "C17orf75--GLIS3^ENST00000225805.8" ; transcript_name "C17orf75-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
C17orf75--GLIS3 HAVANA gene 27023 53690 . + . FI_gene_label "GLIS3^ENSG00000107249.23" ; ID "C17orf75--GLIS3^GLIS3^ENSG00000107249.23" ; ccdsid "CCDS6451.1" ; exon_id "ENSE00003508620.1" ; exon_number 2 ; gene_id "C17orf75--GLIS3^GLIS3^ENSG00000107249.23" ; gene_name GLIS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019463.7" ; havana_transcript "OTTHUMT00000051559.1" ; hgnc_id "HGNC:28510" ; level 2 ; orig_coord_info "chr9,4125734,4125864,-" ; protein_id "ENSP00000325494.10" ; tag basic appris_alternative_2 CCDS ; transcript_id "C17orf75--GLIS3^ENST00000324333.14" ; transcript_name "GLIS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
C17orf75--GLIS3 HAVANA mRNA 27023 53690 . + . FI_gene_label "GLIS3^ENSG00000107249.23" ; ID "C17orf75--GLIS3^ENST00000324333.14" ; Parent "C17orf75--GLIS3^GLIS3^ENSG00000107249.23" ; ccdsid "CCDS6451.1" ; exon_id "ENSE00003508620.1" ; exon_number 2 ; gene_id "C17orf75--GLIS3^GLIS3^ENSG00000107249.23" ; gene_name GLIS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019463.7" ; havana_transcript "OTTHUMT00000051559.1" ; hgnc_id "HGNC:28510" ; level 2 ; orig_coord_info "chr9,4125734,4125864,-" ; protein_id "ENSP00000325494.10" ; tag basic appris_alternative_2 CCDS ; transcript_id "C17orf75--GLIS3^ENST00000324333.14" ; transcript_name "GLIS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CAMK1D--AC069114.1 HAVANA gene 1187 12275 . + . FI_gene_label "CAMK1D^ENSG00000183049.13" ; ID "CAMK1D--AC069114.1^CAMK1D^ENSG00000183049.13" ; ccdsid "CCDS7092.1" ; exon_id "ENSE00001478980.1" ; exon_number 1 ; gene_id "CAMK1D--AC069114.1^CAMK1D^ENSG00000183049.13" ; gene_name CAMK1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000017683.3" ; havana_transcript "OTTHUMT00000046821.1" ; hgnc_id "HGNC:19341" ; level 2 ; orig_coord_info "chr10,12349819,12349910,+" ; protein_id "ENSP00000368122.1" ; tag basic CCDS ; transcript_id "CAMK1D--AC069114.1^ENST00000378845.5" ; transcript_name "CAMK1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
CAMK1D--AC069114.1 HAVANA mRNA 1187 12275 . + . FI_gene_label "CAMK1D^ENSG00000183049.13" ; ID "CAMK1D--AC069114.1^ENST00000378845.5" ; Parent "CAMK1D--AC069114.1^CAMK1D^ENSG00000183049.13" ; ccdsid "CCDS7092.1" ; exon_id "ENSE00001478980.1" ; exon_number 1 ; gene_id "CAMK1D--AC069114.1^CAMK1D^ENSG00000183049.13" ; gene_name CAMK1D ; gene_type protein_coding ; havana_gene "OTTHUMG00000017683.3" ; havana_transcript "OTTHUMT00000046821.1" ; hgnc_id "HGNC:19341" ; level 2 ; orig_coord_info "chr10,12349819,12349910,+" ; protein_id "ENSP00000368122.1" ; tag basic CCDS ; transcript_id "CAMK1D--AC069114.1^ENST00000378845.5" ; transcript_name "CAMK1D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD24--RTN4IP1 HAVANA gene 9246 20657 . + . FI_gene_label "RTN4IP1^ENSG00000130347.13" ; ID "CD24--RTN4IP1^RTN4IP1^ENSG00000130347.13" ; ccdsid "CCDS5056.1" ; exon_id "ENSE00001448731.4" ; exon_number 1 ; gene_id "CD24--RTN4IP1^RTN4IP1^ENSG00000130347.13" ; gene_name RTN4IP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015304.2" ; havana_transcript "OTTHUMT00000041673.2" ; hgnc_id "HGNC:18647" ; level 2 ; orig_coord_info "chr6,106628748,106629021,-" ; protein_id "ENSP00000358059.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CD24--RTN4IP1^ENST00000369063.8" ; transcript_name "RTN4IP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CD24--RTN4IP1 HAVANA mRNA 9246 20657 . + . FI_gene_label "RTN4IP1^ENSG00000130347.13" ; ID "CD24--RTN4IP1^ENST00000369063.8" ; Parent "CD24--RTN4IP1^RTN4IP1^ENSG00000130347.13" ; ccdsid "CCDS5056.1" ; exon_id "ENSE00001448731.4" ; exon_number 1 ; gene_id "CD24--RTN4IP1^RTN4IP1^ENSG00000130347.13" ; gene_name RTN4IP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015304.2" ; havana_transcript "OTTHUMT00000041673.2" ; hgnc_id "HGNC:18647" ; level 2 ; orig_coord_info "chr6,106628748,106629021,-" ; protein_id "ENSP00000358059.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CD24--RTN4IP1^ENST00000369063.8" ; transcript_name "RTN4IP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD24--RTN4IP1 HAVANA gene 1899 6245 . + . FI_gene_label "CD24^ENSG00000272398.6" ; ID "CD24--RTN4IP1^CD24^ENSG00000272398.6" ; ccdsid "CCDS75499.1" ; exon_id "ENSE00003696480.2" ; exon_number 1 ; gene_id "CD24--RTN4IP1^CD24^ENSG00000272398.6" ; gene_name CD24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188439.3" ; havana_transcript "OTTHUMT00000504375.2" ; hgnc_id "HGNC:1645" ; level 2 ; orig_coord_info "chr6,106974578,106974646,-" ; protein_id "ENSP00000475625.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "CD24--RTN4IP1^ENST00000606017.2" ; transcript_name "CD24-201" ; transcript_support_level 1 ; transcript_type protein_coding
CD24--RTN4IP1 HAVANA mRNA 1899 6245 . + . FI_gene_label "CD24^ENSG00000272398.6" ; ID "CD24--RTN4IP1^ENST00000606017.2" ; Parent "CD24--RTN4IP1^CD24^ENSG00000272398.6" ; ccdsid "CCDS75499.1" ; exon_id "ENSE00003696480.2" ; exon_number 1 ; gene_id "CD24--RTN4IP1^CD24^ENSG00000272398.6" ; gene_name CD24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188439.3" ; havana_transcript "OTTHUMT00000504375.2" ; hgnc_id "HGNC:1645" ; level 2 ; orig_coord_info "chr6,106974578,106974646,-" ; protein_id "ENSP00000475625.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "CD24--RTN4IP1^ENST00000606017.2" ; transcript_name "CD24-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD58--PHTF1 HAVANA gene 10798 27573 . + . FI_gene_label "PHTF1^ENSG00000116793.16" ; ID "CD58--PHTF1^PHTF1^ENSG00000116793.16" ; ccdsid "CCDS81359.1" ; exon_id "ENSE00001417745.1" ; exon_number 2 ; gene_id "CD58--PHTF1^PHTF1^ENSG00000116793.16" ; gene_name PHTF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011800.3" ; havana_transcript "OTTHUMT00000032667.1" ; hgnc_id "HGNC:8939" ; level 2 ; orig_coord_info "chr1,113758659,113758703,-" ; protein_id "ENSP00000350428.2" ; tag basic CCDS ; transcript_id "CD58--PHTF1^ENST00000357783.6" ; transcript_name "PHTF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CD58--PHTF1 HAVANA mRNA 10798 27573 . + . FI_gene_label "PHTF1^ENSG00000116793.16" ; ID "CD58--PHTF1^ENST00000357783.6" ; Parent "CD58--PHTF1^PHTF1^ENSG00000116793.16" ; ccdsid "CCDS81359.1" ; exon_id "ENSE00001417745.1" ; exon_number 2 ; gene_id "CD58--PHTF1^PHTF1^ENSG00000116793.16" ; gene_name PHTF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011800.3" ; havana_transcript "OTTHUMT00000032667.1" ; hgnc_id "HGNC:8939" ; level 2 ; orig_coord_info "chr1,113758659,113758703,-" ; protein_id "ENSP00000350428.2" ; tag basic CCDS ; transcript_id "CD58--PHTF1^ENST00000357783.6" ; transcript_name "PHTF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD58--PHTF1 HAVANA gene 1001 4892 . + . FI_gene_label "CD58^ENSG00000116815.16" ; ID "CD58--PHTF1^CD58^ENSG00000116815.16" ; exon_id "ENSE00000957936.4" ; exon_number 1 ; gene_id "CD58--PHTF1^CD58^ENSG00000116815.16" ; gene_name CD58 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022749.5" ; havana_transcript "OTTHUMT00000059037.1" ; hgnc_id "HGNC:1688" ; level 2 ; orig_coord_info "chr1,116570903,116570972,-" ; protein_id "ENSP00000358499.3" ; tag basic appris_alternative_2 ; transcript_id "CD58--PHTF1^ENST00000369487.3" ; transcript_name "CD58-201" ; transcript_support_level 1 ; transcript_type protein_coding
CD58--PHTF1 HAVANA mRNA 1001 4892 . + . FI_gene_label "CD58^ENSG00000116815.16" ; ID "CD58--PHTF1^ENST00000369487.3" ; Parent "CD58--PHTF1^CD58^ENSG00000116815.16" ; exon_id "ENSE00000957936.4" ; exon_number 1 ; gene_id "CD58--PHTF1^CD58^ENSG00000116815.16" ; gene_name CD58 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022749.5" ; havana_transcript "OTTHUMT00000059037.1" ; hgnc_id "HGNC:1688" ; level 2 ; orig_coord_info "chr1,116570903,116570972,-" ; protein_id "ENSP00000358499.3" ; tag basic appris_alternative_2 ; transcript_id "CD58--PHTF1^ENST00000369487.3" ; transcript_name "CD58-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLTC--VMP1 HAVANA gene 39205 57907 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "CLTC--VMP1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "CLTC--VMP1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLTC--VMP1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLTC--VMP1 HAVANA mRNA 39205 57907 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "CLTC--VMP1^ENST00000262291.9" ; Parent "CLTC--VMP1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "CLTC--VMP1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLTC--VMP1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CLTC--VMP1 HAVANA gene 1207 35742 . + . FI_gene_label "CLTC^ENSG00000141367.12" ; ID "CLTC--VMP1^CLTC^ENSG00000141367.12" ; ccdsid "CCDS32696.1" ; exon_id "ENSE00003895422.1" ; exon_number 1 ; gene_id "CLTC--VMP1^CLTC^ENSG00000141367.12" ; gene_name CLTC ; gene_type protein_coding ; havana_gene "OTTHUMG00000134279.5" ; havana_transcript "OTTHUMT00000258859.2" ; hgnc_id "HGNC:2092" ; level 2 ; orig_coord_info "chr17,59620132,59620173,+" ; protein_id "ENSP00000269122.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLTC--VMP1^ENST00000269122.8" ; transcript_name "CLTC-201" ; transcript_support_level 1 ; transcript_type protein_coding
CLTC--VMP1 HAVANA mRNA 1207 35742 . + . FI_gene_label "CLTC^ENSG00000141367.12" ; ID "CLTC--VMP1^ENST00000269122.8" ; Parent "CLTC--VMP1^CLTC^ENSG00000141367.12" ; ccdsid "CCDS32696.1" ; exon_id "ENSE00003895422.1" ; exon_number 1 ; gene_id "CLTC--VMP1^CLTC^ENSG00000141367.12" ; gene_name CLTC ; gene_type protein_coding ; havana_gene "OTTHUMG00000134279.5" ; havana_transcript "OTTHUMT00000258859.2" ; hgnc_id "HGNC:2092" ; level 2 ; orig_coord_info "chr17,59620132,59620173,+" ; protein_id "ENSP00000269122.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CLTC--VMP1^ENST00000269122.8" ; transcript_name "CLTC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
COPB2--AC133530.1 HAVANA gene 1090 26741 . + . FI_gene_label "COPB2^ENSG00000184432.11" ; ID "COPB2--AC133530.1^COPB2^ENSG00000184432.11" ; ccdsid "CCDS3108.1" ; exon_id "ENSE00002035761.2" ; exon_number 1 ; gene_id "COPB2--AC133530.1^COPB2^ENSG00000184432.11" ; gene_name COPB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159959.5" ; havana_transcript "OTTHUMT00000358495.3" ; hgnc_id "HGNC:2232" ; level 2 ; orig_coord_info "chr3,139389548,139389550,-" ; protein_id "ENSP00000329419.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COPB2--AC133530.1^ENST00000333188.10" ; transcript_name "COPB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
COPB2--AC133530.1 HAVANA mRNA 1090 26741 . + . FI_gene_label "COPB2^ENSG00000184432.11" ; ID "COPB2--AC133530.1^ENST00000333188.10" ; Parent "COPB2--AC133530.1^COPB2^ENSG00000184432.11" ; ccdsid "CCDS3108.1" ; exon_id "ENSE00002035761.2" ; exon_number 1 ; gene_id "COPB2--AC133530.1^COPB2^ENSG00000184432.11" ; gene_name COPB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159959.5" ; havana_transcript "OTTHUMT00000358495.3" ; hgnc_id "HGNC:2232" ; level 2 ; orig_coord_info "chr3,139389548,139389550,-" ; protein_id "ENSP00000329419.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "COPB2--AC133530.1^ENST00000333188.10" ; transcript_name "COPB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSDE1--KCNA2 HAVANA gene 1703 24305 . + . FI_gene_label "CSDE1^ENSG00000009307.16" ; ID "CSDE1--KCNA2^CSDE1^ENSG00000009307.16" ; ccdsid "CCDS30811.1" ; exon_id "ENSE00003759691.1" ; exon_number 2 ; gene_id "CSDE1--KCNA2^CSDE1^ENSG00000009307.16" ; gene_name CSDE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012060.6" ; havana_transcript "OTTHUMT00000033398.1" ; hgnc_id "HGNC:29905" ; level 2 ; orig_coord_info "chr1,114739692,114739890,-" ; protein_id "ENSP00000261443.5" ; tag alternative_5_UTR basic appris_alternative_1 CCDS ; transcript_id "CSDE1--KCNA2^ENST00000261443.9" ; transcript_name "CSDE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSDE1--KCNA2 HAVANA mRNA 1703 24305 . + . FI_gene_label "CSDE1^ENSG00000009307.16" ; ID "CSDE1--KCNA2^ENST00000261443.9" ; Parent "CSDE1--KCNA2^CSDE1^ENSG00000009307.16" ; ccdsid "CCDS30811.1" ; exon_id "ENSE00003759691.1" ; exon_number 2 ; gene_id "CSDE1--KCNA2^CSDE1^ENSG00000009307.16" ; gene_name CSDE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012060.6" ; havana_transcript "OTTHUMT00000033398.1" ; hgnc_id "HGNC:29905" ; level 2 ; orig_coord_info "chr1,114739692,114739890,-" ; protein_id "ENSP00000261443.5" ; tag alternative_5_UTR basic appris_alternative_1 CCDS ; transcript_id "CSDE1--KCNA2^ENST00000261443.9" ; transcript_name "CSDE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSDE1--KCNA2 HAVANA gene 33569 46347 . + . FI_gene_label "KCNA2^ENSG00000177301.16" ; ID "CSDE1--KCNA2^KCNA2^ENSG00000177301.16" ; ccdsid "CCDS827.1" ; exon_id "ENSE00003776617.1" ; exon_number 3 ; gene_id "CSDE1--KCNA2^KCNA2^ENSG00000177301.16" ; gene_name KCNA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011567.10" ; havana_transcript "OTTHUMT00000392423.3" ; hgnc_id "HGNC:6220" ; level 2 ; orig_coord_info "chr1,110603286,110604782,-" ; protein_id "ENSP00000314520.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSDE1--KCNA2^ENST00000316361.10" ; transcript_name "KCNA2-201" ; transcript_support_level 2 ; transcript_type protein_coding
CSDE1--KCNA2 HAVANA mRNA 33569 46347 . + . FI_gene_label "KCNA2^ENSG00000177301.16" ; ID "CSDE1--KCNA2^ENST00000316361.10" ; Parent "CSDE1--KCNA2^KCNA2^ENSG00000177301.16" ; ccdsid "CCDS827.1" ; exon_id "ENSE00003776617.1" ; exon_number 3 ; gene_id "CSDE1--KCNA2^KCNA2^ENSG00000177301.16" ; gene_name KCNA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011567.10" ; havana_transcript "OTTHUMT00000392423.3" ; hgnc_id "HGNC:6220" ; level 2 ; orig_coord_info "chr1,110603286,110604782,-" ; protein_id "ENSP00000314520.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSDE1--KCNA2^ENST00000316361.10" ; transcript_name "KCNA2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DCTN2--AC026120.1 HAVANA gene 1084 16243 . + . FI_gene_label "DCTN2^ENSG00000175203.17" ; ID "DCTN2--AC026120.1^DCTN2^ENSG00000175203.17" ; ccdsid "CCDS44930.1" ; exon_id "ENSE00002405526.1" ; exon_number 1 ; gene_id "DCTN2--AC026120.1^DCTN2^ENSG00000175203.17" ; gene_name DCTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170124.5" ; havana_transcript "OTTHUMT00000407631.1" ; hgnc_id "HGNC:2712" ; level 2 ; orig_coord_info "chr12,57547028,57547063,-" ; protein_id "ENSP00000408910.3" ; tag dotter_confirmed basic appris_alternative_1 CCDS ; transcript_id "DCTN2--AC026120.1^ENST00000434715.7" ; transcript_name "DCTN2-201" ; transcript_support_level 5 ; transcript_type protein_coding
DCTN2--AC026120.1 HAVANA mRNA 1084 16243 . + . FI_gene_label "DCTN2^ENSG00000175203.17" ; ID "DCTN2--AC026120.1^ENST00000434715.7" ; Parent "DCTN2--AC026120.1^DCTN2^ENSG00000175203.17" ; ccdsid "CCDS44930.1" ; exon_id "ENSE00002405526.1" ; exon_number 1 ; gene_id "DCTN2--AC026120.1^DCTN2^ENSG00000175203.17" ; gene_name DCTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170124.5" ; havana_transcript "OTTHUMT00000407631.1" ; hgnc_id "HGNC:2712" ; level 2 ; orig_coord_info "chr12,57547028,57547063,-" ; protein_id "ENSP00000408910.3" ; tag dotter_confirmed basic appris_alternative_1 CCDS ; transcript_id "DCTN2--AC026120.1^ENST00000434715.7" ; transcript_name "DCTN2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DCTN2--RDH16 HAVANA gene 21688 25965 . + . FI_gene_label "RDH16^ENSG00000139547.8" ; ID "DCTN2--RDH16^RDH16^ENSG00000139547.8" ; ccdsid "CCDS41797.1" ; exon_id "ENSE00002433334.2" ; exon_number 1 ; gene_id "DCTN2--RDH16^RDH16^ENSG00000139547.8" ; gene_name RDH16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170895.2" ; havana_transcript "OTTHUMT00000410898.2" ; hgnc_id "HGNC:29674" ; level 2 ; orig_coord_info "chr12,56957150,56957462,-" ; protein_id "ENSP00000381206.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DCTN2--RDH16^ENST00000398138.5" ; transcript_name "RDH16-202" ; transcript_support_level 1 ; transcript_type protein_coding
DCTN2--RDH16 HAVANA mRNA 21688 25965 . + . FI_gene_label "RDH16^ENSG00000139547.8" ; ID "DCTN2--RDH16^ENST00000398138.5" ; Parent "DCTN2--RDH16^RDH16^ENSG00000139547.8" ; ccdsid "CCDS41797.1" ; exon_id "ENSE00002433334.2" ; exon_number 1 ; gene_id "DCTN2--RDH16^RDH16^ENSG00000139547.8" ; gene_name RDH16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170895.2" ; havana_transcript "OTTHUMT00000410898.2" ; hgnc_id "HGNC:29674" ; level 2 ; orig_coord_info "chr12,56957150,56957462,-" ; protein_id "ENSP00000381206.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DCTN2--RDH16^ENST00000398138.5" ; transcript_name "RDH16-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DCTN2--RDH16 HAVANA gene 1084 16243 . + . FI_gene_label "DCTN2^ENSG00000175203.17" ; ID "DCTN2--RDH16^DCTN2^ENSG00000175203.17" ; ccdsid "CCDS44930.1" ; exon_id "ENSE00002405526.1" ; exon_number 1 ; gene_id "DCTN2--RDH16^DCTN2^ENSG00000175203.17" ; gene_name DCTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170124.5" ; havana_transcript "OTTHUMT00000407631.1" ; hgnc_id "HGNC:2712" ; level 2 ; orig_coord_info "chr12,57547028,57547063,-" ; protein_id "ENSP00000408910.3" ; tag dotter_confirmed basic appris_alternative_1 CCDS ; transcript_id "DCTN2--RDH16^ENST00000434715.7" ; transcript_name "DCTN2-201" ; transcript_support_level 5 ; transcript_type protein_coding
DCTN2--RDH16 HAVANA mRNA 1084 16243 . + . FI_gene_label "DCTN2^ENSG00000175203.17" ; ID "DCTN2--RDH16^ENST00000434715.7" ; Parent "DCTN2--RDH16^DCTN2^ENSG00000175203.17" ; ccdsid "CCDS44930.1" ; exon_id "ENSE00002405526.1" ; exon_number 1 ; gene_id "DCTN2--RDH16^DCTN2^ENSG00000175203.17" ; gene_name DCTN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170124.5" ; havana_transcript "OTTHUMT00000407631.1" ; hgnc_id "HGNC:2712" ; level 2 ; orig_coord_info "chr12,57547028,57547063,-" ; protein_id "ENSP00000408910.3" ; tag dotter_confirmed basic appris_alternative_1 CCDS ; transcript_id "DCTN2--RDH16^ENST00000434715.7" ; transcript_name "DCTN2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DGKZ--GHITM HAVANA gene 5321 21761 . + . FI_gene_label "DGKZ^ENSG00000149091.15" ; ID "DGKZ--GHITM^DGKZ^ENSG00000149091.15" ; ccdsid "CCDS55758.1" ; exon_id "ENSE00002229419.1" ; exon_number 1 ; gene_id "DGKZ--GHITM^DGKZ^ENSG00000149091.15" ; gene_name DGKZ ; gene_type protein_coding ; havana_gene "OTTHUMG00000166437.8" ; havana_transcript "OTTHUMT00000474167.1" ; hgnc_id "HGNC:2857" ; level 2 ; orig_coord_info "chr11,46347660,46347820,+" ; protein_id "ENSP00000320340.8" ; tag basic CCDS ; transcript_id "DGKZ--GHITM^ENST00000318201.12" ; transcript_name "DGKZ-201" ; transcript_support_level 2 ; transcript_type protein_coding
DGKZ--GHITM HAVANA mRNA 5321 21761 . + . FI_gene_label "DGKZ^ENSG00000149091.15" ; ID "DGKZ--GHITM^ENST00000318201.12" ; Parent "DGKZ--GHITM^DGKZ^ENSG00000149091.15" ; ccdsid "CCDS55758.1" ; exon_id "ENSE00002229419.1" ; exon_number 1 ; gene_id "DGKZ--GHITM^DGKZ^ENSG00000149091.15" ; gene_name DGKZ ; gene_type protein_coding ; havana_gene "OTTHUMG00000166437.8" ; havana_transcript "OTTHUMT00000474167.1" ; hgnc_id "HGNC:2857" ; level 2 ; orig_coord_info "chr11,46347660,46347820,+" ; protein_id "ENSP00000320340.8" ; tag basic CCDS ; transcript_id "DGKZ--GHITM^ENST00000318201.12" ; transcript_name "DGKZ-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DGKZ--GHITM HAVANA gene 24949 34563 . + . FI_gene_label "GHITM^ENSG00000165678.21" ; ID "DGKZ--GHITM^GHITM^ENSG00000165678.21" ; ccdsid "CCDS41542.1" ; exon_id "ENSE00001147594.4" ; exon_number 2 ; gene_id "DGKZ--GHITM^GHITM^ENSG00000165678.21" ; gene_name GHITM ; gene_type protein_coding ; havana_gene "OTTHUMG00000018637.3" ; havana_transcript "OTTHUMT00000049125.2" ; hgnc_id "HGNC:17281" ; level 2 ; orig_coord_info "chr10,84141501,84141629,+" ; protein_id "ENSP00000361207.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DGKZ--GHITM^ENST00000372134.6" ; transcript_name "GHITM-201" ; transcript_support_level 1 ; transcript_type protein_coding
