Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/dc3aec2566cd6ee505f0009abe4574/aih-tih-sc-06a169-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/6741be33027fe73bccd860396732a1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/6741be33027fe73bccd860396732a1/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 272135879
unpaired = 4095397
MERGED PAIRED END READS = 272135879
MATES PROCESSED = 548367155
TOTAL READS     = 276231276
DISTINCT READS  = 6.79878e+07
DISTINCT COUNTS = 796
MAX COUNT       = 868014
COUNTS OF 1     = 1.83064e+07
MAX TERMS       = 100
OBSERVED COUNTS (868015)
1	18306443
2	12327668
3	9543960
4	7266995
5	5402201
6	3942313
7	2849420
8	2048584
9	1477302
10	1072809
11	787422
12	586108
13	443131
14	340132
15	263623
16	208806
17	166583
18	135823
19	110932
20	91295
21	76560
22	63835
23	54294
24	46231
25	39216
26	33686
27	29166
28	24912
29	21855
30	18885
31	16725
32	14931
33	13101
34	11715
35	10527
36	9333
37	8475
38	7554
39	7031
40	6361
41	5808
42	5302
43	4932
44	4573
45	4143
46	3872
47	3618
48	3404
49	3182
50	2949
51	2685
52	2466
53	2348
54	2204
55	2113
56	2002
57	1793
58	1770
59	1607
60	1494
61	1421
62	1368
63	1356
64	1312
65	1172
66	1096
67	1086
68	1036
69	1009
70	902
71	897
72	818
73	798
74	773
75	720
76	677
77	663
78	661
79	632
80	606
81	579
82	536
83	568
84	514
85	491
86	489
87	435
88	400
89	414
90	391
91	395
92	389
93	352
94	346
95	330
96	302
97	338
98	331
99	298
100	284
101	299
102	263
103	235
104	230
105	202
106	238
107	232
108	233
109	222
110	188
111	217
112	195
113	193
114	192
115	177
116	165
117	165
118	146
119	165
120	151
121	159
122	129
123	126
124	150
125	142
126	128
127	130
128	127
129	117
130	121
131	114
132	102
133	101
134	124
135	104
136	116
137	98
138	98
139	104
140	94
141	105
142	91
143	86
144	93
145	82
146	74
147	78
148	89
149	83
150	84
151	55
152	88
153	76
154	50
155	65
156	70
157	57
158	64
159	64
160	57
161	64
162	66
163	63
164	49
165	53
166	61
167	54
168	42
169	54
170	52
171	56
172	43
173	40
174	39
175	47
176	41
177	42
178	43
179	42
180	54
181	42
182	48
183	39
184	33
185	36
186	38
187	34
188	58
189	34
190	24
191	26
192	32
193	36
194	31
195	24
196	25
197	32
198	21
199	41
200	26
201	30
202	29
203	39
204	21
205	28
206	28
207	22
208	21
209	28
210	26
211	20
212	23
213	25
214	18
215	13
216	24
217	24
218	17
219	22
220	32
221	17
222	35
223	19
224	16
225	25
226	17
227	26
228	14
229	19
230	28
231	14
232	10
233	17
234	7
235	17
236	22
237	23
238	13
239	20
240	20
241	18
242	10
243	22
244	20
245	20
246	14
247	14
248	13
249	11
250	15
251	12
252	15
253	18
254	12
255	21
256	11
257	13
258	8
259	9
260	13
261	20
262	9
263	12
264	10
265	14
266	12
267	10
268	16
269	15
270	13
271	17
272	12
273	5
274	11
275	10
276	11
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279	15
280	7
281	10
282	9
283	13
284	16
285	11
286	13
287	4
288	7
289	5
290	8
291	6
292	10
293	10
294	12
295	8
296	9
297	8
298	13
299	10
300	12
301	11
302	5
303	9
304	5
305	10
306	12
307	9
308	6
309	4
310	4
311	10
312	5
313	5
314	6
315	6
316	8
317	5
318	7
319	11
320	8
321	6
322	4
323	9
324	3
325	7
326	5
327	5
328	5
329	5
330	3
331	6
332	7
333	5
334	5
335	6
336	8
337	3
338	7