DGKZ--GHITM HAVANA mRNA 24949 34563 . + . FI_gene_label "GHITM^ENSG00000165678.21" ; ID "DGKZ--GHITM^ENST00000372134.6" ; Parent "DGKZ--GHITM^GHITM^ENSG00000165678.21" ; ccdsid "CCDS41542.1" ; exon_id "ENSE00001147594.4" ; exon_number 2 ; gene_id "DGKZ--GHITM^GHITM^ENSG00000165678.21" ; gene_name GHITM ; gene_type protein_coding ; havana_gene "OTTHUMG00000018637.3" ; havana_transcript "OTTHUMT00000049125.2" ; hgnc_id "HGNC:17281" ; level 2 ; orig_coord_info "chr10,84141501,84141629,+" ; protein_id "ENSP00000361207.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DGKZ--GHITM^ENST00000372134.6" ; transcript_name "GHITM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXOC4--CUX1 HAVANA gene 1006 38283 . + . FI_gene_label "EXOC4^ENSG00000131558.15" ; ID "EXOC4--CUX1^EXOC4^ENSG00000131558.15" ; ccdsid "CCDS5829.1" ; exon_id "ENSE00003845393.1" ; exon_number 1 ; gene_id "EXOC4--CUX1^EXOC4^ENSG00000131558.15" ; gene_name EXOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155259.5" ; havana_transcript "OTTHUMT00000339182.2" ; hgnc_id "HGNC:30389" ; level 2 ; orig_coord_info "chr7,133253102,133253187,+" ; protein_id "ENSP00000253861.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC4--CUX1^ENST00000253861.5" ; transcript_name "EXOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXOC4--CUX1 HAVANA mRNA 1006 38283 . + . FI_gene_label "EXOC4^ENSG00000131558.15" ; ID "EXOC4--CUX1^ENST00000253861.5" ; Parent "EXOC4--CUX1^EXOC4^ENSG00000131558.15" ; ccdsid "CCDS5829.1" ; exon_id "ENSE00003845393.1" ; exon_number 1 ; gene_id "EXOC4--CUX1^EXOC4^ENSG00000131558.15" ; gene_name EXOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155259.5" ; havana_transcript "OTTHUMT00000339182.2" ; hgnc_id "HGNC:30389" ; level 2 ; orig_coord_info "chr7,133253102,133253187,+" ; protein_id "ENSP00000253861.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXOC4--CUX1^ENST00000253861.5" ; transcript_name "EXOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXOC4--CUX1 HAVANA gene 43302 86713 . + . FI_gene_label "CUX1^ENSG00000257923.12" ; ID "EXOC4--CUX1^CUX1^ENSG00000257923.12" ; ccdsid "CCDS5721.1" ; exon_id "ENSE00001332236.4" ; exon_number 1 ; gene_id "EXOC4--CUX1^CUX1^ENSG00000257923.12" ; gene_name CUX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157129.14" ; havana_transcript "OTTHUMT00000347535.3" ; hgnc_id "HGNC:2557" ; level 2 ; orig_coord_info "chr7,101817640,101817669,+" ; protein_id "ENSP00000292535.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "EXOC4--CUX1^ENST00000292535.12" ; transcript_name "CUX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXOC4--CUX1 HAVANA mRNA 43302 86713 . + . FI_gene_label "CUX1^ENSG00000257923.12" ; ID "EXOC4--CUX1^ENST00000292535.12" ; Parent "EXOC4--CUX1^CUX1^ENSG00000257923.12" ; ccdsid "CCDS5721.1" ; exon_id "ENSE00001332236.4" ; exon_number 1 ; gene_id "EXOC4--CUX1^CUX1^ENSG00000257923.12" ; gene_name CUX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157129.14" ; havana_transcript "OTTHUMT00000347535.3" ; hgnc_id "HGNC:2557" ; level 2 ; orig_coord_info "chr7,101817640,101817669,+" ; protein_id "ENSP00000292535.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "EXOC4--CUX1^ENST00000292535.12" ; transcript_name "CUX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM171A1--PREP HAVANA gene 15183 37148 . + . FI_gene_label "PREP^ENSG00000085377.15" ; ID "FAM171A1--PREP^PREP^ENSG00000085377.15" ; exon_id "ENSE00003848141.1" ; exon_number 5 ; gene_id "FAM171A1--PREP^PREP^ENSG00000085377.15" ; gene_name PREP ; gene_type protein_coding ; havana_gene "OTTHUMG00000015297.2" ; havana_transcript "OTTHUMT00000503898.1" ; hgnc_id "HGNC:9358" ; level 2 ; orig_coord_info "chr6,105377386,105377441,-" ; protein_id "ENSP00000358106.4" ; tag basic ; transcript_id "FAM171A1--PREP^ENST00000369110.8" ; transcript_name "PREP-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM171A1--PREP HAVANA mRNA 15183 37148 . + . FI_gene_label "PREP^ENSG00000085377.15" ; ID "FAM171A1--PREP^ENST00000369110.8" ; Parent "FAM171A1--PREP^PREP^ENSG00000085377.15" ; exon_id "ENSE00003848141.1" ; exon_number 5 ; gene_id "FAM171A1--PREP^PREP^ENSG00000085377.15" ; gene_name PREP ; gene_type protein_coding ; havana_gene "OTTHUMG00000015297.2" ; havana_transcript "OTTHUMT00000503898.1" ; hgnc_id "HGNC:9358" ; level 2 ; orig_coord_info "chr6,105377386,105377441,-" ; protein_id "ENSP00000358106.4" ; tag basic ; transcript_id "FAM171A1--PREP^ENST00000369110.8" ; transcript_name "PREP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM171A1--PREP HAVANA gene 1001 12182 . + . FI_gene_label "FAM171A1^ENSG00000148468.17" ; ID "FAM171A1--PREP^FAM171A1^ENSG00000148468.17" ; ccdsid "CCDS31154.1" ; exon_id "ENSE00001923221.2" ; exon_number 1 ; gene_id "FAM171A1--PREP^FAM171A1^ENSG00000148468.17" ; gene_name FAM171A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017732.3" ; havana_transcript "OTTHUMT00000046984.2" ; hgnc_id "HGNC:23522" ; level 2 ; orig_coord_info "chr10,15370956,15371052,-" ; protein_id "ENSP00000367356.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM171A1--PREP^ENST00000378116.9" ; transcript_name "FAM171A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM171A1--PREP HAVANA mRNA 1001 12182 . + . FI_gene_label "FAM171A1^ENSG00000148468.17" ; ID "FAM171A1--PREP^ENST00000378116.9" ; Parent "FAM171A1--PREP^FAM171A1^ENSG00000148468.17" ; ccdsid "CCDS31154.1" ; exon_id "ENSE00001923221.2" ; exon_number 1 ; gene_id "FAM171A1--PREP^FAM171A1^ENSG00000148468.17" ; gene_name FAM171A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017732.3" ; havana_transcript "OTTHUMT00000046984.2" ; hgnc_id "HGNC:23522" ; level 2 ; orig_coord_info "chr10,15370956,15371052,-" ; protein_id "ENSP00000367356.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM171A1--PREP^ENST00000378116.9" ; transcript_name "FAM171A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGD4--AC023796.1 HAVANA gene 3702 28028 . + . FI_gene_label "FGD4^ENSG00000139132.15" ; ID "FGD4--AC023796.1^FGD4^ENSG00000139132.15" ; exon_id "ENSE00003586205.1" ; exon_number 3 ; gene_id "FGD4--AC023796.1^FGD4^ENSG00000139132.15" ; gene_name FGD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137374.7" ; havana_transcript "OTTHUMT00000268019.2" ; hgnc_id "HGNC:19125" ; level 2 ; orig_coord_info "chr12,32576358,32576449,+" ; protein_id "ENSP00000379089.1" ; transcript_id "FGD4--AC023796.1^ENST00000395740.5" ; transcript_name "FGD4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
FGD4--AC023796.1 HAVANA mRNA 3702 28028 . + . FI_gene_label "FGD4^ENSG00000139132.15" ; ID "FGD4--AC023796.1^ENST00000395740.5" ; Parent "FGD4--AC023796.1^FGD4^ENSG00000139132.15" ; exon_id "ENSE00003586205.1" ; exon_number 3 ; gene_id "FGD4--AC023796.1^FGD4^ENSG00000139132.15" ; gene_name FGD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137374.7" ; havana_transcript "OTTHUMT00000268019.2" ; hgnc_id "HGNC:19125" ; level 2 ; orig_coord_info "chr12,32576358,32576449,+" ; protein_id "ENSP00000379089.1" ; transcript_id "FGD4--AC023796.1^ENST00000395740.5" ; transcript_name "FGD4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
FGD4--AC087312.1 HAVANA gene 3702 28028 . + . FI_gene_label "FGD4^ENSG00000139132.15" ; ID "FGD4--AC087312.1^FGD4^ENSG00000139132.15" ; exon_id "ENSE00003586205.1" ; exon_number 3 ; gene_id "FGD4--AC087312.1^FGD4^ENSG00000139132.15" ; gene_name FGD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137374.7" ; havana_transcript "OTTHUMT00000268019.2" ; hgnc_id "HGNC:19125" ; level 2 ; orig_coord_info "chr12,32576358,32576449,+" ; protein_id "ENSP00000379089.1" ; transcript_id "FGD4--AC087312.1^ENST00000395740.5" ; transcript_name "FGD4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
FGD4--AC087312.1 HAVANA mRNA 3702 28028 . + . FI_gene_label "FGD4^ENSG00000139132.15" ; ID "FGD4--AC087312.1^ENST00000395740.5" ; Parent "FGD4--AC087312.1^FGD4^ENSG00000139132.15" ; exon_id "ENSE00003586205.1" ; exon_number 3 ; gene_id "FGD4--AC087312.1^FGD4^ENSG00000139132.15" ; gene_name FGD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137374.7" ; havana_transcript "OTTHUMT00000268019.2" ; hgnc_id "HGNC:19125" ; level 2 ; orig_coord_info "chr12,32576358,32576449,+" ; protein_id "ENSP00000379089.1" ; transcript_id "FGD4--AC087312.1^ENST00000395740.5" ; transcript_name "FGD4-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
FKBP9--CDK14 HAVANA gene 1037 18929 . + . FI_gene_label "FKBP9^ENSG00000122642.11" ; ID "FKBP9--CDK14^FKBP9^ENSG00000122642.11" ; ccdsid "CCDS5439.1" ; exon_id "ENSE00001314638.6" ; exon_number 1 ; gene_id "FKBP9--CDK14^FKBP9^ENSG00000122642.11" ; gene_name FKBP9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097847.4" ; havana_transcript "OTTHUMT00000215137.2" ; hgnc_id "HGNC:3725" ; level 2 ; orig_coord_info "chr7,32957574,32957794,+" ; protein_id "ENSP00000242209.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FKBP9--CDK14^ENST00000242209.9" ; transcript_name "FKBP9-201" ; transcript_support_level 1 ; transcript_type protein_coding
FKBP9--CDK14 HAVANA mRNA 1037 18929 . + . FI_gene_label "FKBP9^ENSG00000122642.11" ; ID "FKBP9--CDK14^ENST00000242209.9" ; Parent "FKBP9--CDK14^FKBP9^ENSG00000122642.11" ; ccdsid "CCDS5439.1" ; exon_id "ENSE00001314638.6" ; exon_number 1 ; gene_id "FKBP9--CDK14^FKBP9^ENSG00000122642.11" ; gene_name FKBP9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097847.4" ; havana_transcript "OTTHUMT00000215137.2" ; hgnc_id "HGNC:3725" ; level 2 ; orig_coord_info "chr7,32957574,32957794,+" ; protein_id "ENSP00000242209.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FKBP9--CDK14^ENST00000242209.9" ; transcript_name "FKBP9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FKBP9--CDK14 HAVANA gene 30957 52947 . + . FI_gene_label "CDK14^ENSG00000058091.17" ; ID "FKBP9--CDK14^CDK14^ENSG00000058091.17" ; ccdsid "CCDS5619.1" ; exon_id "ENSE00002307996.1" ; exon_number 1 ; gene_id "FKBP9--CDK14^CDK14^ENSG00000058091.17" ; gene_name CDK14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023649.11" ; havana_transcript "OTTHUMT00000140389.1" ; hgnc_id "HGNC:8883" ; level 2 ; orig_coord_info "chr7,90709542,90709610,+" ; protein_id "ENSP00000265741.3" ; tag basic CCDS ; transcript_id "FKBP9--CDK14^ENST00000265741.7" ; transcript_name "CDK14-201" ; transcript_support_level 1 ; transcript_type protein_coding
FKBP9--CDK14 HAVANA mRNA 30957 52947 . + . FI_gene_label "CDK14^ENSG00000058091.17" ; ID "FKBP9--CDK14^ENST00000265741.7" ; Parent "FKBP9--CDK14^CDK14^ENSG00000058091.17" ; ccdsid "CCDS5619.1" ; exon_id "ENSE00002307996.1" ; exon_number 1 ; gene_id "FKBP9--CDK14^CDK14^ENSG00000058091.17" ; gene_name CDK14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023649.11" ; havana_transcript "OTTHUMT00000140389.1" ; hgnc_id "HGNC:8883" ; level 2 ; orig_coord_info "chr7,90709542,90709610,+" ; protein_id "ENSP00000265741.3" ; tag basic CCDS ; transcript_id "FKBP9--CDK14^ENST00000265741.7" ; transcript_name "CDK14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FOXJ3--AL512638.2 HAVANA gene 1643 21370 . + . FI_gene_label "FOXJ3^ENSG00000198815.9" ; ID "FOXJ3--AL512638.2^FOXJ3^ENSG00000198815.9" ; ccdsid "CCDS30689.1" ; exon_id "ENSE00003890108.1" ; exon_number 2 ; gene_id "FOXJ3--AL512638.2^FOXJ3^ENSG00000198815.9" ; gene_name FOXJ3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007026.5" ; havana_transcript "OTTHUMT00000504181.2" ; hgnc_id "HGNC:29178" ; level 2 ; orig_coord_info "chr1,42311050,42311093,-" ; protein_id "ENSP00000354620.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "FOXJ3--AL512638.2^ENST00000361346.6" ; transcript_name "FOXJ3-201" ; transcript_support_level 1 ; transcript_type protein_coding
FOXJ3--AL512638.2 HAVANA mRNA 1643 21370 . + . FI_gene_label "FOXJ3^ENSG00000198815.9" ; ID "FOXJ3--AL512638.2^ENST00000361346.6" ; Parent "FOXJ3--AL512638.2^FOXJ3^ENSG00000198815.9" ; ccdsid "CCDS30689.1" ; exon_id "ENSE00003890108.1" ; exon_number 2 ; gene_id "FOXJ3--AL512638.2^FOXJ3^ENSG00000198815.9" ; gene_name FOXJ3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007026.5" ; havana_transcript "OTTHUMT00000504181.2" ; hgnc_id "HGNC:29178" ; level 2 ; orig_coord_info "chr1,42311050,42311093,-" ; protein_id "ENSP00000354620.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "FOXJ3--AL512638.2^ENST00000361346.6" ; transcript_name "FOXJ3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FOXJ3--ELOCP20 HAVANA gene 1643 21370 . + . FI_gene_label "FOXJ3^ENSG00000198815.9" ; ID "FOXJ3--ELOCP20^FOXJ3^ENSG00000198815.9" ; ccdsid "CCDS30689.1" ; exon_id "ENSE00003890108.1" ; exon_number 2 ; gene_id "FOXJ3--ELOCP20^FOXJ3^ENSG00000198815.9" ; gene_name FOXJ3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007026.5" ; havana_transcript "OTTHUMT00000504181.2" ; hgnc_id "HGNC:29178" ; level 2 ; orig_coord_info "chr1,42311050,42311093,-" ; protein_id "ENSP00000354620.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "FOXJ3--ELOCP20^ENST00000361346.6" ; transcript_name "FOXJ3-201" ; transcript_support_level 1 ; transcript_type protein_coding
FOXJ3--ELOCP20 HAVANA mRNA 1643 21370 . + . FI_gene_label "FOXJ3^ENSG00000198815.9" ; ID "FOXJ3--ELOCP20^ENST00000361346.6" ; Parent "FOXJ3--ELOCP20^FOXJ3^ENSG00000198815.9" ; ccdsid "CCDS30689.1" ; exon_id "ENSE00003890108.1" ; exon_number 2 ; gene_id "FOXJ3--ELOCP20^FOXJ3^ENSG00000198815.9" ; gene_name FOXJ3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007026.5" ; havana_transcript "OTTHUMT00000504181.2" ; hgnc_id "HGNC:29178" ; level 2 ; orig_coord_info "chr1,42311050,42311093,-" ; protein_id "ENSP00000354620.1" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "FOXJ3--ELOCP20^ENST00000361346.6" ; transcript_name "FOXJ3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FRK--AL356967.1 HAVANA gene 1001 20613 . + . FI_gene_label "FRK^ENSG00000111816.8" ; ID "FRK--AL356967.1^FRK^ENSG00000111816.8" ; ccdsid "CCDS5103.1" ; exon_id "ENSE00001447601.2" ; exon_number 1 ; gene_id "FRK--AL356967.1^FRK^ENSG00000111816.8" ; gene_name FRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015424.3" ; havana_transcript "OTTHUMT00000041924.3" ; hgnc_id "HGNC:3955" ; level 2 ; orig_coord_info "chr6,116059968,116060311,-" ; protein_id "ENSP00000476145.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FRK--AL356967.1^ENST00000606080.2" ; transcript_name "FRK-201" ; transcript_support_level 1 ; transcript_type protein_coding
FRK--AL356967.1 HAVANA mRNA 1001 20613 . + . FI_gene_label "FRK^ENSG00000111816.8" ; ID "FRK--AL356967.1^ENST00000606080.2" ; Parent "FRK--AL356967.1^FRK^ENSG00000111816.8" ; ccdsid "CCDS5103.1" ; exon_id "ENSE00001447601.2" ; exon_number 1 ; gene_id "FRK--AL356967.1^FRK^ENSG00000111816.8" ; gene_name FRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015424.3" ; havana_transcript "OTTHUMT00000041924.3" ; hgnc_id "HGNC:3955" ; level 2 ; orig_coord_info "chr6,116059968,116060311,-" ; protein_id "ENSP00000476145.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FRK--AL356967.1^ENST00000606080.2" ; transcript_name "FRK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FRK--HACE1 HAVANA gene 23614 54218 . + . FI_gene_label "HACE1^ENSG00000085382.12" ; ID "FRK--HACE1^HACE1^ENSG00000085382.12" ; ccdsid "CCDS5050.1" ; exon_id "ENSE00001298139.3" ; exon_number 1 ; gene_id "FRK--HACE1^HACE1^ENSG00000085382.12" ; gene_name HACE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015287.5" ; havana_transcript "OTTHUMT00000041643.3" ; hgnc_id "HGNC:21033" ; level 2 ; orig_coord_info "chr6,104859567,104859642,-" ; protein_id "ENSP00000262903.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FRK--HACE1^ENST00000262903.9" ; transcript_name "HACE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FRK--HACE1 HAVANA mRNA 23614 54218 . + . FI_gene_label "HACE1^ENSG00000085382.12" ; ID "FRK--HACE1^ENST00000262903.9" ; Parent "FRK--HACE1^HACE1^ENSG00000085382.12" ; ccdsid "CCDS5050.1" ; exon_id "ENSE00001298139.3" ; exon_number 1 ; gene_id "FRK--HACE1^HACE1^ENSG00000085382.12" ; gene_name HACE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015287.5" ; havana_transcript "OTTHUMT00000041643.3" ; hgnc_id "HGNC:21033" ; level 2 ; orig_coord_info "chr6,104859567,104859642,-" ; protein_id "ENSP00000262903.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FRK--HACE1^ENST00000262903.9" ; transcript_name "HACE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FRK--HACE1 HAVANA gene 1001 20613 . + . FI_gene_label "FRK^ENSG00000111816.8" ; ID "FRK--HACE1^FRK^ENSG00000111816.8" ; ccdsid "CCDS5103.1" ; exon_id "ENSE00001447601.2" ; exon_number 1 ; gene_id "FRK--HACE1^FRK^ENSG00000111816.8" ; gene_name FRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015424.3" ; havana_transcript "OTTHUMT00000041924.3" ; hgnc_id "HGNC:3955" ; level 2 ; orig_coord_info "chr6,116059968,116060311,-" ; protein_id "ENSP00000476145.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FRK--HACE1^ENST00000606080.2" ; transcript_name "FRK-201" ; transcript_support_level 1 ; transcript_type protein_coding
FRK--HACE1 HAVANA mRNA 1001 20613 . + . FI_gene_label "FRK^ENSG00000111816.8" ; ID "FRK--HACE1^ENST00000606080.2" ; Parent "FRK--HACE1^FRK^ENSG00000111816.8" ; ccdsid "CCDS5103.1" ; exon_id "ENSE00001447601.2" ; exon_number 1 ; gene_id "FRK--HACE1^FRK^ENSG00000111816.8" ; gene_name FRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015424.3" ; havana_transcript "OTTHUMT00000041924.3" ; hgnc_id "HGNC:3955" ; level 2 ; orig_coord_info "chr6,116059968,116060311,-" ; protein_id "ENSP00000476145.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FRK--HACE1^ENST00000606080.2" ; transcript_name "FRK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GIGYF2--EIF4E2 HAVANA gene 58703 68161 . + . FI_gene_label "EIF4E2^ENSG00000135930.14" ; ID "GIGYF2--EIF4E2^EIF4E2^ENSG00000135930.14" ; ccdsid "CCDS2496.1" ; exon_id "ENSE00001552964.1" ; exon_number 1 ; gene_id "GIGYF2--EIF4E2^EIF4E2^ENSG00000135930.14" ; gene_name EIF4E2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133256.4" ; havana_transcript "OTTHUMT00000257033.3" ; hgnc_id "HGNC:3293" ; level 2 ; orig_coord_info "chr2,232550725,232550744,+" ; protein_id "ENSP00000258416.3" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "GIGYF2--EIF4E2^ENST00000258416.8" ; transcript_name "EIF4E2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GIGYF2--EIF4E2 HAVANA mRNA 58703 68161 . + . FI_gene_label "EIF4E2^ENSG00000135930.14" ; ID "GIGYF2--EIF4E2^ENST00000258416.8" ; Parent "GIGYF2--EIF4E2^EIF4E2^ENSG00000135930.14" ; ccdsid "CCDS2496.1" ; exon_id "ENSE00001552964.1" ; exon_number 1 ; gene_id "GIGYF2--EIF4E2^EIF4E2^ENSG00000135930.14" ; gene_name EIF4E2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133256.4" ; havana_transcript "OTTHUMT00000257033.3" ; hgnc_id "HGNC:3293" ; level 2 ; orig_coord_info "chr2,232550725,232550744,+" ; protein_id "ENSP00000258416.3" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "GIGYF2--EIF4E2^ENST00000258416.8" ; transcript_name "EIF4E2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GIGYF2--EIF4E2 HAVANA gene 1033 55687 . + . FI_gene_label "GIGYF2^ENSG00000204120.16" ; ID "GIGYF2--EIF4E2^GIGYF2^ENSG00000204120.16" ; ccdsid "CCDS33401.1" ; exon_id "ENSE00003521038.1" ; exon_number 3 ; gene_id "GIGYF2--EIF4E2^GIGYF2^ENSG00000204120.16" ; gene_name GIGYF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153237.9" ; havana_transcript "OTTHUMT00000330321.2" ; hgnc_id "HGNC:11960" ; level 2 ; orig_coord_info "chr2,232735198,232735238,+" ; protein_id "ENSP00000362664.5" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "GIGYF2--EIF4E2^ENST00000373563.9" ; transcript_name "GIGYF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
GIGYF2--EIF4E2 HAVANA mRNA 1033 55687 . + . FI_gene_label "GIGYF2^ENSG00000204120.16" ; ID "GIGYF2--EIF4E2^ENST00000373563.9" ; Parent "GIGYF2--EIF4E2^GIGYF2^ENSG00000204120.16" ; ccdsid "CCDS33401.1" ; exon_id "ENSE00003521038.1" ; exon_number 3 ; gene_id "GIGYF2--EIF4E2^GIGYF2^ENSG00000204120.16" ; gene_name GIGYF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153237.9" ; havana_transcript "OTTHUMT00000330321.2" ; hgnc_id "HGNC:11960" ; level 2 ; orig_coord_info "chr2,232735198,232735238,+" ; protein_id "ENSP00000362664.5" ; tag alternative_5_UTR basic MANE_Select appris_principal_2 CCDS ; transcript_id "GIGYF2--EIF4E2^ENST00000373563.9" ; transcript_name "GIGYF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HEATR6--AC025048.6 HAVANA gene 1002 25080 . + . FI_gene_label "HEATR6^ENSG00000068097.15" ; ID "HEATR6--AC025048.6^HEATR6^ENSG00000068097.15" ; ccdsid "CCDS11623.1" ; exon_id "ENSE00003633760.1" ; exon_number 1 ; gene_id "HEATR6--AC025048.6^HEATR6^ENSG00000068097.15" ; gene_name HEATR6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179981.3" ; havana_transcript "OTTHUMT00000449165.2" ; hgnc_id "HGNC:24076" ; level 2 ; orig_coord_info "chr17,60078696,60078914,-" ; protein_id "ENSP00000184956.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "HEATR6--AC025048.6^ENST00000184956.11" ; transcript_name "HEATR6-201" ; transcript_support_level 1 ; transcript_type protein_coding
HEATR6--AC025048.6 HAVANA mRNA 1002 25080 . + . FI_gene_label "HEATR6^ENSG00000068097.15" ; ID "HEATR6--AC025048.6^ENST00000184956.11" ; Parent "HEATR6--AC025048.6^HEATR6^ENSG00000068097.15" ; ccdsid "CCDS11623.1" ; exon_id "ENSE00003633760.1" ; exon_number 1 ; gene_id "HEATR6--AC025048.6^HEATR6^ENSG00000068097.15" ; gene_name HEATR6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179981.3" ; havana_transcript "OTTHUMT00000449165.2" ; hgnc_id "HGNC:24076" ; level 2 ; orig_coord_info "chr17,60078696,60078914,-" ; protein_id "ENSP00000184956.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "HEATR6--AC025048.6^ENST00000184956.11" ; transcript_name "HEATR6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HEATR6--WFDC21P HAVANA gene 1002 25080 . + . FI_gene_label "HEATR6^ENSG00000068097.15" ; ID "HEATR6--WFDC21P^HEATR6^ENSG00000068097.15" ; ccdsid "CCDS11623.1" ; exon_id "ENSE00003633760.1" ; exon_number 1 ; gene_id "HEATR6--WFDC21P^HEATR6^ENSG00000068097.15" ; gene_name HEATR6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179981.3" ; havana_transcript "OTTHUMT00000449165.2" ; hgnc_id "HGNC:24076" ; level 2 ; orig_coord_info "chr17,60078696,60078914,-" ; protein_id "ENSP00000184956.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "HEATR6--WFDC21P^ENST00000184956.11" ; transcript_name "HEATR6-201" ; transcript_support_level 1 ; transcript_type protein_coding
HEATR6--WFDC21P HAVANA mRNA 1002 25080 . + . FI_gene_label "HEATR6^ENSG00000068097.15" ; ID "HEATR6--WFDC21P^ENST00000184956.11" ; Parent "HEATR6--WFDC21P^HEATR6^ENSG00000068097.15" ; ccdsid "CCDS11623.1" ; exon_id "ENSE00003633760.1" ; exon_number 1 ; gene_id "HEATR6--WFDC21P^HEATR6^ENSG00000068097.15" ; gene_name HEATR6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179981.3" ; havana_transcript "OTTHUMT00000449165.2" ; hgnc_id "HGNC:24076" ; level 2 ; orig_coord_info "chr17,60078696,60078914,-" ; protein_id "ENSP00000184956.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "HEATR6--WFDC21P^ENST00000184956.11" ; transcript_name "HEATR6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HIVEP3--MUC19 HAVANA gene 2120 29949 . + . FI_gene_label "HIVEP3^ENSG00000127124.16" ; ID "HIVEP3--MUC19^HIVEP3^ENSG00000127124.16" ; ccdsid "CCDS463.1" ; exon_id "ENSE00001146673.3" ; exon_number 4 ; gene_id "HIVEP3--MUC19^HIVEP3^ENSG00000127124.16" ; gene_name HIVEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192539.4" ; havana_transcript "OTTHUMT00000016978.2" ; hgnc_id "HGNC:13561" ; level 2 ; orig_coord_info "chr1,41579737,41584797,-" ; protein_id "ENSP00000361664.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "HIVEP3--MUC19^ENST00000372583.6" ; transcript_name "HIVEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
HIVEP3--MUC19 HAVANA mRNA 2120 29949 . + . FI_gene_label "HIVEP3^ENSG00000127124.16" ; ID "HIVEP3--MUC19^ENST00000372583.6" ; Parent "HIVEP3--MUC19^HIVEP3^ENSG00000127124.16" ; ccdsid "CCDS463.1" ; exon_id "ENSE00001146673.3" ; exon_number 4 ; gene_id "HIVEP3--MUC19^HIVEP3^ENSG00000127124.16" ; gene_name HIVEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192539.4" ; havana_transcript "OTTHUMT00000016978.2" ; hgnc_id "HGNC:13561" ; level 2 ; orig_coord_info "chr1,41579737,41584797,-" ; protein_id "ENSP00000361664.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "HIVEP3--MUC19^ENST00000372583.6" ; transcript_name "HIVEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HIVEP3--MUC19 HAVANA gene 120384 132851 . + . FI_gene_label "MUC19^ENSG00000205592.15" ; ID "HIVEP3--MUC19^MUC19^ENSG00000205592.15" ; exon_id "ENSE00003815601.1" ; exon_number 1 ; gene_id "HIVEP3--MUC19^MUC19^ENSG00000205592.15" ; gene_name MUC19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000060732.36" ; havana_transcript "OTTHUMT00000134357.5" ; hgnc_id "HGNC:14362" ; level 2 ; orig_coord_info "chr12,40528057,40528110,+" ; protein_id "ENSP00000495398.1" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF appris_alternative_2 ; transcript_id "HIVEP3--MUC19^ENST00000424466.6" ; transcript_name "MUC19-203" ; transcript_support_level 5 ; transcript_type protein_coding
HIVEP3--MUC19 HAVANA mRNA 120384 132851 . + . FI_gene_label "MUC19^ENSG00000205592.15" ; ID "HIVEP3--MUC19^ENST00000424466.6" ; Parent "HIVEP3--MUC19^MUC19^ENSG00000205592.15" ; exon_id "ENSE00003815601.1" ; exon_number 1 ; gene_id "HIVEP3--MUC19^MUC19^ENSG00000205592.15" ; gene_name MUC19 ; gene_type protein_coding ; havana_gene "OTTHUMG00000060732.36" ; havana_transcript "OTTHUMT00000134357.5" ; hgnc_id "HGNC:14362" ; level 2 ; orig_coord_info "chr12,40528057,40528110,+" ; protein_id "ENSP00000495398.1" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF appris_alternative_2 ; transcript_id "HIVEP3--MUC19^ENST00000424466.6" ; transcript_name "MUC19-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
HIVEP3--ST3GAL3-AS1 HAVANA gene 2120 29949 . + . FI_gene_label "HIVEP3^ENSG00000127124.16" ; ID "HIVEP3--ST3GAL3-AS1^HIVEP3^ENSG00000127124.16" ; ccdsid "CCDS463.1" ; exon_id "ENSE00001146673.3" ; exon_number 4 ; gene_id "HIVEP3--ST3GAL3-AS1^HIVEP3^ENSG00000127124.16" ; gene_name HIVEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192539.4" ; havana_transcript "OTTHUMT00000016978.2" ; hgnc_id "HGNC:13561" ; level 2 ; orig_coord_info "chr1,41579737,41584797,-" ; protein_id "ENSP00000361664.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "HIVEP3--ST3GAL3-AS1^ENST00000372583.6" ; transcript_name "HIVEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
HIVEP3--ST3GAL3-AS1 HAVANA mRNA 2120 29949 . + . FI_gene_label "HIVEP3^ENSG00000127124.16" ; ID "HIVEP3--ST3GAL3-AS1^ENST00000372583.6" ; Parent "HIVEP3--ST3GAL3-AS1^HIVEP3^ENSG00000127124.16" ; ccdsid "CCDS463.1" ; exon_id "ENSE00001146673.3" ; exon_number 4 ; gene_id "HIVEP3--ST3GAL3-AS1^HIVEP3^ENSG00000127124.16" ; gene_name HIVEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192539.4" ; havana_transcript "OTTHUMT00000016978.2" ; hgnc_id "HGNC:13561" ; level 2 ; orig_coord_info "chr1,41579737,41584797,-" ; protein_id "ENSP00000361664.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "HIVEP3--ST3GAL3-AS1^ENST00000372583.6" ; transcript_name "HIVEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HIVEP3--ST3GAL3 HAVANA gene 34155 76559 . + . FI_gene_label "ST3GAL3^ENSG00000126091.21" ; ID "HIVEP3--ST3GAL3^ST3GAL3^ENSG00000126091.21" ; ccdsid "CCDS493.1" ; exon_id "ENSE00001188334.5" ; exon_number 2 ; gene_id "HIVEP3--ST3GAL3^ST3GAL3^ENSG00000126091.21" ; gene_name ST3GAL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007561.18" ; havana_transcript "OTTHUMT00000019967.2" ; hgnc_id "HGNC:10866" ; level 2 ; orig_coord_info "chr1,43736263,43736425,+" ; protein_id "ENSP00000262915.3" ; tag basic CCDS ; transcript_id "HIVEP3--ST3GAL3^ENST00000262915.8" ; transcript_name "ST3GAL3-201" ; transcript_support_level 5 ; transcript_type protein_coding
HIVEP3--ST3GAL3 HAVANA mRNA 34155 76559 . + . FI_gene_label "ST3GAL3^ENSG00000126091.21" ; ID "HIVEP3--ST3GAL3^ENST00000262915.8" ; Parent "HIVEP3--ST3GAL3^ST3GAL3^ENSG00000126091.21" ; ccdsid "CCDS493.1" ; exon_id "ENSE00001188334.5" ; exon_number 2 ; gene_id "HIVEP3--ST3GAL3^ST3GAL3^ENSG00000126091.21" ; gene_name ST3GAL3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007561.18" ; havana_transcript "OTTHUMT00000019967.2" ; hgnc_id "HGNC:10866" ; level 2 ; orig_coord_info "chr1,43736263,43736425,+" ; protein_id "ENSP00000262915.3" ; tag basic CCDS ; transcript_id "HIVEP3--ST3GAL3^ENST00000262915.8" ; transcript_name "ST3GAL3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
HIVEP3--ST3GAL3 HAVANA gene 2120 29949 . + . FI_gene_label "HIVEP3^ENSG00000127124.16" ; ID "HIVEP3--ST3GAL3^HIVEP3^ENSG00000127124.16" ; ccdsid "CCDS463.1" ; exon_id "ENSE00001146673.3" ; exon_number 4 ; gene_id "HIVEP3--ST3GAL3^HIVEP3^ENSG00000127124.16" ; gene_name HIVEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192539.4" ; havana_transcript "OTTHUMT00000016978.2" ; hgnc_id "HGNC:13561" ; level 2 ; orig_coord_info "chr1,41579737,41584797,-" ; protein_id "ENSP00000361664.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "HIVEP3--ST3GAL3^ENST00000372583.6" ; transcript_name "HIVEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
HIVEP3--ST3GAL3 HAVANA mRNA 2120 29949 . + . FI_gene_label "HIVEP3^ENSG00000127124.16" ; ID "HIVEP3--ST3GAL3^ENST00000372583.6" ; Parent "HIVEP3--ST3GAL3^HIVEP3^ENSG00000127124.16" ; ccdsid "CCDS463.1" ; exon_id "ENSE00001146673.3" ; exon_number 4 ; gene_id "HIVEP3--ST3GAL3^HIVEP3^ENSG00000127124.16" ; gene_name HIVEP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192539.4" ; havana_transcript "OTTHUMT00000016978.2" ; hgnc_id "HGNC:13561" ; level 2 ; orig_coord_info "chr1,41579737,41584797,-" ; protein_id "ENSP00000361664.1" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "HIVEP3--ST3GAL3^ENST00000372583.6" ; transcript_name "HIVEP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HTT--LINC01899 HAVANA gene 6384 80751 . + . FI_gene_label "HTT^ENSG00000197386.13" ; ID "HTT--LINC01899^HTT^ENSG00000197386.13" ; ccdsid "CCDS43206.1" ; exon_id "ENSE00001251499.4" ; exon_number 1 ; gene_id "HTT--LINC01899^HTT^ENSG00000197386.13" ; gene_name HTT ; gene_type protein_coding ; havana_gene "OTTHUMG00000159916.7" ; havana_transcript "OTTHUMT00000358234.4" ; hgnc_id "HGNC:4851" ; level 2 ; orig_coord_info "chr4,3074826,3075088,+" ; protein_id "ENSP00000347184.5" ; tag basic appris_principal_2 CCDS ; transcript_id "HTT--LINC01899^ENST00000355072.10" ; transcript_name "HTT-201" ; transcript_support_level 1 ; transcript_type protein_coding
HTT--LINC01899 HAVANA mRNA 6384 80751 . + . FI_gene_label "HTT^ENSG00000197386.13" ; ID "HTT--LINC01899^ENST00000355072.10" ; Parent "HTT--LINC01899^HTT^ENSG00000197386.13" ; ccdsid "CCDS43206.1" ; exon_id "ENSE00001251499.4" ; exon_number 1 ; gene_id "HTT--LINC01899^HTT^ENSG00000197386.13" ; gene_name HTT ; gene_type protein_coding ; havana_gene "OTTHUMG00000159916.7" ; havana_transcript "OTTHUMT00000358234.4" ; hgnc_id "HGNC:4851" ; level 2 ; orig_coord_info "chr4,3074826,3075088,+" ; protein_id "ENSP00000347184.5" ; tag basic appris_principal_2 CCDS ; transcript_id "HTT--LINC01899^ENST00000355072.10" ; transcript_name "HTT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IL2RA--CELF2 HAVANA gene 1081 10224 . + . FI_gene_label "IL2RA^ENSG00000134460.18" ; ID "IL2RA--CELF2^IL2RA^ENSG00000134460.18" ; exon_id "ENSE00001877625.1" ; exon_number 1 ; gene_id "IL2RA--CELF2^IL2RA^ENSG00000134460.18" ; gene_name IL2RA ; gene_type protein_coding ; havana_gene "OTTHUMG00000017616.5" ; havana_transcript "OTTHUMT00000046630.1" ; hgnc_id "HGNC:6008" ; level 2 ; orig_coord_info "chr10,6062088,6062151,-" ; protein_id "ENSP00000256876.6" ; tag basic appris_alternative_2 ; transcript_id "IL2RA--CELF2^ENST00000256876.10" ; transcript_name "IL2RA-201" ; transcript_support_level 5 ; transcript_type protein_coding
IL2RA--CELF2 HAVANA mRNA 1081 10224 . + . FI_gene_label "IL2RA^ENSG00000134460.18" ; ID "IL2RA--CELF2^ENST00000256876.10" ; Parent "IL2RA--CELF2^IL2RA^ENSG00000134460.18" ; exon_id "ENSE00001877625.1" ; exon_number 1 ; gene_id "IL2RA--CELF2^IL2RA^ENSG00000134460.18" ; gene_name IL2RA ; gene_type protein_coding ; havana_gene "OTTHUMG00000017616.5" ; havana_transcript "OTTHUMT00000046630.1" ; hgnc_id "HGNC:6008" ; level 2 ; orig_coord_info "chr10,6062088,6062151,-" ; protein_id "ENSP00000256876.6" ; tag basic appris_alternative_2 ; transcript_id "IL2RA--CELF2^ENST00000256876.10" ; transcript_name "IL2RA-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
IL2RA--CELF2 HAVANA gene 22402 35982 . + . FI_gene_label "CELF2^ENSG00000048740.18" ; ID "IL2RA--CELF2^CELF2^ENSG00000048740.18" ; exon_id "ENSE00003564082.1" ; exon_number 1 ; gene_id "IL2RA--CELF2^CELF2^ENSG00000048740.18" ; gene_name CELF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017668.8" ; havana_transcript "OTTHUMT00000046760.2" ; hgnc_id "HGNC:2550" ; level 2 ; orig_coord_info "chr10,11165505,11165682,+" ; protein_id "ENSP00000346971.3" ; tag basic ; transcript_id "IL2RA--CELF2^ENST00000354897.3" ; transcript_name "CELF2-201" ; transcript_support_level 5 ; transcript_type protein_coding
IL2RA--CELF2 HAVANA mRNA 22402 35982 . + . FI_gene_label "CELF2^ENSG00000048740.18" ; ID "IL2RA--CELF2^ENST00000354897.3" ; Parent "IL2RA--CELF2^CELF2^ENSG00000048740.18" ; exon_id "ENSE00003564082.1" ; exon_number 1 ; gene_id "IL2RA--CELF2^CELF2^ENSG00000048740.18" ; gene_name CELF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017668.8" ; havana_transcript "OTTHUMT00000046760.2" ; hgnc_id "HGNC:2550" ; level 2 ; orig_coord_info "chr10,11165505,11165682,+" ; protein_id "ENSP00000346971.3" ; tag basic ; transcript_id "IL2RA--CELF2^ENST00000354897.3" ; transcript_name "CELF2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
KIAA1217--LINC02664 HAVANA gene 14537 34207 . + . FI_gene_label "KIAA1217^ENSG00000120549.18" ; ID "KIAA1217--LINC02664^KIAA1217^ENSG00000120549.18" ; ccdsid "CCDS60504.1" ; exon_id "ENSE00003758710.1" ; exon_number 2 ; gene_id "KIAA1217--LINC02664^KIAA1217^ENSG00000120549.18" ; gene_name KIAA1217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017824.8" ; havana_transcript "OTTHUMT00000047220.2" ; hgnc_id "HGNC:25428" ; level 1 ; orig_coord_info "chr10,24473228,24474060,+" ; protein_id "ENSP00000302343.6" ; tag basic appris_alternative_2 exp_conf CCDS ; transcript_id "KIAA1217--LINC02664^ENST00000307544.10" ; transcript_name "KIAA1217-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIAA1217--LINC02664 HAVANA mRNA 14537 34207 . + . FI_gene_label "KIAA1217^ENSG00000120549.18" ; ID "KIAA1217--LINC02664^ENST00000307544.10" ; Parent "KIAA1217--LINC02664^KIAA1217^ENSG00000120549.18" ; ccdsid "CCDS60504.1" ; exon_id "ENSE00003758710.1" ; exon_number 2 ; gene_id "KIAA1217--LINC02664^KIAA1217^ENSG00000120549.18" ; gene_name KIAA1217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017824.8" ; havana_transcript "OTTHUMT00000047220.2" ; hgnc_id "HGNC:25428" ; level 1 ; orig_coord_info "chr10,24473228,24474060,+" ; protein_id "ENSP00000302343.6" ; tag basic appris_alternative_2 exp_conf CCDS ; transcript_id "KIAA1217--LINC02664^ENST00000307544.10" ; transcript_name "KIAA1217-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIAA1217--ZEB1-AS1 HAVANA gene 14537 34207 . + . FI_gene_label "KIAA1217^ENSG00000120549.18" ; ID "KIAA1217--ZEB1-AS1^KIAA1217^ENSG00000120549.18" ; ccdsid "CCDS60504.1" ; exon_id "ENSE00003758710.1" ; exon_number 2 ; gene_id "KIAA1217--ZEB1-AS1^KIAA1217^ENSG00000120549.18" ; gene_name KIAA1217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017824.8" ; havana_transcript "OTTHUMT00000047220.2" ; hgnc_id "HGNC:25428" ; level 1 ; orig_coord_info "chr10,24473228,24474060,+" ; protein_id "ENSP00000302343.6" ; tag basic appris_alternative_2 exp_conf CCDS ; transcript_id "KIAA1217--ZEB1-AS1^ENST00000307544.10" ; transcript_name "KIAA1217-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIAA1217--ZEB1-AS1 HAVANA mRNA 14537 34207 . + . FI_gene_label "KIAA1217^ENSG00000120549.18" ; ID "KIAA1217--ZEB1-AS1^ENST00000307544.10" ; Parent "KIAA1217--ZEB1-AS1^KIAA1217^ENSG00000120549.18" ; ccdsid "CCDS60504.1" ; exon_id "ENSE00003758710.1" ; exon_number 2 ; gene_id "KIAA1217--ZEB1-AS1^KIAA1217^ENSG00000120549.18" ; gene_name KIAA1217 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017824.8" ; havana_transcript "OTTHUMT00000047220.2" ; hgnc_id "HGNC:25428" ; level 1 ; orig_coord_info "chr10,24473228,24474060,+" ; protein_id "ENSP00000302343.6" ; tag basic appris_alternative_2 exp_conf CCDS ; transcript_id "KIAA1217--ZEB1-AS1^ENST00000307544.10" ; transcript_name "KIAA1217-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLHDC2--SOS2 HAVANA gene 16269 44737 . + . FI_gene_label "SOS2^ENSG00000100485.12" ; ID "KLHDC2--SOS2^SOS2^ENSG00000100485.12" ; ccdsid "CCDS9697.1" ; exon_id "ENSE00002525812.2" ; exon_number 1 ; gene_id "KLHDC2--SOS2^SOS2^ENSG00000100485.12" ; gene_name SOS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140292.5" ; havana_transcript "OTTHUMT00000276878.4" ; hgnc_id "HGNC:11188" ; level 2 ; orig_coord_info "chr14,50231197,50231283,-" ; protein_id "ENSP00000216373.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLHDC2--SOS2^ENST00000216373.10" ; transcript_name "SOS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLHDC2--SOS2 HAVANA mRNA 16269 44737 . + . FI_gene_label "SOS2^ENSG00000100485.12" ; ID "KLHDC2--SOS2^ENST00000216373.10" ; Parent "KLHDC2--SOS2^SOS2^ENSG00000100485.12" ; ccdsid "CCDS9697.1" ; exon_id "ENSE00002525812.2" ; exon_number 1 ; gene_id "KLHDC2--SOS2^SOS2^ENSG00000100485.12" ; gene_name SOS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140292.5" ; havana_transcript "OTTHUMT00000276878.4" ; hgnc_id "HGNC:11188" ; level 2 ; orig_coord_info "chr14,50231197,50231283,-" ; protein_id "ENSP00000216373.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLHDC2--SOS2^ENST00000216373.10" ; transcript_name "SOS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLHDC2--SOS2 HAVANA gene 1024 13268 . + . FI_gene_label "KLHDC2^ENSG00000165516.11" ; ID "KLHDC2--SOS2^KLHDC2^ENSG00000165516.11" ; ccdsid "CCDS9693.1" ; exon_id "ENSE00001093727.8" ; exon_number 1 ; gene_id "KLHDC2--SOS2^KLHDC2^ENSG00000165516.11" ; gene_name KLHDC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140288.5" ; havana_transcript "OTTHUMT00000276869.4" ; hgnc_id "HGNC:20231" ; level 2 ; orig_coord_info "chr14,49768469,49768621,+" ; protein_id "ENSP00000298307.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLHDC2--SOS2^ENST00000298307.10" ; transcript_name "KLHDC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLHDC2--SOS2 HAVANA mRNA 1024 13268 . + . FI_gene_label "KLHDC2^ENSG00000165516.11" ; ID "KLHDC2--SOS2^ENST00000298307.10" ; Parent "KLHDC2--SOS2^KLHDC2^ENSG00000165516.11" ; ccdsid "CCDS9693.1" ; exon_id "ENSE00001093727.8" ; exon_number 1 ; gene_id "KLHDC2--SOS2^KLHDC2^ENSG00000165516.11" ; gene_name KLHDC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140288.5" ; havana_transcript "OTTHUMT00000276869.4" ; hgnc_id "HGNC:20231" ; level 2 ; orig_coord_info "chr14,49768469,49768621,+" ; protein_id "ENSP00000298307.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLHDC2--SOS2^ENST00000298307.10" ; transcript_name "KLHDC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LSM1--AC090453.1 HAVANA gene 1238 6624 . + . FI_gene_label "LSM1^ENSG00000175324.10" ; ID "LSM1--AC090453.1^LSM1^ENSG00000175324.10" ; ccdsid "CCDS6103.1" ; exon_id "ENSE00002099181.2" ; exon_number 1 ; gene_id "LSM1--AC090453.1^LSM1^ENSG00000175324.10" ; gene_name LSM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164051.2" ; havana_transcript "OTTHUMT00000376965.2" ; hgnc_id "HGNC:20472" ; level 2 ; orig_coord_info "chr8,38176275,38176320,-" ; protein_id "ENSP00000310596.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM1--AC090453.1^ENST00000311351.9" ; transcript_name "LSM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LSM1--AC090453.1 HAVANA mRNA 1238 6624 . + . FI_gene_label "LSM1^ENSG00000175324.10" ; ID "LSM1--AC090453.1^ENST00000311351.9" ; Parent "LSM1--AC090453.1^LSM1^ENSG00000175324.10" ; ccdsid "CCDS6103.1" ; exon_id "ENSE00002099181.2" ; exon_number 1 ; gene_id "LSM1--AC090453.1^LSM1^ENSG00000175324.10" ; gene_name LSM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164051.2" ; havana_transcript "OTTHUMT00000376965.2" ; hgnc_id "HGNC:20472" ; level 2 ; orig_coord_info "chr8,38176275,38176320,-" ; protein_id "ENSP00000310596.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM1--AC090453.1^ENST00000311351.9" ; transcript_name "LSM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LSM1--KCNU1 HAVANA gene 1238 6624 . + . FI_gene_label "LSM1^ENSG00000175324.10" ; ID "LSM1--KCNU1^LSM1^ENSG00000175324.10" ; ccdsid "CCDS6103.1" ; exon_id "ENSE00002099181.2" ; exon_number 1 ; gene_id "LSM1--KCNU1^LSM1^ENSG00000175324.10" ; gene_name LSM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164051.2" ; havana_transcript "OTTHUMT00000376965.2" ; hgnc_id "HGNC:20472" ; level 2 ; orig_coord_info "chr8,38176275,38176320,-" ; protein_id "ENSP00000310596.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM1--KCNU1^ENST00000311351.9" ; transcript_name "LSM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LSM1--KCNU1 HAVANA mRNA 1238 6624 . + . FI_gene_label "LSM1^ENSG00000175324.10" ; ID "LSM1--KCNU1^ENST00000311351.9" ; Parent "LSM1--KCNU1^LSM1^ENSG00000175324.10" ; ccdsid "CCDS6103.1" ; exon_id "ENSE00002099181.2" ; exon_number 1 ; gene_id "LSM1--KCNU1^LSM1^ENSG00000175324.10" ; gene_name LSM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164051.2" ; havana_transcript "OTTHUMT00000376965.2" ; hgnc_id "HGNC:20472" ; level 2 ; orig_coord_info "chr8,38176275,38176320,-" ; protein_id "ENSP00000310596.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM1--KCNU1^ENST00000311351.9" ; transcript_name "LSM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LSM1--KCNU1 HAVANA gene 9679 38839 . + . FI_gene_label "KCNU1^ENSG00000215262.8" ; ID "LSM1--KCNU1^KCNU1^ENSG00000215262.8" ; ccdsid "CCDS55220.1" ; exon_id "ENSE00002090678.1" ; exon_number 1 ; gene_id "LSM1--KCNU1^KCNU1^ENSG00000215262.8" ; gene_name KCNU1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163981.3" ; havana_transcript "OTTHUMT00000376631.2" ; hgnc_id "HGNC:18867" ; level 2 ; orig_coord_info "chr8,36784411,36784605,+" ; protein_id "ENSP00000382770.3" ; tag non_canonical_conserved basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM1--KCNU1^ENST00000399881.8" ; transcript_name "KCNU1-201" ; transcript_support_level 2 ; transcript_type protein_coding
LSM1--KCNU1 HAVANA mRNA 9679 38839 . + . FI_gene_label "KCNU1^ENSG00000215262.8" ; ID "LSM1--KCNU1^ENST00000399881.8" ; Parent "LSM1--KCNU1^KCNU1^ENSG00000215262.8" ; ccdsid "CCDS55220.1" ; exon_id "ENSE00002090678.1" ; exon_number 1 ; gene_id "LSM1--KCNU1^KCNU1^ENSG00000215262.8" ; gene_name KCNU1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163981.3" ; havana_transcript "OTTHUMT00000376631.2" ; hgnc_id "HGNC:18867" ; level 2 ; orig_coord_info "chr8,36784411,36784605,+" ; protein_id "ENSP00000382770.3" ; tag non_canonical_conserved basic MANE_Select appris_principal_1 CCDS ; transcript_id "LSM1--KCNU1^ENST00000399881.8" ; transcript_name "KCNU1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MINDY4--SUGCT HAVANA gene 1001 24879 . + . FI_gene_label "MINDY4^ENSG00000106125.14" ; ID "MINDY4--SUGCT^MINDY4^ENSG00000106125.14" ; ccdsid "CCDS43565.1" ; exon_id "ENSE00002203309.1" ; exon_number 1 ; gene_id "MINDY4--SUGCT^MINDY4^ENSG00000106125.14" ; gene_name MINDY4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152800.6" ; havana_transcript "OTTHUMT00000327962.1" ; hgnc_id "HGNC:21916" ; level 2 ; orig_coord_info "chr7,30771494,30771556,+" ; protein_id "ENSP00000265299.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MINDY4--SUGCT^ENST00000265299.6" ; transcript_name "MINDY4-201" ; transcript_support_level 1 ; transcript_type protein_coding
MINDY4--SUGCT HAVANA mRNA 1001 24879 . + . FI_gene_label "MINDY4^ENSG00000106125.14" ; ID "MINDY4--SUGCT^ENST00000265299.6" ; Parent "MINDY4--SUGCT^MINDY4^ENSG00000106125.14" ; ccdsid "CCDS43565.1" ; exon_id "ENSE00002203309.1" ; exon_number 1 ; gene_id "MINDY4--SUGCT^MINDY4^ENSG00000106125.14" ; gene_name MINDY4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152800.6" ; havana_transcript "OTTHUMT00000327962.1" ; hgnc_id "HGNC:21916" ; level 2 ; orig_coord_info "chr7,30771494,30771556,+" ; protein_id "ENSP00000265299.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MINDY4--SUGCT^ENST00000265299.6" ; transcript_name "MINDY4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MINDY4--SUGCT HAVANA gene 27880 49627 . + . FI_gene_label "SUGCT^ENSG00000175600.16" ; ID "MINDY4--SUGCT^SUGCT^ENSG00000175600.16" ; exon_id "ENSE00001554618.3" ; exon_number 1 ; gene_id "MINDY4--SUGCT^SUGCT^ENSG00000175600.16" ; gene_name SUGCT ; gene_type protein_coding ; havana_gene "OTTHUMG00000155094.6" ; havana_transcript "OTTHUMT00000338388.1" ; hgnc_id "HGNC:16001" ; level 2 ; orig_coord_info "chr7,40135021,40135120,+" ; protein_id "ENSP00000338475.5" ; tag upstream_ATG basic MANE_Select appris_alternative_2 ; transcript_id "MINDY4--SUGCT^ENST00000335693.9" ; transcript_name "SUGCT-201" ; transcript_support_level 1 ; transcript_type protein_coding
MINDY4--SUGCT HAVANA mRNA 27880 49627 . + . FI_gene_label "SUGCT^ENSG00000175600.16" ; ID "MINDY4--SUGCT^ENST00000335693.9" ; Parent "MINDY4--SUGCT^SUGCT^ENSG00000175600.16" ; exon_id "ENSE00001554618.3" ; exon_number 1 ; gene_id "MINDY4--SUGCT^SUGCT^ENSG00000175600.16" ; gene_name SUGCT ; gene_type protein_coding ; havana_gene "OTTHUMG00000155094.6" ; havana_transcript "OTTHUMT00000338388.1" ; hgnc_id "HGNC:16001" ; level 2 ; orig_coord_info "chr7,40135021,40135120,+" ; protein_id "ENSP00000338475.5" ; tag upstream_ATG basic MANE_Select appris_alternative_2 ; transcript_id "MINDY4--SUGCT^ENST00000335693.9" ; transcript_name "SUGCT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MKRN3--ZNF185 HAVANA gene 1001 3371 . + . FI_gene_label "MKRN3^ENSG00000179455.10" ; ID "MKRN3--ZNF185^MKRN3^ENSG00000179455.10" ; ccdsid "CCDS10013.1" ; exon_id "ENSE00001272708.8" ; exon_number 1 ; gene_id "MKRN3--ZNF185^MKRN3^ENSG00000179455.10" ; gene_name MKRN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129160.6" ; havana_transcript "OTTHUMT00000251225.3" ; hgnc_id "HGNC:7114" ; level 2 ; orig_coord_info "chr15,23565783,23567303,+" ; protein_id "ENSP00000313881.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "MKRN3--ZNF185^ENST00000314520.6" ; transcript_name "MKRN3-201" ; transcript_support_level NA ; transcript_type protein_coding