339	5
340	5
341	8
342	6
343	9
344	3
345	4
346	1
347	3
348	7
350	6
351	3
352	3
353	3
354	7
355	5
357	1
358	6
359	1
360	3
361	10
362	6
363	3
364	5
365	2
366	10
367	3
368	2
369	10
370	3
371	6
372	7
373	5
374	2
375	2
376	8
377	7
378	3
379	4
380	6
381	3
382	4
383	2
384	5
385	3
386	3
387	8
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389	1
390	1
391	2
392	4
393	9
394	1
395	1
396	2
397	2
398	2
399	4
400	5
401	4
402	2
403	9
404	3
405	3
406	2
407	6
408	4
409	3
410	2
411	4
412	4
413	3
414	8
415	2
416	2
417	4
419	3
420	1
421	3
423	1
425	2
426	5
427	5
428	3
429	4
431	3
432	2
433	4
434	2
435	1
436	2
437	3
438	1
439	3
440	2
441	2
442	1
443	2
444	2
445	1
446	2
447	3
448	2
450	3
451	1
452	3
454	2
455	2
456	1
458	2
459	3
461	1
462	2
463	1
464	2
465	1
467	4
468	2
469	4
474	2
475	1
476	1
477	2
478	2
481	4
483	5
484	2
489	2
491	3
492	2
494	2
495	2
496	1
497	1
498	2
499	2
500	1
501	4
502	1
505	2
506	1
507	2
508	1
509	2
510	2
511	1
512	3
513	1
514	1
515	3
516	1
517	2
518	1
519	3
520	3
521	2
523	2
524	2
525	2
526	1
528	2
529	1
531	3
532	1
534	1
536	1
538	1
539	1
540	2
542	2
543	1
544	3
546	2
547	1
548	2
549	1
550	2
553	2
556	1
558	1
559	2
561	5
562	1
564	2
565	1
566	1
567	1
568	1
571	3
572	1
573	1
574	2
575	1
576	1
577	2
579	2
580	5
581	1
584	2
585	2
587	1
589	1
590	1
591	1
592	1
593	1
595	2
596	1
597	1
598	2
599	2
601	1
605	1
607	1
608	1
609	2
610	1
611	1
612	1
615	1
616	1
617	1
618	1
620	1
621	2
623	1
624	1
631	2
633	1
634	1
635	1
637	1
638	1
639	1
640	1
641	1
646	3
649	1
650	1
652	1
653	1
657	1
659	1
662	1
663	2
667	1
673	2
675	1
677	2
678	2
679	2
680	2
685	1
686	1
687	1
688	1
690	1
691	1
694	2
696	1
698	1
700	1
702	2
703	1
706	2
708	2
711	1
713	1
715	1
716	1
717	1
718	1
720	1
722	1
723	1
726	2
729	1
730	1
732	1
733	1
736	1
737	1
738	1
739	2
742	3
744	1
748	2
749	2
754	2
755	1
758	1
763	1
767	1
768	1
770	1
771	2
772	1
773	1
780	1
782	1
783	1
787	1
791	2
793	2
794	1
802	1
804	1
806	1
807	1
808	1
809	1
810	1
814	2
816	1
819	1
821	2
827	1
829	1
835	1
838	1
839	1
844	1
851	1
852	1
856	2
857	1
865	1
870	1
873	1
880	1
881	1
887	1
893	1
894	1
895	2
910	1
913	1
929	2
934	1
942	1
944	1
946	1
948	1
965	1
966	1
972	1
973	1
974	1
979	1
995	1
998	1
1000	1
1009	1
1011	1
1013	1
1016	1
1022	1
1025	2
1032	1
1034	1
1045	1
1052	1
1054	1
1055	1
1059	1
1061	1
1062	2
1066	1
1067	1
1068	1
1069	1
1081	1
1084	1
1086	1
1099	1
1105	1
1110	1
1114	1
1121	1
1122	1
1131	1
1135	1
1145	1
1148	1
1151	1
1157	1
1165	1
1176	1
1182	1
1185	1
1198	1
1208	1
1213	1
1222	1
1226	1
1243	1
1255	1
1267	1
1273	1
1289	1
1294	1
1314	1
1316	1
1318	1
1320	1
1321	1
1327	1
1329	2
1339	1
1344	3
1348	1
1351	1
1370	1
1375	1
1378	1
1391	1
1404	1
1406	2
1409	1
1429	1
1443	1
1454	1
1469	1
1475	1
1516	1
1573	1
1585	1
1614	1
1680	1
1713	1
1721	1
1722	1
1751	1
1788	1
1804	1
1819	1
1856	1
1905	1
1973	1
1975	1
2005	1
2092	1
2131	1
2135	1
2189	1
2345	1
2478	1
2479	1
2565	1
2719	1
3275	1
3515	1
4194	1
10293	1
10823	1
34605	1
868014	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
.._..._..........._.............._........................._........_...
.___.............._.._.................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]