MKRN3--ZNF185 HAVANA mRNA 1001 3371 . + . FI_gene_label "MKRN3^ENSG00000179455.10" ; ID "MKRN3--ZNF185^ENST00000314520.6" ; Parent "MKRN3--ZNF185^MKRN3^ENSG00000179455.10" ; ccdsid "CCDS10013.1" ; exon_id "ENSE00001272708.8" ; exon_number 1 ; gene_id "MKRN3--ZNF185^MKRN3^ENSG00000179455.10" ; gene_name MKRN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129160.6" ; havana_transcript "OTTHUMT00000251225.3" ; hgnc_id "HGNC:7114" ; level 2 ; orig_coord_info "chr15,23565783,23567303,+" ; protein_id "ENSP00000313881.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "MKRN3--ZNF185^ENST00000314520.6" ; transcript_name "MKRN3-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
MKRN3--ZNF185 ENSEMBL gene 14124 38301 . + . FI_gene_label "ZNF185^ENSG00000147394.18" ; ID "MKRN3--ZNF185^ZNF185^ENSG00000147394.18" ; ccdsid "CCDS55531.1" ; exon_id "ENSE00003500701.1" ; exon_number 1 ; gene_id "MKRN3--ZNF185^ZNF185^ENSG00000147394.18" ; gene_name ZNF185 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024187.12" ; hgnc_id "HGNC:12976" ; level 3 ; orig_coord_info "chrX,152914490,152914523,+" ; protein_id "ENSP00000312782.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "MKRN3--ZNF185^ENST00000318504.11" ; transcript_name "ZNF185-201" ; transcript_support_level 5 ; transcript_type protein_coding
MKRN3--ZNF185 ENSEMBL mRNA 14124 38301 . + . FI_gene_label "ZNF185^ENSG00000147394.18" ; ID "MKRN3--ZNF185^ENST00000318504.11" ; Parent "MKRN3--ZNF185^ZNF185^ENSG00000147394.18" ; ccdsid "CCDS55531.1" ; exon_id "ENSE00003500701.1" ; exon_number 1 ; gene_id "MKRN3--ZNF185^ZNF185^ENSG00000147394.18" ; gene_name ZNF185 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024187.12" ; hgnc_id "HGNC:12976" ; level 3 ; orig_coord_info "chrX,152914490,152914523,+" ; protein_id "ENSP00000312782.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "MKRN3--ZNF185^ENST00000318504.11" ; transcript_name "ZNF185-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NAALADL2--PRKG2 ENSEMBL gene 48191 71763 . + . FI_gene_label "PRKG2^ENSG00000138669.9" ; ID "NAALADL2--PRKG2^PRKG2^ENSG00000138669.9" ; ccdsid "CCDS3589.1" ; exon_id "ENSE00001522150.1" ; exon_number 2 ; gene_id "NAALADL2--PRKG2^PRKG2^ENSG00000138669.9" ; gene_name PRKG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130296.3" ; hgnc_id "HGNC:9416" ; level 3 ; orig_coord_info "chr4,81204587,81205047,-" ; protein_id "ENSP00000264399.1" ; tag basic appris_principal_1 CCDS ; transcript_id "NAALADL2--PRKG2^ENST00000264399.5" ; transcript_name "PRKG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
NAALADL2--PRKG2 ENSEMBL mRNA 48191 71763 . + . FI_gene_label "PRKG2^ENSG00000138669.9" ; ID "NAALADL2--PRKG2^ENST00000264399.5" ; Parent "NAALADL2--PRKG2^PRKG2^ENSG00000138669.9" ; ccdsid "CCDS3589.1" ; exon_id "ENSE00001522150.1" ; exon_number 2 ; gene_id "NAALADL2--PRKG2^PRKG2^ENSG00000138669.9" ; gene_name PRKG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130296.3" ; hgnc_id "HGNC:9416" ; level 3 ; orig_coord_info "chr4,81204587,81205047,-" ; protein_id "ENSP00000264399.1" ; tag basic appris_principal_1 CCDS ; transcript_id "NAALADL2--PRKG2^ENST00000264399.5" ; transcript_name "PRKG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NAALADL2--PRKG2 HAVANA gene 21188 29957 . + . FI_gene_label "NAALADL2^ENSG00000177694.16" ; ID "NAALADL2--PRKG2^NAALADL2^ENSG00000177694.16" ; exon_id "ENSE00003539606.1" ; exon_number 1 ; gene_id "NAALADL2--PRKG2^NAALADL2^ENSG00000177694.16" ; gene_name NAALADL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157120.7" ; havana_transcript "OTTHUMT00000347394.2" ; hgnc_id "HGNC:23219" ; level 2 ; orig_coord_info "chr3,175256411,175256530,+" ; protein_id "ENSP00000396969.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NAALADL2--PRKG2^ENST00000414826.1" ; transcript_name "NAALADL2-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
NAALADL2--PRKG2 HAVANA mRNA 21188 29957 . + . FI_gene_label "NAALADL2^ENSG00000177694.16" ; ID "NAALADL2--PRKG2^ENST00000414826.1" ; Parent "NAALADL2--PRKG2^NAALADL2^ENSG00000177694.16" ; exon_id "ENSE00003539606.1" ; exon_number 1 ; gene_id "NAALADL2--PRKG2^NAALADL2^ENSG00000177694.16" ; gene_name NAALADL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157120.7" ; havana_transcript "OTTHUMT00000347394.2" ; hgnc_id "HGNC:23219" ; level 2 ; orig_coord_info "chr3,175256411,175256530,+" ; protein_id "ENSP00000396969.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NAALADL2--PRKG2^ENST00000414826.1" ; transcript_name "NAALADL2-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
NEGR1--ZNF644 HAVANA gene 2222 16207 . + . FI_gene_label "NEGR1^ENSG00000172260.15" ; ID "NEGR1--ZNF644^NEGR1^ENSG00000172260.15" ; exon_id "ENSE00003693221.1" ; exon_number 2 ; gene_id "NEGR1--ZNF644^NEGR1^ENSG00000172260.15" ; gene_name NEGR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009698.6" ; havana_transcript "OTTHUMT00000026723.1" ; hgnc_id "HGNC:17302" ; level 2 ; orig_coord_info "chr1,71935079,71935103,-" ; protein_id "ENSP00000305938.3" ; tag basic ; transcript_id "NEGR1--ZNF644^ENST00000306821.3" ; transcript_name "NEGR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NEGR1--ZNF644 HAVANA mRNA 2222 16207 . + . FI_gene_label "NEGR1^ENSG00000172260.15" ; ID "NEGR1--ZNF644^ENST00000306821.3" ; Parent "NEGR1--ZNF644^NEGR1^ENSG00000172260.15" ; exon_id "ENSE00003693221.1" ; exon_number 2 ; gene_id "NEGR1--ZNF644^NEGR1^ENSG00000172260.15" ; gene_name NEGR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009698.6" ; havana_transcript "OTTHUMT00000026723.1" ; hgnc_id "HGNC:17302" ; level 2 ; orig_coord_info "chr1,71935079,71935103,-" ; protein_id "ENSP00000305938.3" ; tag basic ; transcript_id "NEGR1--ZNF644^ENST00000306821.3" ; transcript_name "NEGR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NEGR1--ZNF644 HAVANA gene 26446 40537 . + . FI_gene_label "ZNF644^ENSG00000122482.21" ; ID "NEGR1--ZNF644^ZNF644^ENSG00000122482.21" ; ccdsid "CCDS731.1" ; exon_id "ENSE00003485632.1" ; exon_number 2 ; gene_id "NEGR1--ZNF644^ZNF644^ENSG00000122482.21" ; gene_name ZNF644 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010078.5" ; havana_transcript "OTTHUMT00000504259.2" ; hgnc_id "HGNC:29222" ; level 2 ; orig_coord_info "chr1,90982310,90982353,-" ; protein_id "ENSP00000337008.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEGR1--ZNF644^ENST00000337393.10" ; transcript_name "ZNF644-201" ; transcript_support_level 1 ; transcript_type protein_coding
NEGR1--ZNF644 HAVANA mRNA 26446 40537 . + . FI_gene_label "ZNF644^ENSG00000122482.21" ; ID "NEGR1--ZNF644^ENST00000337393.10" ; Parent "NEGR1--ZNF644^ZNF644^ENSG00000122482.21" ; ccdsid "CCDS731.1" ; exon_id "ENSE00003485632.1" ; exon_number 2 ; gene_id "NEGR1--ZNF644^ZNF644^ENSG00000122482.21" ; gene_name ZNF644 ; gene_type protein_coding ; havana_gene "OTTHUMG00000010078.5" ; havana_transcript "OTTHUMT00000504259.2" ; hgnc_id "HGNC:29222" ; level 2 ; orig_coord_info "chr1,90982310,90982353,-" ; protein_id "ENSP00000337008.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEGR1--ZNF644^ENST00000337393.10" ; transcript_name "ZNF644-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NEMF--SOS2 HAVANA gene 37522 65990 . + . FI_gene_label "SOS2^ENSG00000100485.12" ; ID "NEMF--SOS2^SOS2^ENSG00000100485.12" ; ccdsid "CCDS9697.1" ; exon_id "ENSE00002525812.2" ; exon_number 1 ; gene_id "NEMF--SOS2^SOS2^ENSG00000100485.12" ; gene_name SOS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140292.5" ; havana_transcript "OTTHUMT00000276878.4" ; hgnc_id "HGNC:11188" ; level 2 ; orig_coord_info "chr14,50231197,50231283,-" ; protein_id "ENSP00000216373.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEMF--SOS2^ENST00000216373.10" ; transcript_name "SOS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NEMF--SOS2 HAVANA mRNA 37522 65990 . + . FI_gene_label "SOS2^ENSG00000100485.12" ; ID "NEMF--SOS2^ENST00000216373.10" ; Parent "NEMF--SOS2^SOS2^ENSG00000100485.12" ; ccdsid "CCDS9697.1" ; exon_id "ENSE00002525812.2" ; exon_number 1 ; gene_id "NEMF--SOS2^SOS2^ENSG00000100485.12" ; gene_name SOS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140292.5" ; havana_transcript "OTTHUMT00000276878.4" ; hgnc_id "HGNC:11188" ; level 2 ; orig_coord_info "chr14,50231197,50231283,-" ; protein_id "ENSP00000216373.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEMF--SOS2^ENST00000216373.10" ; transcript_name "SOS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NEMF--SOS2 HAVANA gene 1034 34521 . + . FI_gene_label "NEMF^ENSG00000165525.18" ; ID "NEMF--SOS2^NEMF^ENSG00000165525.18" ; ccdsid "CCDS9694.1" ; exon_id "ENSE00001253649.4" ; exon_number 1 ; gene_id "NEMF--SOS2^NEMF^ENSG00000165525.18" ; gene_name NEMF ; gene_type protein_coding ; havana_gene "OTTHUMG00000170857.6" ; havana_transcript "OTTHUMT00000410798.4" ; hgnc_id "HGNC:10663" ; level 2 ; orig_coord_info "chr14,49852695,49852753,-" ; protein_id "ENSP00000298310.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEMF--SOS2^ENST00000298310.10" ; transcript_name "NEMF-201" ; transcript_support_level 5 ; transcript_type protein_coding
NEMF--SOS2 HAVANA mRNA 1034 34521 . + . FI_gene_label "NEMF^ENSG00000165525.18" ; ID "NEMF--SOS2^ENST00000298310.10" ; Parent "NEMF--SOS2^NEMF^ENSG00000165525.18" ; ccdsid "CCDS9694.1" ; exon_id "ENSE00001253649.4" ; exon_number 1 ; gene_id "NEMF--SOS2^NEMF^ENSG00000165525.18" ; gene_name NEMF ; gene_type protein_coding ; havana_gene "OTTHUMG00000170857.6" ; havana_transcript "OTTHUMT00000410798.4" ; hgnc_id "HGNC:10663" ; level 2 ; orig_coord_info "chr14,49852695,49852753,-" ; protein_id "ENSP00000298310.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NEMF--SOS2^ENST00000298310.10" ; transcript_name "NEMF-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NRG3--WAC HAVANA gene 25256 45856 . + . FI_gene_label "WAC^ENSG00000095787.24" ; ID "NRG3--WAC^WAC^ENSG00000095787.24" ; ccdsid "CCDS7160.1" ; exon_id "ENSE00001823796.1" ; exon_number 1 ; gene_id "NRG3--WAC^WAC^ENSG00000095787.24" ; gene_name WAC ; gene_type protein_coding ; havana_gene "OTTHUMG00000017872.11" ; havana_transcript "OTTHUMT00000047360.4" ; hgnc_id "HGNC:17327" ; level 1 ; orig_coord_info "chr10,28533580,28533620,+" ; protein_id "ENSP00000311106.4" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "NRG3--WAC^ENST00000347934.8" ; transcript_name "WAC-202" ; transcript_support_level 5 ; transcript_type protein_coding
NRG3--WAC HAVANA mRNA 25256 45856 . + . FI_gene_label "WAC^ENSG00000095787.24" ; ID "NRG3--WAC^ENST00000347934.8" ; Parent "NRG3--WAC^WAC^ENSG00000095787.24" ; ccdsid "CCDS7160.1" ; exon_id "ENSE00001823796.1" ; exon_number 1 ; gene_id "NRG3--WAC^WAC^ENSG00000095787.24" ; gene_name WAC ; gene_type protein_coding ; havana_gene "OTTHUMG00000017872.11" ; havana_transcript "OTTHUMT00000047360.4" ; hgnc_id "HGNC:17327" ; level 1 ; orig_coord_info "chr10,28533580,28533620,+" ; protein_id "ENSP00000311106.4" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "NRG3--WAC^ENST00000347934.8" ; transcript_name "WAC-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NRG3--WAC HAVANA gene 1001 21434 . + . FI_gene_label "NRG3^ENSG00000185737.13" ; ID "NRG3--WAC^NRG3^ENSG00000185737.13" ; ccdsid "CCDS31233.1" ; exon_id "ENSE00001456991.3" ; exon_number 1 ; gene_id "NRG3--WAC^NRG3^ENSG00000185737.13" ; gene_name NRG3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018626.6" ; havana_transcript "OTTHUMT00000412261.2" ; hgnc_id "HGNC:7999" ; level 2 ; orig_coord_info "chr10,81875341,81876163,+" ; protein_id "ENSP00000361214.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NRG3--WAC^ENST00000372141.7" ; transcript_name "NRG3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NRG3--WAC HAVANA mRNA 1001 21434 . + . FI_gene_label "NRG3^ENSG00000185737.13" ; ID "NRG3--WAC^ENST00000372141.7" ; Parent "NRG3--WAC^NRG3^ENSG00000185737.13" ; ccdsid "CCDS31233.1" ; exon_id "ENSE00001456991.3" ; exon_number 1 ; gene_id "NRG3--WAC^NRG3^ENSG00000185737.13" ; gene_name NRG3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018626.6" ; havana_transcript "OTTHUMT00000412261.2" ; hgnc_id "HGNC:7999" ; level 2 ; orig_coord_info "chr10,81875341,81876163,+" ; protein_id "ENSP00000361214.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "NRG3--WAC^ENST00000372141.7" ; transcript_name "NRG3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NT5DC1--LIN28B HAVANA gene 1003 19834 . + . FI_gene_label "NT5DC1^ENSG00000178425.14" ; ID "NT5DC1--LIN28B^NT5DC1^ENSG00000178425.14" ; ccdsid "CCDS5104.1" ; exon_id "ENSE00001873818.2" ; exon_number 1 ; gene_id "NT5DC1--LIN28B^NT5DC1^ENSG00000178425.14" ; gene_name NT5DC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015428.8" ; havana_transcript "OTTHUMT00000041931.5" ; hgnc_id "HGNC:21556" ; level 2 ; orig_coord_info "chr6,116100931,116101023,+" ; protein_id "ENSP00000326858.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NT5DC1--LIN28B^ENST00000319550.9" ; transcript_name "NT5DC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NT5DC1--LIN28B HAVANA mRNA 1003 19834 . + . FI_gene_label "NT5DC1^ENSG00000178425.14" ; ID "NT5DC1--LIN28B^ENST00000319550.9" ; Parent "NT5DC1--LIN28B^NT5DC1^ENSG00000178425.14" ; ccdsid "CCDS5104.1" ; exon_id "ENSE00001873818.2" ; exon_number 1 ; gene_id "NT5DC1--LIN28B^NT5DC1^ENSG00000178425.14" ; gene_name NT5DC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015428.8" ; havana_transcript "OTTHUMT00000041931.5" ; hgnc_id "HGNC:21556" ; level 2 ; orig_coord_info "chr6,116100931,116101023,+" ; protein_id "ENSP00000326858.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NT5DC1--LIN28B^ENST00000319550.9" ; transcript_name "NT5DC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NT5DC1--LIN28B HAVANA gene 26532 34815 . + . FI_gene_label "LIN28B^ENSG00000187772.8" ; ID "NT5DC1--LIN28B^LIN28B^ENSG00000187772.8" ; ccdsid "CCDS34504.1" ; exon_id "ENSE00001428389.2" ; exon_number 1 ; gene_id "NT5DC1--LIN28B^LIN28B^ENSG00000187772.8" ; gene_name LIN28B ; gene_type protein_coding ; havana_gene "OTTHUMG00000015290.4" ; havana_transcript "OTTHUMT00000041646.4" ; hgnc_id "HGNC:32207" ; level 2 ; orig_coord_info "chr6,104957251,104957260,+" ; protein_id "ENSP00000344401.4" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "NT5DC1--LIN28B^ENST00000345080.5" ; transcript_name "LIN28B-201" ; transcript_support_level 1 ; transcript_type protein_coding
NT5DC1--LIN28B HAVANA mRNA 26532 34815 . + . FI_gene_label "LIN28B^ENSG00000187772.8" ; ID "NT5DC1--LIN28B^ENST00000345080.5" ; Parent "NT5DC1--LIN28B^LIN28B^ENSG00000187772.8" ; ccdsid "CCDS34504.1" ; exon_id "ENSE00001428389.2" ; exon_number 1 ; gene_id "NT5DC1--LIN28B^LIN28B^ENSG00000187772.8" ; gene_name LIN28B ; gene_type protein_coding ; havana_gene "OTTHUMG00000015290.4" ; havana_transcript "OTTHUMT00000041646.4" ; hgnc_id "HGNC:32207" ; level 2 ; orig_coord_info "chr6,104957251,104957260,+" ; protein_id "ENSP00000344401.4" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "NT5DC1--LIN28B^ENST00000345080.5" ; transcript_name "LIN28B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUP88--UBE2G1 HAVANA gene 1211 16480 . + . FI_gene_label "NUP88^ENSG00000108559.12" ; ID "NUP88--UBE2G1^NUP88^ENSG00000108559.12" ; exon_id "ENSE00002663408.1" ; exon_number 1 ; gene_id "NUP88--UBE2G1^NUP88^ENSG00000108559.12" ; gene_name NUP88 ; gene_type protein_coding ; havana_gene "OTTHUMG00000099453.5" ; havana_transcript "OTTHUMT00000439357.1" ; hgnc_id "HGNC:8067" ; level 1 ; orig_coord_info "chr17,5419354,5419466,-" ; protein_id "ENSP00000225696.4" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "NUP88--UBE2G1^ENST00000225696.8" ; transcript_name "NUP88-201" ; transcript_support_level 5 ; transcript_type protein_coding
NUP88--UBE2G1 HAVANA mRNA 1211 16480 . + . FI_gene_label "NUP88^ENSG00000108559.12" ; ID "NUP88--UBE2G1^ENST00000225696.8" ; Parent "NUP88--UBE2G1^NUP88^ENSG00000108559.12" ; exon_id "ENSE00002663408.1" ; exon_number 1 ; gene_id "NUP88--UBE2G1^NUP88^ENSG00000108559.12" ; gene_name NUP88 ; gene_type protein_coding ; havana_gene "OTTHUMG00000099453.5" ; havana_transcript "OTTHUMT00000439357.1" ; hgnc_id "HGNC:8067" ; level 1 ; orig_coord_info "chr17,5419354,5419466,-" ; protein_id "ENSP00000225696.4" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "NUP88--UBE2G1^ENST00000225696.8" ; transcript_name "NUP88-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NUP88--UBE2G1 HAVANA gene 23020 35412 . + . FI_gene_label "UBE2G1^ENSG00000132388.12" ; ID "NUP88--UBE2G1^UBE2G1^ENSG00000132388.12" ; ccdsid "CCDS32532.1" ; exon_id "ENSE00002657238.1" ; exon_number 1 ; gene_id "NUP88--UBE2G1^UBE2G1^ENSG00000132388.12" ; gene_name UBE2G1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177826.3" ; havana_transcript "OTTHUMT00000439099.1" ; hgnc_id "HGNC:12482" ; level 2 ; orig_coord_info "chr17,4366271,4366316,-" ; protein_id "ENSP00000380178.2" ; tag basic appris_principal_1 CCDS ; transcript_id "NUP88--UBE2G1^ENST00000396981.6" ; transcript_name "UBE2G1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUP88--UBE2G1 HAVANA mRNA 23020 35412 . + . FI_gene_label "UBE2G1^ENSG00000132388.12" ; ID "NUP88--UBE2G1^ENST00000396981.6" ; Parent "NUP88--UBE2G1^UBE2G1^ENSG00000132388.12" ; ccdsid "CCDS32532.1" ; exon_id "ENSE00002657238.1" ; exon_number 1 ; gene_id "NUP88--UBE2G1^UBE2G1^ENSG00000132388.12" ; gene_name UBE2G1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177826.3" ; havana_transcript "OTTHUMT00000439099.1" ; hgnc_id "HGNC:12482" ; level 2 ; orig_coord_info "chr17,4366271,4366316,-" ; protein_id "ENSP00000380178.2" ; tag basic appris_principal_1 CCDS ; transcript_id "NUP88--UBE2G1^ENST00000396981.6" ; transcript_name "UBE2G1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDSS2--AL023693.1 HAVANA gene 1001 5236 . + . FI_gene_label "PDSS2^ENSG00000164494.12" ; ID "PDSS2--AL023693.1^PDSS2^ENSG00000164494.12" ; exon_id "ENSE00001878295.1" ; exon_number 1 ; gene_id "PDSS2--AL023693.1^PDSS2^ENSG00000164494.12" ; gene_name PDSS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059359.3" ; havana_transcript "OTTHUMT00000131955.1" ; hgnc_id "HGNC:23041" ; level 2 ; orig_coord_info "chr6,107458990,107459285,-" ; protein_id "ENSP00000358027.4" ; tag basic ; transcript_id "PDSS2--AL023693.1^ENST00000369031.4" ; transcript_name "PDSS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDSS2--AL023693.1 HAVANA mRNA 1001 5236 . + . FI_gene_label "PDSS2^ENSG00000164494.12" ; ID "PDSS2--AL023693.1^ENST00000369031.4" ; Parent "PDSS2--AL023693.1^PDSS2^ENSG00000164494.12" ; exon_id "ENSE00001878295.1" ; exon_number 1 ; gene_id "PDSS2--AL023693.1^PDSS2^ENSG00000164494.12" ; gene_name PDSS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059359.3" ; havana_transcript "OTTHUMT00000131955.1" ; hgnc_id "HGNC:23041" ; level 2 ; orig_coord_info "chr6,107458990,107459285,-" ; protein_id "ENSP00000358027.4" ; tag basic ; transcript_id "PDSS2--AL023693.1^ENST00000369031.4" ; transcript_name "PDSS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDSS2--MIR548A2 HAVANA gene 1001 5236 . + . FI_gene_label "PDSS2^ENSG00000164494.12" ; ID "PDSS2--MIR548A2^PDSS2^ENSG00000164494.12" ; exon_id "ENSE00001878295.1" ; exon_number 1 ; gene_id "PDSS2--MIR548A2^PDSS2^ENSG00000164494.12" ; gene_name PDSS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059359.3" ; havana_transcript "OTTHUMT00000131955.1" ; hgnc_id "HGNC:23041" ; level 2 ; orig_coord_info "chr6,107458990,107459285,-" ; protein_id "ENSP00000358027.4" ; tag basic ; transcript_id "PDSS2--MIR548A2^ENST00000369031.4" ; transcript_name "PDSS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDSS2--MIR548A2 HAVANA mRNA 1001 5236 . + . FI_gene_label "PDSS2^ENSG00000164494.12" ; ID "PDSS2--MIR548A2^ENST00000369031.4" ; Parent "PDSS2--MIR548A2^PDSS2^ENSG00000164494.12" ; exon_id "ENSE00001878295.1" ; exon_number 1 ; gene_id "PDSS2--MIR548A2^PDSS2^ENSG00000164494.12" ; gene_name PDSS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059359.3" ; havana_transcript "OTTHUMT00000131955.1" ; hgnc_id "HGNC:23041" ; level 2 ; orig_coord_info "chr6,107458990,107459285,-" ; protein_id "ENSP00000358027.4" ; tag basic ; transcript_id "PDSS2--MIR548A2^ENST00000369031.4" ; transcript_name "PDSS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDSS2--MYB ENSEMBL gene 16929 34998 . + . FI_gene_label "MYB^ENSG00000118513.19" ; ID "PDSS2--MYB^MYB^ENSG00000118513.19" ; exon_id "ENSE00002174682.1" ; exon_number 1 ; gene_id "PDSS2--MYB^MYB^ENSG00000118513.19" ; gene_name MYB ; gene_type protein_coding ; havana_gene "OTTHUMG00000015629.11" ; hgnc_id "HGNC:7545" ; level 3 ; orig_coord_info "chr6,135181514,135181536,+" ; protein_id "ENSP00000326328.8" ; tag basic ; transcript_id "PDSS2--MYB^ENST00000316528.12" ; transcript_name "MYB-201" ; transcript_support_level 5 ; transcript_type protein_coding
PDSS2--MYB ENSEMBL mRNA 16929 34998 . + . FI_gene_label "MYB^ENSG00000118513.19" ; ID "PDSS2--MYB^ENST00000316528.12" ; Parent "PDSS2--MYB^MYB^ENSG00000118513.19" ; exon_id "ENSE00002174682.1" ; exon_number 1 ; gene_id "PDSS2--MYB^MYB^ENSG00000118513.19" ; gene_name MYB ; gene_type protein_coding ; havana_gene "OTTHUMG00000015629.11" ; hgnc_id "HGNC:7545" ; level 3 ; orig_coord_info "chr6,135181514,135181536,+" ; protein_id "ENSP00000326328.8" ; tag basic ; transcript_id "PDSS2--MYB^ENST00000316528.12" ; transcript_name "MYB-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PDSS2--MYB HAVANA gene 1001 5236 . + . FI_gene_label "PDSS2^ENSG00000164494.12" ; ID "PDSS2--MYB^PDSS2^ENSG00000164494.12" ; exon_id "ENSE00001878295.1" ; exon_number 1 ; gene_id "PDSS2--MYB^PDSS2^ENSG00000164494.12" ; gene_name PDSS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059359.3" ; havana_transcript "OTTHUMT00000131955.1" ; hgnc_id "HGNC:23041" ; level 2 ; orig_coord_info "chr6,107458990,107459285,-" ; protein_id "ENSP00000358027.4" ; tag basic ; transcript_id "PDSS2--MYB^ENST00000369031.4" ; transcript_name "PDSS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDSS2--MYB HAVANA mRNA 1001 5236 . + . FI_gene_label "PDSS2^ENSG00000164494.12" ; ID "PDSS2--MYB^ENST00000369031.4" ; Parent "PDSS2--MYB^PDSS2^ENSG00000164494.12" ; exon_id "ENSE00001878295.1" ; exon_number 1 ; gene_id "PDSS2--MYB^PDSS2^ENSG00000164494.12" ; gene_name PDSS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059359.3" ; havana_transcript "OTTHUMT00000131955.1" ; hgnc_id "HGNC:23041" ; level 2 ; orig_coord_info "chr6,107458990,107459285,-" ; protein_id "ENSP00000358027.4" ; tag basic ; transcript_id "PDSS2--MYB^ENST00000369031.4" ; transcript_name "PDSS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDSS2--SAMD3 HAVANA gene 24165 28877 . + . FI_gene_label "SAMD3^ENSG00000164483.17" ; ID "PDSS2--SAMD3^SAMD3^ENSG00000164483.17" ; exon_id "ENSE00001865190.1" ; exon_number 1 ; gene_id "PDSS2--SAMD3^SAMD3^ENSG00000164483.17" ; gene_name SAMD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015556.8" ; havana_transcript "OTTHUMT00000042200.1" ; hgnc_id "HGNC:21574" ; level 2 ; orig_coord_info "chr6,130215195,130215273,-" ; protein_id "ENSP00000324874.6" ; tag basic appris_alternative_2 ; transcript_id "PDSS2--SAMD3^ENST00000324172.10" ; transcript_name "SAMD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDSS2--SAMD3 HAVANA mRNA 24165 28877 . + . FI_gene_label "SAMD3^ENSG00000164483.17" ; ID "PDSS2--SAMD3^ENST00000324172.10" ; Parent "PDSS2--SAMD3^SAMD3^ENSG00000164483.17" ; exon_id "ENSE00001865190.1" ; exon_number 1 ; gene_id "PDSS2--SAMD3^SAMD3^ENSG00000164483.17" ; gene_name SAMD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015556.8" ; havana_transcript "OTTHUMT00000042200.1" ; hgnc_id "HGNC:21574" ; level 2 ; orig_coord_info "chr6,130215195,130215273,-" ; protein_id "ENSP00000324874.6" ; tag basic appris_alternative_2 ; transcript_id "PDSS2--SAMD3^ENST00000324172.10" ; transcript_name "SAMD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDSS2--SAMD3 HAVANA gene 1001 5236 . + . FI_gene_label "PDSS2^ENSG00000164494.12" ; ID "PDSS2--SAMD3^PDSS2^ENSG00000164494.12" ; exon_id "ENSE00001878295.1" ; exon_number 1 ; gene_id "PDSS2--SAMD3^PDSS2^ENSG00000164494.12" ; gene_name PDSS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059359.3" ; havana_transcript "OTTHUMT00000131955.1" ; hgnc_id "HGNC:23041" ; level 2 ; orig_coord_info "chr6,107458990,107459285,-" ; protein_id "ENSP00000358027.4" ; tag basic ; transcript_id "PDSS2--SAMD3^ENST00000369031.4" ; transcript_name "PDSS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDSS2--SAMD3 HAVANA mRNA 1001 5236 . + . FI_gene_label "PDSS2^ENSG00000164494.12" ; ID "PDSS2--SAMD3^ENST00000369031.4" ; Parent "PDSS2--SAMD3^PDSS2^ENSG00000164494.12" ; exon_id "ENSE00001878295.1" ; exon_number 1 ; gene_id "PDSS2--SAMD3^PDSS2^ENSG00000164494.12" ; gene_name PDSS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059359.3" ; havana_transcript "OTTHUMT00000131955.1" ; hgnc_id "HGNC:23041" ; level 2 ; orig_coord_info "chr6,107458990,107459285,-" ; protein_id "ENSP00000358027.4" ; tag basic ; transcript_id "PDSS2--SAMD3^ENST00000369031.4" ; transcript_name "PDSS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PER3--ERRFI1 HAVANA gene 1384 24919 . + . FI_gene_label "PER3^ENSG00000049246.14" ; ID "PER3--ERRFI1^PER3^ENSG00000049246.14" ; ccdsid "CCDS89.1" ; exon_id "ENSE00002715739.1" ; exon_number 1 ; gene_id "PER3--ERRFI1^PER3^ENSG00000049246.14" ; gene_name PER3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001216.3" ; havana_transcript "OTTHUMT00000003607.1" ; hgnc_id "HGNC:8847" ; level 2 ; orig_coord_info "chr1,7784878,7785005,+" ; protein_id "ENSP00000355031.2" ; tag basic appris_principal_4 CCDS ; transcript_id "PER3--ERRFI1^ENST00000361923.2" ; transcript_name "PER3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PER3--ERRFI1 HAVANA mRNA 1384 24919 . + . FI_gene_label "PER3^ENSG00000049246.14" ; ID "PER3--ERRFI1^ENST00000361923.2" ; Parent "PER3--ERRFI1^PER3^ENSG00000049246.14" ; ccdsid "CCDS89.1" ; exon_id "ENSE00002715739.1" ; exon_number 1 ; gene_id "PER3--ERRFI1^PER3^ENSG00000049246.14" ; gene_name PER3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001216.3" ; havana_transcript "OTTHUMT00000003607.1" ; hgnc_id "HGNC:8847" ; level 2 ; orig_coord_info "chr1,7784878,7785005,+" ; protein_id "ENSP00000355031.2" ; tag basic appris_principal_4 CCDS ; transcript_id "PER3--ERRFI1^ENST00000361923.2" ; transcript_name "PER3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PER3--ERRFI1 HAVANA gene 27920 33037 . + . FI_gene_label "ERRFI1^ENSG00000116285.13" ; ID "PER3--ERRFI1^ERRFI1^ENSG00000116285.13" ; ccdsid "CCDS94.1" ; exon_id "ENSE00002851188.1" ; exon_number 2 ; gene_id "PER3--ERRFI1^ERRFI1^ENSG00000116285.13" ; gene_name ERRFI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001221.4" ; havana_transcript "OTTHUMT00000003617.2" ; hgnc_id "HGNC:18185" ; level 2 ; orig_coord_info "chr1,8015495,8015619,-" ; protein_id "ENSP00000366702.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PER3--ERRFI1^ENST00000377482.10" ; transcript_name "ERRFI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PER3--ERRFI1 HAVANA mRNA 27920 33037 . + . FI_gene_label "ERRFI1^ENSG00000116285.13" ; ID "PER3--ERRFI1^ENST00000377482.10" ; Parent "PER3--ERRFI1^ERRFI1^ENSG00000116285.13" ; ccdsid "CCDS94.1" ; exon_id "ENSE00002851188.1" ; exon_number 2 ; gene_id "PER3--ERRFI1^ERRFI1^ENSG00000116285.13" ; gene_name ERRFI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000001221.4" ; havana_transcript "OTTHUMT00000003617.2" ; hgnc_id "HGNC:18185" ; level 2 ; orig_coord_info "chr1,8015495,8015619,-" ; protein_id "ENSP00000366702.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PER3--ERRFI1^ENST00000377482.10" ; transcript_name "ERRFI1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PHC3--WDR49 HAVANA gene 37271 60560 . + . FI_gene_label "WDR49^ENSG00000174776.11" ; ID "PHC3--WDR49^WDR49^ENSG00000174776.11" ; exon_id "ENSE00003489334.1" ; exon_number 2 ; gene_id "PHC3--WDR49^WDR49^ENSG00000174776.11" ; gene_name WDR49 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158290.7" ; havana_transcript "OTTHUMT00000350592.3" ; hgnc_id "HGNC:26587" ; level 2 ; orig_coord_info "chr3,167604301,167604403,-" ; protein_id "ENSP00000311343.3" ; tag basic appris_alternative_2 ; transcript_id "PHC3--WDR49^ENST00000308378.7" ; transcript_name "WDR49-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHC3--WDR49 HAVANA mRNA 37271 60560 . + . FI_gene_label "WDR49^ENSG00000174776.11" ; ID "PHC3--WDR49^ENST00000308378.7" ; Parent "PHC3--WDR49^WDR49^ENSG00000174776.11" ; exon_id "ENSE00003489334.1" ; exon_number 2 ; gene_id "PHC3--WDR49^WDR49^ENSG00000174776.11" ; gene_name WDR49 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158290.7" ; havana_transcript "OTTHUMT00000350592.3" ; hgnc_id "HGNC:26587" ; level 2 ; orig_coord_info "chr3,167604301,167604403,-" ; protein_id "ENSP00000311343.3" ; tag basic appris_alternative_2 ; transcript_id "PHC3--WDR49^ENST00000308378.7" ; transcript_name "WDR49-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PHC3--WDR49 HAVANA gene 1001 13515 . + . FI_gene_label "PHC3^ENSG00000173889.16" ; ID "PHC3--WDR49^PHC3^ENSG00000173889.16" ; exon_id "ENSE00002128703.1" ; exon_number 1 ; gene_id "PHC3--WDR49^PHC3^ENSG00000173889.16" ; gene_name PHC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158777.9" ; havana_transcript "OTTHUMT00000352287.3" ; hgnc_id "HGNC:15682" ; level 2 ; orig_coord_info "chr3,170181702,170181715,-" ; protein_id "ENSP00000417860.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PHC3--WDR49^ENST00000466189.5" ; transcript_name "PHC3-202" ; transcript_support_level 3 ; transcript_type protein_coding
PHC3--WDR49 HAVANA mRNA 1001 13515 . + . FI_gene_label "PHC3^ENSG00000173889.16" ; ID "PHC3--WDR49^ENST00000466189.5" ; Parent "PHC3--WDR49^PHC3^ENSG00000173889.16" ; exon_id "ENSE00002128703.1" ; exon_number 1 ; gene_id "PHC3--WDR49^PHC3^ENSG00000173889.16" ; gene_name PHC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158777.9" ; havana_transcript "OTTHUMT00000352287.3" ; hgnc_id "HGNC:15682" ; level 2 ; orig_coord_info "chr3,170181702,170181715,-" ; protein_id "ENSP00000417860.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PHC3--WDR49^ENST00000466189.5" ; transcript_name "PHC3-202" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
PPIH--VTCN1 HAVANA gene 1089 12656 . + . FI_gene_label "PPIH^ENSG00000171960.12" ; ID "PPIH--VTCN1^PPIH^ENSG00000171960.12" ; ccdsid "CCDS469.1" ; exon_id "ENSE00001830638.2" ; exon_number 1 ; gene_id "PPIH--VTCN1^PPIH^ENSG00000171960.12" ; gene_name PPIH ; gene_type protein_coding ; havana_gene "OTTHUMG00000007520.7" ; havana_transcript "OTTHUMT00000019778.2" ; hgnc_id "HGNC:14651" ; level 2 ; orig_coord_info "chr1,42658447,42658512,+" ; protein_id "ENSP00000306614.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPIH--VTCN1^ENST00000304979.8" ; transcript_name "PPIH-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPIH--VTCN1 HAVANA mRNA 1089 12656 . + . FI_gene_label "PPIH^ENSG00000171960.12" ; ID "PPIH--VTCN1^ENST00000304979.8" ; Parent "PPIH--VTCN1^PPIH^ENSG00000171960.12" ; ccdsid "CCDS469.1" ; exon_id "ENSE00001830638.2" ; exon_number 1 ; gene_id "PPIH--VTCN1^PPIH^ENSG00000171960.12" ; gene_name PPIH ; gene_type protein_coding ; havana_gene "OTTHUMG00000007520.7" ; havana_transcript "OTTHUMT00000019778.2" ; hgnc_id "HGNC:14651" ; level 2 ; orig_coord_info "chr1,42658447,42658512,+" ; protein_id "ENSP00000306614.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPIH--VTCN1^ENST00000304979.8" ; transcript_name "PPIH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPIH--VTCN1 ENSEMBL gene 15657 25682 . + . FI_gene_label "VTCN1^ENSG00000134258.17" ; ID "PPIH--VTCN1^VTCN1^ENSG00000134258.17" ; ccdsid "CCDS58020.1" ; exon_id "ENSE00003733740.1" ; exon_number 1 ; gene_id "PPIH--VTCN1^VTCN1^ENSG00000134258.17" ; gene_name VTCN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012118.4" ; hgnc_id "HGNC:28873" ; level 3 ; orig_coord_info "chr1,117210824,117210855,-" ; protein_id "ENSP00000328168.3" ; tag basic CCDS ; transcript_id "PPIH--VTCN1^ENST00000328189.7" ; transcript_name "VTCN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
PPIH--VTCN1 ENSEMBL mRNA 15657 25682 . + . FI_gene_label "VTCN1^ENSG00000134258.17" ; ID "PPIH--VTCN1^ENST00000328189.7" ; Parent "PPIH--VTCN1^VTCN1^ENSG00000134258.17" ; ccdsid "CCDS58020.1" ; exon_id "ENSE00003733740.1" ; exon_number 1 ; gene_id "PPIH--VTCN1^VTCN1^ENSG00000134258.17" ; gene_name VTCN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012118.4" ; hgnc_id "HGNC:28873" ; level 3 ; orig_coord_info "chr1,117210824,117210855,-" ; protein_id "ENSP00000328168.3" ; tag basic CCDS ; transcript_id "PPIH--VTCN1^ENST00000328189.7" ; transcript_name "VTCN1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PRELID2--CDC20B HAVANA gene 20895 37428 . + . FI_gene_label "CDC20B^ENSG00000164287.13" ; ID "PRELID2--CDC20B^CDC20B^ENSG00000164287.13" ; ccdsid "CCDS3966.1" ; exon_id "ENSE00001362035.1" ; exon_number 1 ; gene_id "PRELID2--CDC20B^CDC20B^ENSG00000164287.13" ; gene_name CDC20B ; gene_type protein_coding ; havana_gene "OTTHUMG00000131185.2" ; havana_transcript "OTTHUMT00000253908.2" ; hgnc_id "HGNC:24222" ; level 2 ; orig_coord_info "chr5,55172938,55173000,-" ; protein_id "ENSP00000296733.1" ; tag basic appris_principal_4 CCDS ; transcript_id "PRELID2--CDC20B^ENST00000296733.5" ; transcript_name "CDC20B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRELID2--CDC20B HAVANA mRNA 20895 37428 . + . FI_gene_label "CDC20B^ENSG00000164287.13" ; ID "PRELID2--CDC20B^ENST00000296733.5" ; Parent "PRELID2--CDC20B^CDC20B^ENSG00000164287.13" ; ccdsid "CCDS3966.1" ; exon_id "ENSE00001362035.1" ; exon_number 1 ; gene_id "PRELID2--CDC20B^CDC20B^ENSG00000164287.13" ; gene_name CDC20B ; gene_type protein_coding ; havana_gene "OTTHUMG00000131185.2" ; havana_transcript "OTTHUMT00000253908.2" ; hgnc_id "HGNC:24222" ; level 2 ; orig_coord_info "chr5,55172938,55173000,-" ; protein_id "ENSP00000296733.1" ; tag basic appris_principal_4 CCDS ; transcript_id "PRELID2--CDC20B^ENST00000296733.5" ; transcript_name "CDC20B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRELID2--CDC20B HAVANA gene 1066 12830 . + . FI_gene_label "PRELID2^ENSG00000186314.11" ; ID "PRELID2--CDC20B^PRELID2^ENSG00000186314.11" ; ccdsid "CCDS34262.1" ; exon_id "ENSE00002076814.1" ; exon_number 1 ; gene_id "PRELID2--CDC20B^PRELID2^ENSG00000186314.11" ; gene_name PRELID2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163384.4" ; havana_transcript "OTTHUMT00000372970.1" ; hgnc_id "HGNC:28306" ; level 2 ; orig_coord_info "chr5,145835177,145835251,-" ; protein_id "ENSP00000335675.4" ; tag basic CCDS ; transcript_id "PRELID2--CDC20B^ENST00000334744.8" ; transcript_name "PRELID2-201" ; transcript_support_level 2 ; transcript_type protein_coding
PRELID2--CDC20B HAVANA mRNA 1066 12830 . + . FI_gene_label "PRELID2^ENSG00000186314.11" ; ID "PRELID2--CDC20B^ENST00000334744.8" ; Parent "PRELID2--CDC20B^PRELID2^ENSG00000186314.11" ; ccdsid "CCDS34262.1" ; exon_id "ENSE00002076814.1" ; exon_number 1 ; gene_id "PRELID2--CDC20B^PRELID2^ENSG00000186314.11" ; gene_name PRELID2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163384.4" ; havana_transcript "OTTHUMT00000372970.1" ; hgnc_id "HGNC:28306" ; level 2 ; orig_coord_info "chr5,145835177,145835251,-" ; protein_id "ENSP00000335675.4" ; tag basic CCDS ; transcript_id "PRELID2--CDC20B^ENST00000334744.8" ; transcript_name "PRELID2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PTPRK--DEFA9P HAVANA gene 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--DEFA9P^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--DEFA9P^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--DEFA9P^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
PTPRK--DEFA9P HAVANA mRNA 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--DEFA9P^ENST00000368207.7" ; Parent "PTPRK--DEFA9P^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--DEFA9P^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--DEFA9P^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTPRK--MFHAS1 HAVANA gene 53093 64960 . + . FI_gene_label "MFHAS1^ENSG00000147324.11" ; ID "PTPRK--MFHAS1^MFHAS1^ENSG00000147324.11" ; ccdsid "CCDS34844.1" ; exon_id "ENSE00001019493.7" ; exon_number 1 ; gene_id "PTPRK--MFHAS1^MFHAS1^ENSG00000147324.11" ; gene_name MFHAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163676.3" ; havana_transcript "OTTHUMT00000374724.3" ; hgnc_id "HGNC:16982" ; level 2 ; orig_coord_info "chr8,8890061,8893058,-" ; protein_id "ENSP00000276282.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTPRK--MFHAS1^ENST00000276282.7" ; transcript_name "MFHAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPRK--MFHAS1 HAVANA mRNA 53093 64960 . + . FI_gene_label "MFHAS1^ENSG00000147324.11" ; ID "PTPRK--MFHAS1^ENST00000276282.7" ; Parent "PTPRK--MFHAS1^MFHAS1^ENSG00000147324.11" ; ccdsid "CCDS34844.1" ; exon_id "ENSE00001019493.7" ; exon_number 1 ; gene_id "PTPRK--MFHAS1^MFHAS1^ENSG00000147324.11" ; gene_name MFHAS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163676.3" ; havana_transcript "OTTHUMT00000374724.3" ; hgnc_id "HGNC:16982" ; level 2 ; orig_coord_info "chr8,8890061,8893058,-" ; protein_id "ENSP00000276282.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTPRK--MFHAS1^ENST00000276282.7" ; transcript_name "MFHAS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPRK--MFHAS1 HAVANA gene 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--MFHAS1^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--MFHAS1^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--MFHAS1^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
PTPRK--MFHAS1 HAVANA mRNA 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--MFHAS1^ENST00000368207.7" ; Parent "PTPRK--MFHAS1^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--MFHAS1^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--MFHAS1^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RNASET2--USP6NL HAVANA gene 1608 18022 . + . FI_gene_label "RNASET2^ENSG00000026297.16" ; ID "RNASET2--USP6NL^RNASET2^ENSG00000026297.16" ; exon_id "ENSE00001855489.2" ; exon_number 1 ; gene_id "RNASET2--USP6NL^RNASET2^ENSG00000026297.16" ; gene_name RNASET2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016009.8" ; havana_transcript "OTTHUMT00000363151.1" ; hgnc_id "HGNC:21686" ; level 2 ; orig_coord_info "chr6,166956097,166956182,-" ; protein_id "ENSP00000028008.5" ; transcript_id "RNASET2--USP6NL^ENST00000028008.9" ; transcript_name "RNASET2-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
RNASET2--USP6NL HAVANA mRNA 1608 18022 . + . FI_gene_label "RNASET2^ENSG00000026297.16" ; ID "RNASET2--USP6NL^ENST00000028008.9" ; Parent "RNASET2--USP6NL^RNASET2^ENSG00000026297.16" ; exon_id "ENSE00001855489.2" ; exon_number 1 ; gene_id "RNASET2--USP6NL^RNASET2^ENSG00000026297.16" ; gene_name RNASET2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016009.8" ; havana_transcript "OTTHUMT00000363151.1" ; hgnc_id "HGNC:21686" ; level 2 ; orig_coord_info "chr6,166956097,166956182,-" ; protein_id "ENSP00000028008.5" ; transcript_id "RNASET2--USP6NL^ENST00000028008.9" ; transcript_name "RNASET2-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
RNASET2--USP6NL ENSEMBL gene 35690 51881 . + . FI_gene_label "USP6NL^ENSG00000148429.14" ; ID "RNASET2--USP6NL^USP6NL^ENSG00000148429.14" ; ccdsid "CCDS44357.1" ; exon_id "ENSE00001781080.1" ; exon_number 1 ; gene_id "RNASET2--USP6NL^USP6NL^ENSG00000148429.14" ; gene_name USP6NL ; gene_type protein_coding ; havana_gene "OTTHUMG00000017672.6" ; hgnc_id "HGNC:16858" ; level 3 ; orig_coord_info "chr10,11532178,11532232,-" ; protein_id "ENSP00000277575.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "RNASET2--USP6NL^ENST00000277575.5" ; transcript_name "USP6NL-201" ; transcript_support_level 5 ; transcript_type protein_coding
RNASET2--USP6NL ENSEMBL mRNA 35690 51881 . + . FI_gene_label "USP6NL^ENSG00000148429.14" ; ID "RNASET2--USP6NL^ENST00000277575.5" ; Parent "RNASET2--USP6NL^USP6NL^ENSG00000148429.14" ; ccdsid "CCDS44357.1" ; exon_id "ENSE00001781080.1" ; exon_number 1 ; gene_id "RNASET2--USP6NL^USP6NL^ENSG00000148429.14" ; gene_name USP6NL ; gene_type protein_coding ; havana_gene "OTTHUMG00000017672.6" ; hgnc_id "HGNC:16858" ; level 3 ; orig_coord_info "chr10,11532178,11532232,-" ; protein_id "ENSP00000277575.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "RNASET2--USP6NL^ENST00000277575.5" ; transcript_name "USP6NL-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RSRC1--DMRT1 HAVANA gene 3340 20895 . + . FI_gene_label "RSRC1^ENSG00000174891.13" ; ID "RSRC1--DMRT1^RSRC1^ENSG00000174891.13" ; ccdsid "CCDS3181.1" ; exon_id "ENSE00003660240.1" ; exon_number 2 ; gene_id "RSRC1--DMRT1^RSRC1^ENSG00000174891.13" ; gene_name RSRC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158758.14" ; havana_transcript "OTTHUMT00000352063.2" ; hgnc_id "HGNC:24152" ; level 2 ; orig_coord_info "chr3,158122105,158122298,+" ; protein_id "ENSP00000295930.3" ; tag basic appris_principal_1 CCDS ; transcript_id "RSRC1--DMRT1^ENST00000295930.7" ; transcript_name "RSRC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RSRC1--DMRT1 HAVANA mRNA 3340 20895 . + . FI_gene_label "RSRC1^ENSG00000174891.13" ; ID "RSRC1--DMRT1^ENST00000295930.7" ; Parent "RSRC1--DMRT1^RSRC1^ENSG00000174891.13" ; ccdsid "CCDS3181.1" ; exon_id "ENSE00003660240.1" ; exon_number 2 ; gene_id "RSRC1--DMRT1^RSRC1^ENSG00000174891.13" ; gene_name RSRC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158758.14" ; havana_transcript "OTTHUMT00000352063.2" ; hgnc_id "HGNC:24152" ; level 2 ; orig_coord_info "chr3,158122105,158122298,+" ; protein_id "ENSP00000295930.3" ; tag basic appris_principal_1 CCDS ; transcript_id "RSRC1--DMRT1^ENST00000295930.7" ; transcript_name "RSRC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RSRC1--DMRT1 HAVANA gene 24798 32564 . + . FI_gene_label "DMRT1^ENSG00000137090.12" ; ID "RSRC1--DMRT1^DMRT1^ENSG00000137090.12" ; ccdsid "CCDS6442.1" ; exon_id "ENSE00003458315.2" ; exon_number 1 ; gene_id "RSRC1--DMRT1^DMRT1^ENSG00000137090.12" ; gene_name DMRT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019435.3" ; havana_transcript "OTTHUMT00000051489.3" ; hgnc_id "HGNC:2934" ; level 2 ; orig_coord_info "chr9,841839,842192,+" ; protein_id "ENSP00000371711.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RSRC1--DMRT1^ENST00000382276.8" ; transcript_name "DMRT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RSRC1--DMRT1 HAVANA mRNA 24798 32564 . + . FI_gene_label "DMRT1^ENSG00000137090.12" ; ID "RSRC1--DMRT1^ENST00000382276.8" ; Parent "RSRC1--DMRT1^DMRT1^ENSG00000137090.12" ; ccdsid "CCDS6442.1" ; exon_id "ENSE00003458315.2" ; exon_number 1 ; gene_id "RSRC1--DMRT1^DMRT1^ENSG00000137090.12" ; gene_name DMRT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019435.3" ; havana_transcript "OTTHUMT00000051489.3" ; hgnc_id "HGNC:2934" ; level 2 ; orig_coord_info "chr9,841839,842192,+" ; protein_id "ENSP00000371711.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RSRC1--DMRT1^ENST00000382276.8" ; transcript_name "DMRT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RSRC1--KANK1 HAVANA gene 3340 20895 . + . FI_gene_label "RSRC1^ENSG00000174891.13" ; ID "RSRC1--KANK1^RSRC1^ENSG00000174891.13" ; ccdsid "CCDS3181.1" ; exon_id "ENSE00003660240.1" ; exon_number 2 ; gene_id "RSRC1--KANK1^RSRC1^ENSG00000174891.13" ; gene_name RSRC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158758.14" ; havana_transcript "OTTHUMT00000352063.2" ; hgnc_id "HGNC:24152" ; level 2 ; orig_coord_info "chr3,158122105,158122298,+" ; protein_id "ENSP00000295930.3" ; tag basic appris_principal_1 CCDS ; transcript_id "RSRC1--KANK1^ENST00000295930.7" ; transcript_name "RSRC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RSRC1--KANK1 HAVANA mRNA 3340 20895 . + . FI_gene_label "RSRC1^ENSG00000174891.13" ; ID "RSRC1--KANK1^ENST00000295930.7" ; Parent "RSRC1--KANK1^RSRC1^ENSG00000174891.13" ; ccdsid "CCDS3181.1" ; exon_id "ENSE00003660240.1" ; exon_number 2 ; gene_id "RSRC1--KANK1^RSRC1^ENSG00000174891.13" ; gene_name RSRC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158758.14" ; havana_transcript "OTTHUMT00000352063.2" ; hgnc_id "HGNC:24152" ; level 2 ; orig_coord_info "chr3,158122105,158122298,+" ; protein_id "ENSP00000295930.3" ; tag basic appris_principal_1 CCDS ; transcript_id "RSRC1--KANK1^ENST00000295930.7" ; transcript_name "RSRC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RSRC1--KANK1 HAVANA gene 46183 53393 . + . FI_gene_label "KANK1^ENSG00000107104.20" ; ID "RSRC1--KANK1^KANK1^ENSG00000107104.20" ; exon_id "ENSE00001633361.1" ; exon_number 1 ; gene_id "RSRC1--KANK1^KANK1^ENSG00000107104.20" ; gene_name KANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019434.7" ; havana_transcript "OTTHUMT00000051487.3" ; hgnc_id "HGNC:19309" ; level 2 ; orig_coord_info "chr9,734748,734835,+" ; protein_id "ENSP00000371723.3" ; tag mRNA_start_NF cds_start_NF retained_intron_final ; transcript_id "RSRC1--KANK1^ENST00000382286.2" ; transcript_name "KANK1-202" ; transcript_support_level 2 ; transcript_type protein_coding
RSRC1--KANK1 HAVANA mRNA 46183 53393 . + . FI_gene_label "KANK1^ENSG00000107104.20" ; ID "RSRC1--KANK1^ENST00000382286.2" ; Parent "RSRC1--KANK1^KANK1^ENSG00000107104.20" ; exon_id "ENSE00001633361.1" ; exon_number 1 ; gene_id "RSRC1--KANK1^KANK1^ENSG00000107104.20" ; gene_name KANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019434.7" ; havana_transcript "OTTHUMT00000051487.3" ; hgnc_id "HGNC:19309" ; level 2 ; orig_coord_info "chr9,734748,734835,+" ; protein_id "ENSP00000371723.3" ; tag mRNA_start_NF cds_start_NF retained_intron_final ; transcript_id "RSRC1--KANK1^ENST00000382286.2" ; transcript_name "KANK1-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SCMH1--TMIGD3 HAVANA gene 5186 23599 . + . FI_gene_label "SCMH1^ENSG00000010803.16" ; ID "SCMH1--TMIGD3^SCMH1^ENSG00000010803.16" ; ccdsid "CCDS30688.1" ; exon_id "ENSE00001146734.5" ; exon_number 3 ; gene_id "SCMH1--TMIGD3^SCMH1^ENSG00000010803.16" ; gene_name SCMH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000005720.3" ; havana_transcript "OTTHUMT00000015656.1" ; hgnc_id "HGNC:19003" ; level 2 ; orig_coord_info "chr1,41152599,41152674,-" ; protein_id "ENSP00000318094.7" ; tag basic appris_principal_4 CCDS ; transcript_id "SCMH1--TMIGD3^ENST00000326197.11" ; transcript_name "SCMH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SCMH1--TMIGD3 HAVANA mRNA 5186 23599 . + . FI_gene_label "SCMH1^ENSG00000010803.16" ; ID "SCMH1--TMIGD3^ENST00000326197.11" ; Parent "SCMH1--TMIGD3^SCMH1^ENSG00000010803.16" ; ccdsid "CCDS30688.1" ; exon_id "ENSE00001146734.5" ; exon_number 3 ; gene_id "SCMH1--TMIGD3^SCMH1^ENSG00000010803.16" ; gene_name SCMH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000005720.3" ; havana_transcript "OTTHUMT00000015656.1" ; hgnc_id "HGNC:19003" ; level 2 ; orig_coord_info "chr1,41152599,41152674,-" ; protein_id "ENSP00000318094.7" ; tag basic appris_principal_4 CCDS ; transcript_id "SCMH1--TMIGD3^ENST00000326197.11" ; transcript_name "SCMH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SCMH1--TMIGD3 HAVANA gene 27719 35181 . + . FI_gene_label "TMIGD3^ENSG00000121933.19" ; ID "SCMH1--TMIGD3^TMIGD3^ENSG00000121933.19" ; ccdsid "CCDS838.1" ; exon_id "ENSE00001848893.2" ; exon_number 1 ; gene_id "SCMH1--TMIGD3^TMIGD3^ENSG00000121933.19" ; gene_name TMIGD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000190810.2" ; havana_transcript "OTTHUMT00000157679.3" ; hgnc_id "HGNC:51375" ; level 2 ; orig_coord_info "chr1,111503005,111503354,-" ; protein_id "ENSP00000358730.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCMH1--TMIGD3^ENST00000369716.9" ; transcript_name "TMIGD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
SCMH1--TMIGD3 HAVANA mRNA 27719 35181 . + . FI_gene_label "TMIGD3^ENSG00000121933.19" ; ID "SCMH1--TMIGD3^ENST00000369716.9" ; Parent "SCMH1--TMIGD3^TMIGD3^ENSG00000121933.19" ; ccdsid "CCDS838.1" ; exon_id "ENSE00001848893.2" ; exon_number 1 ; gene_id "SCMH1--TMIGD3^TMIGD3^ENSG00000121933.19" ; gene_name TMIGD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000190810.2" ; havana_transcript "OTTHUMT00000157679.3" ; hgnc_id "HGNC:51375" ; level 2 ; orig_coord_info "chr1,111503005,111503354,-" ; protein_id "ENSP00000358730.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SCMH1--TMIGD3^ENST00000369716.9" ; transcript_name "TMIGD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SF3B1--FRMD4A HAVANA gene 41501 69310 . + . FI_gene_label "FRMD4A^ENSG00000151474.23" ; ID "SF3B1--FRMD4A^FRMD4A^ENSG00000151474.23" ; exon_id "ENSE00001699048.1" ; exon_number 1 ; gene_id "SF3B1--FRMD4A^FRMD4A^ENSG00000151474.23" ; gene_name FRMD4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017708.10" ; havana_transcript "OTTHUMT00000046891.2" ; hgnc_id "HGNC:25491" ; level 2 ; orig_coord_info "chr10,13971656,13971799,-" ; protein_id "ENSP00000264546.6" ; tag CAGE_supported_TSS mRNA_end_NF cds_end_NF ; transcript_id "SF3B1--FRMD4A^ENST00000264546.10" ; transcript_name "FRMD4A-201" ; transcript_support_level 2 ; transcript_type protein_coding
SF3B1--FRMD4A HAVANA mRNA 41501 69310 . + . FI_gene_label "FRMD4A^ENSG00000151474.23" ; ID "SF3B1--FRMD4A^ENST00000264546.10" ; Parent "SF3B1--FRMD4A^FRMD4A^ENSG00000151474.23" ; exon_id "ENSE00001699048.1" ; exon_number 1 ; gene_id "SF3B1--FRMD4A^FRMD4A^ENSG00000151474.23" ; gene_name FRMD4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017708.10" ; havana_transcript "OTTHUMT00000046891.2" ; hgnc_id "HGNC:25491" ; level 2 ; orig_coord_info "chr10,13971656,13971799,-" ; protein_id "ENSP00000264546.6" ; tag CAGE_supported_TSS mRNA_end_NF cds_end_NF ; transcript_id "SF3B1--FRMD4A^ENST00000264546.10" ; transcript_name "FRMD4A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SF3B1--FRMD4A HAVANA gene 1052 24238 . + . FI_gene_label "SF3B1^ENSG00000115524.17" ; ID "SF3B1--FRMD4A^SF3B1^ENSG00000115524.17" ; ccdsid "CCDS33356.1" ; exon_id "ENSE00001858642.2" ; exon_number 1 ; gene_id "SF3B1--FRMD4A^SF3B1^ENSG00000115524.17" ; gene_name SF3B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154447.6" ; havana_transcript "OTTHUMT00000335245.3" ; hgnc_id "HGNC:10768" ; level 2 ; orig_coord_info "chr2,197434972,197434999,-" ; protein_id "ENSP00000335321.6" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "SF3B1--FRMD4A^ENST00000335508.11" ; transcript_name "SF3B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SF3B1--FRMD4A HAVANA mRNA 1052 24238 . + . FI_gene_label "SF3B1^ENSG00000115524.17" ; ID "SF3B1--FRMD4A^ENST00000335508.11" ; Parent "SF3B1--FRMD4A^SF3B1^ENSG00000115524.17" ; ccdsid "CCDS33356.1" ; exon_id "ENSE00001858642.2" ; exon_number 1 ; gene_id "SF3B1--FRMD4A^SF3B1^ENSG00000115524.17" ; gene_name SF3B1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000154447.6" ; havana_transcript "OTTHUMT00000335245.3" ; hgnc_id "HGNC:10768" ; level 2 ; orig_coord_info "chr2,197434972,197434999,-" ; protein_id "ENSP00000335321.6" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "SF3B1--FRMD4A^ENST00000335508.11" ; transcript_name "SF3B1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC1A1--CSMD1 HAVANA gene 1001 16419 . + . FI_gene_label "SLC1A1^ENSG00000106688.12" ; ID "SLC1A1--CSMD1^SLC1A1^ENSG00000106688.12" ; ccdsid "CCDS6452.1" ; exon_id "ENSE00002250590.2" ; exon_number 1 ; gene_id "SLC1A1--CSMD1^SLC1A1^ENSG00000106688.12" ; gene_name SLC1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019468.3" ; havana_transcript "OTTHUMT00000051571.2" ; hgnc_id "HGNC:10939" ; level 2 ; orig_coord_info "chr9,4490680,4490770,+" ; protein_id "ENSP00000262352.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC1A1--CSMD1^ENST00000262352.8" ; transcript_name "SLC1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC1A1--CSMD1 HAVANA mRNA 1001 16419 . + . FI_gene_label "SLC1A1^ENSG00000106688.12" ; ID "SLC1A1--CSMD1^ENST00000262352.8" ; Parent "SLC1A1--CSMD1^SLC1A1^ENSG00000106688.12" ; ccdsid "CCDS6452.1" ; exon_id "ENSE00002250590.2" ; exon_number 1 ; gene_id "SLC1A1--CSMD1^SLC1A1^ENSG00000106688.12" ; gene_name SLC1A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019468.3" ; havana_transcript "OTTHUMT00000051571.2" ; hgnc_id "HGNC:10939" ; level 2 ; orig_coord_info "chr9,4490680,4490770,+" ; protein_id "ENSP00000262352.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC1A1--CSMD1^ENST00000262352.8" ; transcript_name "SLC1A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC1A1--CSMD1 HAVANA gene 40275 116045 . + . FI_gene_label "CSMD1^ENSG00000183117.19" ; ID "SLC1A1--CSMD1^CSMD1^ENSG00000183117.19" ; exon_id "ENSE00001764219.1" ; exon_number 1 ; gene_id "SLC1A1--CSMD1^CSMD1^ENSG00000183117.19" ; gene_name CSMD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163605.8" ; havana_transcript "OTTHUMT00000374654.2" ; hgnc_id "HGNC:14026" ; level 1 ; orig_coord_info "chr8,3409423,3409607,-" ; protein_id "ENSP00000334828.6" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SLC1A1--CSMD1^ENST00000335551.11" ; transcript_name "CSMD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC1A1--CSMD1 HAVANA mRNA 40275 116045 . + . FI_gene_label "CSMD1^ENSG00000183117.19" ; ID "SLC1A1--CSMD1^ENST00000335551.11" ; Parent "SLC1A1--CSMD1^CSMD1^ENSG00000183117.19" ; exon_id "ENSE00001764219.1" ; exon_number 1 ; gene_id "SLC1A1--CSMD1^CSMD1^ENSG00000183117.19" ; gene_name CSMD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163605.8" ; havana_transcript "OTTHUMT00000374654.2" ; hgnc_id "HGNC:14026" ; level 1 ; orig_coord_info "chr8,3409423,3409607,-" ; protein_id "ENSP00000334828.6" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "SLC1A1--CSMD1^ENST00000335551.11" ; transcript_name "CSMD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMOC2--AP000146.1 HAVANA gene 1001 18358 . + . FI_gene_label "SMOC2^ENSG00000112562.19" ; ID "SMOC2--AP000146.1^SMOC2^ENSG00000112562.19" ; ccdsid "CCDS5307.1" ; exon_id "ENSE00001442632.1" ; exon_number 1 ; gene_id "SMOC2--AP000146.1^SMOC2^ENSG00000112562.19" ; gene_name SMOC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016050.5" ; havana_transcript "OTTHUMT00000043202.1" ; hgnc_id "HGNC:20323" ; level 2 ; orig_coord_info "chr6,168441371,168441454,+" ; protein_id "ENSP00000346537.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "SMOC2--AP000146.1^ENST00000354536.9" ; transcript_name "SMOC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMOC2--AP000146.1 HAVANA mRNA 1001 18358 . + . FI_gene_label "SMOC2^ENSG00000112562.19" ; ID "SMOC2--AP000146.1^ENST00000354536.9" ; Parent "SMOC2--AP000146.1^SMOC2^ENSG00000112562.19" ; ccdsid "CCDS5307.1" ; exon_id "ENSE00001442632.1" ; exon_number 1 ; gene_id "SMOC2--AP000146.1^SMOC2^ENSG00000112562.19" ; gene_name SMOC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016050.5" ; havana_transcript "OTTHUMT00000043202.1" ; hgnc_id "HGNC:20323" ; level 2 ; orig_coord_info "chr6,168441371,168441454,+" ; protein_id "ENSP00000346537.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "SMOC2--AP000146.1^ENST00000354536.9" ; transcript_name "SMOC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMURF1--CHRM2 HAVANA gene 29368 36849 . + . FI_gene_label "CHRM2^ENSG00000181072.12" ; ID "SMURF1--CHRM2^CHRM2^ENSG00000181072.12" ; ccdsid "CCDS5843.1" ; exon_id "ENSE00001905474.1" ; exon_number 3 ; gene_id "SMURF1--CHRM2^CHRM2^ENSG00000181072.12" ; gene_name CHRM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155658.3" ; havana_transcript "OTTHUMT00000341016.2" ; hgnc_id "HGNC:1951" ; level 2 ; orig_coord_info "chr7,137014866,137016263,+" ; protein_id "ENSP00000319984.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SMURF1--CHRM2^ENST00000320658.9" ; transcript_name "CHRM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMURF1--CHRM2 HAVANA mRNA 29368 36849 . + . FI_gene_label "CHRM2^ENSG00000181072.12" ; ID "SMURF1--CHRM2^ENST00000320658.9" ; Parent "SMURF1--CHRM2^CHRM2^ENSG00000181072.12" ; ccdsid "CCDS5843.1" ; exon_id "ENSE00001905474.1" ; exon_number 3 ; gene_id "SMURF1--CHRM2^CHRM2^ENSG00000181072.12" ; gene_name CHRM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155658.3" ; havana_transcript "OTTHUMT00000341016.2" ; hgnc_id "HGNC:1951" ; level 2 ; orig_coord_info "chr7,137014866,137016263,+" ; protein_id "ENSP00000319984.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SMURF1--CHRM2^ENST00000320658.9" ; transcript_name "CHRM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMURF1--CHRM2 HAVANA gene 1009 25933 . + . FI_gene_label "SMURF1^ENSG00000198742.10" ; ID "SMURF1--CHRM2^SMURF1^ENSG00000198742.10" ; ccdsid "CCDS34690.1" ; exon_id "ENSE00001128723.4" ; exon_number 1 ; gene_id "SMURF1--CHRM2^SMURF1^ENSG00000198742.10" ; gene_name SMURF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150272.3" ; havana_transcript "OTTHUMT00000335001.2" ; hgnc_id "HGNC:16807" ; level 2 ; orig_coord_info "chr7,99143726,99143780,-" ; protein_id "ENSP00000354621.1" ; tag basic CCDS ; transcript_id "SMURF1--CHRM2^ENST00000361125.1" ; transcript_name "SMURF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMURF1--CHRM2 HAVANA mRNA 1009 25933 . + . FI_gene_label "SMURF1^ENSG00000198742.10" ; ID "SMURF1--CHRM2^ENST00000361125.1" ; Parent "SMURF1--CHRM2^SMURF1^ENSG00000198742.10" ; ccdsid "CCDS34690.1" ; exon_id "ENSE00001128723.4" ; exon_number 1 ; gene_id "SMURF1--CHRM2^SMURF1^ENSG00000198742.10" ; gene_name SMURF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150272.3" ; havana_transcript "OTTHUMT00000335001.2" ; hgnc_id "HGNC:16807" ; level 2 ; orig_coord_info "chr7,99143726,99143780,-" ; protein_id "ENSP00000354621.1" ; tag basic CCDS ; transcript_id "SMURF1--CHRM2^ENST00000361125.1" ; transcript_name "SMURF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRPK2--LINC01449 HAVANA gene 7189 25319 . + . FI_gene_label "SRPK2^ENSG00000135250.17" ; ID "SRPK2--LINC01449^SRPK2^ENSG00000135250.17" ; ccdsid "CCDS5735.1" ; exon_id "ENSE00001414518.3" ; exon_number 1 ; gene_id "SRPK2--LINC01449^SRPK2^ENSG00000135250.17" ; gene_name SRPK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157405.3" ; havana_transcript "OTTHUMT00000348716.1" ; hgnc_id "HGNC:11306" ; level 2 ; orig_coord_info "chr7,105268806,105268843,-" ; protein_id "ENSP00000349863.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "SRPK2--LINC01449^ENST00000357311.7" ; transcript_name "SRPK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SRPK2--LINC01449 HAVANA mRNA 7189 25319 . + . FI_gene_label "SRPK2^ENSG00000135250.17" ; ID "SRPK2--LINC01449^ENST00000357311.7" ; Parent "SRPK2--LINC01449^SRPK2^ENSG00000135250.17" ; ccdsid "CCDS5735.1" ; exon_id "ENSE00001414518.3" ; exon_number 1 ; gene_id "SRPK2--LINC01449^SRPK2^ENSG00000135250.17" ; gene_name SRPK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157405.3" ; havana_transcript "OTTHUMT00000348716.1" ; hgnc_id "HGNC:11306" ; level 2 ; orig_coord_info "chr7,105268806,105268843,-" ; protein_id "ENSP00000349863.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "SRPK2--LINC01449^ENST00000357311.7" ; transcript_name "SRPK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRPK2--LINC01450 HAVANA gene 7189 25319 . + . FI_gene_label "SRPK2^ENSG00000135250.17" ; ID "SRPK2--LINC01450^SRPK2^ENSG00000135250.17" ; ccdsid "CCDS5735.1" ; exon_id "ENSE00001414518.3" ; exon_number 1 ; gene_id "SRPK2--LINC01450^SRPK2^ENSG00000135250.17" ; gene_name SRPK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157405.3" ; havana_transcript "OTTHUMT00000348716.1" ; hgnc_id "HGNC:11306" ; level 2 ; orig_coord_info "chr7,105268806,105268843,-" ; protein_id "ENSP00000349863.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "SRPK2--LINC01450^ENST00000357311.7" ; transcript_name "SRPK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SRPK2--LINC01450 HAVANA mRNA 7189 25319 . + . FI_gene_label "SRPK2^ENSG00000135250.17" ; ID "SRPK2--LINC01450^ENST00000357311.7" ; Parent "SRPK2--LINC01450^SRPK2^ENSG00000135250.17" ; ccdsid "CCDS5735.1" ; exon_id "ENSE00001414518.3" ; exon_number 1 ; gene_id "SRPK2--LINC01450^SRPK2^ENSG00000135250.17" ; gene_name SRPK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157405.3" ; havana_transcript "OTTHUMT00000348716.1" ; hgnc_id "HGNC:11306" ; level 2 ; orig_coord_info "chr7,105268806,105268843,-" ; protein_id "ENSP00000349863.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "SRPK2--LINC01450^ENST00000357311.7" ; transcript_name "SRPK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TET3--DGUOK HAVANA gene 28445 36199 . + . FI_gene_label "DGUOK^ENSG00000114956.20" ; ID "TET3--DGUOK^DGUOK^ENSG00000114956.20" ; ccdsid "CCDS1931.1" ; exon_id "ENSE00003842845.1" ; exon_number 1 ; gene_id "TET3--DGUOK^DGUOK^ENSG00000114956.20" ; gene_name DGUOK ; gene_type protein_coding ; havana_gene "OTTHUMG00000129819.4" ; havana_transcript "OTTHUMT00000252050.2" ; hgnc_id "HGNC:2858" ; level 2 ; orig_coord_info "chr2,73926911,73927052,+" ; protein_id "ENSP00000264093.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TET3--DGUOK^ENST00000264093.9" ; transcript_name "DGUOK-201" ; transcript_support_level 1 ; transcript_type protein_coding
TET3--DGUOK HAVANA mRNA 28445 36199 . + . FI_gene_label "DGUOK^ENSG00000114956.20" ; ID "TET3--DGUOK^ENST00000264093.9" ; Parent "TET3--DGUOK^DGUOK^ENSG00000114956.20" ; ccdsid "CCDS1931.1" ; exon_id "ENSE00003842845.1" ; exon_number 1 ; gene_id "TET3--DGUOK^DGUOK^ENSG00000114956.20" ; gene_name DGUOK ; gene_type protein_coding ; havana_gene "OTTHUMG00000129819.4" ; havana_transcript "OTTHUMT00000252050.2" ; hgnc_id "HGNC:2858" ; level 2 ; orig_coord_info "chr2,73926911,73927052,+" ; protein_id "ENSP00000264093.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TET3--DGUOK^ENST00000264093.9" ; transcript_name "DGUOK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TET3--DGUOK HAVANA gene 5327 19390 . + . FI_gene_label "TET3^ENSG00000187605.16" ; ID "TET3--DGUOK^TET3^ENSG00000187605.16" ; exon_id "ENSE00001588346.1" ; exon_number 1 ; gene_id "TET3--DGUOK^TET3^ENSG00000187605.16" ; gene_name TET3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152823.8" ; havana_transcript "OTTHUMT00000376536.3" ; hgnc_id "HGNC:28313" ; level 2 ; orig_coord_info "chr2,74002778,74002801,+" ; protein_id "ENSP00000307803.8" ; tag not_organism_supported basic ; transcript_id "TET3--DGUOK^ENST00000305799.8" ; transcript_name "TET3-201" ; transcript_support_level 5 ; transcript_type protein_coding
TET3--DGUOK HAVANA mRNA 5327 19390 . + . FI_gene_label "TET3^ENSG00000187605.16" ; ID "TET3--DGUOK^ENST00000305799.8" ; Parent "TET3--DGUOK^TET3^ENSG00000187605.16" ; exon_id "ENSE00001588346.1" ; exon_number 1 ; gene_id "TET3--DGUOK^TET3^ENSG00000187605.16" ; gene_name TET3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152823.8" ; havana_transcript "OTTHUMT00000376536.3" ; hgnc_id "HGNC:28313" ; level 2 ; orig_coord_info "chr2,74002778,74002801,+" ; protein_id "ENSP00000307803.8" ; tag not_organism_supported basic ; transcript_id "TET3--DGUOK^ENST00000305799.8" ; transcript_name "TET3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1BP1L--ANKS1B HAVANA gene 1001 28010 . + . FI_gene_label "UHRF1BP1L^ENSG00000111647.13" ; ID "UHRF1BP1L--ANKS1B^UHRF1BP1L^ENSG00000111647.13" ; ccdsid "CCDS31882.1" ; exon_id "ENSE00002390690.2" ; exon_number 1 ; gene_id "UHRF1BP1L--ANKS1B^UHRF1BP1L^ENSG00000111647.13" ; gene_name UHRF1BP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000170195.4" ; havana_transcript "OTTHUMT00000407875.2" ; hgnc_id "HGNC:29102" ; level 2 ; orig_coord_info "chr12,100142592,100142635,-" ; protein_id "ENSP00000279907.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UHRF1BP1L--ANKS1B^ENST00000279907.12" ; transcript_name "UHRF1BP1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1BP1L--ANKS1B HAVANA mRNA 1001 28010 . + . FI_gene_label "UHRF1BP1L^ENSG00000111647.13" ; ID "UHRF1BP1L--ANKS1B^ENST00000279907.12" ; Parent "UHRF1BP1L--ANKS1B^UHRF1BP1L^ENSG00000111647.13" ; ccdsid "CCDS31882.1" ; exon_id "ENSE00002390690.2" ; exon_number 1 ; gene_id "UHRF1BP1L--ANKS1B^UHRF1BP1L^ENSG00000111647.13" ; gene_name UHRF1BP1L ; gene_type protein_coding ; havana_gene "OTTHUMG00000170195.4" ; havana_transcript "OTTHUMT00000407875.2" ; hgnc_id "HGNC:29102" ; level 2 ; orig_coord_info "chr12,100142592,100142635,-" ; protein_id "ENSP00000279907.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "UHRF1BP1L--ANKS1B^ENST00000279907.12" ; transcript_name "UHRF1BP1L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1BP1L--ANKS1B ENSEMBL gene 33718 40713 . + . FI_gene_label "ANKS1B^ENSG00000185046.18" ; ID "UHRF1BP1L--ANKS1B^ANKS1B^ENSG00000185046.18" ; exon_id "ENSE00003750013.1" ; exon_number 1 ; gene_id "UHRF1BP1L--ANKS1B^ANKS1B^ENSG00000185046.18" ; gene_name ANKS1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000170308.8" ; hgnc_id "HGNC:24600" ; level 3 ; orig_coord_info "chr12,99825309,99825391,-" ; protein_id "ENSP00000331381.8" ; tag basic ; transcript_id "UHRF1BP1L--ANKS1B^ENST00000329257.8" ; transcript_name "ANKS1B-201" ; transcript_support_level 5 ; transcript_type protein_coding
UHRF1BP1L--ANKS1B ENSEMBL mRNA 33718 40713 . + . FI_gene_label "ANKS1B^ENSG00000185046.18" ; ID "UHRF1BP1L--ANKS1B^ENST00000329257.8" ; Parent "UHRF1BP1L--ANKS1B^ANKS1B^ENSG00000185046.18" ; exon_id "ENSE00003750013.1" ; exon_number 1 ; gene_id "UHRF1BP1L--ANKS1B^ANKS1B^ENSG00000185046.18" ; gene_name ANKS1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000170308.8" ; hgnc_id "HGNC:24600" ; level 3 ; orig_coord_info "chr12,99825309,99825391,-" ; protein_id "ENSP00000331381.8" ; tag basic ; transcript_id "UHRF1BP1L--ANKS1B^ENST00000329257.8" ; transcript_name "ANKS1B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
UTRN--ROBO1 HAVANA gene 72296 80483 . + . FI_gene_label "UTRN^ENSG00000152818.18" ; ID "UTRN--ROBO1^UTRN^ENSG00000152818.18" ; exon_id "ENSE00002458940.1" ; exon_number 1 ; gene_id "UTRN--ROBO1^UTRN^ENSG00000152818.18" ; gene_name UTRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000015746.6" ; havana_transcript "OTTHUMT00000042557.2" ; hgnc_id "HGNC:12635" ; level 2 ; orig_coord_info "chr6,144789229,144789279,+" ; protein_id "ENSP00000356494.3" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "UTRN--ROBO1^ENST00000367524.7" ; transcript_name "UTRN-201" ; transcript_support_level 3 ; transcript_type protein_coding
UTRN--ROBO1 HAVANA mRNA 72296 80483 . + . FI_gene_label "UTRN^ENSG00000152818.18" ; ID "UTRN--ROBO1^ENST00000367524.7" ; Parent "UTRN--ROBO1^UTRN^ENSG00000152818.18" ; exon_id "ENSE00002458940.1" ; exon_number 1 ; gene_id "UTRN--ROBO1^UTRN^ENSG00000152818.18" ; gene_name UTRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000015746.6" ; havana_transcript "OTTHUMT00000042557.2" ; hgnc_id "HGNC:12635" ; level 2 ; orig_coord_info "chr6,144789229,144789279,+" ; protein_id "ENSP00000356494.3" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "UTRN--ROBO1^ENST00000367524.7" ; transcript_name "UTRN-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
UTRN--ROBO1 ENSEMBL gene 100145 136455 . + . FI_gene_label "ROBO1^ENSG00000169855.20" ; ID "UTRN--ROBO1^ROBO1^ENSG00000169855.20" ; exon_id "ENSE00003752288.1" ; exon_number 2 ; gene_id "UTRN--ROBO1^ROBO1^ENSG00000169855.20" ; gene_name ROBO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158843.5" ; hgnc_id "HGNC:10249" ; level 3 ; orig_coord_info "chr3,78938601,78938742,-" ; protein_id "ENSP00000406043.3" ; tag basic ; transcript_id "UTRN--ROBO1^ENST00000436010.6" ; transcript_name "ROBO1-201" ; transcript_support_level 5 ; transcript_type protein_coding
UTRN--ROBO1 ENSEMBL mRNA 100145 136455 . + . FI_gene_label "ROBO1^ENSG00000169855.20" ; ID "UTRN--ROBO1^ENST00000436010.6" ; Parent "UTRN--ROBO1^ROBO1^ENSG00000169855.20" ; exon_id "ENSE00003752288.1" ; exon_number 2 ; gene_id "UTRN--ROBO1^ROBO1^ENSG00000169855.20" ; gene_name ROBO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000158843.5" ; hgnc_id "HGNC:10249" ; level 3 ; orig_coord_info "chr3,78938601,78938742,-" ; protein_id "ENSP00000406043.3" ; tag basic ; transcript_id "UTRN--ROBO1^ENST00000436010.6" ; transcript_name "ROBO1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
WAC--AC025822.2 HAVANA gene 1821 22421 . + . FI_gene_label "WAC^ENSG00000095787.24" ; ID "WAC--AC025822.2^WAC^ENSG00000095787.24" ; ccdsid "CCDS7160.1" ; exon_id "ENSE00001823796.1" ; exon_number 1 ; gene_id "WAC--AC025822.2^WAC^ENSG00000095787.24" ; gene_name WAC ; gene_type protein_coding ; havana_gene "OTTHUMG00000017872.11" ; havana_transcript "OTTHUMT00000047360.4" ; hgnc_id "HGNC:17327" ; level 1 ; orig_coord_info "chr10,28533580,28533620,+" ; protein_id "ENSP00000311106.4" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "WAC--AC025822.2^ENST00000347934.8" ; transcript_name "WAC-202" ; transcript_support_level 5 ; transcript_type protein_coding
WAC--AC025822.2 HAVANA mRNA 1821 22421 . + . FI_gene_label "WAC^ENSG00000095787.24" ; ID "WAC--AC025822.2^ENST00000347934.8" ; Parent "WAC--AC025822.2^WAC^ENSG00000095787.24" ; ccdsid "CCDS7160.1" ; exon_id "ENSE00001823796.1" ; exon_number 1 ; gene_id "WAC--AC025822.2^WAC^ENSG00000095787.24" ; gene_name WAC ; gene_type protein_coding ; havana_gene "OTTHUMG00000017872.11" ; havana_transcript "OTTHUMT00000047360.4" ; hgnc_id "HGNC:17327" ; level 1 ; orig_coord_info "chr10,28533580,28533620,+" ; protein_id "ENSP00000311106.4" ; tag basic appris_alternative_1 exp_conf CCDS ; transcript_id "WAC--AC025822.2^ENST00000347934.8" ; transcript_name "WAC-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
WIPI2--INHBA HAVANA gene 24903 35062 . + . FI_gene_label "INHBA^ENSG00000122641.11" ; ID "WIPI2--INHBA^INHBA^ENSG00000122641.11" ; ccdsid "CCDS5464.1" ; exon_id "ENSE00001410336.2" ; exon_number 2 ; gene_id "WIPI2--INHBA^INHBA^ENSG00000122641.11" ; gene_name INHBA ; gene_type protein_coding ; havana_gene "OTTHUMG00000023574.5" ; havana_transcript "OTTHUMT00000250793.2" ; hgnc_id "HGNC:6066" ; level 2 ; orig_coord_info "chr7,41699987,41700374,-" ; protein_id "ENSP00000242208.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WIPI2--INHBA^ENST00000242208.5" ; transcript_name "INHBA-201" ; transcript_support_level 1 ; transcript_type protein_coding
WIPI2--INHBA HAVANA mRNA 24903 35062 . + . FI_gene_label "INHBA^ENSG00000122641.11" ; ID "WIPI2--INHBA^ENST00000242208.5" ; Parent "WIPI2--INHBA^INHBA^ENSG00000122641.11" ; ccdsid "CCDS5464.1" ; exon_id "ENSE00001410336.2" ; exon_number 2 ; gene_id "WIPI2--INHBA^INHBA^ENSG00000122641.11" ; gene_name INHBA ; gene_type protein_coding ; havana_gene "OTTHUMG00000023574.5" ; havana_transcript "OTTHUMT00000250793.2" ; hgnc_id "HGNC:6066" ; level 2 ; orig_coord_info "chr7,41699987,41700374,-" ; protein_id "ENSP00000242208.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "WIPI2--INHBA^ENST00000242208.5" ; transcript_name "INHBA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WIPI2--INHBA HAVANA gene 1038 20351 . + . FI_gene_label "WIPI2^ENSG00000157954.15" ; ID "WIPI2--INHBA^WIPI2^ENSG00000157954.15" ; ccdsid "CCDS5339.1" ; exon_id "ENSE00001926181.2" ; exon_number 1 ; gene_id "WIPI2--INHBA^WIPI2^ENSG00000157954.15" ; gene_name WIPI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121179.5" ; havana_transcript "OTTHUMT00000241669.3" ; hgnc_id "HGNC:32225" ; level 2 ; orig_coord_info "chr7,5190420,5190493,+" ; protein_id "ENSP00000288828.4" ; tag basic MANE_Select CCDS ; transcript_id "WIPI2--INHBA^ENST00000288828.9" ; transcript_name "WIPI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
WIPI2--INHBA HAVANA mRNA 1038 20351 . + . FI_gene_label "WIPI2^ENSG00000157954.15" ; ID "WIPI2--INHBA^ENST00000288828.9" ; Parent "WIPI2--INHBA^WIPI2^ENSG00000157954.15" ; ccdsid "CCDS5339.1" ; exon_id "ENSE00001926181.2" ; exon_number 1 ; gene_id "WIPI2--INHBA^WIPI2^ENSG00000157954.15" ; gene_name WIPI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121179.5" ; havana_transcript "OTTHUMT00000241669.3" ; hgnc_id "HGNC:32225" ; level 2 ; orig_coord_info "chr7,5190420,5190493,+" ; protein_id "ENSP00000288828.4" ; tag basic MANE_Select CCDS ; transcript_id "WIPI2--INHBA^ENST00000288828.9" ; transcript_name "WIPI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WIPI2--LINC01449 HAVANA gene 1038 20351 . + . FI_gene_label "WIPI2^ENSG00000157954.15" ; ID "WIPI2--LINC01449^WIPI2^ENSG00000157954.15" ; ccdsid "CCDS5339.1" ; exon_id "ENSE00001926181.2" ; exon_number 1 ; gene_id "WIPI2--LINC01449^WIPI2^ENSG00000157954.15" ; gene_name WIPI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121179.5" ; havana_transcript "OTTHUMT00000241669.3" ; hgnc_id "HGNC:32225" ; level 2 ; orig_coord_info "chr7,5190420,5190493,+" ; protein_id "ENSP00000288828.4" ; tag basic MANE_Select CCDS ; transcript_id "WIPI2--LINC01449^ENST00000288828.9" ; transcript_name "WIPI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
WIPI2--LINC01449 HAVANA mRNA 1038 20351 . + . FI_gene_label "WIPI2^ENSG00000157954.15" ; ID "WIPI2--LINC01449^ENST00000288828.9" ; Parent "WIPI2--LINC01449^WIPI2^ENSG00000157954.15" ; ccdsid "CCDS5339.1" ; exon_id "ENSE00001926181.2" ; exon_number 1 ; gene_id "WIPI2--LINC01449^WIPI2^ENSG00000157954.15" ; gene_name WIPI2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121179.5" ; havana_transcript "OTTHUMT00000241669.3" ; hgnc_id "HGNC:32225" ; level 2 ; orig_coord_info "chr7,5190420,5190493,+" ; protein_id "ENSP00000288828.4" ; tag basic MANE_Select CCDS ; transcript_id "WIPI2--LINC01449^ENST00000288828.9" ; transcript_name "WIPI2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
YTHDF1--HELZ2 HAVANA gene 1001 6532 . + . FI_gene_label "YTHDF1^ENSG00000149658.18" ; ID "YTHDF1--HELZ2^YTHDF1^ENSG00000149658.18" ; exon_id "ENSE00001452423.4" ; exon_number 1 ; gene_id "YTHDF1--HELZ2^YTHDF1^ENSG00000149658.18" ; gene_name YTHDF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032955.4" ; havana_transcript "OTTHUMT00000080111.2" ; hgnc_id "HGNC:15867" ; level 1 ; orig_coord_info "chr20,63215866,63215892,-" ; protein_id "ENSP00000359359.4" ; tag basic exp_conf ; transcript_id "YTHDF1--HELZ2^ENST00000370334.4" ; transcript_name "YTHDF1-201" ; transcript_support_level 3 ; transcript_type protein_coding
YTHDF1--HELZ2 HAVANA mRNA 1001 6532 . + . FI_gene_label "YTHDF1^ENSG00000149658.18" ; ID "YTHDF1--HELZ2^ENST00000370334.4" ; Parent "YTHDF1--HELZ2^YTHDF1^ENSG00000149658.18" ; exon_id "ENSE00001452423.4" ; exon_number 1 ; gene_id "YTHDF1--HELZ2^YTHDF1^ENSG00000149658.18" ; gene_name YTHDF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032955.4" ; havana_transcript "OTTHUMT00000080111.2" ; hgnc_id "HGNC:15867" ; level 1 ; orig_coord_info "chr20,63215866,63215892,-" ; protein_id "ENSP00000359359.4" ; tag basic exp_conf ; transcript_id "YTHDF1--HELZ2^ENST00000370334.4" ; transcript_name "YTHDF1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
YTHDF1--HELZ2 HAVANA gene 16636 26624 . + . FI_gene_label "HELZ2^ENSG00000130589.16" ; ID "YTHDF1--HELZ2^HELZ2^ENSG00000130589.16" ; ccdsid "CCDS13527.1" ; exon_id "ENSE00001627872.2" ; exon_number 1 ; gene_id "YTHDF1--HELZ2^HELZ2^ENSG00000130589.16" ; gene_name HELZ2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032969.3" ; havana_transcript "OTTHUMT00000080139.2" ; hgnc_id "HGNC:30021" ; level 2 ; orig_coord_info "chr20,63566844,63567650,-" ; protein_id "ENSP00000393257.2" ; tag basic CCDS ; transcript_id "YTHDF1--HELZ2^ENST00000427522.6" ; transcript_name "HELZ2-202" ; transcript_support_level 1 ; transcript_type protein_coding
YTHDF1--HELZ2 HAVANA mRNA 16636 26624 . + . FI_gene_label "HELZ2^ENSG00000130589.16" ; ID "YTHDF1--HELZ2^ENST00000427522.6" ; Parent "YTHDF1--HELZ2^HELZ2^ENSG00000130589.16" ; ccdsid "CCDS13527.1" ; exon_id "ENSE00001627872.2" ; exon_number 1 ; gene_id "YTHDF1--HELZ2^HELZ2^ENSG00000130589.16" ; gene_name HELZ2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032969.3" ; havana_transcript "OTTHUMT00000080139.2" ; hgnc_id "HGNC:30021" ; level 2 ; orig_coord_info "chr20,63566844,63567650,-" ; protein_id "ENSP00000393257.2" ; tag basic CCDS ; transcript_id "YTHDF1--HELZ2^ENST00000427522.6" ; transcript_name "HELZ2-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF185--MKRN3 HAVANA gene 28179 30549 . + . FI_gene_label "MKRN3^ENSG00000179455.10" ; ID "ZNF185--MKRN3^MKRN3^ENSG00000179455.10" ; ccdsid "CCDS10013.1" ; exon_id "ENSE00001272708.8" ; exon_number 1 ; gene_id "ZNF185--MKRN3^MKRN3^ENSG00000179455.10" ; gene_name MKRN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129160.6" ; havana_transcript "OTTHUMT00000251225.3" ; hgnc_id "HGNC:7114" ; level 2 ; orig_coord_info "chr15,23565783,23567303,+" ; protein_id "ENSP00000313881.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF185--MKRN3^ENST00000314520.6" ; transcript_name "MKRN3-201" ; transcript_support_level NA ; transcript_type protein_coding
ZNF185--MKRN3 HAVANA mRNA 28179 30549 . + . FI_gene_label "MKRN3^ENSG00000179455.10" ; ID "ZNF185--MKRN3^ENST00000314520.6" ; Parent "ZNF185--MKRN3^MKRN3^ENSG00000179455.10" ; ccdsid "CCDS10013.1" ; exon_id "ENSE00001272708.8" ; exon_number 1 ; gene_id "ZNF185--MKRN3^MKRN3^ENSG00000179455.10" ; gene_name MKRN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129160.6" ; havana_transcript "OTTHUMT00000251225.3" ; hgnc_id "HGNC:7114" ; level 2 ; orig_coord_info "chr15,23565783,23567303,+" ; protein_id "ENSP00000313881.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF185--MKRN3^ENST00000314520.6" ; transcript_name "MKRN3-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
ZNF185--MKRN3 ENSEMBL gene 1001 25178 . + . FI_gene_label "ZNF185^ENSG00000147394.18" ; ID "ZNF185--MKRN3^ZNF185^ENSG00000147394.18" ; ccdsid "CCDS55531.1" ; exon_id "ENSE00003500701.1" ; exon_number 1 ; gene_id "ZNF185--MKRN3^ZNF185^ENSG00000147394.18" ; gene_name ZNF185 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024187.12" ; hgnc_id "HGNC:12976" ; level 3 ; orig_coord_info "chrX,152914490,152914523,+" ; protein_id "ENSP00000312782.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF185--MKRN3^ENST00000318504.11" ; transcript_name "ZNF185-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZNF185--MKRN3 ENSEMBL mRNA 1001 25178 . + . FI_gene_label "ZNF185^ENSG00000147394.18" ; ID "ZNF185--MKRN3^ENST00000318504.11" ; Parent "ZNF185--MKRN3^ZNF185^ENSG00000147394.18" ; ccdsid "CCDS55531.1" ; exon_id "ENSE00003500701.1" ; exon_number 1 ; gene_id "ZNF185--MKRN3^ZNF185^ENSG00000147394.18" ; gene_name ZNF185 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024187.12" ; hgnc_id "HGNC:12976" ; level 3 ; orig_coord_info "chrX,152914490,152914523,+" ; protein_id "ENSP00000312782.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF185--MKRN3^ENST00000318504.11" ; transcript_name "ZNF185-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZNF207--GLIS3 HAVANA gene 1001 13133 . + . FI_gene_label "ZNF207^ENSG00000010244.19" ; ID "ZNF207--GLIS3^ZNF207^ENSG00000010244.19" ; ccdsid "CCDS11271.1" ; exon_id "ENSE00001519162.2" ; exon_number 1 ; gene_id "ZNF207--GLIS3^ZNF207^ENSG00000010244.19" ; gene_name ZNF207 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132810.4" ; havana_transcript "OTTHUMT00000256251.2" ; hgnc_id "HGNC:12998" ; level 2 ; orig_coord_info "chr17,32350286,32350326,+" ; protein_id "ENSP00000322777.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF207--GLIS3^ENST00000321233.10" ; transcript_name "ZNF207-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF207--GLIS3 HAVANA mRNA 1001 13133 . + . FI_gene_label "ZNF207^ENSG00000010244.19" ; ID "ZNF207--GLIS3^ENST00000321233.10" ; Parent "ZNF207--GLIS3^ZNF207^ENSG00000010244.19" ; ccdsid "CCDS11271.1" ; exon_id "ENSE00001519162.2" ; exon_number 1 ; gene_id "ZNF207--GLIS3^ZNF207^ENSG00000010244.19" ; gene_name ZNF207 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132810.4" ; havana_transcript "OTTHUMT00000256251.2" ; hgnc_id "HGNC:12998" ; level 2 ; orig_coord_info "chr17,32350286,32350326,+" ; protein_id "ENSP00000322777.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF207--GLIS3^ENST00000321233.10" ; transcript_name "ZNF207-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF207--GLIS3 HAVANA gene 36822 63489 . + . FI_gene_label "GLIS3^ENSG00000107249.23" ; ID "ZNF207--GLIS3^GLIS3^ENSG00000107249.23" ; ccdsid "CCDS6451.1" ; exon_id "ENSE00003508620.1" ; exon_number 2 ; gene_id "ZNF207--GLIS3^GLIS3^ENSG00000107249.23" ; gene_name GLIS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019463.7" ; havana_transcript "OTTHUMT00000051559.1" ; hgnc_id "HGNC:28510" ; level 2 ; orig_coord_info "chr9,4125734,4125864,-" ; protein_id "ENSP00000325494.10" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF207--GLIS3^ENST00000324333.14" ; transcript_name "GLIS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF207--GLIS3 HAVANA mRNA 36822 63489 . + . FI_gene_label "GLIS3^ENSG00000107249.23" ; ID "ZNF207--GLIS3^ENST00000324333.14" ; Parent "ZNF207--GLIS3^GLIS3^ENSG00000107249.23" ; ccdsid "CCDS6451.1" ; exon_id "ENSE00003508620.1" ; exon_number 2 ; gene_id "ZNF207--GLIS3^GLIS3^ENSG00000107249.23" ; gene_name GLIS3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019463.7" ; havana_transcript "OTTHUMT00000051559.1" ; hgnc_id "HGNC:28510" ; level 2 ; orig_coord_info "chr9,4125734,4125864,-" ; protein_id "ENSP00000325494.10" ; tag basic appris_alternative_2 CCDS ; transcript_id "ZNF207--GLIS3^ENST00000324333.14" ; transcript_name "GLIS3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
CAMK1D--AC069114.1 HAVANA gene 23053 25339 . + . FI_gene_label "AC069114.1^ENSG00000265995.1" ; ID "CAMK1D--AC069114.1^AC069114.1^ENSG00000265995.1" ; exon_id "ENSE00002727881.1" ; exon_number 1 ; gene_id "CAMK1D--AC069114.1^AC069114.1^ENSG00000265995.1" ; gene_name "AC069114.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178795.1" ; havana_transcript "OTTHUMT00000443353.1" ; level 2 ; orig_coord_info "chr18,71944479,71944577,-" ; tag basic ; transcript_id "CAMK1D--AC069114.1^ENST00000580927.1" ; transcript_name "AC069114.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
CAMK1D--AC069114.1 HAVANA RNA 23053 25339 . + . FI_gene_label "AC069114.1^ENSG00000265995.1" ; ID "CAMK1D--AC069114.1^ENST00000580927.1" ; Parent "CAMK1D--AC069114.1^AC069114.1^ENSG00000265995.1" ; exon_id "ENSE00002727881.1" ; exon_number 1 ; gene_id "CAMK1D--AC069114.1^AC069114.1^ENSG00000265995.1" ; gene_name "AC069114.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178795.1" ; havana_transcript "OTTHUMT00000443353.1" ; level 2 ; orig_coord_info "chr18,71944479,71944577,-" ; tag basic ; transcript_id "CAMK1D--AC069114.1^ENST00000580927.1" ; transcript_name "AC069114.1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
COPB2--AC133530.1 HAVANA gene 33202 35760 . + . FI_gene_label "AC133530.1^ENSG00000286734.1" ; ID "COPB2--AC133530.1^AC133530.1^ENSG00000286734.1" ; exon_id "ENSE00003859414.1" ; exon_number 1 ; gene_id "COPB2--AC133530.1^AC133530.1^ENSG00000286734.1" ; gene_name "AC133530.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194078.1" ; havana_transcript "OTTHUMT00000510381.1" ; level 2 ; orig_coord_info "chr4,124338863,124339047,-" ; tag basic TAGENE ; transcript_id "COPB2--AC133530.1^ENST00000669259.1" ; transcript_name "AC133530.1-201" ; transcript_type lncRNA
COPB2--AC133530.1 HAVANA RNA 33202 35760 . + . FI_gene_label "AC133530.1^ENSG00000286734.1" ; ID "COPB2--AC133530.1^ENST00000669259.1" ; Parent "COPB2--AC133530.1^AC133530.1^ENSG00000286734.1" ; exon_id "ENSE00003859414.1" ; exon_number 1 ; gene_id "COPB2--AC133530.1^AC133530.1^ENSG00000286734.1" ; gene_name "AC133530.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194078.1" ; havana_transcript "OTTHUMT00000510381.1" ; level 2 ; orig_coord_info "chr4,124338863,124339047,-" ; tag basic TAGENE ; transcript_id "COPB2--AC133530.1^ENST00000669259.1" ; transcript_name "AC133530.1-201" ; transcript_type lncRNA
L1 and L2 created:
DCTN2--AC026120.1 HAVANA gene 19922 23457 . + . FI_gene_label "AC026120.1^ENSG00000278399.1" ; ID "DCTN2--AC026120.1^AC026120.1^ENSG00000278399.1" ; exon_id "ENSE00003739172.1" ; exon_number 1 ; gene_id "DCTN2--AC026120.1^AC026120.1^ENSG00000278399.1" ; gene_name "AC026120.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187900.1" ; havana_transcript "OTTHUMT00000475676.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr12,56985651,56985960,-" ; tag basic ; transcript_id "DCTN2--AC026120.1^ENST00000611536.1" ; transcript_name "AC026120.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
DCTN2--AC026120.1 HAVANA RNA 19922 23457 . + . FI_gene_label "AC026120.1^ENSG00000278399.1" ; ID "DCTN2--AC026120.1^ENST00000611536.1" ; Parent "DCTN2--AC026120.1^AC026120.1^ENSG00000278399.1" ; exon_id "ENSE00003739172.1" ; exon_number 1 ; gene_id "DCTN2--AC026120.1^AC026120.1^ENSG00000278399.1" ; gene_name "AC026120.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187900.1" ; havana_transcript "OTTHUMT00000475676.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr12,56985651,56985960,-" ; tag basic ; transcript_id "DCTN2--AC026120.1^ENST00000611536.1" ; transcript_name "AC026120.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
FGD4--AC023796.1 HAVANA gene 37866 47545 . + . FI_gene_label "AC023796.1^ENSG00000255745.2" ; ID "FGD4--AC023796.1^AC023796.1^ENSG00000255745.2" ; exon_id "ENSE00002314061.1" ; exon_number 1 ; gene_id "FGD4--AC023796.1^AC023796.1^ENSG00000255745.2" ; gene_name "AC023796.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169029.8" ; havana_transcript "OTTHUMT00000402020.1" ; level 2 ; orig_coord_info "chr12,24704565,24704756,+" ; transcript_id "FGD4--AC023796.1^ENST00000536131.1" ; transcript_name "AC023796.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
FGD4--AC023796.1 HAVANA RNA 37866 47545 . + . FI_gene_label "AC023796.1^ENSG00000255745.2" ; ID "FGD4--AC023796.1^ENST00000536131.1" ; Parent "FGD4--AC023796.1^AC023796.1^ENSG00000255745.2" ; exon_id "ENSE00002314061.1" ; exon_number 1 ; gene_id "FGD4--AC023796.1^AC023796.1^ENSG00000255745.2" ; gene_name "AC023796.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169029.8" ; havana_transcript "OTTHUMT00000402020.1" ; level 2 ; orig_coord_info "chr12,24704565,24704756,+" ; transcript_id "FGD4--AC023796.1^ENST00000536131.1" ; transcript_name "AC023796.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
FGD4--AC087312.1 HAVANA gene 37804 38283 . + . FI_gene_label "AC087312.1^ENSG00000244662.1" ; ID "FGD4--AC087312.1^AC087312.1^ENSG00000244662.1" ; exon_id "ENSE00001911111.1" ; exon_number 1 ; gene_id "FGD4--AC087312.1^AC087312.1^ENSG00000244662.1" ; gene_name "AC087312.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000157509.1" ; havana_transcript "OTTHUMT00000349008.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,24642687,24643166,+" ; tag pseudo_consens basic ; transcript_id "FGD4--AC087312.1^ENST00000471411.1" ; transcript_name "AC087312.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
FGD4--AC087312.1 HAVANA RNA 37804 38283 . + . FI_gene_label "AC087312.1^ENSG00000244662.1" ; ID "FGD4--AC087312.1^ENST00000471411.1" ; Parent "FGD4--AC087312.1^AC087312.1^ENSG00000244662.1" ; exon_id "ENSE00001911111.1" ; exon_number 1 ; gene_id "FGD4--AC087312.1^AC087312.1^ENSG00000244662.1" ; gene_name "AC087312.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000157509.1" ; havana_transcript "OTTHUMT00000349008.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr12,24642687,24643166,+" ; tag pseudo_consens basic ; transcript_id "FGD4--AC087312.1^ENST00000471411.1" ; transcript_name "AC087312.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
FOXJ3--AL512638.2 HAVANA gene 24380 25677 . + . FI_gene_label "AL512638.2^ENSG00000274468.1" ; ID "FOXJ3--AL512638.2^AL512638.2^ENSG00000274468.1" ; exon_id "ENSE00003738941.1" ; exon_number 1 ; gene_id "FOXJ3--AL512638.2^AL512638.2^ENSG00000274468.1" ; gene_name "AL512638.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187531.1" ; havana_transcript "OTTHUMT00000475228.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,115479428,115479478,+" ; tag basic ; transcript_id "FOXJ3--AL512638.2^ENST00000620370.1" ; transcript_name "AL512638.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
FOXJ3--AL512638.2 HAVANA RNA 24380 25677 . + . FI_gene_label "AL512638.2^ENSG00000274468.1" ; ID "FOXJ3--AL512638.2^ENST00000620370.1" ; Parent "FOXJ3--AL512638.2^AL512638.2^ENSG00000274468.1" ; exon_id "ENSE00003738941.1" ; exon_number 1 ; gene_id "FOXJ3--AL512638.2^AL512638.2^ENSG00000274468.1" ; gene_name "AL512638.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187531.1" ; havana_transcript "OTTHUMT00000475228.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr1,115479428,115479478,+" ; tag basic ; transcript_id "FOXJ3--AL512638.2^ENST00000620370.1" ; transcript_name "AL512638.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
FOXJ3--ELOCP20 HAVANA gene 24380 25029 . + . FI_gene_label "ELOCP20^ENSG00000229101.1" ; ID "FOXJ3--ELOCP20^ELOCP20^ENSG00000229101.1" ; exon_id "ENSE00001786802.1" ; exon_number 1 ; gene_id "FOXJ3--ELOCP20^ELOCP20^ENSG00000229101.1" ; gene_name ELOCP20 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000011972.1" ; havana_transcript "OTTHUMT00000033099.1" ; hgnc_id "HGNC:38156" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr1,115556826,115557049,+" ; tag pseudo_consens basic ; transcript_id "FOXJ3--ELOCP20^ENST00000422460.1" ; transcript_name "ELOCP20-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
FOXJ3--ELOCP20 HAVANA RNA 24380 25029 . + . FI_gene_label "ELOCP20^ENSG00000229101.1" ; ID "FOXJ3--ELOCP20^ENST00000422460.1" ; Parent "FOXJ3--ELOCP20^ELOCP20^ENSG00000229101.1" ; exon_id "ENSE00001786802.1" ; exon_number 1 ; gene_id "FOXJ3--ELOCP20^ELOCP20^ENSG00000229101.1" ; gene_name ELOCP20 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000011972.1" ; havana_transcript "OTTHUMT00000033099.1" ; hgnc_id "HGNC:38156" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr1,115556826,115557049,+" ; tag pseudo_consens basic ; transcript_id "FOXJ3--ELOCP20^ENST00000422460.1" ; transcript_name "ELOCP20-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
FRK--AL356967.1 HAVANA gene 23614 24044 . + . FI_gene_label "AL356967.1^ENSG00000218173.1" ; ID "FRK--AL356967.1^AL356967.1^ENSG00000218173.1" ; exon_id "ENSE00001546869.1" ; exon_number 1 ; gene_id "FRK--AL356967.1^AL356967.1^ENSG00000218173.1" ; gene_name "AL356967.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000015286.1" ; havana_transcript "OTTHUMT00000041641.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr6,104687241,104687671,+" ; tag basic ; transcript_id "FRK--AL356967.1^ENST00000406305.1" ; transcript_name "AL356967.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
FRK--AL356967.1 HAVANA RNA 23614 24044 . + . FI_gene_label "AL356967.1^ENSG00000218173.1" ; ID "FRK--AL356967.1^ENST00000406305.1" ; Parent "FRK--AL356967.1^AL356967.1^ENSG00000218173.1" ; exon_id "ENSE00001546869.1" ; exon_number 1 ; gene_id "FRK--AL356967.1^AL356967.1^ENSG00000218173.1" ; gene_name "AL356967.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000015286.1" ; havana_transcript "OTTHUMT00000041641.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr6,104687241,104687671,+" ; tag basic ; transcript_id "FRK--AL356967.1^ENST00000406305.1" ; transcript_name "AL356967.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
HEATR6--AC025048.6 HAVANA gene 28338 28775 . + . FI_gene_label "AC025048.6^ENSG00000280852.2" ; ID "HEATR6--AC025048.6^AC025048.6^ENSG00000280852.2" ; exon_id "ENSE00003772805.2" ; exon_number 1 ; gene_id "HEATR6--AC025048.6^AC025048.6^ENSG00000280852.2" ; gene_name "AC025048.6" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000191504.1" ; havana_transcript "OTTHUMT00000488147.1" ; level 2 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr17,60102225,60102662,-" ; tag basic ; transcript_id "HEATR6--AC025048.6^ENST00000627667.2" ; transcript_name "AC025048.6-202" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
HEATR6--AC025048.6 HAVANA RNA 28338 28775 . + . FI_gene_label "AC025048.6^ENSG00000280852.2" ; ID "HEATR6--AC025048.6^ENST00000627667.2" ; Parent "HEATR6--AC025048.6^AC025048.6^ENSG00000280852.2" ; exon_id "ENSE00003772805.2" ; exon_number 1 ; gene_id "HEATR6--AC025048.6^AC025048.6^ENSG00000280852.2" ; gene_name "AC025048.6" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000191504.1" ; havana_transcript "OTTHUMT00000488147.1" ; level 2 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr17,60102225,60102662,-" ; tag basic ; transcript_id "HEATR6--AC025048.6^ENST00000627667.2" ; transcript_name "AC025048.6-202" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
L1 and L2 created:
HEATR6--WFDC21P HAVANA gene 29340 32709 . + . FI_gene_label "WFDC21P^ENSG00000261040.7" ; ID "HEATR6--WFDC21P^WFDC21P^ENSG00000261040.7" ; exon_id "ENSE00002628921.1" ; exon_number 1 ; gene_id "HEATR6--WFDC21P^WFDC21P^ENSG00000261040.7" ; gene_name WFDC21P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000176074.3" ; havana_transcript "OTTHUMT00000431475.1" ; hgnc_id "HGNC:50357" ; level 2 ; orig_coord_info "chr17,60088197,60088293,-" ; tag basic ; transcript_id "HEATR6--WFDC21P^ENST00000566140.5" ; transcript_name "WFDC21P-201" ; transcript_support_level 1 ; transcript_type processed_transcript
HEATR6--WFDC21P HAVANA RNA 29340 32709 . + . FI_gene_label "WFDC21P^ENSG00000261040.7" ; ID "HEATR6--WFDC21P^ENST00000566140.5" ; Parent "HEATR6--WFDC21P^WFDC21P^ENSG00000261040.7" ; exon_id "ENSE00002628921.1" ; exon_number 1 ; gene_id "HEATR6--WFDC21P^WFDC21P^ENSG00000261040.7" ; gene_name WFDC21P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000176074.3" ; havana_transcript "OTTHUMT00000431475.1" ; hgnc_id "HGNC:50357" ; level 2 ; orig_coord_info "chr17,60088197,60088293,-" ; tag basic ; transcript_id "HEATR6--WFDC21P^ENST00000566140.5" ; transcript_name "WFDC21P-201" ; transcript_support_level 1 ; transcript_type processed_transcript
L1 and L2 created:
HIVEP3--ST3GAL3-AS1 HAVANA gene 32950 36418 . + . FI_gene_label "ST3GAL3-AS1^ENSG00000229444.1" ; ID "HIVEP3--ST3GAL3-AS1^ST3GAL3-AS1^ENSG00000229444.1" ; exon_id "ENSE00001683972.1" ; exon_number 1 ; gene_id "HIVEP3--ST3GAL3-AS1^ST3GAL3-AS1^ENSG00000229444.1" ; gene_name "ST3GAL3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000007703.1" ; havana_transcript "OTTHUMT00000020709.1" ; hgnc_id "HGNC:40529" ; level 2 ; orig_coord_info "chr1,43727233,43727343,-" ; tag basic ; transcript_id "HIVEP3--ST3GAL3-AS1^ENST00000437753.1" ; transcript_name "ST3GAL3-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
HIVEP3--ST3GAL3-AS1 HAVANA RNA 32950 36418 . + . FI_gene_label "ST3GAL3-AS1^ENSG00000229444.1" ; ID "HIVEP3--ST3GAL3-AS1^ENST00000437753.1" ; Parent "HIVEP3--ST3GAL3-AS1^ST3GAL3-AS1^ENSG00000229444.1" ; exon_id "ENSE00001683972.1" ; exon_number 1 ; gene_id "HIVEP3--ST3GAL3-AS1^ST3GAL3-AS1^ENSG00000229444.1" ; gene_name "ST3GAL3-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000007703.1" ; havana_transcript "OTTHUMT00000020709.1" ; hgnc_id "HGNC:40529" ; level 2 ; orig_coord_info "chr1,43727233,43727343,-" ; tag basic ; transcript_id "HIVEP3--ST3GAL3-AS1^ENST00000437753.1" ; transcript_name "ST3GAL3-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
HTT--LINC01899 HAVANA gene 83752 86069 . + . FI_gene_label "LINC01899^ENSG00000265352.1" ; ID "HTT--LINC01899^LINC01899^ENSG00000265352.1" ; exon_id "ENSE00002731046.1" ; exon_number 1 ; gene_id "HTT--LINC01899^LINC01899^ENSG00000265352.1" ; gene_name LINC01899 ; gene_type lncRNA ; havana_gene "OTTHUMG00000178794.1" ; havana_transcript "OTTHUMT00000443352.1" ; hgnc_id "HGNC:52718" ; level 2 ; orig_coord_info "chr18,71788112,71788128,-" ; tag basic ; transcript_id "HTT--LINC01899^ENST00000580323.1" ; transcript_name "LINC01899-201" ; transcript_support_level 5 ; transcript_type lncRNA
HTT--LINC01899 HAVANA RNA 83752 86069 . + . FI_gene_label "LINC01899^ENSG00000265352.1" ; ID "HTT--LINC01899^ENST00000580323.1" ; Parent "HTT--LINC01899^LINC01899^ENSG00000265352.1" ; exon_id "ENSE00002731046.1" ; exon_number 1 ; gene_id "HTT--LINC01899^LINC01899^ENSG00000265352.1" ; gene_name LINC01899 ; gene_type lncRNA ; havana_gene "OTTHUMG00000178794.1" ; havana_transcript "OTTHUMT00000443352.1" ; hgnc_id "HGNC:52718" ; level 2 ; orig_coord_info "chr18,71788112,71788128,-" ; tag basic ; transcript_id "HTT--LINC01899^ENST00000580323.1" ; transcript_name "LINC01899-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
KIAA1217--LINC02664 HAVANA gene 39956 45391 . + . FI_gene_label "LINC02664^ENSG00000272381.2" ; ID "KIAA1217--LINC02664^LINC02664^ENSG00000272381.2" ; exon_id "ENSE00003696097.1" ; exon_number 1 ; gene_id "KIAA1217--LINC02664^LINC02664^ENSG00000272381.2" ; gene_name LINC02664 ; gene_type lncRNA ; havana_gene "OTTHUMG00000185608.3" ; havana_transcript "OTTHUMT00000470835.1" ; hgnc_id "HGNC:54150" ; level 2 ; orig_coord_info "chr10,31187883,31188199,+" ; tag basic ; transcript_id "KIAA1217--LINC02664^ENST00000605929.1" ; transcript_name "LINC02664-201" ; transcript_support_level 2 ; transcript_type lncRNA
KIAA1217--LINC02664 HAVANA RNA 39956 45391 . + . FI_gene_label "LINC02664^ENSG00000272381.2" ; ID "KIAA1217--LINC02664^ENST00000605929.1" ; Parent "KIAA1217--LINC02664^LINC02664^ENSG00000272381.2" ; exon_id "ENSE00003696097.1" ; exon_number 1 ; gene_id "KIAA1217--LINC02664^LINC02664^ENSG00000272381.2" ; gene_name LINC02664 ; gene_type lncRNA ; havana_gene "OTTHUMG00000185608.3" ; havana_transcript "OTTHUMT00000470835.1" ; hgnc_id "HGNC:54150" ; level 2 ; orig_coord_info "chr10,31187883,31188199,+" ; tag basic ; transcript_id "KIAA1217--LINC02664^ENST00000605929.1" ; transcript_name "LINC02664-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
KIAA1217--ZEB1-AS1 HAVANA gene 40354 41783 . + . FI_gene_label "ZEB1-AS1^ENSG00000237036.5" ; ID "KIAA1217--ZEB1-AS1^ZEB1-AS1^ENSG00000237036.5" ; exon_id "ENSE00001742812.1" ; exon_number 1 ; gene_id "KIAA1217--ZEB1-AS1^ZEB1-AS1^ENSG00000237036.5" ; gene_name "ZEB1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000017905.5" ; havana_transcript "OTTHUMT00000470840.1" ; hgnc_id "HGNC:42354" ; level 2 ; orig_coord_info "chr10,31319515,31319881,-" ; transcript_id "KIAA1217--ZEB1-AS1^ENST00000423714.1" ; transcript_name "ZEB1-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
KIAA1217--ZEB1-AS1 HAVANA RNA 40354 41783 . + . FI_gene_label "ZEB1-AS1^ENSG00000237036.5" ; ID "KIAA1217--ZEB1-AS1^ENST00000423714.1" ; Parent "KIAA1217--ZEB1-AS1^ZEB1-AS1^ENSG00000237036.5" ; exon_id "ENSE00001742812.1" ; exon_number 1 ; gene_id "KIAA1217--ZEB1-AS1^ZEB1-AS1^ENSG00000237036.5" ; gene_name "ZEB1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000017905.5" ; havana_transcript "OTTHUMT00000470840.1" ; hgnc_id "HGNC:42354" ; level 2 ; orig_coord_info "chr10,31319515,31319881,-" ; transcript_id "KIAA1217--ZEB1-AS1^ENST00000423714.1" ; transcript_name "ZEB1-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
LSM1--AC090453.1 HAVANA gene 9629 10064 . + . FI_gene_label "AC090453.1^ENSG00000243503.2" ; ID "LSM1--AC090453.1^AC090453.1^ENSG00000243503.2" ; exon_id "ENSE00001896700.2" ; exon_number 1 ; gene_id "LSM1--AC090453.1^AC090453.1^ENSG00000243503.2" ; gene_name "AC090453.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000158604.2" ; havana_transcript "OTTHUMT00000351453.2" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,36987977,36988412,-" ; tag pseudo_consens basic ; transcript_id "LSM1--AC090453.1^ENST00000495560.2" ; transcript_name "AC090453.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
LSM1--AC090453.1 HAVANA RNA 9629 10064 . + . FI_gene_label "AC090453.1^ENSG00000243503.2" ; ID "LSM1--AC090453.1^ENST00000495560.2" ; Parent "LSM1--AC090453.1^AC090453.1^ENSG00000243503.2" ; exon_id "ENSE00001896700.2" ; exon_number 1 ; gene_id "LSM1--AC090453.1^AC090453.1^ENSG00000243503.2" ; gene_name "AC090453.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000158604.2" ; havana_transcript "OTTHUMT00000351453.2" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr8,36987977,36988412,-" ; tag pseudo_consens basic ; transcript_id "LSM1--AC090453.1^ENST00000495560.2" ; transcript_name "AC090453.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
PDSS2--AL023693.1 HAVANA gene 16922 17859 . + . FI_gene_label "AL023693.1^ENSG00000224374.1" ; ID "PDSS2--AL023693.1^AL023693.1^ENSG00000224374.1" ; exon_id "ENSE00001757526.1" ; exon_number 1 ; gene_id "PDSS2--AL023693.1^AL023693.1^ENSG00000224374.1" ; gene_name "AL023693.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000015628.1" ; havana_transcript "OTTHUMT00000042346.1" ; level 2 ; orig_coord_info "chr6,135259996,135260093,+" ; tag basic ; transcript_id "PDSS2--AL023693.1^ENST00000434255.1" ; transcript_name "AL023693.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
PDSS2--AL023693.1 HAVANA RNA 16922 17859 . + . FI_gene_label "AL023693.1^ENSG00000224374.1" ; ID "PDSS2--AL023693.1^ENST00000434255.1" ; Parent "PDSS2--AL023693.1^AL023693.1^ENSG00000224374.1" ; exon_id "ENSE00001757526.1" ; exon_number 1 ; gene_id "PDSS2--AL023693.1^AL023693.1^ENSG00000224374.1" ; gene_name "AL023693.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000015628.1" ; havana_transcript "OTTHUMT00000042346.1" ; level 2 ; orig_coord_info "chr6,135259996,135260093,+" ; tag basic ; transcript_id "PDSS2--AL023693.1^ENST00000434255.1" ; transcript_name "AL023693.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
PDSS2--MIR548A2 ENSEMBL gene 16922 17018 . + . FI_gene_label "MIR548A2^ENSG00000207689.1" ; ID "PDSS2--MIR548A2^MIR548A2^ENSG00000207689.1" ; exon_id "ENSE00001499963.1" ; exon_number 1 ; gene_id "PDSS2--MIR548A2^MIR548A2^ENSG00000207689.1" ; gene_name MIR548A2 ; gene_type miRNA ; hgnc_id "HGNC:32797" ; level 3 ; orig_coord_info "chr6,135239160,135239256,+" ; tag basic ; transcript_id "PDSS2--MIR548A2^ENST00000384956.1" ; transcript_name "MIR548A2-201" ; transcript_support_level NA ; transcript_type miRNA
PDSS2--MIR548A2 ENSEMBL RNA 16922 17018 . + . FI_gene_label "MIR548A2^ENSG00000207689.1" ; ID "PDSS2--MIR548A2^ENST00000384956.1" ; Parent "PDSS2--MIR548A2^MIR548A2^ENSG00000207689.1" ; exon_id "ENSE00001499963.1" ; exon_number 1 ; gene_id "PDSS2--MIR548A2^MIR548A2^ENSG00000207689.1" ; gene_name MIR548A2 ; gene_type miRNA ; hgnc_id "HGNC:32797" ; level 3 ; orig_coord_info "chr6,135239160,135239256,+" ; tag basic ; transcript_id "PDSS2--MIR548A2^ENST00000384956.1" ; transcript_name "MIR548A2-201" ; transcript_support_level NA ; transcript_type miRNA
L1 and L2 created:
PTPRK--DEFA9P HAVANA gene 53093 53965 . + . FI_gene_label "DEFA9P^ENSG00000233238.1" ; ID "PTPRK--DEFA9P^DEFA9P^ENSG00000233238.1" ; exon_id "ENSE00001627016.1" ; exon_number 1 ; gene_id "PTPRK--DEFA9P^DEFA9P^ENSG00000233238.1" ; gene_name DEFA9P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000150021.1" ; havana_transcript "OTTHUMT00000315814.1" ; hgnc_id "HGNC:31800" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr8,6959990,6960161,-" ; tag basic ; transcript_id "PTPRK--DEFA9P^ENST00000433042.1" ; transcript_name "DEFA9P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
PTPRK--DEFA9P HAVANA RNA 53093 53965 . + . FI_gene_label "DEFA9P^ENSG00000233238.1" ; ID "PTPRK--DEFA9P^ENST00000433042.1" ; Parent "PTPRK--DEFA9P^DEFA9P^ENSG00000233238.1" ; exon_id "ENSE00001627016.1" ; exon_number 1 ; gene_id "PTPRK--DEFA9P^DEFA9P^ENSG00000233238.1" ; gene_name DEFA9P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000150021.1" ; havana_transcript "OTTHUMT00000315814.1" ; hgnc_id "HGNC:31800" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr8,6959990,6960161,-" ; tag basic ; transcript_id "PTPRK--DEFA9P^ENST00000433042.1" ; transcript_name "DEFA9P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
SMOC2--AP000146.1 HAVANA gene 24537 27035 . + . FI_gene_label "AP000146.1^ENSG00000230379.5" ; ID "SMOC2--AP000146.1^AP000146.1^ENSG00000230379.5" ; exon_id "ENSE00001660760.1" ; exon_number 1 ; gene_id "SMOC2--AP000146.1^AP000146.1^ENSG00000230379.5" ; gene_name "AP000146.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000078324.1" ; havana_transcript "OTTHUMT00000171134.1" ; level 2 ; orig_coord_info "chr21,24951911,24952157,-" ; tag basic ; transcript_id "SMOC2--AP000146.1^ENST00000441666.5" ; transcript_name "AP000146.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
SMOC2--AP000146.1 HAVANA RNA 24537 27035 . + . FI_gene_label "AP000146.1^ENSG00000230379.5" ; ID "SMOC2--AP000146.1^ENST00000441666.5" ; Parent "SMOC2--AP000146.1^AP000146.1^ENSG00000230379.5" ; exon_id "ENSE00001660760.1" ; exon_number 1 ; gene_id "SMOC2--AP000146.1^AP000146.1^ENSG00000230379.5" ; gene_name "AP000146.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000078324.1" ; havana_transcript "OTTHUMT00000171134.1" ; level 2 ; orig_coord_info "chr21,24951911,24952157,-" ; tag basic ; transcript_id "SMOC2--AP000146.1^ENST00000441666.5" ; transcript_name "AP000146.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
SRPK2--LINC01449 HAVANA gene 33213 40380 . + . FI_gene_label "LINC01449^ENSG00000224017.2" ; ID "SRPK2--LINC01449^LINC01449^ENSG00000224017.2" ; exon_id "ENSE00001621638.1" ; exon_number 1 ; gene_id "SRPK2--LINC01449^LINC01449^ENSG00000224017.2" ; gene_name LINC01449 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155115.4" ; havana_transcript "OTTHUMT00000338454.1" ; hgnc_id "HGNC:50791" ; level 2 ; orig_coord_info "chr7,41101604,41101859,+" ; tag basic ; transcript_id "SRPK2--LINC01449^ENST00000440213.1" ; transcript_name "LINC01449-201" ; transcript_support_level 1 ; transcript_type lncRNA
SRPK2--LINC01449 HAVANA RNA 33213 40380 . + . FI_gene_label "LINC01449^ENSG00000224017.2" ; ID "SRPK2--LINC01449^ENST00000440213.1" ; Parent "SRPK2--LINC01449^LINC01449^ENSG00000224017.2" ; exon_id "ENSE00001621638.1" ; exon_number 1 ; gene_id "SRPK2--LINC01449^LINC01449^ENSG00000224017.2" ; gene_name LINC01449 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155115.4" ; havana_transcript "OTTHUMT00000338454.1" ; hgnc_id "HGNC:50791" ; level 2 ; orig_coord_info "chr7,41101604,41101859,+" ; tag basic ; transcript_id "SRPK2--LINC01449^ENST00000440213.1" ; transcript_name "LINC01449-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
SRPK2--LINC01450 HAVANA gene 30913 35996 . + . FI_gene_label "LINC01450^ENSG00000232458.1" ; ID "SRPK2--LINC01450^LINC01450^ENSG00000232458.1" ; exon_id "ENSE00001693787.1" ; exon_number 1 ; gene_id "SRPK2--LINC01450^LINC01450^ENSG00000232458.1" ; gene_name LINC01450 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155113.2" ; havana_transcript "OTTHUMT00000338450.1" ; hgnc_id "HGNC:50792" ; level 2 ; orig_coord_info "chr7,40979374,40979939,-" ; tag basic ; transcript_id "SRPK2--LINC01450^ENST00000443406.1" ; transcript_name "LINC01450-201" ; transcript_support_level 1 ; transcript_type lncRNA
SRPK2--LINC01450 HAVANA RNA 30913 35996 . + . FI_gene_label "LINC01450^ENSG00000232458.1" ; ID "SRPK2--LINC01450^ENST00000443406.1" ; Parent "SRPK2--LINC01450^LINC01450^ENSG00000232458.1" ; exon_id "ENSE00001693787.1" ; exon_number 1 ; gene_id "SRPK2--LINC01450^LINC01450^ENSG00000232458.1" ; gene_name LINC01450 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155113.2" ; havana_transcript "OTTHUMT00000338450.1" ; hgnc_id "HGNC:50792" ; level 2 ; orig_coord_info "chr7,40979374,40979939,-" ; tag basic ; transcript_id "SRPK2--LINC01450^ENST00000443406.1" ; transcript_name "LINC01450-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
WAC--AC025822.2 HAVANA gene 27991 32589 . + . FI_gene_label "AC025822.2^ENSG00000236990.1" ; ID "WAC--AC025822.2^AC025822.2^ENSG00000236990.1" ; exon_id "ENSE00001647260.1" ; exon_number 1 ; gene_id "WAC--AC025822.2^AC025822.2^ENSG00000236990.1" ; gene_name "AC025822.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000017571.1" ; havana_transcript "OTTHUMT00000046505.1" ; level 2 ; orig_coord_info "chr10,4051726,4052157,+" ; tag basic ; transcript_id "WAC--AC025822.2^ENST00000455199.1" ; transcript_name "AC025822.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
WAC--AC025822.2 HAVANA RNA 27991 32589 . + . FI_gene_label "AC025822.2^ENSG00000236990.1" ; ID "WAC--AC025822.2^ENST00000455199.1" ; Parent "WAC--AC025822.2^AC025822.2^ENSG00000236990.1" ; exon_id "ENSE00001647260.1" ; exon_number 1 ; gene_id "WAC--AC025822.2^AC025822.2^ENSG00000236990.1" ; gene_name "AC025822.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000017571.1" ; havana_transcript "OTTHUMT00000046505.1" ; level 2 ; orig_coord_info "chr10,4051726,4052157,+" ; tag basic ; transcript_id "WAC--AC025822.2^ENST00000455199.1" ; transcript_name "AC025822.2-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
WIPI2--LINC01449 HAVANA gene 25652 32819 . + . FI_gene_label "LINC01449^ENSG00000224017.2" ; ID "WIPI2--LINC01449^LINC01449^ENSG00000224017.2" ; exon_id "ENSE00001621638.1" ; exon_number 1 ; gene_id "WIPI2--LINC01449^LINC01449^ENSG00000224017.2" ; gene_name LINC01449 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155115.4" ; havana_transcript "OTTHUMT00000338454.1" ; hgnc_id "HGNC:50791" ; level 2 ; orig_coord_info "chr7,41101604,41101859,+" ; tag basic ; transcript_id "WIPI2--LINC01449^ENST00000440213.1" ; transcript_name "LINC01449-201" ; transcript_support_level 1 ; transcript_type lncRNA
WIPI2--LINC01449 HAVANA RNA 25652 32819 . + . FI_gene_label "LINC01449^ENSG00000224017.2" ; ID "WIPI2--LINC01449^ENST00000440213.1" ; Parent "WIPI2--LINC01449^LINC01449^ENSG00000224017.2" ; exon_id "ENSE00001621638.1" ; exon_number 1 ; gene_id "WIPI2--LINC01449^LINC01449^ENSG00000224017.2" ; gene_name LINC01449 ; gene_type lncRNA ; havana_gene "OTTHUMG00000155115.4" ; havana_transcript "OTTHUMT00000338454.1" ; hgnc_id "HGNC:50791" ; level 2 ; orig_coord_info "chr7,41101604,41101859,+" ; tag basic ; transcript_id "WIPI2--LINC01449^ENST00000440213.1" ; transcript_name "LINC01449-201" ; transcript_support_level 1 ; transcript_type lncRNA
1658 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 1 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
3654 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 120 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed