Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/fd69757eb355a018c4d4e76de80dcb/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/a031f794fd70b39e21d0ce5843009c/fi_workdir/aih-tih-sc-87d1a3-R1_A23WJ53LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/aa/fd69757eb355a018c4d4e76de80dcb/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 26024
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 26024
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:26024
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 5 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACOT8--RBL1 HAVANA gene 1014 9683 . + . FI_gene_label "ACOT8^ENSG00000101473.17" ; ID "ACOT8--RBL1^ACOT8^ENSG00000101473.17" ; ccdsid "CCDS13378.1" ; exon_id "ENSE00001905512.2" ; exon_number 1 ; gene_id "ACOT8--RBL1^ACOT8^ENSG00000101473.17" ; gene_name ACOT8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033045.9" ; havana_transcript "OTTHUMT00000080338.3" ; hgnc_id "HGNC:15919" ; level 2 ; orig_coord_info "chr20,45857188,45857315,-" ; protein_id "ENSP00000217455.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACOT8--RBL1^ENST00000217455.9" ; transcript_name "ACOT8-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACOT8--RBL1 HAVANA mRNA 1014 9683 . + . FI_gene_label "ACOT8^ENSG00000101473.17" ; ID "ACOT8--RBL1^ENST00000217455.9" ; Parent "ACOT8--RBL1^ACOT8^ENSG00000101473.17" ; ccdsid "CCDS13378.1" ; exon_id "ENSE00001905512.2" ; exon_number 1 ; gene_id "ACOT8--RBL1^ACOT8^ENSG00000101473.17" ; gene_name ACOT8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033045.9" ; havana_transcript "OTTHUMT00000080338.3" ; hgnc_id "HGNC:15919" ; level 2 ; orig_coord_info "chr20,45857188,45857315,-" ; protein_id "ENSP00000217455.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACOT8--RBL1^ENST00000217455.9" ; transcript_name "ACOT8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACOT8--RBL1 HAVANA gene 12692 34268 . + . FI_gene_label "RBL1^ENSG00000080839.12" ; ID "ACOT8--RBL1^RBL1^ENSG00000080839.12" ; ccdsid "CCDS13290.1" ; exon_id "ENSE00001869508.1" ; exon_number 1 ; gene_id "ACOT8--RBL1^RBL1^ENSG00000080839.12" ; gene_name RBL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032406.5" ; havana_transcript "OTTHUMT00000079068.1" ; hgnc_id "HGNC:9893" ; level 2 ; orig_coord_info "chr20,37095773,37095928,-" ; protein_id "ENSP00000343646.3" ; tag basic CCDS ; transcript_id "ACOT8--RBL1^ENST00000344359.7" ; transcript_name "RBL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACOT8--RBL1 HAVANA mRNA 12692 34268 . + . FI_gene_label "RBL1^ENSG00000080839.12" ; ID "ACOT8--RBL1^ENST00000344359.7" ; Parent "ACOT8--RBL1^RBL1^ENSG00000080839.12" ; ccdsid "CCDS13290.1" ; exon_id "ENSE00001869508.1" ; exon_number 1 ; gene_id "ACOT8--RBL1^RBL1^ENSG00000080839.12" ; gene_name RBL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032406.5" ; havana_transcript "OTTHUMT00000079068.1" ; hgnc_id "HGNC:9893" ; level 2 ; orig_coord_info "chr20,37095773,37095928,-" ; protein_id "ENSP00000343646.3" ; tag basic CCDS ; transcript_id "ACOT8--RBL1^ENST00000344359.7" ; transcript_name "RBL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGK--VPS13B HAVANA gene 32838 51064 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "AGK--VPS13B^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "AGK--VPS13B^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "AGK--VPS13B^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
AGK--VPS13B HAVANA mRNA 32838 51064 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "AGK--VPS13B^ENST00000355155.5" ; Parent "AGK--VPS13B^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "AGK--VPS13B^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "AGK--VPS13B^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGK--VPS13B HAVANA gene 1118 27740 . + . FI_gene_label "AGK^ENSG00000006530.18" ; ID "AGK--VPS13B^AGK^ENSG00000006530.18" ; exon_id "ENSE00003471481.1" ; exon_number 2 ; gene_id "AGK--VPS13B^AGK^ENSG00000006530.18" ; gene_name AGK ; gene_type protein_coding ; havana_gene "OTTHUMG00000157499.2" ; havana_transcript "OTTHUMT00000348970.1" ; hgnc_id "HGNC:21869" ; level 2 ; orig_coord_info "chr7,141555555,141555567,+" ; protein_id "ENSP00000420776.1" ; tag dotter_confirmed basic ; transcript_id "AGK--VPS13B^ENST00000473247.5" ; transcript_name "AGK-202" ; transcript_support_level 5 ; transcript_type protein_coding
AGK--VPS13B HAVANA mRNA 1118 27740 . + . FI_gene_label "AGK^ENSG00000006530.18" ; ID "AGK--VPS13B^ENST00000473247.5" ; Parent "AGK--VPS13B^AGK^ENSG00000006530.18" ; exon_id "ENSE00003471481.1" ; exon_number 2 ; gene_id "AGK--VPS13B^AGK^ENSG00000006530.18" ; gene_name AGK ; gene_type protein_coding ; havana_gene "OTTHUMG00000157499.2" ; havana_transcript "OTTHUMT00000348970.1" ; hgnc_id "HGNC:21869" ; level 2 ; orig_coord_info "chr7,141555555,141555567,+" ; protein_id "ENSP00000420776.1" ; tag dotter_confirmed basic ; transcript_id "AGK--VPS13B^ENST00000473247.5" ; transcript_name "AGK-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AHCYL1--AL359258.1 HAVANA gene 2780 15517 . + . FI_gene_label "AHCYL1^ENSG00000168710.18" ; ID "AHCYL1--AL359258.1^AHCYL1^ENSG00000168710.18" ; ccdsid "CCDS55620.1" ; exon_id "ENSE00003657518.1" ; exon_number 2 ; gene_id "AHCYL1--AL359258.1^AHCYL1^ENSG00000168710.18" ; gene_name AHCYL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011652.4" ; havana_transcript "OTTHUMT00000032244.2" ; hgnc_id "HGNC:344" ; level 2 ; orig_coord_info "chr1,110009055,110009145,+" ; protein_id "ENSP00000352092.3" ; tag basic appris_principal_1 CCDS ; transcript_id "AHCYL1--AL359258.1^ENST00000359172.3" ; transcript_name "AHCYL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AHCYL1--AL359258.1 HAVANA mRNA 2780 15517 . + . FI_gene_label "AHCYL1^ENSG00000168710.18" ; ID "AHCYL1--AL359258.1^ENST00000359172.3" ; Parent "AHCYL1--AL359258.1^AHCYL1^ENSG00000168710.18" ; ccdsid "CCDS55620.1" ; exon_id "ENSE00003657518.1" ; exon_number 2 ; gene_id "AHCYL1--AL359258.1^AHCYL1^ENSG00000168710.18" ; gene_name AHCYL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011652.4" ; havana_transcript "OTTHUMT00000032244.2" ; hgnc_id "HGNC:344" ; level 2 ; orig_coord_info "chr1,110009055,110009145,+" ; protein_id "ENSP00000352092.3" ; tag basic appris_principal_1 CCDS ; transcript_id "AHCYL1--AL359258.1^ENST00000359172.3" ; transcript_name "AHCYL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF2--RNA5SP486 HAVANA gene 1001 43857 . + . FI_gene_label "ARFGEF2^ENSG00000124198.10" ; ID "ARFGEF2--RNA5SP486^ARFGEF2^ENSG00000124198.10" ; ccdsid "CCDS13411.1" ; exon_id "ENSE00001456459.4" ; exon_number 1 ; gene_id "ARFGEF2--RNA5SP486^ARFGEF2^ENSG00000124198.10" ; gene_name ARFGEF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032687.2" ; havana_transcript "OTTHUMT00000079627.2" ; hgnc_id "HGNC:15853" ; level 2 ; orig_coord_info "chr20,48921890,48922010,+" ; protein_id "ENSP00000360985.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARFGEF2--RNA5SP486^ENST00000371917.5" ; transcript_name "ARFGEF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF2--RNA5SP486 HAVANA mRNA 1001 43857 . + . FI_gene_label "ARFGEF2^ENSG00000124198.10" ; ID "ARFGEF2--RNA5SP486^ENST00000371917.5" ; Parent "ARFGEF2--RNA5SP486^ARFGEF2^ENSG00000124198.10" ; ccdsid "CCDS13411.1" ; exon_id "ENSE00001456459.4" ; exon_number 1 ; gene_id "ARFGEF2--RNA5SP486^ARFGEF2^ENSG00000124198.10" ; gene_name ARFGEF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032687.2" ; havana_transcript "OTTHUMT00000079627.2" ; hgnc_id "HGNC:15853" ; level 2 ; orig_coord_info "chr20,48921890,48922010,+" ; protein_id "ENSP00000360985.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARFGEF2--RNA5SP486^ENST00000371917.5" ; transcript_name "ARFGEF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF2--RNU7-173P HAVANA gene 1001 43857 . + . FI_gene_label "ARFGEF2^ENSG00000124198.10" ; ID "ARFGEF2--RNU7-173P^ARFGEF2^ENSG00000124198.10" ; ccdsid "CCDS13411.1" ; exon_id "ENSE00001456459.4" ; exon_number 1 ; gene_id "ARFGEF2--RNU7-173P^ARFGEF2^ENSG00000124198.10" ; gene_name ARFGEF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032687.2" ; havana_transcript "OTTHUMT00000079627.2" ; hgnc_id "HGNC:15853" ; level 2 ; orig_coord_info "chr20,48921890,48922010,+" ; protein_id "ENSP00000360985.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARFGEF2--RNU7-173P^ENST00000371917.5" ; transcript_name "ARFGEF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF2--RNU7-173P HAVANA mRNA 1001 43857 . + . FI_gene_label "ARFGEF2^ENSG00000124198.10" ; ID "ARFGEF2--RNU7-173P^ENST00000371917.5" ; Parent "ARFGEF2--RNU7-173P^ARFGEF2^ENSG00000124198.10" ; ccdsid "CCDS13411.1" ; exon_id "ENSE00001456459.4" ; exon_number 1 ; gene_id "ARFGEF2--RNU7-173P^ARFGEF2^ENSG00000124198.10" ; gene_name ARFGEF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032687.2" ; havana_transcript "OTTHUMT00000079627.2" ; hgnc_id "HGNC:15853" ; level 2 ; orig_coord_info "chr20,48921890,48922010,+" ; protein_id "ENSP00000360985.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARFGEF2--RNU7-173P^ENST00000371917.5" ; transcript_name "ARFGEF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF2--RNU7-92P HAVANA gene 1001 43857 . + . FI_gene_label "ARFGEF2^ENSG00000124198.10" ; ID "ARFGEF2--RNU7-92P^ARFGEF2^ENSG00000124198.10" ; ccdsid "CCDS13411.1" ; exon_id "ENSE00001456459.4" ; exon_number 1 ; gene_id "ARFGEF2--RNU7-92P^ARFGEF2^ENSG00000124198.10" ; gene_name ARFGEF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032687.2" ; havana_transcript "OTTHUMT00000079627.2" ; hgnc_id "HGNC:15853" ; level 2 ; orig_coord_info "chr20,48921890,48922010,+" ; protein_id "ENSP00000360985.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARFGEF2--RNU7-92P^ENST00000371917.5" ; transcript_name "ARFGEF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF2--RNU7-92P HAVANA mRNA 1001 43857 . + . FI_gene_label "ARFGEF2^ENSG00000124198.10" ; ID "ARFGEF2--RNU7-92P^ENST00000371917.5" ; Parent "ARFGEF2--RNU7-92P^ARFGEF2^ENSG00000124198.10" ; ccdsid "CCDS13411.1" ; exon_id "ENSE00001456459.4" ; exon_number 1 ; gene_id "ARFGEF2--RNU7-92P^ARFGEF2^ENSG00000124198.10" ; gene_name ARFGEF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032687.2" ; havana_transcript "OTTHUMT00000079627.2" ; hgnc_id "HGNC:15853" ; level 2 ; orig_coord_info "chr20,48921890,48922010,+" ; protein_id "ENSP00000360985.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARFGEF2--RNU7-92P^ENST00000371917.5" ; transcript_name "ARFGEF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARFGEF2--SRMP1 HAVANA gene 1001 43857 . + . FI_gene_label "ARFGEF2^ENSG00000124198.10" ; ID "ARFGEF2--SRMP1^ARFGEF2^ENSG00000124198.10" ; ccdsid "CCDS13411.1" ; exon_id "ENSE00001456459.4" ; exon_number 1 ; gene_id "ARFGEF2--SRMP1^ARFGEF2^ENSG00000124198.10" ; gene_name ARFGEF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032687.2" ; havana_transcript "OTTHUMT00000079627.2" ; hgnc_id "HGNC:15853" ; level 2 ; orig_coord_info "chr20,48921890,48922010,+" ; protein_id "ENSP00000360985.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARFGEF2--SRMP1^ENST00000371917.5" ; transcript_name "ARFGEF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARFGEF2--SRMP1 HAVANA mRNA 1001 43857 . + . FI_gene_label "ARFGEF2^ENSG00000124198.10" ; ID "ARFGEF2--SRMP1^ENST00000371917.5" ; Parent "ARFGEF2--SRMP1^ARFGEF2^ENSG00000124198.10" ; ccdsid "CCDS13411.1" ; exon_id "ENSE00001456459.4" ; exon_number 1 ; gene_id "ARFGEF2--SRMP1^ARFGEF2^ENSG00000124198.10" ; gene_name ARFGEF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032687.2" ; havana_transcript "OTTHUMT00000079627.2" ; hgnc_id "HGNC:15853" ; level 2 ; orig_coord_info "chr20,48921890,48922010,+" ; protein_id "ENSP00000360985.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "ARFGEF2--SRMP1^ENST00000371917.5" ; transcript_name "ARFGEF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B3GALNT2--THSD7B ENSEMBL gene 29332 64010 . + . FI_gene_label "THSD7B^ENSG00000144229.12" ; ID "B3GALNT2--THSD7B^THSD7B^ENSG00000144229.12" ; exon_id "ENSE00001528676.1" ; exon_number 1 ; gene_id "B3GALNT2--THSD7B^THSD7B^ENSG00000144229.12" ; gene_name THSD7B ; gene_type protein_coding ; havana_gene "OTTHUMG00000153590.4" ; hgnc_id "HGNC:29348" ; level 3 ; orig_coord_info "chr2,136882179,136882317,+" ; protein_id "ENSP00000272643.4" ; tag basic appris_alternative_2 ; transcript_id "B3GALNT2--THSD7B^ENST00000272643.7" ; transcript_name "THSD7B-201" ; transcript_support_level 5 ; transcript_type protein_coding
B3GALNT2--THSD7B ENSEMBL mRNA 29332 64010 . + . FI_gene_label "THSD7B^ENSG00000144229.12" ; ID "B3GALNT2--THSD7B^ENST00000272643.7" ; Parent "B3GALNT2--THSD7B^THSD7B^ENSG00000144229.12" ; exon_id "ENSE00001528676.1" ; exon_number 1 ; gene_id "B3GALNT2--THSD7B^THSD7B^ENSG00000144229.12" ; gene_name THSD7B ; gene_type protein_coding ; havana_gene "OTTHUMG00000153590.4" ; hgnc_id "HGNC:29348" ; level 3 ; orig_coord_info "chr2,136882179,136882317,+" ; protein_id "ENSP00000272643.4" ; tag basic appris_alternative_2 ; transcript_id "B3GALNT2--THSD7B^ENST00000272643.7" ; transcript_name "THSD7B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
B3GALNT2--THSD7B HAVANA gene 1031 12908 . + . FI_gene_label "B3GALNT2^ENSG00000162885.14" ; ID "B3GALNT2--THSD7B^B3GALNT2^ENSG00000162885.14" ; ccdsid "CCDS60453.1" ; exon_id "ENSE00001121490.4" ; exon_number 1 ; gene_id "B3GALNT2--THSD7B^B3GALNT2^ENSG00000162885.14" ; gene_name B3GALNT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040468.6" ; havana_transcript "OTTHUMT00000097377.2" ; hgnc_id "HGNC:28596" ; level 2 ; orig_coord_info "chr1,235504141,235504252,-" ; protein_id "ENSP00000315678.3" ; tag basic CCDS ; transcript_id "B3GALNT2--THSD7B^ENST00000313984.3" ; transcript_name "B3GALNT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
B3GALNT2--THSD7B HAVANA mRNA 1031 12908 . + . FI_gene_label "B3GALNT2^ENSG00000162885.14" ; ID "B3GALNT2--THSD7B^ENST00000313984.3" ; Parent "B3GALNT2--THSD7B^B3GALNT2^ENSG00000162885.14" ; ccdsid "CCDS60453.1" ; exon_id "ENSE00001121490.4" ; exon_number 1 ; gene_id "B3GALNT2--THSD7B^B3GALNT2^ENSG00000162885.14" ; gene_name B3GALNT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000040468.6" ; havana_transcript "OTTHUMT00000097377.2" ; hgnc_id "HGNC:28596" ; level 2 ; orig_coord_info "chr1,235504141,235504252,-" ; protein_id "ENSP00000315678.3" ; tag basic CCDS ; transcript_id "B3GALNT2--THSD7B^ENST00000313984.3" ; transcript_name "B3GALNT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAZ2B--LINC02478 HAVANA gene 32403 39805 . + . FI_gene_label "BAZ2B^ENSG00000123636.18" ; ID "BAZ2B--LINC02478^BAZ2B^ENSG00000123636.18" ; exon_id "ENSE00001666737.1" ; exon_number 1 ; gene_id "BAZ2B--LINC02478^BAZ2B^ENSG00000123636.18" ; gene_name BAZ2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000132027.9" ; havana_transcript "OTTHUMT00000333630.2" ; hgnc_id "HGNC:963" ; level 2 ; orig_coord_info "chr2,159400599,159400650,-" ; protein_id "ENSP00000294905.4" ; tag cds_start_NF mRNA_end_NF cds_end_NF mRNA_start_NF ; transcript_id "BAZ2B--LINC02478^ENST00000294905.4" ; transcript_name "BAZ2B-201" ; transcript_support_level 4 ; transcript_type protein_coding
BAZ2B--LINC02478 HAVANA mRNA 32403 39805 . + . FI_gene_label "BAZ2B^ENSG00000123636.18" ; ID "BAZ2B--LINC02478^ENST00000294905.4" ; Parent "BAZ2B--LINC02478^BAZ2B^ENSG00000123636.18" ; exon_id "ENSE00001666737.1" ; exon_number 1 ; gene_id "BAZ2B--LINC02478^BAZ2B^ENSG00000123636.18" ; gene_name BAZ2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000132027.9" ; havana_transcript "OTTHUMT00000333630.2" ; hgnc_id "HGNC:963" ; level 2 ; orig_coord_info "chr2,159400599,159400650,-" ; protein_id "ENSP00000294905.4" ; tag cds_start_NF mRNA_end_NF cds_end_NF mRNA_start_NF ; transcript_id "BAZ2B--LINC02478^ENST00000294905.4" ; transcript_name "BAZ2B-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
BAZ2B--RBMS1 HAVANA gene 32403 39805 . + . FI_gene_label "BAZ2B^ENSG00000123636.18" ; ID "BAZ2B--RBMS1^BAZ2B^ENSG00000123636.18" ; exon_id "ENSE00001666737.1" ; exon_number 1 ; gene_id "BAZ2B--RBMS1^BAZ2B^ENSG00000123636.18" ; gene_name BAZ2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000132027.9" ; havana_transcript "OTTHUMT00000333630.2" ; hgnc_id "HGNC:963" ; level 2 ; orig_coord_info "chr2,159400599,159400650,-" ; protein_id "ENSP00000294905.4" ; tag cds_start_NF mRNA_end_NF cds_end_NF mRNA_start_NF ; transcript_id "BAZ2B--RBMS1^ENST00000294905.4" ; transcript_name "BAZ2B-201" ; transcript_support_level 4 ; transcript_type protein_coding
BAZ2B--RBMS1 HAVANA mRNA 32403 39805 . + . FI_gene_label "BAZ2B^ENSG00000123636.18" ; ID "BAZ2B--RBMS1^ENST00000294905.4" ; Parent "BAZ2B--RBMS1^BAZ2B^ENSG00000123636.18" ; exon_id "ENSE00001666737.1" ; exon_number 1 ; gene_id "BAZ2B--RBMS1^BAZ2B^ENSG00000123636.18" ; gene_name BAZ2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000132027.9" ; havana_transcript "OTTHUMT00000333630.2" ; hgnc_id "HGNC:963" ; level 2 ; orig_coord_info "chr2,159400599,159400650,-" ; protein_id "ENSP00000294905.4" ; tag cds_start_NF mRNA_end_NF cds_end_NF mRNA_start_NF ; transcript_id "BAZ2B--RBMS1^ENST00000294905.4" ; transcript_name "BAZ2B-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
BAZ2B--RBMS1 HAVANA gene 61202 88846 . + . FI_gene_label "RBMS1^ENSG00000153250.20" ; ID "BAZ2B--RBMS1^RBMS1^ENSG00000153250.20" ; ccdsid "CCDS2213.1" ; exon_id "ENSE00002037352.2" ; exon_number 1 ; gene_id "BAZ2B--RBMS1^RBMS1^ENSG00000153250.20" ; gene_name RBMS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132031.10" ; havana_transcript "OTTHUMT00000255043.5" ; hgnc_id "HGNC:9907" ; level 2 ; orig_coord_info "chr2,160493289,160493363,-" ; protein_id "ENSP00000294904.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAZ2B--RBMS1^ENST00000348849.8" ; transcript_name "RBMS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAZ2B--RBMS1 HAVANA mRNA 61202 88846 . + . FI_gene_label "RBMS1^ENSG00000153250.20" ; ID "BAZ2B--RBMS1^ENST00000348849.8" ; Parent "BAZ2B--RBMS1^RBMS1^ENSG00000153250.20" ; ccdsid "CCDS2213.1" ; exon_id "ENSE00002037352.2" ; exon_number 1 ; gene_id "BAZ2B--RBMS1^RBMS1^ENSG00000153250.20" ; gene_name RBMS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132031.10" ; havana_transcript "OTTHUMT00000255043.5" ; hgnc_id "HGNC:9907" ; level 2 ; orig_coord_info "chr2,160493289,160493363,-" ; protein_id "ENSP00000294904.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAZ2B--RBMS1^ENST00000348849.8" ; transcript_name "RBMS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCCIP--FANK1 HAVANA gene 1001 9034 . + . FI_gene_label "BCCIP^ENSG00000107949.17" ; ID "BCCIP--FANK1^BCCIP^ENSG00000107949.17" ; ccdsid "CCDS7651.1" ; exon_id "ENSE00000987849.5" ; exon_number 1 ; gene_id "BCCIP--FANK1^BCCIP^ENSG00000107949.17" ; gene_name BCCIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000019237.3" ; havana_transcript "OTTHUMT00000050941.2" ; hgnc_id "HGNC:978" ; level 2 ; orig_coord_info "chr10,125823558,125823722,+" ; protein_id "ENSP00000278100.6" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "BCCIP--FANK1^ENST00000278100.11" ; transcript_name "BCCIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCCIP--FANK1 HAVANA mRNA 1001 9034 . + . FI_gene_label "BCCIP^ENSG00000107949.17" ; ID "BCCIP--FANK1^ENST00000278100.11" ; Parent "BCCIP--FANK1^BCCIP^ENSG00000107949.17" ; ccdsid "CCDS7651.1" ; exon_id "ENSE00000987849.5" ; exon_number 1 ; gene_id "BCCIP--FANK1^BCCIP^ENSG00000107949.17" ; gene_name BCCIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000019237.3" ; havana_transcript "OTTHUMT00000050941.2" ; hgnc_id "HGNC:978" ; level 2 ; orig_coord_info "chr10,125823558,125823722,+" ; protein_id "ENSP00000278100.6" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "BCCIP--FANK1^ENST00000278100.11" ; transcript_name "BCCIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCCIP--FANK1 HAVANA gene 18644 23477 . + . FI_gene_label "FANK1^ENSG00000203780.12" ; ID "BCCIP--FANK1^FANK1^ENSG00000203780.12" ; exon_id "ENSE00003533168.1" ; exon_number 2 ; gene_id "BCCIP--FANK1^FANK1^ENSG00000203780.12" ; gene_name FANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019241.7" ; havana_transcript "OTTHUMT00000050959.1" ; hgnc_id "HGNC:23527" ; level 2 ; orig_coord_info "chr10,125980166,125980338,+" ; protein_id "ENSP00000357678.1" ; tag basic ; transcript_id "BCCIP--FANK1^ENST00000368689.1" ; transcript_name "FANK1-201" ; transcript_support_level 3 ; transcript_type protein_coding
BCCIP--FANK1 HAVANA mRNA 18644 23477 . + . FI_gene_label "FANK1^ENSG00000203780.12" ; ID "BCCIP--FANK1^ENST00000368689.1" ; Parent "BCCIP--FANK1^FANK1^ENSG00000203780.12" ; exon_id "ENSE00003533168.1" ; exon_number 2 ; gene_id "BCCIP--FANK1^FANK1^ENSG00000203780.12" ; gene_name FANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019241.7" ; havana_transcript "OTTHUMT00000050959.1" ; hgnc_id "HGNC:23527" ; level 2 ; orig_coord_info "chr10,125980166,125980338,+" ; protein_id "ENSP00000357678.1" ; tag basic ; transcript_id "BCCIP--FANK1^ENST00000368689.1" ; transcript_name "FANK1-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
BMS1P2--PTPN20 ENSEMBL gene 13681 32954 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "BMS1P2--PTPN20^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "BMS1P2--PTPN20^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "BMS1P2--PTPN20^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
BMS1P2--PTPN20 ENSEMBL mRNA 13681 32954 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "BMS1P2--PTPN20^ENST00000374218.6" ; Parent "BMS1P2--PTPN20^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "BMS1P2--PTPN20^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "BMS1P2--PTPN20^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BNIP1--CREBRF HAVANA gene 1001 10165 . + . FI_gene_label "BNIP1^ENSG00000113734.18" ; ID "BNIP1--CREBRF^BNIP1^ENSG00000113734.18" ; ccdsid "CCDS4385.1" ; exon_id "ENSE00001626705.1" ; exon_number 1 ; gene_id "BNIP1--CREBRF^BNIP1^ENSG00000113734.18" ; gene_name BNIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130521.4" ; havana_transcript "OTTHUMT00000252940.2" ; hgnc_id "HGNC:1082" ; level 2 ; orig_coord_info "chr5,173144546,173144629,+" ; protein_id "ENSP00000231668.9" ; tag basic CCDS ; transcript_id "BNIP1--CREBRF^ENST00000231668.13" ; transcript_name "BNIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
BNIP1--CREBRF HAVANA mRNA 1001 10165 . + . FI_gene_label "BNIP1^ENSG00000113734.18" ; ID "BNIP1--CREBRF^ENST00000231668.13" ; Parent "BNIP1--CREBRF^BNIP1^ENSG00000113734.18" ; ccdsid "CCDS4385.1" ; exon_id "ENSE00001626705.1" ; exon_number 1 ; gene_id "BNIP1--CREBRF^BNIP1^ENSG00000113734.18" ; gene_name BNIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130521.4" ; havana_transcript "OTTHUMT00000252940.2" ; hgnc_id "HGNC:1082" ; level 2 ; orig_coord_info "chr5,173144546,173144629,+" ; protein_id "ENSP00000231668.9" ; tag basic CCDS ; transcript_id "BNIP1--CREBRF^ENST00000231668.13" ; transcript_name "BNIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BNIP1--CREBRF HAVANA gene 13213 34409 . + . FI_gene_label "CREBRF^ENSG00000164463.12" ; ID "BNIP1--CREBRF^CREBRF^ENSG00000164463.12" ; ccdsid "CCDS34293.1" ; exon_id "ENSE00001369971.1" ; exon_number 2 ; gene_id "BNIP1--CREBRF^CREBRF^ENSG00000164463.12" ; gene_name CREBRF ; gene_type protein_coding ; havana_gene "OTTHUMG00000163322.3" ; havana_transcript "OTTHUMT00000372667.1" ; hgnc_id "HGNC:24050" ; level 2 ; orig_coord_info "chr5,173080776,173080784,+" ; protein_id "ENSP00000296953.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BNIP1--CREBRF^ENST00000296953.6" ; transcript_name "CREBRF-201" ; transcript_support_level 1 ; transcript_type protein_coding
BNIP1--CREBRF HAVANA mRNA 13213 34409 . + . FI_gene_label "CREBRF^ENSG00000164463.12" ; ID "BNIP1--CREBRF^ENST00000296953.6" ; Parent "BNIP1--CREBRF^CREBRF^ENSG00000164463.12" ; ccdsid "CCDS34293.1" ; exon_id "ENSE00001369971.1" ; exon_number 2 ; gene_id "BNIP1--CREBRF^CREBRF^ENSG00000164463.12" ; gene_name CREBRF ; gene_type protein_coding ; havana_gene "OTTHUMG00000163322.3" ; havana_transcript "OTTHUMT00000372667.1" ; hgnc_id "HGNC:24050" ; level 2 ; orig_coord_info "chr5,173080776,173080784,+" ; protein_id "ENSP00000296953.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BNIP1--CREBRF^ENST00000296953.6" ; transcript_name "CREBRF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BORCS8--ADAMTS10 ENSEMBL gene 14259 30579 . + . FI_gene_label "ADAMTS10^ENSG00000142303.14" ; ID "BORCS8--ADAMTS10^ADAMTS10^ENSG00000142303.14" ; ccdsid "CCDS12206.1" ; exon_id "ENSE00002727768.1" ; exon_number 2 ; gene_id "BORCS8--ADAMTS10^ADAMTS10^ENSG00000142303.14" ; gene_name ADAMTS10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182216.9" ; hgnc_id "HGNC:13201" ; level 3 ; orig_coord_info "chr19,8605623,8605710,-" ; protein_id "ENSP00000270328.4" ; tag basic appris_principal_1 CCDS ; transcript_id "BORCS8--ADAMTS10^ENST00000270328.8" ; transcript_name "ADAMTS10-201" ; transcript_support_level 5 ; transcript_type protein_coding
BORCS8--ADAMTS10 ENSEMBL mRNA 14259 30579 . + . FI_gene_label "ADAMTS10^ENSG00000142303.14" ; ID "BORCS8--ADAMTS10^ENST00000270328.8" ; Parent "BORCS8--ADAMTS10^ADAMTS10^ENSG00000142303.14" ; ccdsid "CCDS12206.1" ; exon_id "ENSE00002727768.1" ; exon_number 2 ; gene_id "BORCS8--ADAMTS10^ADAMTS10^ENSG00000142303.14" ; gene_name ADAMTS10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182216.9" ; hgnc_id "HGNC:13201" ; level 3 ; orig_coord_info "chr19,8605623,8605710,-" ; protein_id "ENSP00000270328.4" ; tag basic appris_principal_1 CCDS ; transcript_id "BORCS8--ADAMTS10^ENST00000270328.8" ; transcript_name "ADAMTS10-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BORCS8--ADAMTS10 HAVANA gene 1440 10163 . + . FI_gene_label "BORCS8^ENSG00000254901.8" ; ID "BORCS8--ADAMTS10^BORCS8^ENSG00000254901.8" ; ccdsid "CCDS46025.1" ; exon_id "ENSE00003843470.1" ; exon_number 1 ; gene_id "BORCS8--ADAMTS10^BORCS8^ENSG00000254901.8" ; gene_name BORCS8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166546.5" ; havana_transcript "OTTHUMT00000336091.5" ; hgnc_id "HGNC:37247" ; level 2 ; orig_coord_info "chr19,19192081,19192117,-" ; protein_id "ENSP00000425864.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BORCS8--ADAMTS10^ENST00000462790.8" ; transcript_name "BORCS8-202" ; transcript_support_level 1 ; transcript_type protein_coding
BORCS8--ADAMTS10 HAVANA mRNA 1440 10163 . + . FI_gene_label "BORCS8^ENSG00000254901.8" ; ID "BORCS8--ADAMTS10^ENST00000462790.8" ; Parent "BORCS8--ADAMTS10^BORCS8^ENSG00000254901.8" ; ccdsid "CCDS46025.1" ; exon_id "ENSE00003843470.1" ; exon_number 1 ; gene_id "BORCS8--ADAMTS10^BORCS8^ENSG00000254901.8" ; gene_name BORCS8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166546.5" ; havana_transcript "OTTHUMT00000336091.5" ; hgnc_id "HGNC:37247" ; level 2 ; orig_coord_info "chr19,19192081,19192117,-" ; protein_id "ENSP00000425864.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BORCS8--ADAMTS10^ENST00000462790.8" ; transcript_name "BORCS8-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C19orf48--KLK13 HAVANA gene 10406 16582 . + . FI_gene_label "KLK13^ENSG00000167759.13" ; ID "C19orf48--KLK13^KLK13^ENSG00000167759.13" ; exon_id "ENSE00001334645.3" ; exon_number 1 ; gene_id "C19orf48--KLK13^KLK13^ENSG00000167759.13" ; gene_name KLK13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182912.4" ; havana_transcript "OTTHUMT00000464296.2" ; hgnc_id "HGNC:6361" ; level 2 ; orig_coord_info "chr19,51065016,51065067,-" ; protein_id "ENSP00000156476.2" ; transcript_id "C19orf48--KLK13^ENST00000156476.6" ; transcript_name "KLK13-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
C19orf48--KLK13 HAVANA mRNA 10406 16582 . + . FI_gene_label "KLK13^ENSG00000167759.13" ; ID "C19orf48--KLK13^ENST00000156476.6" ; Parent "C19orf48--KLK13^KLK13^ENSG00000167759.13" ; exon_id "ENSE00001334645.3" ; exon_number 1 ; gene_id "C19orf48--KLK13^KLK13^ENSG00000167759.13" ; gene_name KLK13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182912.4" ; havana_transcript "OTTHUMT00000464296.2" ; hgnc_id "HGNC:6361" ; level 2 ; orig_coord_info "chr19,51065016,51065067,-" ; protein_id "ENSP00000156476.2" ; transcript_id "C19orf48--KLK13^ENST00000156476.6" ; transcript_name "KLK13-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
CAPRIN1--DEPDC7 HAVANA gene 26970 35016 . + . FI_gene_label "DEPDC7^ENSG00000121690.11" ; ID "CAPRIN1--DEPDC7^DEPDC7^ENSG00000121690.11" ; ccdsid "CCDS41632.1" ; exon_id "ENSE00001136826.5" ; exon_number 1 ; gene_id "CAPRIN1--DEPDC7^DEPDC7^ENSG00000121690.11" ; gene_name DEPDC7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166242.2" ; havana_transcript "OTTHUMT00000388655.2" ; hgnc_id "HGNC:29899" ; level 2 ; orig_coord_info "chr11,33015956,33016028,+" ; protein_id "ENSP00000241051.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CAPRIN1--DEPDC7^ENST00000241051.8" ; transcript_name "DEPDC7-201" ; transcript_support_level 1 ; transcript_type protein_coding
CAPRIN1--DEPDC7 HAVANA mRNA 26970 35016 . + . FI_gene_label "DEPDC7^ENSG00000121690.11" ; ID "CAPRIN1--DEPDC7^ENST00000241051.8" ; Parent "CAPRIN1--DEPDC7^DEPDC7^ENSG00000121690.11" ; ccdsid "CCDS41632.1" ; exon_id "ENSE00001136826.5" ; exon_number 1 ; gene_id "CAPRIN1--DEPDC7^DEPDC7^ENSG00000121690.11" ; gene_name DEPDC7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166242.2" ; havana_transcript "OTTHUMT00000388655.2" ; hgnc_id "HGNC:29899" ; level 2 ; orig_coord_info "chr11,33015956,33016028,+" ; protein_id "ENSP00000241051.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CAPRIN1--DEPDC7^ENST00000241051.8" ; transcript_name "DEPDC7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CAPRIN1--DEPDC7 HAVANA gene 1001 23967 . + . FI_gene_label "CAPRIN1^ENSG00000135387.21" ; ID "CAPRIN1--DEPDC7^CAPRIN1^ENSG00000135387.21" ; ccdsid "CCDS31453.1" ; exon_id "ENSE00003675040.1" ; exon_number 2 ; gene_id "CAPRIN1--DEPDC7^CAPRIN1^ENSG00000135387.21" ; gene_name CAPRIN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166248.5" ; havana_transcript "OTTHUMT00000388680.3" ; hgnc_id "HGNC:6743" ; level 2 ; orig_coord_info "chr11,34052421,34052636,+" ; protein_id "ENSP00000340329.4" ; tag not_organism_supported basic MANE_Select appris_principal_4 CCDS ; transcript_id "CAPRIN1--DEPDC7^ENST00000341394.9" ; transcript_name "CAPRIN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CAPRIN1--DEPDC7 HAVANA mRNA 1001 23967 . + . FI_gene_label "CAPRIN1^ENSG00000135387.21" ; ID "CAPRIN1--DEPDC7^ENST00000341394.9" ; Parent "CAPRIN1--DEPDC7^CAPRIN1^ENSG00000135387.21" ; ccdsid "CCDS31453.1" ; exon_id "ENSE00003675040.1" ; exon_number 2 ; gene_id "CAPRIN1--DEPDC7^CAPRIN1^ENSG00000135387.21" ; gene_name CAPRIN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166248.5" ; havana_transcript "OTTHUMT00000388680.3" ; hgnc_id "HGNC:6743" ; level 2 ; orig_coord_info "chr11,34052421,34052636,+" ; protein_id "ENSP00000340329.4" ; tag not_organism_supported basic MANE_Select appris_principal_4 CCDS ; transcript_id "CAPRIN1--DEPDC7^ENST00000341394.9" ; transcript_name "CAPRIN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC7--POFUT1 HAVANA gene 1001 25306 . + . FI_gene_label "CCDC7^ENSG00000216937.13" ; ID "CCDC7--POFUT1^CCDC7^ENSG00000216937.13" ; ccdsid "CCDS7173.1" ; exon_id "ENSE00002309284.1" ; exon_number 2 ; gene_id "CCDC7--POFUT1^CCDC7^ENSG00000216937.13" ; gene_name CCDC7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150517.6" ; havana_transcript "OTTHUMT00000047489.1" ; hgnc_id "HGNC:26533" ; level 2 ; orig_coord_info "chr10,32451643,32451921,+" ; protein_id "ENSP00000277657.6" ; tag basic appris_principal_4 CCDS ; transcript_id "CCDC7--POFUT1^ENST00000277657.12" ; transcript_name "CCDC7-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC7--POFUT1 HAVANA mRNA 1001 25306 . + . FI_gene_label "CCDC7^ENSG00000216937.13" ; ID "CCDC7--POFUT1^ENST00000277657.12" ; Parent "CCDC7--POFUT1^CCDC7^ENSG00000216937.13" ; ccdsid "CCDS7173.1" ; exon_id "ENSE00002309284.1" ; exon_number 2 ; gene_id "CCDC7--POFUT1^CCDC7^ENSG00000216937.13" ; gene_name CCDC7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150517.6" ; havana_transcript "OTTHUMT00000047489.1" ; hgnc_id "HGNC:26533" ; level 2 ; orig_coord_info "chr10,32451643,32451921,+" ; protein_id "ENSP00000277657.6" ; tag basic appris_principal_4 CCDS ; transcript_id "CCDC7--POFUT1^ENST00000277657.12" ; transcript_name "CCDC7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC7--POFUT1 HAVANA gene 57710 62502 . + . FI_gene_label "POFUT1^ENSG00000101346.14" ; ID "CCDC7--POFUT1^POFUT1^ENSG00000101346.14" ; ccdsid "CCDS13199.1" ; exon_id "ENSE00003532759.1" ; exon_number 1 ; gene_id "CCDC7--POFUT1^POFUT1^ENSG00000101346.14" ; gene_name POFUT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133268.3" ; havana_transcript "OTTHUMT00000078614.1" ; hgnc_id "HGNC:14988" ; level 2 ; orig_coord_info "chr20,32207942,32208065,+" ; protein_id "ENSP00000364882.3" ; tag basic CCDS ; transcript_id "CCDC7--POFUT1^ENST00000375730.3" ; transcript_name "POFUT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC7--POFUT1 HAVANA mRNA 57710 62502 . + . FI_gene_label "POFUT1^ENSG00000101346.14" ; ID "CCDC7--POFUT1^ENST00000375730.3" ; Parent "CCDC7--POFUT1^POFUT1^ENSG00000101346.14" ; ccdsid "CCDS13199.1" ; exon_id "ENSE00003532759.1" ; exon_number 1 ; gene_id "CCDC7--POFUT1^POFUT1^ENSG00000101346.14" ; gene_name POFUT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133268.3" ; havana_transcript "OTTHUMT00000078614.1" ; hgnc_id "HGNC:14988" ; level 2 ; orig_coord_info "chr20,32207942,32208065,+" ; protein_id "ENSP00000364882.3" ; tag basic CCDS ; transcript_id "CCDC7--POFUT1^ENST00000375730.3" ; transcript_name "POFUT1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CD59--GJA5 HAVANA gene 1001 12261 . + . FI_gene_label "CD59^ENSG00000085063.17" ; ID "CD59--GJA5^CD59^ENSG00000085063.17" ; ccdsid "CCDS7886.1" ; exon_id "ENSE00000824399.2" ; exon_number 3 ; gene_id "CD59--GJA5^CD59^ENSG00000085063.17" ; gene_name CD59 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192410.4" ; havana_transcript "OTTHUMT00000388811.3" ; hgnc_id "HGNC:1689" ; level 2 ; orig_coord_info "chr11,33722379,33722445,-" ; protein_id "ENSP00000340210.3" ; tag basic appris_principal_1 CCDS ; transcript_id "CD59--GJA5^ENST00000351554.8" ; transcript_name "CD59-201" ; transcript_support_level 2 ; transcript_type protein_coding
CD59--GJA5 HAVANA mRNA 1001 12261 . + . FI_gene_label "CD59^ENSG00000085063.17" ; ID "CD59--GJA5^ENST00000351554.8" ; Parent "CD59--GJA5^CD59^ENSG00000085063.17" ; ccdsid "CCDS7886.1" ; exon_id "ENSE00000824399.2" ; exon_number 3 ; gene_id "CD59--GJA5^CD59^ENSG00000085063.17" ; gene_name CD59 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192410.4" ; havana_transcript "OTTHUMT00000388811.3" ; hgnc_id "HGNC:1689" ; level 2 ; orig_coord_info "chr11,33722379,33722445,-" ; protein_id "ENSP00000340210.3" ; tag basic appris_principal_1 CCDS ; transcript_id "CD59--GJA5^ENST00000351554.8" ; transcript_name "CD59-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CD59--GJA5 HAVANA gene 22256 25250 . + . FI_gene_label "GJA5^ENSG00000265107.3" ; ID "CD59--GJA5^GJA5^ENSG00000265107.3" ; exon_id "ENSE00001655057.1" ; exon_number 2 ; gene_id "CD59--GJA5^GJA5^ENSG00000265107.3" ; gene_name GJA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014020.6" ; havana_transcript "OTTHUMT00000039423.2" ; hgnc_id "HGNC:4279" ; level 2 ; orig_coord_info "chr1,147758484,147759238,-" ; protein_id "ENSP00000407645.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "CD59--GJA5^ENST00000430508.1" ; transcript_name "GJA5-201" ; transcript_support_level 2 ; transcript_type protein_coding
CD59--GJA5 HAVANA mRNA 22256 25250 . + . FI_gene_label "GJA5^ENSG00000265107.3" ; ID "CD59--GJA5^ENST00000430508.1" ; Parent "CD59--GJA5^GJA5^ENSG00000265107.3" ; exon_id "ENSE00001655057.1" ; exon_number 2 ; gene_id "CD59--GJA5^GJA5^ENSG00000265107.3" ; gene_name GJA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014020.6" ; havana_transcript "OTTHUMT00000039423.2" ; hgnc_id "HGNC:4279" ; level 2 ; orig_coord_info "chr1,147758484,147759238,-" ; protein_id "ENSP00000407645.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "CD59--GJA5^ENST00000430508.1" ; transcript_name "GJA5-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CELF1--KBTBD4 HAVANA gene 3220 28655 . + . FI_gene_label "CELF1^ENSG00000149187.18" ; ID "CELF1--KBTBD4^CELF1^ENSG00000149187.18" ; ccdsid "CCDS7938.1" ; exon_id "ENSE00003637302.1" ; exon_number 2 ; gene_id "CELF1--KBTBD4^CELF1^ENSG00000149187.18" ; gene_name CELF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166526.6" ; havana_transcript "OTTHUMT00000398353.2" ; hgnc_id "HGNC:2549" ; level 2 ; orig_coord_info "chr11,47488837,47489014,-" ; protein_id "ENSP00000308386.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "CELF1--KBTBD4^ENST00000310513.10" ; transcript_name "CELF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CELF1--KBTBD4 HAVANA mRNA 3220 28655 . + . FI_gene_label "CELF1^ENSG00000149187.18" ; ID "CELF1--KBTBD4^ENST00000310513.10" ; Parent "CELF1--KBTBD4^CELF1^ENSG00000149187.18" ; ccdsid "CCDS7938.1" ; exon_id "ENSE00003637302.1" ; exon_number 2 ; gene_id "CELF1--KBTBD4^CELF1^ENSG00000149187.18" ; gene_name CELF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166526.6" ; havana_transcript "OTTHUMT00000398353.2" ; hgnc_id "HGNC:2549" ; level 2 ; orig_coord_info "chr11,47488837,47489014,-" ; protein_id "ENSP00000308386.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "CELF1--KBTBD4^ENST00000310513.10" ; transcript_name "CELF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CELF1--KBTBD4 ENSEMBL gene 31663 36955 . + . FI_gene_label "KBTBD4^ENSG00000123444.14" ; ID "CELF1--KBTBD4^KBTBD4^ENSG00000123444.14" ; ccdsid "CCDS7940.1" ; exon_id "ENSE00003626325.1" ; exon_number 2 ; gene_id "CELF1--KBTBD4^KBTBD4^ENSG00000123444.14" ; gene_name KBTBD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166894.5" ; hgnc_id "HGNC:23761" ; level 3 ; orig_coord_info "chr11,47577411,47577999,-" ; protein_id "ENSP00000378703.2" ; tag basic appris_principal_4 CCDS ; transcript_id "CELF1--KBTBD4^ENST00000395288.6" ; transcript_name "KBTBD4-201" ; transcript_support_level 2 ; transcript_type protein_coding
CELF1--KBTBD4 ENSEMBL mRNA 31663 36955 . + . FI_gene_label "KBTBD4^ENSG00000123444.14" ; ID "CELF1--KBTBD4^ENST00000395288.6" ; Parent "CELF1--KBTBD4^KBTBD4^ENSG00000123444.14" ; ccdsid "CCDS7940.1" ; exon_id "ENSE00003626325.1" ; exon_number 2 ; gene_id "CELF1--KBTBD4^KBTBD4^ENSG00000123444.14" ; gene_name KBTBD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166894.5" ; hgnc_id "HGNC:23761" ; level 3 ; orig_coord_info "chr11,47577411,47577999,-" ; protein_id "ENSP00000378703.2" ; tag basic appris_principal_4 CCDS ; transcript_id "CELF1--KBTBD4^ENST00000395288.6" ; transcript_name "KBTBD4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CEP43--PDE10A HAVANA gene 1092 15349 . + . FI_gene_label "CEP43^ENSG00000213066.13" ; ID "CEP43--PDE10A^CEP43^ENSG00000213066.13" ; ccdsid "CCDS5297.1" ; exon_id "ENSE00001934670.1" ; exon_number 1 ; gene_id "CEP43--PDE10A^CEP43^ENSG00000213066.13" ; gene_name CEP43 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016011.4" ; havana_transcript "OTTHUMT00000043100.1" ; hgnc_id "HGNC:17012" ; level 2 ; orig_coord_info "chr6,166999413,166999514,+" ; protein_id "ENSP00000230248.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "CEP43--PDE10A^ENST00000349556.4" ; transcript_name "CEP43-201" ; transcript_support_level 1 ; transcript_type protein_coding
CEP43--PDE10A HAVANA mRNA 1092 15349 . + . FI_gene_label "CEP43^ENSG00000213066.13" ; ID "CEP43--PDE10A^ENST00000349556.4" ; Parent "CEP43--PDE10A^CEP43^ENSG00000213066.13" ; ccdsid "CCDS5297.1" ; exon_id "ENSE00001934670.1" ; exon_number 1 ; gene_id "CEP43--PDE10A^CEP43^ENSG00000213066.13" ; gene_name CEP43 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016011.4" ; havana_transcript "OTTHUMT00000043100.1" ; hgnc_id "HGNC:17012" ; level 2 ; orig_coord_info "chr6,166999413,166999514,+" ; protein_id "ENSP00000230248.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "CEP43--PDE10A^ENST00000349556.4" ; transcript_name "CEP43-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP43--PDE10A ENSEMBL gene 60389 100900 . + . FI_gene_label "PDE10A^ENSG00000112541.18" ; ID "CEP43--PDE10A^PDE10A^ENSG00000112541.18" ; ccdsid "CCDS47513.1" ; exon_id "ENSE00001442893.1" ; exon_number 1 ; gene_id "CEP43--PDE10A^PDE10A^ENSG00000112541.18" ; gene_name PDE10A ; gene_type protein_coding ; havana_gene "OTTHUMG00000015986.5" ; hgnc_id "HGNC:8772" ; level 3 ; orig_coord_info "chr6,165661947,165662013,-" ; protein_id "ENSP00000355847.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "CEP43--PDE10A^ENST00000366882.6" ; transcript_name "PDE10A-201" ; transcript_support_level 5 ; transcript_type protein_coding
CEP43--PDE10A ENSEMBL mRNA 60389 100900 . + . FI_gene_label "PDE10A^ENSG00000112541.18" ; ID "CEP43--PDE10A^ENST00000366882.6" ; Parent "CEP43--PDE10A^PDE10A^ENSG00000112541.18" ; ccdsid "CCDS47513.1" ; exon_id "ENSE00001442893.1" ; exon_number 1 ; gene_id "CEP43--PDE10A^PDE10A^ENSG00000112541.18" ; gene_name PDE10A ; gene_type protein_coding ; havana_gene "OTTHUMG00000015986.5" ; hgnc_id "HGNC:8772" ; level 3 ; orig_coord_info "chr6,165661947,165662013,-" ; protein_id "ENSP00000355847.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "CEP43--PDE10A^ENST00000366882.6" ; transcript_name "PDE10A-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CNOT2--AKAP3 HAVANA gene 35748 44409 . + . FI_gene_label "AKAP3^ENSG00000111254.8" ; ID "CNOT2--AKAP3^AKAP3^ENSG00000111254.8" ; ccdsid "CCDS8531.1" ; exon_id "ENSE00003842372.1" ; exon_number 4 ; gene_id "CNOT2--AKAP3^AKAP3^ENSG00000111254.8" ; gene_name AKAP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168226.5" ; havana_transcript "OTTHUMT00000504410.2" ; hgnc_id "HGNC:373" ; level 2 ; orig_coord_info "chr12,4638101,4638196,-" ; protein_id "ENSP00000228850.1" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "CNOT2--AKAP3^ENST00000228850.6" ; transcript_name "AKAP3-201" ; transcript_support_level 5 ; transcript_type protein_coding
CNOT2--AKAP3 HAVANA mRNA 35748 44409 . + . FI_gene_label "AKAP3^ENSG00000111254.8" ; ID "CNOT2--AKAP3^ENST00000228850.6" ; Parent "CNOT2--AKAP3^AKAP3^ENSG00000111254.8" ; ccdsid "CCDS8531.1" ; exon_id "ENSE00003842372.1" ; exon_number 4 ; gene_id "CNOT2--AKAP3^AKAP3^ENSG00000111254.8" ; gene_name AKAP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168226.5" ; havana_transcript "OTTHUMT00000504410.2" ; hgnc_id "HGNC:373" ; level 2 ; orig_coord_info "chr12,4638101,4638196,-" ; protein_id "ENSP00000228850.1" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "CNOT2--AKAP3^ENST00000228850.6" ; transcript_name "AKAP3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CNOT2--AKAP3 HAVANA gene 1432 32747 . + . FI_gene_label "CNOT2^ENSG00000111596.14" ; ID "CNOT2--AKAP3^CNOT2^ENSG00000111596.14" ; ccdsid "CCDS31857.1" ; exon_id "ENSE00003652343.1" ; exon_number 2 ; gene_id "CNOT2--AKAP3^CNOT2^ENSG00000111596.14" ; gene_name CNOT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169481.8" ; havana_transcript "OTTHUMT00000404258.4" ; hgnc_id "HGNC:7878" ; level 2 ; orig_coord_info "chr12,70278227,70278274,+" ; protein_id "ENSP00000229195.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select CCDS ; transcript_id "CNOT2--AKAP3^ENST00000229195.8" ; transcript_name "CNOT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CNOT2--AKAP3 HAVANA mRNA 1432 32747 . + . FI_gene_label "CNOT2^ENSG00000111596.14" ; ID "CNOT2--AKAP3^ENST00000229195.8" ; Parent "CNOT2--AKAP3^CNOT2^ENSG00000111596.14" ; ccdsid "CCDS31857.1" ; exon_id "ENSE00003652343.1" ; exon_number 2 ; gene_id "CNOT2--AKAP3^CNOT2^ENSG00000111596.14" ; gene_name CNOT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169481.8" ; havana_transcript "OTTHUMT00000404258.4" ; hgnc_id "HGNC:7878" ; level 2 ; orig_coord_info "chr12,70278227,70278274,+" ; protein_id "ENSP00000229195.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select CCDS ; transcript_id "CNOT2--AKAP3^ENST00000229195.8" ; transcript_name "CNOT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSTF3--CCDC73 HAVANA gene 1892 22999 . + . FI_gene_label "CSTF3^ENSG00000176102.13" ; ID "CSTF3--CCDC73^CSTF3^ENSG00000176102.13" ; ccdsid "CCDS7883.1" ; exon_id "ENSE00002157535.2" ; exon_number 1 ; gene_id "CSTF3--CCDC73^CSTF3^ENSG00000176102.13" ; gene_name CSTF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166268.5" ; havana_transcript "OTTHUMT00000388801.2" ; hgnc_id "HGNC:2485" ; level 2 ; orig_coord_info "chr11,33161299,33161325,-" ; protein_id "ENSP00000315791.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSTF3--CCDC73^ENST00000323959.9" ; transcript_name "CSTF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSTF3--CCDC73 HAVANA mRNA 1892 22999 . + . FI_gene_label "CSTF3^ENSG00000176102.13" ; ID "CSTF3--CCDC73^ENST00000323959.9" ; Parent "CSTF3--CCDC73^CSTF3^ENSG00000176102.13" ; ccdsid "CCDS7883.1" ; exon_id "ENSE00002157535.2" ; exon_number 1 ; gene_id "CSTF3--CCDC73^CSTF3^ENSG00000176102.13" ; gene_name CSTF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166268.5" ; havana_transcript "OTTHUMT00000388801.2" ; hgnc_id "HGNC:2485" ; level 2 ; orig_coord_info "chr11,33161299,33161325,-" ; protein_id "ENSP00000315791.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CSTF3--CCDC73^ENST00000323959.9" ; transcript_name "CSTF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSTF3--CCDC73 HAVANA gene 27280 50863 . + . FI_gene_label "CCDC73^ENSG00000186714.12" ; ID "CSTF3--CCDC73^CCDC73^ENSG00000186714.12" ; ccdsid "CCDS41630.1" ; exon_id "ENSE00003499831.1" ; exon_number 2 ; gene_id "CSTF3--CCDC73^CCDC73^ENSG00000186714.12" ; gene_name CCDC73 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166279.3" ; havana_transcript "OTTHUMT00000388874.2" ; hgnc_id "HGNC:23261" ; level 2 ; orig_coord_info "chr11,32760109,32760243,-" ; protein_id "ENSP00000335325.5" ; tag basic appris_principal_1 CCDS ; transcript_id "CSTF3--CCDC73^ENST00000335185.9" ; transcript_name "CCDC73-201" ; transcript_support_level 2 ; transcript_type protein_coding
CSTF3--CCDC73 HAVANA mRNA 27280 50863 . + . FI_gene_label "CCDC73^ENSG00000186714.12" ; ID "CSTF3--CCDC73^ENST00000335185.9" ; Parent "CSTF3--CCDC73^CCDC73^ENSG00000186714.12" ; ccdsid "CCDS41630.1" ; exon_id "ENSE00003499831.1" ; exon_number 2 ; gene_id "CSTF3--CCDC73^CCDC73^ENSG00000186714.12" ; gene_name CCDC73 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166279.3" ; havana_transcript "OTTHUMT00000388874.2" ; hgnc_id "HGNC:23261" ; level 2 ; orig_coord_info "chr11,32760109,32760243,-" ; protein_id "ENSP00000335325.5" ; tag basic appris_principal_1 CCDS ; transcript_id "CSTF3--CCDC73^ENST00000335185.9" ; transcript_name "CCDC73-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CUX1--ELMO1 HAVANA gene 2191 45602 . + . FI_gene_label "CUX1^ENSG00000257923.12" ; ID "CUX1--ELMO1^CUX1^ENSG00000257923.12" ; ccdsid "CCDS5721.1" ; exon_id "ENSE00001332236.4" ; exon_number 1 ; gene_id "CUX1--ELMO1^CUX1^ENSG00000257923.12" ; gene_name CUX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157129.14" ; havana_transcript "OTTHUMT00000347535.3" ; hgnc_id "HGNC:2557" ; level 2 ; orig_coord_info "chr7,101817640,101817669,+" ; protein_id "ENSP00000292535.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CUX1--ELMO1^ENST00000292535.12" ; transcript_name "CUX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CUX1--ELMO1 HAVANA mRNA 2191 45602 . + . FI_gene_label "CUX1^ENSG00000257923.12" ; ID "CUX1--ELMO1^ENST00000292535.12" ; Parent "CUX1--ELMO1^CUX1^ENSG00000257923.12" ; ccdsid "CCDS5721.1" ; exon_id "ENSE00001332236.4" ; exon_number 1 ; gene_id "CUX1--ELMO1^CUX1^ENSG00000257923.12" ; gene_name CUX1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157129.14" ; havana_transcript "OTTHUMT00000347535.3" ; hgnc_id "HGNC:2557" ; level 2 ; orig_coord_info "chr7,101817640,101817669,+" ; protein_id "ENSP00000292535.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CUX1--ELMO1^ENST00000292535.12" ; transcript_name "CUX1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CUX1--ELMO1 HAVANA gene 57995 97781 . + . FI_gene_label "ELMO1^ENSG00000155849.16" ; ID "CUX1--ELMO1^ELMO1^ENSG00000155849.16" ; ccdsid "CCDS5449.1" ; exon_id "ENSE00003644365.1" ; exon_number 2 ; gene_id "CUX1--ELMO1^ELMO1^ENSG00000155849.16" ; gene_name ELMO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023701.8" ; havana_transcript "OTTHUMT00000219830.4" ; hgnc_id "HGNC:16286" ; level 2 ; orig_coord_info "chr7,37342613,37342690,-" ; protein_id "ENSP00000312185.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CUX1--ELMO1^ENST00000310758.9" ; transcript_name "ELMO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CUX1--ELMO1 HAVANA mRNA 57995 97781 . + . FI_gene_label "ELMO1^ENSG00000155849.16" ; ID "CUX1--ELMO1^ENST00000310758.9" ; Parent "CUX1--ELMO1^ELMO1^ENSG00000155849.16" ; ccdsid "CCDS5449.1" ; exon_id "ENSE00003644365.1" ; exon_number 2 ; gene_id "CUX1--ELMO1^ELMO1^ENSG00000155849.16" ; gene_name ELMO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023701.8" ; havana_transcript "OTTHUMT00000219830.4" ; hgnc_id "HGNC:16286" ; level 2 ; orig_coord_info "chr7,37342613,37342690,-" ; protein_id "ENSP00000312185.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CUX1--ELMO1^ENST00000310758.9" ; transcript_name "ELMO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CXADR--RRP1B HAVANA gene 1001 12106 . + . FI_gene_label "CXADR^ENSG00000154639.19" ; ID "CXADR--RRP1B^CXADR^ENSG00000154639.19" ; ccdsid "CCDS33519.1" ; exon_id "ENSE00001356018.5" ; exon_number 1 ; gene_id "CXADR--RRP1B^CXADR^ENSG00000154639.19" ; gene_name CXADR ; gene_type protein_coding ; havana_gene "OTTHUMG00000074508.4" ; havana_transcript "OTTHUMT00000158209.2" ; hgnc_id "HGNC:2559" ; level 2 ; orig_coord_info "chr21,17513130,17513172,+" ; protein_id "ENSP00000284878.7" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "CXADR--RRP1B^ENST00000284878.12" ; transcript_name "CXADR-201" ; transcript_support_level 1 ; transcript_type protein_coding
CXADR--RRP1B HAVANA mRNA 1001 12106 . + . FI_gene_label "CXADR^ENSG00000154639.19" ; ID "CXADR--RRP1B^ENST00000284878.12" ; Parent "CXADR--RRP1B^CXADR^ENSG00000154639.19" ; ccdsid "CCDS33519.1" ; exon_id "ENSE00001356018.5" ; exon_number 1 ; gene_id "CXADR--RRP1B^CXADR^ENSG00000154639.19" ; gene_name CXADR ; gene_type protein_coding ; havana_gene "OTTHUMG00000074508.4" ; havana_transcript "OTTHUMT00000158209.2" ; hgnc_id "HGNC:2559" ; level 2 ; orig_coord_info "chr21,17513130,17513172,+" ; protein_id "ENSP00000284878.7" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "CXADR--RRP1B^ENST00000284878.12" ; transcript_name "CXADR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CXADR--RRP1B HAVANA gene 16535 34616 . + . FI_gene_label "RRP1B^ENSG00000160208.13" ; ID "CXADR--RRP1B^RRP1B^ENSG00000160208.13" ; ccdsid "CCDS33577.1" ; exon_id "ENSE00001941645.2" ; exon_number 1 ; gene_id "CXADR--RRP1B^RRP1B^ENSG00000160208.13" ; gene_name RRP1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000086872.4" ; havana_transcript "OTTHUMT00000195651.3" ; hgnc_id "HGNC:23818" ; level 2 ; orig_coord_info "chr21,43659665,43659794,+" ; protein_id "ENSP00000339145.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CXADR--RRP1B^ENST00000340648.6" ; transcript_name "RRP1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CXADR--RRP1B HAVANA mRNA 16535 34616 . + . FI_gene_label "RRP1B^ENSG00000160208.13" ; ID "CXADR--RRP1B^ENST00000340648.6" ; Parent "CXADR--RRP1B^RRP1B^ENSG00000160208.13" ; ccdsid "CCDS33577.1" ; exon_id "ENSE00001941645.2" ; exon_number 1 ; gene_id "CXADR--RRP1B^RRP1B^ENSG00000160208.13" ; gene_name RRP1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000086872.4" ; havana_transcript "OTTHUMT00000195651.3" ; hgnc_id "HGNC:23818" ; level 2 ; orig_coord_info "chr21,43659665,43659794,+" ; protein_id "ENSP00000339145.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CXADR--RRP1B^ENST00000340648.6" ; transcript_name "RRP1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CXADR--RSPH1 HAVANA gene 1001 12106 . + . FI_gene_label "CXADR^ENSG00000154639.19" ; ID "CXADR--RSPH1^CXADR^ENSG00000154639.19" ; ccdsid "CCDS33519.1" ; exon_id "ENSE00001356018.5" ; exon_number 1 ; gene_id "CXADR--RSPH1^CXADR^ENSG00000154639.19" ; gene_name CXADR ; gene_type protein_coding ; havana_gene "OTTHUMG00000074508.4" ; havana_transcript "OTTHUMT00000158209.2" ; hgnc_id "HGNC:2559" ; level 2 ; orig_coord_info "chr21,17513130,17513172,+" ; protein_id "ENSP00000284878.7" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "CXADR--RSPH1^ENST00000284878.12" ; transcript_name "CXADR-201" ; transcript_support_level 1 ; transcript_type protein_coding
CXADR--RSPH1 HAVANA mRNA 1001 12106 . + . FI_gene_label "CXADR^ENSG00000154639.19" ; ID "CXADR--RSPH1^ENST00000284878.12" ; Parent "CXADR--RSPH1^CXADR^ENSG00000154639.19" ; ccdsid "CCDS33519.1" ; exon_id "ENSE00001356018.5" ; exon_number 1 ; gene_id "CXADR--RSPH1^CXADR^ENSG00000154639.19" ; gene_name CXADR ; gene_type protein_coding ; havana_gene "OTTHUMG00000074508.4" ; havana_transcript "OTTHUMT00000158209.2" ; hgnc_id "HGNC:2559" ; level 2 ; orig_coord_info "chr21,17513130,17513172,+" ; protein_id "ENSP00000284878.7" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "CXADR--RSPH1^ENST00000284878.12" ; transcript_name "CXADR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CXADR--RSPH1 HAVANA gene 16557 25516 . + . FI_gene_label "RSPH1^ENSG00000160188.10" ; ID "CXADR--RSPH1^RSPH1^ENSG00000160188.10" ; ccdsid "CCDS13688.1" ; exon_id "ENSE00001327702.4" ; exon_number 1 ; gene_id "CXADR--RSPH1^RSPH1^ENSG00000160188.10" ; gene_name RSPH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086804.3" ; havana_transcript "OTTHUMT00000195379.2" ; hgnc_id "HGNC:12371" ; level 2 ; orig_coord_info "chr21,42496133,42496186,-" ; protein_id "ENSP00000291536.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CXADR--RSPH1^ENST00000291536.8" ; transcript_name "RSPH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CXADR--RSPH1 HAVANA mRNA 16557 25516 . + . FI_gene_label "RSPH1^ENSG00000160188.10" ; ID "CXADR--RSPH1^ENST00000291536.8" ; Parent "CXADR--RSPH1^RSPH1^ENSG00000160188.10" ; ccdsid "CCDS13688.1" ; exon_id "ENSE00001327702.4" ; exon_number 1 ; gene_id "CXADR--RSPH1^RSPH1^ENSG00000160188.10" ; gene_name RSPH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086804.3" ; havana_transcript "OTTHUMT00000195379.2" ; hgnc_id "HGNC:12371" ; level 2 ; orig_coord_info "chr21,42496133,42496186,-" ; protein_id "ENSP00000291536.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CXADR--RSPH1^ENST00000291536.8" ; transcript_name "RSPH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DNM3--NFIB HAVANA gene 1003 30204 . + . FI_gene_label "DNM3^ENSG00000197959.14" ; ID "DNM3--NFIB^DNM3^ENSG00000197959.14" ; ccdsid "CCDS86032.1" ; exon_id "ENSE00001418141.1" ; exon_number 1 ; gene_id "DNM3--NFIB^DNM3^ENSG00000197959.14" ; gene_name DNM3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034913.5" ; havana_transcript "OTTHUMT00000084531.1" ; hgnc_id "HGNC:29125" ; level 2 ; orig_coord_info "chr1,171841657,171841817,+" ; protein_id "ENSP00000347457.5" ; tag not_organism_supported basic appris_alternative_1 CCDS ; transcript_id "DNM3--NFIB^ENST00000355305.9" ; transcript_name "DNM3-201" ; transcript_support_level 5 ; transcript_type protein_coding
DNM3--NFIB HAVANA mRNA 1003 30204 . + . FI_gene_label "DNM3^ENSG00000197959.14" ; ID "DNM3--NFIB^ENST00000355305.9" ; Parent "DNM3--NFIB^DNM3^ENSG00000197959.14" ; ccdsid "CCDS86032.1" ; exon_id "ENSE00001418141.1" ; exon_number 1 ; gene_id "DNM3--NFIB^DNM3^ENSG00000197959.14" ; gene_name DNM3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000034913.5" ; havana_transcript "OTTHUMT00000084531.1" ; hgnc_id "HGNC:29125" ; level 2 ; orig_coord_info "chr1,171841657,171841817,+" ; protein_id "ENSP00000347457.5" ; tag not_organism_supported basic appris_alternative_1 CCDS ; transcript_id "DNM3--NFIB^ENST00000355305.9" ; transcript_name "DNM3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DNM3--NFIB HAVANA gene 44832 48628 . + . FI_gene_label "NFIB^ENSG00000147862.17" ; ID "DNM3--NFIB^NFIB^ENSG00000147862.17" ; exon_id "ENSE00001816839.1" ; exon_number 1 ; gene_id "DNM3--NFIB^NFIB^ENSG00000147862.17" ; gene_name NFIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000021027.8" ; havana_transcript "OTTHUMT00000055473.1" ; hgnc_id "HGNC:7785" ; level 1 ; orig_coord_info "chr9,14313482,14313511,-" ; protein_id "ENSP00000370308.3" ; tag basic exp_conf ; transcript_id "DNM3--NFIB^ENST00000380921.3" ; transcript_name "NFIB-201" ; transcript_support_level 1 ; transcript_type protein_coding
DNM3--NFIB HAVANA mRNA 44832 48628 . + . FI_gene_label "NFIB^ENSG00000147862.17" ; ID "DNM3--NFIB^ENST00000380921.3" ; Parent "DNM3--NFIB^NFIB^ENSG00000147862.17" ; exon_id "ENSE00001816839.1" ; exon_number 1 ; gene_id "DNM3--NFIB^NFIB^ENSG00000147862.17" ; gene_name NFIB ; gene_type protein_coding ; havana_gene "OTTHUMG00000021027.8" ; havana_transcript "OTTHUMT00000055473.1" ; hgnc_id "HGNC:7785" ; level 1 ; orig_coord_info "chr9,14313482,14313511,-" ; protein_id "ENSP00000370308.3" ; tag basic exp_conf ; transcript_id "DNM3--NFIB^ENST00000380921.3" ; transcript_name "NFIB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EHF--CAT HAVANA gene 19894 34414 . + . FI_gene_label "CAT^ENSG00000121691.7" ; ID "EHF--CAT^CAT^ENSG00000121691.7" ; ccdsid "CCDS7891.1" ; exon_id "ENSE00003839429.1" ; exon_number 1 ; gene_id "EHF--CAT^CAT^ENSG00000121691.7" ; gene_name CAT ; gene_type protein_coding ; havana_gene "OTTHUMG00000044353.5" ; havana_transcript "OTTHUMT00000103197.3" ; hgnc_id "HGNC:1516" ; level 2 ; orig_coord_info "chr11,34439014,34439079,+" ; protein_id "ENSP00000241052.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EHF--CAT^ENST00000241052.5" ; transcript_name "CAT-201" ; transcript_support_level 1 ; transcript_type protein_coding
EHF--CAT HAVANA mRNA 19894 34414 . + . FI_gene_label "CAT^ENSG00000121691.7" ; ID "EHF--CAT^ENST00000241052.5" ; Parent "EHF--CAT^CAT^ENSG00000121691.7" ; ccdsid "CCDS7891.1" ; exon_id "ENSE00003839429.1" ; exon_number 1 ; gene_id "EHF--CAT^CAT^ENSG00000121691.7" ; gene_name CAT ; gene_type protein_coding ; havana_gene "OTTHUMG00000044353.5" ; havana_transcript "OTTHUMT00000103197.3" ; hgnc_id "HGNC:1516" ; level 2 ; orig_coord_info "chr11,34439014,34439079,+" ; protein_id "ENSP00000241052.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EHF--CAT^ENST00000241052.5" ; transcript_name "CAT-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EHF--CAT HAVANA gene 1001 16893 . + . FI_gene_label "EHF^ENSG00000135373.13" ; ID "EHF--CAT^EHF^ENSG00000135373.13" ; ccdsid "CCDS7894.1" ; exon_id "ENSE00003651425.1" ; exon_number 2 ; gene_id "EHF--CAT^EHF^ENSG00000135373.13" ; gene_name EHF ; gene_type protein_coding ; havana_gene "OTTHUMG00000166454.2" ; havana_transcript "OTTHUMT00000389852.1" ; hgnc_id "HGNC:3246" ; level 2 ; orig_coord_info "chr11,34642631,34642727,+" ; protein_id "ENSP00000257831.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EHF--CAT^ENST00000257831.8" ; transcript_name "EHF-201" ; transcript_support_level 1 ; transcript_type protein_coding
EHF--CAT HAVANA mRNA 1001 16893 . + . FI_gene_label "EHF^ENSG00000135373.13" ; ID "EHF--CAT^ENST00000257831.8" ; Parent "EHF--CAT^EHF^ENSG00000135373.13" ; ccdsid "CCDS7894.1" ; exon_id "ENSE00003651425.1" ; exon_number 2 ; gene_id "EHF--CAT^EHF^ENSG00000135373.13" ; gene_name EHF ; gene_type protein_coding ; havana_gene "OTTHUMG00000166454.2" ; havana_transcript "OTTHUMT00000389852.1" ; hgnc_id "HGNC:3246" ; level 2 ; orig_coord_info "chr11,34642631,34642727,+" ; protein_id "ENSP00000257831.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EHF--CAT^ENST00000257831.8" ; transcript_name "EHF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF4A2--RFC4 HAVANA gene 11270 20840 . + . FI_gene_label "RFC4^ENSG00000163918.12" ; ID "EIF4A2--RFC4^RFC4^ENSG00000163918.12" ; ccdsid "CCDS3283.1" ; exon_id "ENSE00003797953.1" ; exon_number 2 ; gene_id "EIF4A2--RFC4^RFC4^ENSG00000163918.12" ; gene_name RFC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156515.8" ; havana_transcript "OTTHUMT00000344471.1" ; hgnc_id "HGNC:9972" ; level 2 ; orig_coord_info "chr3,186804583,186804713,-" ; protein_id "ENSP00000296273.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EIF4A2--RFC4^ENST00000296273.7" ; transcript_name "RFC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF4A2--RFC4 HAVANA mRNA 11270 20840 . + . FI_gene_label "RFC4^ENSG00000163918.12" ; ID "EIF4A2--RFC4^ENST00000296273.7" ; Parent "EIF4A2--RFC4^RFC4^ENSG00000163918.12" ; ccdsid "CCDS3283.1" ; exon_id "ENSE00003797953.1" ; exon_number 2 ; gene_id "EIF4A2--RFC4^RFC4^ENSG00000163918.12" ; gene_name RFC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156515.8" ; havana_transcript "OTTHUMT00000344471.1" ; hgnc_id "HGNC:9972" ; level 2 ; orig_coord_info "chr3,186804583,186804713,-" ; protein_id "ENSP00000296273.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EIF4A2--RFC4^ENST00000296273.7" ; transcript_name "RFC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EIF4A2--RFC4 HAVANA gene 1373 7693 . + . FI_gene_label "EIF4A2^ENSG00000156976.17" ; ID "EIF4A2--RFC4^EIF4A2^ENSG00000156976.17" ; ccdsid "CCDS3282.1" ; exon_id "ENSE00003466757.1" ; exon_number 1 ; gene_id "EIF4A2--RFC4^EIF4A2^ENSG00000156976.17" ; gene_name EIF4A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156564.6" ; havana_transcript "OTTHUMT00000344609.2" ; hgnc_id "HGNC:3284" ; level 2 ; orig_coord_info "chr3,186783611,186783639,+" ; protein_id "ENSP00000326381.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "EIF4A2--RFC4^ENST00000323963.10" ; transcript_name "EIF4A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
EIF4A2--RFC4 HAVANA mRNA 1373 7693 . + . FI_gene_label "EIF4A2^ENSG00000156976.17" ; ID "EIF4A2--RFC4^ENST00000323963.10" ; Parent "EIF4A2--RFC4^EIF4A2^ENSG00000156976.17" ; ccdsid "CCDS3282.1" ; exon_id "ENSE00003466757.1" ; exon_number 1 ; gene_id "EIF4A2--RFC4^EIF4A2^ENSG00000156976.17" ; gene_name EIF4A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156564.6" ; havana_transcript "OTTHUMT00000344609.2" ; hgnc_id "HGNC:3284" ; level 2 ; orig_coord_info "chr3,186783611,186783639,+" ; protein_id "ENSP00000326381.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "EIF4A2--RFC4^ENST00000323963.10" ; transcript_name "EIF4A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EXD3--PNPLA7 HAVANA gene 33770 65604 . + . FI_gene_label "PNPLA7^ENSG00000130653.16" ; ID "EXD3--PNPLA7^PNPLA7^ENSG00000130653.16" ; ccdsid "CCDS7045.1" ; exon_id "ENSE00001938934.1" ; exon_number 1 ; gene_id "EXD3--PNPLA7^PNPLA7^ENSG00000130653.16" ; gene_name PNPLA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020990.12" ; havana_transcript "OTTHUMT00000254787.2" ; hgnc_id "HGNC:24768" ; level 2 ; orig_coord_info "chr9,137550168,137550197,-" ; protein_id "ENSP00000277531.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "EXD3--PNPLA7^ENST00000277531.8" ; transcript_name "PNPLA7-201" ; transcript_support_level 2 ; transcript_type protein_coding
EXD3--PNPLA7 HAVANA mRNA 33770 65604 . + . FI_gene_label "PNPLA7^ENSG00000130653.16" ; ID "EXD3--PNPLA7^ENST00000277531.8" ; Parent "EXD3--PNPLA7^PNPLA7^ENSG00000130653.16" ; ccdsid "CCDS7045.1" ; exon_id "ENSE00001938934.1" ; exon_number 1 ; gene_id "EXD3--PNPLA7^PNPLA7^ENSG00000130653.16" ; gene_name PNPLA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020990.12" ; havana_transcript "OTTHUMT00000254787.2" ; hgnc_id "HGNC:24768" ; level 2 ; orig_coord_info "chr9,137550168,137550197,-" ; protein_id "ENSP00000277531.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "EXD3--PNPLA7^ENST00000277531.8" ; transcript_name "PNPLA7-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
EXD3--PNPLA7 HAVANA gene 1050 30751 . + . FI_gene_label "EXD3^ENSG00000187609.16" ; ID "EXD3--PNPLA7^EXD3^ENSG00000187609.16" ; ccdsid "CCDS48066.1" ; exon_id "ENSE00003577896.1" ; exon_number 2 ; gene_id "EXD3--PNPLA7^EXD3^ENSG00000187609.16" ; gene_name EXD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156149.4" ; havana_transcript "OTTHUMT00000343182.2" ; hgnc_id "HGNC:26023" ; level 2 ; orig_coord_info "chr9,137395303,137395357,-" ; protein_id "ENSP00000340474.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXD3--PNPLA7^ENST00000340951.9" ; transcript_name "EXD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
EXD3--PNPLA7 HAVANA mRNA 1050 30751 . + . FI_gene_label "EXD3^ENSG00000187609.16" ; ID "EXD3--PNPLA7^ENST00000340951.9" ; Parent "EXD3--PNPLA7^EXD3^ENSG00000187609.16" ; ccdsid "CCDS48066.1" ; exon_id "ENSE00003577896.1" ; exon_number 2 ; gene_id "EXD3--PNPLA7^EXD3^ENSG00000187609.16" ; gene_name EXD3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156149.4" ; havana_transcript "OTTHUMT00000343182.2" ; hgnc_id "HGNC:26023" ; level 2 ; orig_coord_info "chr9,137395303,137395357,-" ; protein_id "ENSP00000340474.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EXD3--PNPLA7^ENST00000340951.9" ; transcript_name "EXD3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GALNT16--RAD51B HAVANA gene 1688 25270 . + . FI_gene_label "GALNT16^ENSG00000100626.17" ; ID "GALNT16--RAD51B^GALNT16^ENSG00000100626.17" ; ccdsid "CCDS32107.1" ; exon_id "ENSE00000807826.6" ; exon_number 1 ; gene_id "GALNT16--RAD51B^GALNT16^ENSG00000100626.17" ; gene_name GALNT16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171231.6" ; havana_transcript "OTTHUMT00000412434.2" ; hgnc_id "HGNC:23233" ; level 2 ; orig_coord_info "chr14,69260291,69260467,+" ; protein_id "ENSP00000336729.4" ; tag basic appris_principal_1 CCDS ; transcript_id "GALNT16--RAD51B^ENST00000337827.8" ; transcript_name "GALNT16-201" ; transcript_support_level 1 ; transcript_type protein_coding
GALNT16--RAD51B HAVANA mRNA 1688 25270 . + . FI_gene_label "GALNT16^ENSG00000100626.17" ; ID "GALNT16--RAD51B^ENST00000337827.8" ; Parent "GALNT16--RAD51B^GALNT16^ENSG00000100626.17" ; ccdsid "CCDS32107.1" ; exon_id "ENSE00000807826.6" ; exon_number 1 ; gene_id "GALNT16--RAD51B^GALNT16^ENSG00000100626.17" ; gene_name GALNT16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171231.6" ; havana_transcript "OTTHUMT00000412434.2" ; hgnc_id "HGNC:23233" ; level 2 ; orig_coord_info "chr14,69260291,69260467,+" ; protein_id "ENSP00000336729.4" ; tag basic appris_principal_1 CCDS ; transcript_id "GALNT16--RAD51B^ENST00000337827.8" ; transcript_name "GALNT16-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GALNT16--RAD51B ENSEMBL gene 28304 39030 . + . FI_gene_label "RAD51B^ENSG00000182185.18" ; ID "GALNT16--RAD51B^RAD51B^ENSG00000182185.18" ; exon_id "ENSE00001518458.1" ; exon_number 2 ; gene_id "GALNT16--RAD51B^RAD51B^ENSG00000182185.18" ; gene_name RAD51B ; gene_type protein_coding ; havana_gene "OTTHUMG00000157530.6" ; hgnc_id "HGNC:9822" ; level 3 ; orig_coord_info "chr14,67823544,67823627,+" ; protein_id "ENSP00000375101.4" ; tag basic ; transcript_id "GALNT16--RAD51B^ENST00000390683.7" ; transcript_name "RAD51B-201" ; transcript_support_level 1 ; transcript_type protein_coding
GALNT16--RAD51B ENSEMBL mRNA 28304 39030 . + . FI_gene_label "RAD51B^ENSG00000182185.18" ; ID "GALNT16--RAD51B^ENST00000390683.7" ; Parent "GALNT16--RAD51B^RAD51B^ENSG00000182185.18" ; exon_id "ENSE00001518458.1" ; exon_number 2 ; gene_id "GALNT16--RAD51B^RAD51B^ENSG00000182185.18" ; gene_name RAD51B ; gene_type protein_coding ; havana_gene "OTTHUMG00000157530.6" ; hgnc_id "HGNC:9822" ; level 3 ; orig_coord_info "chr14,67823544,67823627,+" ; protein_id "ENSP00000375101.4" ; tag basic ; transcript_id "GALNT16--RAD51B^ENST00000390683.7" ; transcript_name "RAD51B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GNB1--NADK HAVANA gene 24030 36418 . + . FI_gene_label "NADK^ENSG00000008130.15" ; ID "GNB1--NADK^NADK^ENSG00000008130.15" ; ccdsid "CCDS30565.1" ; exon_id "ENSE00003541571.1" ; exon_number 2 ; gene_id "GNB1--NADK^NADK^ENSG00000008130.15" ; gene_name NADK ; gene_type protein_coding ; havana_gene "OTTHUMG00000000942.6" ; havana_transcript "OTTHUMT00000002769.1" ; hgnc_id "HGNC:29831" ; level 2 ; orig_coord_info "chr1,1765228,1765406,-" ; protein_id "ENSP00000341679.5" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNB1--NADK^ENST00000341426.9" ; transcript_name "NADK-201" ; transcript_support_level 2 ; transcript_type protein_coding
GNB1--NADK HAVANA mRNA 24030 36418 . + . FI_gene_label "NADK^ENSG00000008130.15" ; ID "GNB1--NADK^ENST00000341426.9" ; Parent "GNB1--NADK^NADK^ENSG00000008130.15" ; ccdsid "CCDS30565.1" ; exon_id "ENSE00003541571.1" ; exon_number 2 ; gene_id "GNB1--NADK^NADK^ENSG00000008130.15" ; gene_name NADK ; gene_type protein_coding ; havana_gene "OTTHUMG00000000942.6" ; havana_transcript "OTTHUMT00000002769.1" ; hgnc_id "HGNC:29831" ; level 2 ; orig_coord_info "chr1,1765228,1765406,-" ; protein_id "ENSP00000341679.5" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNB1--NADK^ENST00000341426.9" ; transcript_name "NADK-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
GNB1--NADK HAVANA gene 1031 19041 . + . FI_gene_label "GNB1^ENSG00000078369.18" ; ID "GNB1--NADK^GNB1^ENSG00000078369.18" ; ccdsid "CCDS34.1" ; exon_id "ENSE00003268669.1" ; exon_number 3 ; gene_id "GNB1--NADK^GNB1^ENSG00000078369.18" ; gene_name GNB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000940.9" ; havana_transcript "OTTHUMT00000002762.5" ; hgnc_id "HGNC:4396" ; level 2 ; orig_coord_info "chr1,1825397,1825453,-" ; protein_id "ENSP00000367872.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNB1--NADK^ENST00000378609.9" ; transcript_name "GNB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GNB1--NADK HAVANA mRNA 1031 19041 . + . FI_gene_label "GNB1^ENSG00000078369.18" ; ID "GNB1--NADK^ENST00000378609.9" ; Parent "GNB1--NADK^GNB1^ENSG00000078369.18" ; ccdsid "CCDS34.1" ; exon_id "ENSE00003268669.1" ; exon_number 3 ; gene_id "GNB1--NADK^GNB1^ENSG00000078369.18" ; gene_name GNB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000940.9" ; havana_transcript "OTTHUMT00000002762.5" ; hgnc_id "HGNC:4396" ; level 2 ; orig_coord_info "chr1,1825397,1825453,-" ; protein_id "ENSP00000367872.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GNB1--NADK^ENST00000378609.9" ; transcript_name "GNB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRB10--AC079801.1 HAVANA gene 1001 37637 . + . FI_gene_label "GRB10^ENSG00000106070.20" ; ID "GRB10--AC079801.1^GRB10^ENSG00000106070.20" ; ccdsid "CCDS43583.1" ; exon_id "ENSE00003590205.1" ; exon_number 4 ; gene_id "GRB10--AC079801.1^GRB10^ENSG00000106070.20" ; gene_name GRB10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150622.22" ; havana_transcript "OTTHUMT00000319161.2" ; hgnc_id "HGNC:4564" ; level 2 ; orig_coord_info "chr7,50674436,50674623,-" ; protein_id "ENSP00000338543.3" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "GRB10--AC079801.1^ENST00000335866.7" ; transcript_name "GRB10-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRB10--AC079801.1 HAVANA mRNA 1001 37637 . + . FI_gene_label "GRB10^ENSG00000106070.20" ; ID "GRB10--AC079801.1^ENST00000335866.7" ; Parent "GRB10--AC079801.1^GRB10^ENSG00000106070.20" ; ccdsid "CCDS43583.1" ; exon_id "ENSE00003590205.1" ; exon_number 4 ; gene_id "GRB10--AC079801.1^GRB10^ENSG00000106070.20" ; gene_name GRB10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150622.22" ; havana_transcript "OTTHUMT00000319161.2" ; hgnc_id "HGNC:4564" ; level 2 ; orig_coord_info "chr7,50674436,50674623,-" ; protein_id "ENSP00000338543.3" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "GRB10--AC079801.1^ENST00000335866.7" ; transcript_name "GRB10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GRB10--LINC01670 HAVANA gene 1001 37637 . + . FI_gene_label "GRB10^ENSG00000106070.20" ; ID "GRB10--LINC01670^GRB10^ENSG00000106070.20" ; ccdsid "CCDS43583.1" ; exon_id "ENSE00003590205.1" ; exon_number 4 ; gene_id "GRB10--LINC01670^GRB10^ENSG00000106070.20" ; gene_name GRB10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150622.22" ; havana_transcript "OTTHUMT00000319161.2" ; hgnc_id "HGNC:4564" ; level 2 ; orig_coord_info "chr7,50674436,50674623,-" ; protein_id "ENSP00000338543.3" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "GRB10--LINC01670^ENST00000335866.7" ; transcript_name "GRB10-201" ; transcript_support_level 1 ; transcript_type protein_coding
GRB10--LINC01670 HAVANA mRNA 1001 37637 . + . FI_gene_label "GRB10^ENSG00000106070.20" ; ID "GRB10--LINC01670^ENST00000335866.7" ; Parent "GRB10--LINC01670^GRB10^ENSG00000106070.20" ; ccdsid "CCDS43583.1" ; exon_id "ENSE00003590205.1" ; exon_number 4 ; gene_id "GRB10--LINC01670^GRB10^ENSG00000106070.20" ; gene_name GRB10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150622.22" ; havana_transcript "OTTHUMT00000319161.2" ; hgnc_id "HGNC:4564" ; level 2 ; orig_coord_info "chr7,50674436,50674623,-" ; protein_id "ENSP00000338543.3" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "GRB10--LINC01670^ENST00000335866.7" ; transcript_name "GRB10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GTF2H2C--AC010267.1 HAVANA gene 1001 20005 . + . FI_gene_label "GTF2H2C^ENSG00000183474.16" ; ID "GTF2H2C--AC010267.1^GTF2H2C^ENSG00000183474.16" ; ccdsid "CCDS43325.1" ; exon_id "ENSE00003655954.1" ; exon_number 3 ; gene_id "GTF2H2C--AC010267.1^GTF2H2C^ENSG00000183474.16" ; gene_name GTF2H2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000162365.6" ; havana_transcript "OTTHUMT00000368639.1" ; hgnc_id "HGNC:31394" ; level 2 ; orig_coord_info "chr5,69565133,69565188,+" ; protein_id "ENSP00000370105.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2H2C--AC010267.1^ENST00000380729.8" ; transcript_name "GTF2H2C-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2H2C--AC010267.1 HAVANA mRNA 1001 20005 . + . FI_gene_label "GTF2H2C^ENSG00000183474.16" ; ID "GTF2H2C--AC010267.1^ENST00000380729.8" ; Parent "GTF2H2C--AC010267.1^GTF2H2C^ENSG00000183474.16" ; ccdsid "CCDS43325.1" ; exon_id "ENSE00003655954.1" ; exon_number 3 ; gene_id "GTF2H2C--AC010267.1^GTF2H2C^ENSG00000183474.16" ; gene_name GTF2H2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000162365.6" ; havana_transcript "OTTHUMT00000368639.1" ; hgnc_id "HGNC:31394" ; level 2 ; orig_coord_info "chr5,69565133,69565188,+" ; protein_id "ENSP00000370105.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2H2C--AC010267.1^ENST00000380729.8" ; transcript_name "GTF2H2C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GTF2H2C--AC093534.1 HAVANA gene 1001 20005 . + . FI_gene_label "GTF2H2C^ENSG00000183474.16" ; ID "GTF2H2C--AC093534.1^GTF2H2C^ENSG00000183474.16" ; ccdsid "CCDS43325.1" ; exon_id "ENSE00003655954.1" ; exon_number 3 ; gene_id "GTF2H2C--AC093534.1^GTF2H2C^ENSG00000183474.16" ; gene_name GTF2H2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000162365.6" ; havana_transcript "OTTHUMT00000368639.1" ; hgnc_id "HGNC:31394" ; level 2 ; orig_coord_info "chr5,69565133,69565188,+" ; protein_id "ENSP00000370105.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2H2C--AC093534.1^ENST00000380729.8" ; transcript_name "GTF2H2C-201" ; transcript_support_level 1 ; transcript_type protein_coding
GTF2H2C--AC093534.1 HAVANA mRNA 1001 20005 . + . FI_gene_label "GTF2H2C^ENSG00000183474.16" ; ID "GTF2H2C--AC093534.1^ENST00000380729.8" ; Parent "GTF2H2C--AC093534.1^GTF2H2C^ENSG00000183474.16" ; ccdsid "CCDS43325.1" ; exon_id "ENSE00003655954.1" ; exon_number 3 ; gene_id "GTF2H2C--AC093534.1^GTF2H2C^ENSG00000183474.16" ; gene_name GTF2H2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000162365.6" ; havana_transcript "OTTHUMT00000368639.1" ; hgnc_id "HGNC:31394" ; level 2 ; orig_coord_info "chr5,69565133,69565188,+" ; protein_id "ENSP00000370105.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "GTF2H2C--AC093534.1^ENST00000380729.8" ; transcript_name "GTF2H2C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IPO4--TGM1 HAVANA gene 13907 23182 . + . FI_gene_label "TGM1^ENSG00000092295.12" ; ID "IPO4--TGM1^TGM1^ENSG00000092295.12" ; ccdsid "CCDS9622.1" ; exon_id "ENSE00000889431.3" ; exon_number 2 ; gene_id "IPO4--TGM1^TGM1^ENSG00000092295.12" ; gene_name TGM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000029329.9" ; havana_transcript "OTTHUMT00000073160.7" ; hgnc_id "HGNC:11777" ; level 2 ; orig_coord_info "chr14,24262034,24262352,-" ; protein_id "ENSP00000206765.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IPO4--TGM1^ENST00000206765.11" ; transcript_name "TGM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
IPO4--TGM1 HAVANA mRNA 13907 23182 . + . FI_gene_label "TGM1^ENSG00000092295.12" ; ID "IPO4--TGM1^ENST00000206765.11" ; Parent "IPO4--TGM1^TGM1^ENSG00000092295.12" ; ccdsid "CCDS9622.1" ; exon_id "ENSE00000889431.3" ; exon_number 2 ; gene_id "IPO4--TGM1^TGM1^ENSG00000092295.12" ; gene_name TGM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000029329.9" ; havana_transcript "OTTHUMT00000073160.7" ; hgnc_id "HGNC:11777" ; level 2 ; orig_coord_info "chr14,24262034,24262352,-" ; protein_id "ENSP00000206765.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IPO4--TGM1^ENST00000206765.11" ; transcript_name "TGM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IPO4--TGM1 HAVANA gene 1054 9651 . + . FI_gene_label "IPO4^ENSG00000196497.17" ; ID "IPO4--TGM1^IPO4^ENSG00000196497.17" ; ccdsid "CCDS9616.1" ; exon_id "ENSE00001508611.4" ; exon_number 1 ; gene_id "IPO4--TGM1^IPO4^ENSG00000196497.17" ; gene_name IPO4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000028801.7" ; havana_transcript "OTTHUMT00000071931.5" ; hgnc_id "HGNC:19426" ; level 2 ; orig_coord_info "chr14,24188719,24188787,-" ; protein_id "ENSP00000346453.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IPO4--TGM1^ENST00000354464.11" ; transcript_name "IPO4-201" ; transcript_support_level 1 ; transcript_type protein_coding
IPO4--TGM1 HAVANA mRNA 1054 9651 . + . FI_gene_label "IPO4^ENSG00000196497.17" ; ID "IPO4--TGM1^ENST00000354464.11" ; Parent "IPO4--TGM1^IPO4^ENSG00000196497.17" ; ccdsid "CCDS9616.1" ; exon_id "ENSE00001508611.4" ; exon_number 1 ; gene_id "IPO4--TGM1^IPO4^ENSG00000196497.17" ; gene_name IPO4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000028801.7" ; havana_transcript "OTTHUMT00000071931.5" ; hgnc_id "HGNC:19426" ; level 2 ; orig_coord_info "chr14,24188719,24188787,-" ; protein_id "ENSP00000346453.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IPO4--TGM1^ENST00000354464.11" ; transcript_name "IPO4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM5C--PCAT1 HAVANA gene 1225 2797 . + . FI_gene_label "KDM5C^ENSG00000126012.12" ; ID "KDM5C--PCAT1^KDM5C^ENSG00000126012.12" ; exon_id "ENSE00001682058.1" ; exon_number 1 ; gene_id "KDM5C--PCAT1^KDM5C^ENSG00000126012.12" ; gene_name KDM5C ; gene_type protein_coding ; havana_gene "OTTHUMG00000021606.2" ; havana_transcript "OTTHUMT00000318613.1" ; hgnc_id "HGNC:11114" ; level 2 ; orig_coord_info "chrX,53224740,53224889,-" ; protein_id "ENSP00000344004.6" ; transcript_id "KDM5C--PCAT1^ENST00000349663.6" ; transcript_name "KDM5C-201" ; transcript_support_level 4 ; transcript_type nonsense_mediated_decay
KDM5C--PCAT1 HAVANA mRNA 1225 2797 . + . FI_gene_label "KDM5C^ENSG00000126012.12" ; ID "KDM5C--PCAT1^ENST00000349663.6" ; Parent "KDM5C--PCAT1^KDM5C^ENSG00000126012.12" ; exon_id "ENSE00001682058.1" ; exon_number 1 ; gene_id "KDM5C--PCAT1^KDM5C^ENSG00000126012.12" ; gene_name KDM5C ; gene_type protein_coding ; havana_gene "OTTHUMG00000021606.2" ; havana_transcript "OTTHUMT00000318613.1" ; hgnc_id "HGNC:11114" ; level 2 ; orig_coord_info "chrX,53224740,53224889,-" ; protein_id "ENSP00000344004.6" ; transcript_id "KDM5C--PCAT1^ENST00000349663.6" ; transcript_name "KDM5C-201" ; transcript_support_level 4 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
KIAA0232--WFS1 HAVANA gene 23314 34374 . + . FI_gene_label "WFS1^ENSG00000109501.14" ; ID "KIAA0232--WFS1^WFS1^ENSG00000109501.14" ; ccdsid "CCDS3386.1" ; exon_id "ENSE00003467547.1" ; exon_number 2 ; gene_id "KIAA0232--WFS1^WFS1^ENSG00000109501.14" ; gene_name WFS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090431.5" ; havana_transcript "OTTHUMT00000206863.1" ; hgnc_id "HGNC:12762" ; level 2 ; orig_coord_info "chr4,6277456,6277687,+" ; protein_id "ENSP00000226760.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "KIAA0232--WFS1^ENST00000226760.5" ; transcript_name "WFS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIAA0232--WFS1 HAVANA mRNA 23314 34374 . + . FI_gene_label "WFS1^ENSG00000109501.14" ; ID "KIAA0232--WFS1^ENST00000226760.5" ; Parent "KIAA0232--WFS1^WFS1^ENSG00000109501.14" ; ccdsid "CCDS3386.1" ; exon_id "ENSE00003467547.1" ; exon_number 2 ; gene_id "KIAA0232--WFS1^WFS1^ENSG00000109501.14" ; gene_name WFS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090431.5" ; havana_transcript "OTTHUMT00000206863.1" ; hgnc_id "HGNC:12762" ; level 2 ; orig_coord_info "chr4,6277456,6277687,+" ; protein_id "ENSP00000226760.1" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "KIAA0232--WFS1^ENST00000226760.5" ; transcript_name "WFS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KIAA0232--WFS1 HAVANA gene 2353 20306 . + . FI_gene_label "KIAA0232^ENSG00000170871.12" ; ID "KIAA0232--WFS1^KIAA0232^ENSG00000170871.12" ; ccdsid "CCDS43209.1" ; exon_id "ENSE00003654846.1" ; exon_number 3 ; gene_id "KIAA0232--WFS1^KIAA0232^ENSG00000170871.12" ; gene_name KIAA0232 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160072.3" ; havana_transcript "OTTHUMT00000359102.3" ; hgnc_id "HGNC:28992" ; level 2 ; orig_coord_info "chr4,6824454,6824684,+" ; protein_id "ENSP00000303928.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIAA0232--WFS1^ENST00000307659.6" ; transcript_name "KIAA0232-201" ; transcript_support_level 1 ; transcript_type protein_coding
KIAA0232--WFS1 HAVANA mRNA 2353 20306 . + . FI_gene_label "KIAA0232^ENSG00000170871.12" ; ID "KIAA0232--WFS1^ENST00000307659.6" ; Parent "KIAA0232--WFS1^KIAA0232^ENSG00000170871.12" ; ccdsid "CCDS43209.1" ; exon_id "ENSE00003654846.1" ; exon_number 3 ; gene_id "KIAA0232--WFS1^KIAA0232^ENSG00000170871.12" ; gene_name KIAA0232 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160072.3" ; havana_transcript "OTTHUMT00000359102.3" ; hgnc_id "HGNC:28992" ; level 2 ; orig_coord_info "chr4,6824454,6824684,+" ; protein_id "ENSP00000303928.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KIAA0232--WFS1^ENST00000307659.6" ; transcript_name "KIAA0232-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLF11--AC009315.1 HAVANA gene 1702 9429 . + . FI_gene_label "KLF11^ENSG00000172059.11" ; ID "KLF11--AC009315.1^KLF11^ENSG00000172059.11" ; ccdsid "CCDS1668.1" ; exon_id "ENSE00001265488.4" ; exon_number 1 ; gene_id "KLF11--AC009315.1^KLF11^ENSG00000172059.11" ; gene_name KLF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000119004.6" ; havana_transcript "OTTHUMT00000239202.4" ; hgnc_id "HGNC:11811" ; level 2 ; orig_coord_info "chr2,10043717,10043758,+" ; protein_id "ENSP00000307023.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KLF11--AC009315.1^ENST00000305883.6" ; transcript_name "KLF11-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLF11--AC009315.1 HAVANA mRNA 1702 9429 . + . FI_gene_label "KLF11^ENSG00000172059.11" ; ID "KLF11--AC009315.1^ENST00000305883.6" ; Parent "KLF11--AC009315.1^KLF11^ENSG00000172059.11" ; ccdsid "CCDS1668.1" ; exon_id "ENSE00001265488.4" ; exon_number 1 ; gene_id "KLF11--AC009315.1^KLF11^ENSG00000172059.11" ; gene_name KLF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000119004.6" ; havana_transcript "OTTHUMT00000239202.4" ; hgnc_id "HGNC:11811" ; level 2 ; orig_coord_info "chr2,10043717,10043758,+" ; protein_id "ENSP00000307023.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KLF11--AC009315.1^ENST00000305883.6" ; transcript_name "KLF11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLF11--ZNF804A HAVANA gene 12430 19956 . + . FI_gene_label "ZNF804A^ENSG00000170396.9" ; ID "KLF11--ZNF804A^ZNF804A^ENSG00000170396.9" ; ccdsid "CCDS2291.1" ; exon_id "ENSE00001385904.4" ; exon_number 1 ; gene_id "KLF11--ZNF804A^ZNF804A^ENSG00000170396.9" ; gene_name ZNF804A ; gene_type protein_coding ; havana_gene "OTTHUMG00000132625.2" ; havana_transcript "OTTHUMT00000255871.2" ; hgnc_id "HGNC:21711" ; level 2 ; orig_coord_info "chr2,184598960,184599070,+" ; protein_id "ENSP00000303252.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLF11--ZNF804A^ENST00000302277.7" ; transcript_name "ZNF804A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLF11--ZNF804A HAVANA mRNA 12430 19956 . + . FI_gene_label "ZNF804A^ENSG00000170396.9" ; ID "KLF11--ZNF804A^ENST00000302277.7" ; Parent "KLF11--ZNF804A^ZNF804A^ENSG00000170396.9" ; ccdsid "CCDS2291.1" ; exon_id "ENSE00001385904.4" ; exon_number 1 ; gene_id "KLF11--ZNF804A^ZNF804A^ENSG00000170396.9" ; gene_name ZNF804A ; gene_type protein_coding ; havana_gene "OTTHUMG00000132625.2" ; havana_transcript "OTTHUMT00000255871.2" ; hgnc_id "HGNC:21711" ; level 2 ; orig_coord_info "chr2,184598960,184599070,+" ; protein_id "ENSP00000303252.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLF11--ZNF804A^ENST00000302277.7" ; transcript_name "ZNF804A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLF11--ZNF804A HAVANA gene 1702 9429 . + . FI_gene_label "KLF11^ENSG00000172059.11" ; ID "KLF11--ZNF804A^KLF11^ENSG00000172059.11" ; ccdsid "CCDS1668.1" ; exon_id "ENSE00001265488.4" ; exon_number 1 ; gene_id "KLF11--ZNF804A^KLF11^ENSG00000172059.11" ; gene_name KLF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000119004.6" ; havana_transcript "OTTHUMT00000239202.4" ; hgnc_id "HGNC:11811" ; level 2 ; orig_coord_info "chr2,10043717,10043758,+" ; protein_id "ENSP00000307023.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KLF11--ZNF804A^ENST00000305883.6" ; transcript_name "KLF11-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLF11--ZNF804A HAVANA mRNA 1702 9429 . + . FI_gene_label "KLF11^ENSG00000172059.11" ; ID "KLF11--ZNF804A^ENST00000305883.6" ; Parent "KLF11--ZNF804A^KLF11^ENSG00000172059.11" ; ccdsid "CCDS1668.1" ; exon_id "ENSE00001265488.4" ; exon_number 1 ; gene_id "KLF11--ZNF804A^KLF11^ENSG00000172059.11" ; gene_name KLF11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000119004.6" ; havana_transcript "OTTHUMT00000239202.4" ; hgnc_id "HGNC:11811" ; level 2 ; orig_coord_info "chr2,10043717,10043758,+" ; protein_id "ENSP00000307023.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KLF11--ZNF804A^ENST00000305883.6" ; transcript_name "KLF11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LDHA--AP001102.1 HAVANA gene 1027 12740 . + . FI_gene_label "LDHA^ENSG00000134333.14" ; ID "LDHA--AP001102.1^LDHA^ENSG00000134333.14" ; ccdsid "CCDS53611.1" ; exon_id "ENSE00003598935.1" ; exon_number 2 ; gene_id "LDHA--AP001102.1^LDHA^ENSG00000134333.14" ; gene_name LDHA ; gene_type protein_coding ; havana_gene "OTTHUMG00000167721.4" ; havana_transcript "OTTHUMT00000258174.2" ; hgnc_id "HGNC:6535" ; level 2 ; orig_coord_info "chr11,18396843,18396968,+" ; protein_id "ENSP00000227157.4" ; tag basic CCDS ; transcript_id "LDHA--AP001102.1^ENST00000227157.8" ; transcript_name "LDHA-201" ; transcript_support_level 3 ; transcript_type protein_coding
LDHA--AP001102.1 HAVANA mRNA 1027 12740 . + . FI_gene_label "LDHA^ENSG00000134333.14" ; ID "LDHA--AP001102.1^ENST00000227157.8" ; Parent "LDHA--AP001102.1^LDHA^ENSG00000134333.14" ; ccdsid "CCDS53611.1" ; exon_id "ENSE00003598935.1" ; exon_number 2 ; gene_id "LDHA--AP001102.1^LDHA^ENSG00000134333.14" ; gene_name LDHA ; gene_type protein_coding ; havana_gene "OTTHUMG00000167721.4" ; havana_transcript "OTTHUMT00000258174.2" ; hgnc_id "HGNC:6535" ; level 2 ; orig_coord_info "chr11,18396843,18396968,+" ; protein_id "ENSP00000227157.4" ; tag basic CCDS ; transcript_id "LDHA--AP001102.1^ENST00000227157.8" ; transcript_name "LDHA-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
LDHA--TMEM135 HAVANA gene 1027 12740 . + . FI_gene_label "LDHA^ENSG00000134333.14" ; ID "LDHA--TMEM135^LDHA^ENSG00000134333.14" ; ccdsid "CCDS53611.1" ; exon_id "ENSE00003598935.1" ; exon_number 2 ; gene_id "LDHA--TMEM135^LDHA^ENSG00000134333.14" ; gene_name LDHA ; gene_type protein_coding ; havana_gene "OTTHUMG00000167721.4" ; havana_transcript "OTTHUMT00000258174.2" ; hgnc_id "HGNC:6535" ; level 2 ; orig_coord_info "chr11,18396843,18396968,+" ; protein_id "ENSP00000227157.4" ; tag basic CCDS ; transcript_id "LDHA--TMEM135^ENST00000227157.8" ; transcript_name "LDHA-201" ; transcript_support_level 3 ; transcript_type protein_coding
LDHA--TMEM135 HAVANA mRNA 1027 12740 . + . FI_gene_label "LDHA^ENSG00000134333.14" ; ID "LDHA--TMEM135^ENST00000227157.8" ; Parent "LDHA--TMEM135^LDHA^ENSG00000134333.14" ; ccdsid "CCDS53611.1" ; exon_id "ENSE00003598935.1" ; exon_number 2 ; gene_id "LDHA--TMEM135^LDHA^ENSG00000134333.14" ; gene_name LDHA ; gene_type protein_coding ; havana_gene "OTTHUMG00000167721.4" ; havana_transcript "OTTHUMT00000258174.2" ; hgnc_id "HGNC:6535" ; level 2 ; orig_coord_info "chr11,18396843,18396968,+" ; protein_id "ENSP00000227157.4" ; tag basic CCDS ; transcript_id "LDHA--TMEM135^ENST00000227157.8" ; transcript_name "LDHA-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
LDHA--TMEM135 HAVANA gene 16038 40856 . + . FI_gene_label "TMEM135^ENSG00000166575.17" ; ID "LDHA--TMEM135^TMEM135^ENSG00000166575.17" ; ccdsid "CCDS8280.1" ; exon_id "ENSE00002146331.2" ; exon_number 1 ; gene_id "LDHA--TMEM135^TMEM135^ENSG00000166575.17" ; gene_name TMEM135 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167248.4" ; havana_transcript "OTTHUMT00000393875.2" ; hgnc_id "HGNC:26167" ; level 2 ; orig_coord_info "chr11,87038046,87038186,+" ; protein_id "ENSP00000306344.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LDHA--TMEM135^ENST00000305494.6" ; transcript_name "TMEM135-201" ; transcript_support_level 1 ; transcript_type protein_coding
LDHA--TMEM135 HAVANA mRNA 16038 40856 . + . FI_gene_label "TMEM135^ENSG00000166575.17" ; ID "LDHA--TMEM135^ENST00000305494.6" ; Parent "LDHA--TMEM135^TMEM135^ENSG00000166575.17" ; ccdsid "CCDS8280.1" ; exon_id "ENSE00002146331.2" ; exon_number 1 ; gene_id "LDHA--TMEM135^TMEM135^ENSG00000166575.17" ; gene_name TMEM135 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167248.4" ; havana_transcript "OTTHUMT00000393875.2" ; hgnc_id "HGNC:26167" ; level 2 ; orig_coord_info "chr11,87038046,87038186,+" ; protein_id "ENSP00000306344.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LDHA--TMEM135^ENST00000305494.6" ; transcript_name "TMEM135-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LHFPL5--CLPSL1 HAVANA gene 3397 10913 . + . FI_gene_label "LHFPL5^ENSG00000197753.11" ; ID "LHFPL5--CLPSL1^LHFPL5^ENSG00000197753.11" ; ccdsid "CCDS4812.1" ; exon_id "ENSE00003831190.2" ; exon_number 1 ; gene_id "LHFPL5--CLPSL1^LHFPL5^ENSG00000197753.11" ; gene_name LHFPL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014584.6" ; havana_transcript "OTTHUMT00000040323.4" ; hgnc_id "HGNC:21253" ; level 2 ; orig_coord_info "chr6,35805671,35806082,+" ; protein_id "ENSP00000353346.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LHFPL5--CLPSL1^ENST00000360215.3" ; transcript_name "LHFPL5-201" ; transcript_support_level 1 ; transcript_type protein_coding
LHFPL5--CLPSL1 HAVANA mRNA 3397 10913 . + . FI_gene_label "LHFPL5^ENSG00000197753.11" ; ID "LHFPL5--CLPSL1^ENST00000360215.3" ; Parent "LHFPL5--CLPSL1^LHFPL5^ENSG00000197753.11" ; ccdsid "CCDS4812.1" ; exon_id "ENSE00003831190.2" ; exon_number 1 ; gene_id "LHFPL5--CLPSL1^LHFPL5^ENSG00000197753.11" ; gene_name LHFPL5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014584.6" ; havana_transcript "OTTHUMT00000040323.4" ; hgnc_id "HGNC:21253" ; level 2 ; orig_coord_info "chr6,35805671,35806082,+" ; protein_id "ENSP00000353346.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LHFPL5--CLPSL1^ENST00000360215.3" ; transcript_name "LHFPL5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LHFPL5--CLPSL1 HAVANA gene 20636 22979 . + . FI_gene_label "CLPSL1^ENSG00000204140.10" ; ID "LHFPL5--CLPSL1^CLPSL1^ENSG00000204140.10" ; ccdsid "CCDS43456.1" ; exon_id "ENSE00001569343.4" ; exon_number 1 ; gene_id "LHFPL5--CLPSL1^CLPSL1^ENSG00000204140.10" ; gene_name CLPSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014582.3" ; havana_transcript "OTTHUMT00000040317.3" ; hgnc_id "HGNC:21251" ; level 2 ; orig_coord_info "chr6,35781111,35781209,+" ; protein_id "ENSP00000362968.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LHFPL5--CLPSL1^ENST00000373861.6" ; transcript_name "CLPSL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LHFPL5--CLPSL1 HAVANA mRNA 20636 22979 . + . FI_gene_label "CLPSL1^ENSG00000204140.10" ; ID "LHFPL5--CLPSL1^ENST00000373861.6" ; Parent "LHFPL5--CLPSL1^CLPSL1^ENSG00000204140.10" ; ccdsid "CCDS43456.1" ; exon_id "ENSE00001569343.4" ; exon_number 1 ; gene_id "LHFPL5--CLPSL1^CLPSL1^ENSG00000204140.10" ; gene_name CLPSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014582.3" ; havana_transcript "OTTHUMT00000040317.3" ; hgnc_id "HGNC:21251" ; level 2 ; orig_coord_info "chr6,35781111,35781209,+" ; protein_id "ENSP00000362968.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LHFPL5--CLPSL1^ENST00000373861.6" ; transcript_name "CLPSL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRRC24--TYMS HAVANA gene 7811 16767 . + . FI_gene_label "TYMS^ENSG00000176890.16" ; ID "LRRC24--TYMS^TYMS^ENSG00000176890.16" ; ccdsid "CCDS86658.1" ; exon_id "ENSE00001225766.5" ; exon_number 1 ; gene_id "LRRC24--TYMS^TYMS^ENSG00000176890.16" ; gene_name TYMS ; gene_type protein_coding ; havana_gene "OTTHUMG00000131473.7" ; havana_transcript "OTTHUMT00000441157.2" ; hgnc_id "HGNC:12441" ; level 1 ; orig_coord_info "chr18,657743,657947,+" ; protein_id "ENSP00000314727.7" ; tag basic exp_conf CCDS ; transcript_id "LRRC24--TYMS^ENST00000323224.7" ; transcript_name "TYMS-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC24--TYMS HAVANA mRNA 7811 16767 . + . FI_gene_label "TYMS^ENSG00000176890.16" ; ID "LRRC24--TYMS^ENST00000323224.7" ; Parent "LRRC24--TYMS^TYMS^ENSG00000176890.16" ; ccdsid "CCDS86658.1" ; exon_id "ENSE00001225766.5" ; exon_number 1 ; gene_id "LRRC24--TYMS^TYMS^ENSG00000176890.16" ; gene_name TYMS ; gene_type protein_coding ; havana_gene "OTTHUMG00000131473.7" ; havana_transcript "OTTHUMT00000441157.2" ; hgnc_id "HGNC:12441" ; level 1 ; orig_coord_info "chr18,657743,657947,+" ; protein_id "ENSP00000314727.7" ; tag basic exp_conf CCDS ; transcript_id "LRRC24--TYMS^ENST00000323224.7" ; transcript_name "TYMS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRRC24--TYMS HAVANA gene 1001 4720 . + . FI_gene_label "LRRC24^ENSG00000254402.7" ; ID "LRRC24--TYMS^LRRC24^ENSG00000254402.7" ; ccdsid "CCDS34969.1" ; exon_id "ENSE00002329789.1" ; exon_number 2 ; gene_id "LRRC24--TYMS^LRRC24^ENSG00000254402.7" ; gene_name LRRC24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165180.3" ; havana_transcript "OTTHUMT00000382501.3" ; hgnc_id "HGNC:28947" ; level 2 ; orig_coord_info "chr8,144524816,144524974,-" ; protein_id "ENSP00000434849.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "LRRC24--TYMS^ENST00000529415.7" ; transcript_name "LRRC24-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRRC24--TYMS HAVANA mRNA 1001 4720 . + . FI_gene_label "LRRC24^ENSG00000254402.7" ; ID "LRRC24--TYMS^ENST00000529415.7" ; Parent "LRRC24--TYMS^LRRC24^ENSG00000254402.7" ; ccdsid "CCDS34969.1" ; exon_id "ENSE00002329789.1" ; exon_number 2 ; gene_id "LRRC24--TYMS^LRRC24^ENSG00000254402.7" ; gene_name LRRC24 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165180.3" ; havana_transcript "OTTHUMT00000382501.3" ; hgnc_id "HGNC:28947" ; level 2 ; orig_coord_info "chr8,144524816,144524974,-" ; protein_id "ENSP00000434849.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "LRRC24--TYMS^ENST00000529415.7" ; transcript_name "LRRC24-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARK4--CDRT15P9 HAVANA gene 1001 20560 . + . FI_gene_label "MARK4^ENSG00000007047.15" ; ID "MARK4--CDRT15P9^MARK4^ENSG00000007047.15" ; ccdsid "CCDS56097.1" ; exon_id "ENSE00002767256.2" ; exon_number 1 ; gene_id "MARK4--CDRT15P9^MARK4^ENSG00000007047.15" ; gene_name MARK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181769.3" ; havana_transcript "OTTHUMT00000457537.2" ; hgnc_id "HGNC:13538" ; level 2 ; orig_coord_info "chr19,45251589,45251639,+" ; protein_id "ENSP00000262891.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARK4--CDRT15P9^ENST00000262891.9" ; transcript_name "MARK4-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARK4--CDRT15P9 HAVANA mRNA 1001 20560 . + . FI_gene_label "MARK4^ENSG00000007047.15" ; ID "MARK4--CDRT15P9^ENST00000262891.9" ; Parent "MARK4--CDRT15P9^MARK4^ENSG00000007047.15" ; ccdsid "CCDS56097.1" ; exon_id "ENSE00002767256.2" ; exon_number 1 ; gene_id "MARK4--CDRT15P9^MARK4^ENSG00000007047.15" ; gene_name MARK4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000181769.3" ; havana_transcript "OTTHUMT00000457537.2" ; hgnc_id "HGNC:13538" ; level 2 ; orig_coord_info "chr19,45251589,45251639,+" ; protein_id "ENSP00000262891.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARK4--CDRT15P9^ENST00000262891.9" ; transcript_name "MARK4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MPND--AC104521.1 HAVANA gene 1001 9801 . + . FI_gene_label "MPND^ENSG00000008382.16" ; ID "MPND--AC104521.1^MPND^ENSG00000008382.16" ; ccdsid "CCDS42470.1" ; exon_id "ENSE00001490148.2" ; exon_number 1 ; gene_id "MPND--AC104521.1^MPND^ENSG00000008382.16" ; gene_name MPND ; gene_type protein_coding ; havana_gene "OTTHUMG00000181914.2" ; havana_transcript "OTTHUMT00000458292.1" ; hgnc_id "HGNC:25934" ; level 2 ; orig_coord_info "chr19,4343594,4343600,+" ; protein_id "ENSP00000262966.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "MPND--AC104521.1^ENST00000262966.12" ; transcript_name "MPND-201" ; transcript_support_level 1 ; transcript_type protein_coding
MPND--AC104521.1 HAVANA mRNA 1001 9801 . + . FI_gene_label "MPND^ENSG00000008382.16" ; ID "MPND--AC104521.1^ENST00000262966.12" ; Parent "MPND--AC104521.1^MPND^ENSG00000008382.16" ; ccdsid "CCDS42470.1" ; exon_id "ENSE00001490148.2" ; exon_number 1 ; gene_id "MPND--AC104521.1^MPND^ENSG00000008382.16" ; gene_name MPND ; gene_type protein_coding ; havana_gene "OTTHUMG00000181914.2" ; havana_transcript "OTTHUMT00000458292.1" ; hgnc_id "HGNC:25934" ; level 2 ; orig_coord_info "chr19,4343594,4343600,+" ; protein_id "ENSP00000262966.7" ; tag basic appris_alternative_2 CCDS ; transcript_id "MPND--AC104521.1^ENST00000262966.12" ; transcript_name "MPND-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPL14--COL21A1 HAVANA gene 8082 40203 . + . FI_gene_label "COL21A1^ENSG00000124749.17" ; ID "MRPL14--COL21A1^COL21A1^ENSG00000124749.17" ; ccdsid "CCDS55025.1" ; exon_id "ENSE00001252208.5" ; exon_number 2 ; gene_id "MRPL14--COL21A1^COL21A1^ENSG00000124749.17" ; gene_name COL21A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014907.6" ; havana_transcript "OTTHUMT00000041004.3" ; hgnc_id "HGNC:17025" ; level 2 ; orig_coord_info "chr6,56182531,56182618,-" ; protein_id "ENSP00000244728.5" ; tag non_canonical_conserved basic MANE_Select appris_principal_4 CCDS ; transcript_id "MRPL14--COL21A1^ENST00000244728.10" ; transcript_name "COL21A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRPL14--COL21A1 HAVANA mRNA 8082 40203 . + . FI_gene_label "COL21A1^ENSG00000124749.17" ; ID "MRPL14--COL21A1^ENST00000244728.10" ; Parent "MRPL14--COL21A1^COL21A1^ENSG00000124749.17" ; ccdsid "CCDS55025.1" ; exon_id "ENSE00001252208.5" ; exon_number 2 ; gene_id "MRPL14--COL21A1^COL21A1^ENSG00000124749.17" ; gene_name COL21A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014907.6" ; havana_transcript "OTTHUMT00000041004.3" ; hgnc_id "HGNC:17025" ; level 2 ; orig_coord_info "chr6,56182531,56182618,-" ; protein_id "ENSP00000244728.5" ; tag non_canonical_conserved basic MANE_Select appris_principal_4 CCDS ; transcript_id "MRPL14--COL21A1^ENST00000244728.10" ; transcript_name "COL21A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPL14--COL21A1 HAVANA gene 1001 3957 . + . FI_gene_label "MRPL14^ENSG00000180992.7" ; ID "MRPL14--COL21A1^MRPL14^ENSG00000180992.7" ; ccdsid "CCDS34460.1" ; exon_id "ENSE00001456711.1" ; exon_number 2 ; gene_id "MRPL14--COL21A1^MRPL14^ENSG00000180992.7" ; gene_name MRPL14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014756.3" ; havana_transcript "OTTHUMT00000040707.3" ; hgnc_id "HGNC:14279" ; level 2 ; orig_coord_info "chr6,44116541,44116611,-" ; protein_id "ENSP00000361084.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPL14--COL21A1^ENST00000372014.5" ; transcript_name "MRPL14-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRPL14--COL21A1 HAVANA mRNA 1001 3957 . + . FI_gene_label "MRPL14^ENSG00000180992.7" ; ID "MRPL14--COL21A1^ENST00000372014.5" ; Parent "MRPL14--COL21A1^MRPL14^ENSG00000180992.7" ; ccdsid "CCDS34460.1" ; exon_id "ENSE00001456711.1" ; exon_number 2 ; gene_id "MRPL14--COL21A1^MRPL14^ENSG00000180992.7" ; gene_name MRPL14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014756.3" ; havana_transcript "OTTHUMT00000040707.3" ; hgnc_id "HGNC:14279" ; level 2 ; orig_coord_info "chr6,44116541,44116611,-" ; protein_id "ENSP00000361084.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPL14--COL21A1^ENST00000372014.5" ; transcript_name "MRPL14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MSN--NAV2 HAVANA gene 25927 81159 . + . FI_gene_label "NAV2^ENSG00000166833.22" ; ID "MSN--NAV2^NAV2^ENSG00000166833.22" ; ccdsid "CCDS7850.1" ; exon_id "ENSE00003846126.1" ; exon_number 1 ; gene_id "MSN--NAV2^NAV2^ENSG00000166833.22" ; gene_name NAV2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151837.7" ; havana_transcript "OTTHUMT00000324114.1" ; hgnc_id "HGNC:15997" ; level 2 ; orig_coord_info "chr11,19713696,19713962,+" ; protein_id "ENSP00000309577.6" ; tag basic MANE_Select CCDS ; transcript_id "MSN--NAV2^ENST00000349880.9" ; transcript_name "NAV2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MSN--NAV2 HAVANA mRNA 25927 81159 . + . FI_gene_label "NAV2^ENSG00000166833.22" ; ID "MSN--NAV2^ENST00000349880.9" ; Parent "MSN--NAV2^NAV2^ENSG00000166833.22" ; ccdsid "CCDS7850.1" ; exon_id "ENSE00003846126.1" ; exon_number 1 ; gene_id "MSN--NAV2^NAV2^ENSG00000166833.22" ; gene_name NAV2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151837.7" ; havana_transcript "OTTHUMT00000324114.1" ; hgnc_id "HGNC:15997" ; level 2 ; orig_coord_info "chr11,19713696,19713962,+" ; protein_id "ENSP00000309577.6" ; tag basic MANE_Select CCDS ; transcript_id "MSN--NAV2^ENST00000349880.9" ; transcript_name "NAV2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MSN--NAV2 HAVANA gene 7878 21622 . + . FI_gene_label "MSN^ENSG00000147065.17" ; ID "MSN--NAV2^MSN^ENSG00000147065.17" ; ccdsid "CCDS14382.1" ; exon_id "ENSE00001464657.5" ; exon_number 1 ; gene_id "MSN--NAV2^MSN^ENSG00000147065.17" ; gene_name MSN ; gene_type protein_coding ; havana_gene "OTTHUMG00000021723.5" ; havana_transcript "OTTHUMT00000056981.3" ; hgnc_id "HGNC:7373" ; level 2 ; orig_coord_info "chrX,65667842,65667853,+" ; protein_id "ENSP00000353408.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSN--NAV2^ENST00000360270.7" ; transcript_name "MSN-201" ; transcript_support_level 1 ; transcript_type protein_coding
MSN--NAV2 HAVANA mRNA 7878 21622 . + . FI_gene_label "MSN^ENSG00000147065.17" ; ID "MSN--NAV2^ENST00000360270.7" ; Parent "MSN--NAV2^MSN^ENSG00000147065.17" ; ccdsid "CCDS14382.1" ; exon_id "ENSE00001464657.5" ; exon_number 1 ; gene_id "MSN--NAV2^MSN^ENSG00000147065.17" ; gene_name MSN ; gene_type protein_coding ; havana_gene "OTTHUMG00000021723.5" ; havana_transcript "OTTHUMT00000056981.3" ; hgnc_id "HGNC:7373" ; level 2 ; orig_coord_info "chrX,65667842,65667853,+" ; protein_id "ENSP00000353408.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MSN--NAV2^ENST00000360270.7" ; transcript_name "MSN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MTAP--CDKN2B-AS1 HAVANA gene 1022 14638 . + . FI_gene_label "MTAP^ENSG00000099810.21" ; ID "MTAP--CDKN2B-AS1^MTAP^ENSG00000099810.21" ; exon_id "ENSE00001547793.2" ; exon_number 1 ; gene_id "MTAP--CDKN2B-AS1^MTAP^ENSG00000099810.21" ; gene_name MTAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000019690.10" ; havana_transcript "OTTHUMT00000334287.1" ; hgnc_id "HGNC:7413" ; level 2 ; orig_coord_info "chr9,21802749,21802781,+" ; protein_id "ENSP00000393507.1" ; tag not_organism_supported ; transcript_id "MTAP--CDKN2B-AS1^ENST00000419385.5" ; transcript_name "MTAP-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
MTAP--CDKN2B-AS1 HAVANA mRNA 1022 14638 . + . FI_gene_label "MTAP^ENSG00000099810.21" ; ID "MTAP--CDKN2B-AS1^ENST00000419385.5" ; Parent "MTAP--CDKN2B-AS1^MTAP^ENSG00000099810.21" ; exon_id "ENSE00001547793.2" ; exon_number 1 ; gene_id "MTAP--CDKN2B-AS1^MTAP^ENSG00000099810.21" ; gene_name MTAP ; gene_type protein_coding ; havana_gene "OTTHUMG00000019690.10" ; havana_transcript "OTTHUMT00000334287.1" ; hgnc_id "HGNC:7413" ; level 2 ; orig_coord_info "chr9,21802749,21802781,+" ; protein_id "ENSP00000393507.1" ; tag not_organism_supported ; transcript_id "MTAP--CDKN2B-AS1^ENST00000419385.5" ; transcript_name "MTAP-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MVB12B--SERP1 HAVANA gene 29320 33818 . + . FI_gene_label "SERP1^ENSG00000120742.11" ; ID "MVB12B--SERP1^SERP1^ENSG00000120742.11" ; ccdsid "CCDS3150.1" ; exon_id "ENSE00001233110.7" ; exon_number 1 ; gene_id "MVB12B--SERP1^SERP1^ENSG00000120742.11" ; gene_name SERP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159769.4" ; havana_transcript "OTTHUMT00000504312.2" ; hgnc_id "HGNC:10759" ; level 2 ; orig_coord_info "chr3,150546052,150546135,-" ; protein_id "ENSP00000239944.2" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "MVB12B--SERP1^ENST00000239944.7" ; transcript_name "SERP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MVB12B--SERP1 HAVANA mRNA 29320 33818 . + . FI_gene_label "SERP1^ENSG00000120742.11" ; ID "MVB12B--SERP1^ENST00000239944.7" ; Parent "MVB12B--SERP1^SERP1^ENSG00000120742.11" ; ccdsid "CCDS3150.1" ; exon_id "ENSE00001233110.7" ; exon_number 1 ; gene_id "MVB12B--SERP1^SERP1^ENSG00000120742.11" ; gene_name SERP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159769.4" ; havana_transcript "OTTHUMT00000504312.2" ; hgnc_id "HGNC:10759" ; level 2 ; orig_coord_info "chr3,150546052,150546135,-" ; protein_id "ENSP00000239944.2" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "MVB12B--SERP1^ENST00000239944.7" ; transcript_name "SERP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MVB12B--SERP1 HAVANA gene 1001 19903 . + . FI_gene_label "MVB12B^ENSG00000196814.15" ; ID "MVB12B--SERP1^MVB12B^ENSG00000196814.15" ; ccdsid "CCDS35142.1" ; exon_id "ENSE00001152123.4" ; exon_number 1 ; gene_id "MVB12B--SERP1^MVB12B^ENSG00000196814.15" ; gene_name MVB12B ; gene_type protein_coding ; havana_gene "OTTHUMG00000020687.3" ; havana_transcript "OTTHUMT00000054110.2" ; hgnc_id "HGNC:23368" ; level 2 ; orig_coord_info "chr9,126326930,126327010,+" ; protein_id "ENSP00000354772.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MVB12B--SERP1^ENST00000361171.8" ; transcript_name "MVB12B-201" ; transcript_support_level 2 ; transcript_type protein_coding
MVB12B--SERP1 HAVANA mRNA 1001 19903 . + . FI_gene_label "MVB12B^ENSG00000196814.15" ; ID "MVB12B--SERP1^ENST00000361171.8" ; Parent "MVB12B--SERP1^MVB12B^ENSG00000196814.15" ; ccdsid "CCDS35142.1" ; exon_id "ENSE00001152123.4" ; exon_number 1 ; gene_id "MVB12B--SERP1^MVB12B^ENSG00000196814.15" ; gene_name MVB12B ; gene_type protein_coding ; havana_gene "OTTHUMG00000020687.3" ; havana_transcript "OTTHUMT00000054110.2" ; hgnc_id "HGNC:23368" ; level 2 ; orig_coord_info "chr9,126326930,126327010,+" ; protein_id "ENSP00000354772.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MVB12B--SERP1^ENST00000361171.8" ; transcript_name "MVB12B-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NARS2--GAB2 HAVANA gene 1011 17072 . + . FI_gene_label "NARS2^ENSG00000137513.10" ; ID "NARS2--GAB2^NARS2^ENSG00000137513.10" ; ccdsid "CCDS8261.1" ; exon_id "ENSE00001151727.6" ; exon_number 1 ; gene_id "NARS2--GAB2^NARS2^ENSG00000137513.10" ; gene_name NARS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166702.4" ; havana_transcript "OTTHUMT00000391138.3" ; hgnc_id "HGNC:26274" ; level 2 ; orig_coord_info "chr11,78574348,78574488,-" ; protein_id "ENSP00000281038.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NARS2--GAB2^ENST00000281038.10" ; transcript_name "NARS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NARS2--GAB2 HAVANA mRNA 1011 17072 . + . FI_gene_label "NARS2^ENSG00000137513.10" ; ID "NARS2--GAB2^ENST00000281038.10" ; Parent "NARS2--GAB2^NARS2^ENSG00000137513.10" ; ccdsid "CCDS8261.1" ; exon_id "ENSE00001151727.6" ; exon_number 1 ; gene_id "NARS2--GAB2^NARS2^ENSG00000137513.10" ; gene_name NARS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166702.4" ; havana_transcript "OTTHUMT00000391138.3" ; hgnc_id "HGNC:26274" ; level 2 ; orig_coord_info "chr11,78574348,78574488,-" ; protein_id "ENSP00000281038.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NARS2--GAB2^ENST00000281038.10" ; transcript_name "NARS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NARS2--GAB2 HAVANA gene 22864 39485 . + . FI_gene_label "GAB2^ENSG00000033327.13" ; ID "NARS2--GAB2^GAB2^ENSG00000033327.13" ; ccdsid "CCDS8260.1" ; exon_id "ENSE00003464974.1" ; exon_number 2 ; gene_id "NARS2--GAB2^GAB2^ENSG00000033327.13" ; gene_name GAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166673.3" ; havana_transcript "OTTHUMT00000391084.1" ; hgnc_id "HGNC:14458" ; level 2 ; orig_coord_info "chr11,78280601,78280862,-" ; protein_id "ENSP00000343959.2" ; tag basic CCDS ; transcript_id "NARS2--GAB2^ENST00000340149.6" ; transcript_name "GAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NARS2--GAB2 HAVANA mRNA 22864 39485 . + . FI_gene_label "GAB2^ENSG00000033327.13" ; ID "NARS2--GAB2^ENST00000340149.6" ; Parent "NARS2--GAB2^GAB2^ENSG00000033327.13" ; ccdsid "CCDS8260.1" ; exon_id "ENSE00003464974.1" ; exon_number 2 ; gene_id "NARS2--GAB2^GAB2^ENSG00000033327.13" ; gene_name GAB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166673.3" ; havana_transcript "OTTHUMT00000391084.1" ; hgnc_id "HGNC:14458" ; level 2 ; orig_coord_info "chr11,78280601,78280862,-" ; protein_id "ENSP00000343959.2" ; tag basic CCDS ; transcript_id "NARS2--GAB2^ENST00000340149.6" ; transcript_name "GAB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NDUFA9--CNOT2 HAVANA gene 25954 57269 . + . FI_gene_label "CNOT2^ENSG00000111596.14" ; ID "NDUFA9--CNOT2^CNOT2^ENSG00000111596.14" ; ccdsid "CCDS31857.1" ; exon_id "ENSE00003652343.1" ; exon_number 2 ; gene_id "NDUFA9--CNOT2^CNOT2^ENSG00000111596.14" ; gene_name CNOT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169481.8" ; havana_transcript "OTTHUMT00000404258.4" ; hgnc_id "HGNC:7878" ; level 2 ; orig_coord_info "chr12,70278227,70278274,+" ; protein_id "ENSP00000229195.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select CCDS ; transcript_id "NDUFA9--CNOT2^ENST00000229195.8" ; transcript_name "CNOT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NDUFA9--CNOT2 HAVANA mRNA 25954 57269 . + . FI_gene_label "CNOT2^ENSG00000111596.14" ; ID "NDUFA9--CNOT2^ENST00000229195.8" ; Parent "NDUFA9--CNOT2^CNOT2^ENSG00000111596.14" ; ccdsid "CCDS31857.1" ; exon_id "ENSE00003652343.1" ; exon_number 2 ; gene_id "NDUFA9--CNOT2^CNOT2^ENSG00000111596.14" ; gene_name CNOT2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169481.8" ; havana_transcript "OTTHUMT00000404258.4" ; hgnc_id "HGNC:7878" ; level 2 ; orig_coord_info "chr12,70278227,70278274,+" ; protein_id "ENSP00000229195.3" ; tag alternative_5_UTR RNA_Seq_supported_partial basic MANE_Select CCDS ; transcript_id "NDUFA9--CNOT2^ENST00000229195.8" ; transcript_name "CNOT2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NDUFA9--CNOT2 HAVANA gene 1020 22522 . + . FI_gene_label "NDUFA9^ENSG00000139180.11" ; ID "NDUFA9--CNOT2^NDUFA9^ENSG00000139180.11" ; ccdsid "CCDS8532.1" ; exon_id "ENSE00002204942.2" ; exon_number 1 ; gene_id "NDUFA9--CNOT2^NDUFA9^ENSG00000139180.11" ; gene_name NDUFA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168224.7" ; havana_transcript "OTTHUMT00000398900.4" ; hgnc_id "HGNC:7693" ; level 2 ; orig_coord_info "chr12,4649127,4649175,+" ; protein_id "ENSP00000266544.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NDUFA9--CNOT2^ENST00000266544.10" ; transcript_name "NDUFA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
NDUFA9--CNOT2 HAVANA mRNA 1020 22522 . + . FI_gene_label "NDUFA9^ENSG00000139180.11" ; ID "NDUFA9--CNOT2^ENST00000266544.10" ; Parent "NDUFA9--CNOT2^NDUFA9^ENSG00000139180.11" ; ccdsid "CCDS8532.1" ; exon_id "ENSE00002204942.2" ; exon_number 1 ; gene_id "NDUFA9--CNOT2^NDUFA9^ENSG00000139180.11" ; gene_name NDUFA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168224.7" ; havana_transcript "OTTHUMT00000398900.4" ; hgnc_id "HGNC:7693" ; level 2 ; orig_coord_info "chr12,4649127,4649175,+" ; protein_id "ENSP00000266544.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NDUFA9--CNOT2^ENST00000266544.10" ; transcript_name "NDUFA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NF1--ZMIZ1 HAVANA gene 78060 110492 . + . FI_gene_label "ZMIZ1^ENSG00000108175.18" ; ID "NF1--ZMIZ1^ZMIZ1^ENSG00000108175.18" ; ccdsid "CCDS7357.1" ; exon_id "ENSE00002270426.1" ; exon_number 5 ; gene_id "NF1--ZMIZ1^ZMIZ1^ENSG00000108175.18" ; gene_name ZMIZ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018560.3" ; havana_transcript "OTTHUMT00000048944.3" ; hgnc_id "HGNC:16493" ; level 2 ; orig_coord_info "chr10,79201633,79201692,+" ; protein_id "ENSP00000334474.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NF1--ZMIZ1^ENST00000334512.10" ; transcript_name "ZMIZ1-201" ; transcript_support_level 5 ; transcript_type protein_coding
NF1--ZMIZ1 HAVANA mRNA 78060 110492 . + . FI_gene_label "ZMIZ1^ENSG00000108175.18" ; ID "NF1--ZMIZ1^ENST00000334512.10" ; Parent "NF1--ZMIZ1^ZMIZ1^ENSG00000108175.18" ; ccdsid "CCDS7357.1" ; exon_id "ENSE00002270426.1" ; exon_number 5 ; gene_id "NF1--ZMIZ1^ZMIZ1^ENSG00000108175.18" ; gene_name ZMIZ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018560.3" ; havana_transcript "OTTHUMT00000048944.3" ; hgnc_id "HGNC:16493" ; level 2 ; orig_coord_info "chr10,79201633,79201692,+" ; protein_id "ENSP00000334474.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NF1--ZMIZ1^ENST00000334512.10" ; transcript_name "ZMIZ1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NF1--ZMIZ1 HAVANA gene 1001 71265 . + . FI_gene_label "NF1^ENSG00000196712.18" ; ID "NF1--ZMIZ1^NF1^ENSG00000196712.18" ; ccdsid "CCDS11264.1" ; exon_id "ENSE00003803084.1" ; exon_number 1 ; gene_id "NF1--ZMIZ1^NF1^ENSG00000196712.18" ; gene_name NF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132871.10" ; havana_transcript "OTTHUMT00000256352.1" ; hgnc_id "HGNC:7765" ; level 2 ; orig_coord_info "chr17,31095310,31095369,+" ; protein_id "ENSP00000348498.3" ; tag basic appris_principal_4 CCDS ; transcript_id "NF1--ZMIZ1^ENST00000356175.7" ; transcript_name "NF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NF1--ZMIZ1 HAVANA mRNA 1001 71265 . + . FI_gene_label "NF1^ENSG00000196712.18" ; ID "NF1--ZMIZ1^ENST00000356175.7" ; Parent "NF1--ZMIZ1^NF1^ENSG00000196712.18" ; ccdsid "CCDS11264.1" ; exon_id "ENSE00003803084.1" ; exon_number 1 ; gene_id "NF1--ZMIZ1^NF1^ENSG00000196712.18" ; gene_name NF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132871.10" ; havana_transcript "OTTHUMT00000256352.1" ; hgnc_id "HGNC:7765" ; level 2 ; orig_coord_info "chr17,31095310,31095369,+" ; protein_id "ENSP00000348498.3" ; tag basic appris_principal_4 CCDS ; transcript_id "NF1--ZMIZ1^ENST00000356175.7" ; transcript_name "NF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2NLC--SND1 HAVANA gene 14594 51189 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "NOTCH2NLC--SND1^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "NOTCH2NLC--SND1^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2NLC--SND1^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2NLC--SND1 HAVANA mRNA 14594 51189 . + . FI_gene_label "SND1^ENSG00000197157.11" ; ID "NOTCH2NLC--SND1^ENST00000354725.8" ; Parent "NOTCH2NLC--SND1^SND1^ENSG00000197157.11" ; ccdsid "CCDS34747.1" ; exon_id "ENSE00001903029.2" ; exon_number 1 ; gene_id "NOTCH2NLC--SND1^SND1^ENSG00000197157.11" ; gene_name SND1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157560.3" ; havana_transcript "OTTHUMT00000349148.2" ; hgnc_id "HGNC:30646" ; level 2 ; orig_coord_info "chr7,127652374,127652451,+" ; protein_id "ENSP00000346762.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NOTCH2NLC--SND1^ENST00000354725.8" ; transcript_name "SND1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOTCH2NLC--SND1 ENSEMBL gene 2310 11593 . + . FI_gene_label "NOTCH2NLC^ENSG00000286219.1" ; ID "NOTCH2NLC--SND1^NOTCH2NLC^ENSG00000286219.1" ; ccdsid "CCDS86015.1" ; exon_id "ENSE00003690199.1" ; exon_number 3 ; gene_id "NOTCH2NLC--SND1^NOTCH2NLC^ENSG00000286219.1" ; gene_name NOTCH2NLC ; gene_type protein_coding ; havana_gene "OTTHUMG00000193481.1" ; hgnc_id "HGNC:53924" ; level 3 ; orig_coord_info "chr1,149430978,149431015,+" ; protein_id "ENSP00000462298.1" ; tag basic appris_principal_4 CCDS ; transcript_id "NOTCH2NLC--SND1^ENST00000578189.1" ; transcript_name "NOTCH2NLC-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOTCH2NLC--SND1 ENSEMBL mRNA 2310 11593 . + . FI_gene_label "NOTCH2NLC^ENSG00000286219.1" ; ID "NOTCH2NLC--SND1^ENST00000578189.1" ; Parent "NOTCH2NLC--SND1^NOTCH2NLC^ENSG00000286219.1" ; ccdsid "CCDS86015.1" ; exon_id "ENSE00003690199.1" ; exon_number 3 ; gene_id "NOTCH2NLC--SND1^NOTCH2NLC^ENSG00000286219.1" ; gene_name NOTCH2NLC ; gene_type protein_coding ; havana_gene "OTTHUMG00000193481.1" ; hgnc_id "HGNC:53924" ; level 3 ; orig_coord_info "chr1,149430978,149431015,+" ; protein_id "ENSP00000462298.1" ; tag basic appris_principal_4 CCDS ; transcript_id "NOTCH2NLC--SND1^ENST00000578189.1" ; transcript_name "NOTCH2NLC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA10 HAVANA gene 9840 19293 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA10 HAVANA mRNA 9840 19293 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA6--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA10 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA10 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA10^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA11 HAVANA gene 9655 18460 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA11 HAVANA mRNA 9655 18460 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA6--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA11 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA11 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA11^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA12 HAVANA gene 9651 17543 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA12 HAVANA mRNA 9651 17543 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA6--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA12 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA12 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA12^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA8 HAVANA gene 12127 21307 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA8 HAVANA mRNA 12127 21307 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA6--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA8 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA8 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA8^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA9 HAVANA gene 9672 17399 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA9 HAVANA mRNA 9672 17399 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA6--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA9 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA9 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA9^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB6 HAVANA gene 9833 19432 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB6 HAVANA mRNA 9833 19432 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA6--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB6 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB6 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB6^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB7 HAVANA gene 9683 17612 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB7 HAVANA mRNA 9683 17612 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA6--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB7 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB7 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB7^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC3 HAVANA gene 9670 19856 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC3 HAVANA mRNA 9670 19856 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA6--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC3 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC3 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC3^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC4 HAVANA gene 9828 17624 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC4 HAVANA mRNA 9828 17624 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA6--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC4 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC4 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC4^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC5 HAVANA gene 9651 17676 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC5 HAVANA mRNA 9651 17676 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA6--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC5 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC5 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC5^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PDE10A--CEP43 HAVANA gene 72385 86642 . + . FI_gene_label "CEP43^ENSG00000213066.13" ; ID "PDE10A--CEP43^CEP43^ENSG00000213066.13" ; ccdsid "CCDS5297.1" ; exon_id "ENSE00001934670.1" ; exon_number 1 ; gene_id "PDE10A--CEP43^CEP43^ENSG00000213066.13" ; gene_name CEP43 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016011.4" ; havana_transcript "OTTHUMT00000043100.1" ; hgnc_id "HGNC:17012" ; level 2 ; orig_coord_info "chr6,166999413,166999514,+" ; protein_id "ENSP00000230248.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "PDE10A--CEP43^ENST00000349556.4" ; transcript_name "CEP43-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDE10A--CEP43 HAVANA mRNA 72385 86642 . + . FI_gene_label "CEP43^ENSG00000213066.13" ; ID "PDE10A--CEP43^ENST00000349556.4" ; Parent "PDE10A--CEP43^CEP43^ENSG00000213066.13" ; ccdsid "CCDS5297.1" ; exon_id "ENSE00001934670.1" ; exon_number 1 ; gene_id "PDE10A--CEP43^CEP43^ENSG00000213066.13" ; gene_name CEP43 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016011.4" ; havana_transcript "OTTHUMT00000043100.1" ; hgnc_id "HGNC:17012" ; level 2 ; orig_coord_info "chr6,166999413,166999514,+" ; protein_id "ENSP00000230248.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "PDE10A--CEP43^ENST00000349556.4" ; transcript_name "CEP43-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDE10A--CEP43 ENSEMBL gene 28782 69293 . + . FI_gene_label "PDE10A^ENSG00000112541.18" ; ID "PDE10A--CEP43^PDE10A^ENSG00000112541.18" ; ccdsid "CCDS47513.1" ; exon_id "ENSE00001442893.1" ; exon_number 1 ; gene_id "PDE10A--CEP43^PDE10A^ENSG00000112541.18" ; gene_name PDE10A ; gene_type protein_coding ; havana_gene "OTTHUMG00000015986.5" ; hgnc_id "HGNC:8772" ; level 3 ; orig_coord_info "chr6,165661947,165662013,-" ; protein_id "ENSP00000355847.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PDE10A--CEP43^ENST00000366882.6" ; transcript_name "PDE10A-201" ; transcript_support_level 5 ; transcript_type protein_coding
PDE10A--CEP43 ENSEMBL mRNA 28782 69293 . + . FI_gene_label "PDE10A^ENSG00000112541.18" ; ID "PDE10A--CEP43^ENST00000366882.6" ; Parent "PDE10A--CEP43^PDE10A^ENSG00000112541.18" ; ccdsid "CCDS47513.1" ; exon_id "ENSE00001442893.1" ; exon_number 1 ; gene_id "PDE10A--CEP43^PDE10A^ENSG00000112541.18" ; gene_name PDE10A ; gene_type protein_coding ; havana_gene "OTTHUMG00000015986.5" ; hgnc_id "HGNC:8772" ; level 3 ; orig_coord_info "chr6,165661947,165662013,-" ; protein_id "ENSP00000355847.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PDE10A--CEP43^ENST00000366882.6" ; transcript_name "PDE10A-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PEBP1--FBXW8 HAVANA gene 1001 5733 . + . FI_gene_label "PEBP1^ENSG00000089220.5" ; ID "PEBP1--FBXW8^PEBP1^ENSG00000089220.5" ; ccdsid "CCDS9187.1" ; exon_id "ENSE00000940085.7" ; exon_number 1 ; gene_id "PEBP1--FBXW8^PEBP1^ENSG00000089220.5" ; gene_name PEBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168860.2" ; havana_transcript "OTTHUMT00000401405.2" ; hgnc_id "HGNC:8630" ; level 2 ; orig_coord_info "chr12,118136210,118136344,+" ; protein_id "ENSP00000261313.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PEBP1--FBXW8^ENST00000261313.3" ; transcript_name "PEBP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PEBP1--FBXW8 HAVANA mRNA 1001 5733 . + . FI_gene_label "PEBP1^ENSG00000089220.5" ; ID "PEBP1--FBXW8^ENST00000261313.3" ; Parent "PEBP1--FBXW8^PEBP1^ENSG00000089220.5" ; ccdsid "CCDS9187.1" ; exon_id "ENSE00000940085.7" ; exon_number 1 ; gene_id "PEBP1--FBXW8^PEBP1^ENSG00000089220.5" ; gene_name PEBP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168860.2" ; havana_transcript "OTTHUMT00000401405.2" ; hgnc_id "HGNC:8630" ; level 2 ; orig_coord_info "chr12,118136210,118136344,+" ; protein_id "ENSP00000261313.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PEBP1--FBXW8^ENST00000261313.3" ; transcript_name "PEBP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PEBP1--FBXW8 HAVANA gene 10140 23428 . + . FI_gene_label "FBXW8^ENSG00000174989.13" ; ID "PEBP1--FBXW8^FBXW8^ENSG00000174989.13" ; exon_id "ENSE00003850336.1" ; exon_number 1 ; gene_id "PEBP1--FBXW8^FBXW8^ENSG00000174989.13" ; gene_name FBXW8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169329.4" ; havana_transcript "OTTHUMT00000499860.2" ; hgnc_id "HGNC:13597" ; level 2 ; orig_coord_info "chr12,116918721,116918726,+" ; protein_id "ENSP00000310686.6" ; tag CAGE_supported_TSS inferred_transcript_model basic appris_alternative_2 ; transcript_id "PEBP1--FBXW8^ENST00000309909.10" ; transcript_name "FBXW8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PEBP1--FBXW8 HAVANA mRNA 10140 23428 . + . FI_gene_label "FBXW8^ENSG00000174989.13" ; ID "PEBP1--FBXW8^ENST00000309909.10" ; Parent "PEBP1--FBXW8^FBXW8^ENSG00000174989.13" ; exon_id "ENSE00003850336.1" ; exon_number 1 ; gene_id "PEBP1--FBXW8^FBXW8^ENSG00000174989.13" ; gene_name FBXW8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169329.4" ; havana_transcript "OTTHUMT00000499860.2" ; hgnc_id "HGNC:13597" ; level 2 ; orig_coord_info "chr12,116918721,116918726,+" ; protein_id "ENSP00000310686.6" ; tag CAGE_supported_TSS inferred_transcript_model basic appris_alternative_2 ; transcript_id "PEBP1--FBXW8^ENST00000309909.10" ; transcript_name "FBXW8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PIGS--SPAG5 HAVANA gene 1267 12304 . + . FI_gene_label "PIGS^ENSG00000087111.21" ; ID "PIGS--SPAG5^PIGS^ENSG00000087111.21" ; exon_id "ENSE00003543834.1" ; exon_number 1 ; gene_id "PIGS--SPAG5^PIGS^ENSG00000087111.21" ; gene_name PIGS ; gene_type protein_coding ; havana_gene "OTTHUMG00000132604.7" ; havana_transcript "OTTHUMT00000445974.2" ; hgnc_id "HGNC:14937" ; level 2 ; orig_coord_info "chr17,28571463,28571496,-" ; protein_id "ENSP00000268758.9" ; transcript_id "PIGS--SPAG5^ENST00000268758.13" ; transcript_name "PIGS-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
PIGS--SPAG5 HAVANA mRNA 1267 12304 . + . FI_gene_label "PIGS^ENSG00000087111.21" ; ID "PIGS--SPAG5^ENST00000268758.13" ; Parent "PIGS--SPAG5^PIGS^ENSG00000087111.21" ; exon_id "ENSE00003543834.1" ; exon_number 1 ; gene_id "PIGS--SPAG5^PIGS^ENSG00000087111.21" ; gene_name PIGS ; gene_type protein_coding ; havana_gene "OTTHUMG00000132604.7" ; havana_transcript "OTTHUMT00000445974.2" ; hgnc_id "HGNC:14937" ; level 2 ; orig_coord_info "chr17,28571463,28571496,-" ; protein_id "ENSP00000268758.9" ; transcript_id "PIGS--SPAG5^ENST00000268758.13" ; transcript_name "PIGS-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
PIGS--SPAG5 HAVANA gene 15305 27206 . + . FI_gene_label "SPAG5^ENSG00000076382.17" ; ID "PIGS--SPAG5^SPAG5^ENSG00000076382.17" ; ccdsid "CCDS32594.1" ; exon_id "ENSE00001671047.3" ; exon_number 1 ; gene_id "PIGS--SPAG5^SPAG5^ENSG00000076382.17" ; gene_name SPAG5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166586.27" ; havana_transcript "OTTHUMT00000390564.3" ; hgnc_id "HGNC:13452" ; level 2 ; orig_coord_info "chr17,28598896,28598946,-" ; protein_id "ENSP00000323300.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PIGS--SPAG5^ENST00000321765.10" ; transcript_name "SPAG5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PIGS--SPAG5 HAVANA mRNA 15305 27206 . + . FI_gene_label "SPAG5^ENSG00000076382.17" ; ID "PIGS--SPAG5^ENST00000321765.10" ; Parent "PIGS--SPAG5^SPAG5^ENSG00000076382.17" ; ccdsid "CCDS32594.1" ; exon_id "ENSE00001671047.3" ; exon_number 1 ; gene_id "PIGS--SPAG5^SPAG5^ENSG00000076382.17" ; gene_name SPAG5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166586.27" ; havana_transcript "OTTHUMT00000390564.3" ; hgnc_id "HGNC:13452" ; level 2 ; orig_coord_info "chr17,28598896,28598946,-" ; protein_id "ENSP00000323300.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PIGS--SPAG5^ENST00000321765.10" ; transcript_name "SPAG5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PIP4K2B--LHX1-DT HAVANA gene 1001 6265 . + . FI_gene_label "PIP4K2B^ENSG00000276293.5" ; ID "PIP4K2B--LHX1-DT^PIP4K2B^ENSG00000276293.5" ; exon_id "ENSE00003714121.1" ; exon_number 3 ; gene_id "PIP4K2B--LHX1-DT^PIP4K2B^ENSG00000276293.5" ; gene_name PIP4K2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000188504.2" ; havana_transcript "OTTHUMT00000477463.2" ; hgnc_id "HGNC:8998" ; level 2 ; orig_coord_info "chr17,38786823,38786887,-" ; protein_id "ENSP00000477549.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PIP4K2B--LHX1-DT^ENST00000617499.1" ; transcript_name "PIP4K2B-202" ; transcript_support_level 4 ; transcript_type protein_coding
PIP4K2B--LHX1-DT HAVANA mRNA 1001 6265 . + . FI_gene_label "PIP4K2B^ENSG00000276293.5" ; ID "PIP4K2B--LHX1-DT^ENST00000617499.1" ; Parent "PIP4K2B--LHX1-DT^PIP4K2B^ENSG00000276293.5" ; exon_id "ENSE00003714121.1" ; exon_number 3 ; gene_id "PIP4K2B--LHX1-DT^PIP4K2B^ENSG00000276293.5" ; gene_name PIP4K2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000188504.2" ; havana_transcript "OTTHUMT00000477463.2" ; hgnc_id "HGNC:8998" ; level 2 ; orig_coord_info "chr17,38786823,38786887,-" ; protein_id "ENSP00000477549.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PIP4K2B--LHX1-DT^ENST00000617499.1" ; transcript_name "PIP4K2B-202" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
PRRG1--AL592156.1 HAVANA gene 1056 12142 . + . FI_gene_label "PRRG1^ENSG00000130962.18" ; ID "PRRG1--AL592156.1^PRRG1^ENSG00000130962.18" ; ccdsid "CCDS14239.1" ; exon_id "ENSE00003481684.1" ; exon_number 2 ; gene_id "PRRG1--AL592156.1^PRRG1^ENSG00000130962.18" ; gene_name PRRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021360.3" ; havana_transcript "OTTHUMT00000056233.2" ; hgnc_id "HGNC:9469" ; level 2 ; orig_coord_info "chrX,37406250,37406259,+" ; protein_id "ENSP00000367894.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRRG1--AL592156.1^ENST00000378628.9" ; transcript_name "PRRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRRG1--AL592156.1 HAVANA mRNA 1056 12142 . + . FI_gene_label "PRRG1^ENSG00000130962.18" ; ID "PRRG1--AL592156.1^ENST00000378628.9" ; Parent "PRRG1--AL592156.1^PRRG1^ENSG00000130962.18" ; ccdsid "CCDS14239.1" ; exon_id "ENSE00003481684.1" ; exon_number 2 ; gene_id "PRRG1--AL592156.1^PRRG1^ENSG00000130962.18" ; gene_name PRRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021360.3" ; havana_transcript "OTTHUMT00000056233.2" ; hgnc_id "HGNC:9469" ; level 2 ; orig_coord_info "chrX,37406250,37406259,+" ; protein_id "ENSP00000367894.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRRG1--AL592156.1^ENST00000378628.9" ; transcript_name "PRRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRRG1--BX842568.3 HAVANA gene 1056 12142 . + . FI_gene_label "PRRG1^ENSG00000130962.18" ; ID "PRRG1--BX842568.3^PRRG1^ENSG00000130962.18" ; ccdsid "CCDS14239.1" ; exon_id "ENSE00003481684.1" ; exon_number 2 ; gene_id "PRRG1--BX842568.3^PRRG1^ENSG00000130962.18" ; gene_name PRRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021360.3" ; havana_transcript "OTTHUMT00000056233.2" ; hgnc_id "HGNC:9469" ; level 2 ; orig_coord_info "chrX,37406250,37406259,+" ; protein_id "ENSP00000367894.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRRG1--BX842568.3^ENST00000378628.9" ; transcript_name "PRRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRRG1--BX842568.3 HAVANA mRNA 1056 12142 . + . FI_gene_label "PRRG1^ENSG00000130962.18" ; ID "PRRG1--BX842568.3^ENST00000378628.9" ; Parent "PRRG1--BX842568.3^PRRG1^ENSG00000130962.18" ; ccdsid "CCDS14239.1" ; exon_id "ENSE00003481684.1" ; exon_number 2 ; gene_id "PRRG1--BX842568.3^PRRG1^ENSG00000130962.18" ; gene_name PRRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021360.3" ; havana_transcript "OTTHUMT00000056233.2" ; hgnc_id "HGNC:9469" ; level 2 ; orig_coord_info "chrX,37406250,37406259,+" ; protein_id "ENSP00000367894.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PRRG1--BX842568.3^ENST00000378628.9" ; transcript_name "PRRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
QKI--PACRG HAVANA gene 1644 19444 . + . FI_gene_label "QKI^ENSG00000112531.17" ; ID "QKI--PACRG^QKI^ENSG00000112531.17" ; ccdsid "CCDS5287.1" ; exon_id "ENSE00002239670.1" ; exon_number 1 ; gene_id "QKI--PACRG^QKI^ENSG00000112531.17" ; gene_name QKI ; gene_type protein_coding ; havana_gene "OTTHUMG00000015977.6" ; havana_transcript "OTTHUMT00000043018.2" ; hgnc_id "HGNC:21100" ; level 2 ; orig_coord_info "chr6,163415194,163415335,+" ; protein_id "ENSP00000275262.7" ; tag basic CCDS ; transcript_id "QKI--PACRG^ENST00000275262.11" ; transcript_name "QKI-201" ; transcript_support_level 1 ; transcript_type protein_coding
QKI--PACRG HAVANA mRNA 1644 19444 . + . FI_gene_label "QKI^ENSG00000112531.17" ; ID "QKI--PACRG^ENST00000275262.11" ; Parent "QKI--PACRG^QKI^ENSG00000112531.17" ; ccdsid "CCDS5287.1" ; exon_id "ENSE00002239670.1" ; exon_number 1 ; gene_id "QKI--PACRG^QKI^ENSG00000112531.17" ; gene_name QKI ; gene_type protein_coding ; havana_gene "OTTHUMG00000015977.6" ; havana_transcript "OTTHUMT00000043018.2" ; hgnc_id "HGNC:21100" ; level 2 ; orig_coord_info "chr6,163415194,163415335,+" ; protein_id "ENSP00000275262.7" ; tag basic CCDS ; transcript_id "QKI--PACRG^ENST00000275262.11" ; transcript_name "QKI-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
QKI--PACRG HAVANA gene 30892 47051 . + . FI_gene_label "PACRG^ENSG00000112530.11" ; ID "QKI--PACRG^PACRG^ENSG00000112530.11" ; ccdsid "CCDS5284.1" ; exon_id "ENSE00001442919.1" ; exon_number 2 ; gene_id "QKI--PACRG^PACRG^ENSG00000112530.11" ; gene_name PACRG ; gene_type protein_coding ; havana_gene "OTTHUMG00000016116.2" ; havana_transcript "OTTHUMT00000400424.1" ; hgnc_id "HGNC:19152" ; level 2 ; orig_coord_info "chr6,162728236,162728391,+" ; protein_id "ENSP00000337946.3" ; tag basic CCDS ; transcript_id "QKI--PACRG^ENST00000337019.7" ; transcript_name "PACRG-201" ; transcript_support_level 2 ; transcript_type protein_coding
QKI--PACRG HAVANA mRNA 30892 47051 . + . FI_gene_label "PACRG^ENSG00000112530.11" ; ID "QKI--PACRG^ENST00000337019.7" ; Parent "QKI--PACRG^PACRG^ENSG00000112530.11" ; ccdsid "CCDS5284.1" ; exon_id "ENSE00001442919.1" ; exon_number 2 ; gene_id "QKI--PACRG^PACRG^ENSG00000112530.11" ; gene_name PACRG ; gene_type protein_coding ; havana_gene "OTTHUMG00000016116.2" ; havana_transcript "OTTHUMT00000400424.1" ; hgnc_id "HGNC:19152" ; level 2 ; orig_coord_info "chr6,162728236,162728391,+" ; protein_id "ENSP00000337946.3" ; tag basic CCDS ; transcript_id "QKI--PACRG^ENST00000337019.7" ; transcript_name "PACRG-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RAB6A--MPP7 HAVANA gene 1001 14432 . + . FI_gene_label "RAB6A^ENSG00000175582.20" ; ID "RAB6A--MPP7^RAB6A^ENSG00000175582.20" ; ccdsid "CCDS8223.1" ; exon_id "ENSE00002289073.1" ; exon_number 1 ; gene_id "RAB6A--MPP7^RAB6A^ENSG00000175582.20" ; gene_name RAB6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000134308.6" ; havana_transcript "OTTHUMT00000259240.3" ; hgnc_id "HGNC:9786" ; level 2 ; orig_coord_info "chr11,73760566,73760635,-" ; protein_id "ENSP00000311449.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "RAB6A--MPP7^ENST00000310653.10" ; transcript_name "RAB6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAB6A--MPP7 HAVANA mRNA 1001 14432 . + . FI_gene_label "RAB6A^ENSG00000175582.20" ; ID "RAB6A--MPP7^ENST00000310653.10" ; Parent "RAB6A--MPP7^RAB6A^ENSG00000175582.20" ; ccdsid "CCDS8223.1" ; exon_id "ENSE00002289073.1" ; exon_number 1 ; gene_id "RAB6A--MPP7^RAB6A^ENSG00000175582.20" ; gene_name RAB6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000134308.6" ; havana_transcript "OTTHUMT00000259240.3" ; hgnc_id "HGNC:9786" ; level 2 ; orig_coord_info "chr11,73760566,73760635,-" ; protein_id "ENSP00000311449.5" ; tag basic appris_alternative_1 CCDS ; transcript_id "RAB6A--MPP7^ENST00000310653.10" ; transcript_name "RAB6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RAB6A--MPP7 ENSEMBL gene 20705 43706 . + . FI_gene_label "MPP7^ENSG00000150054.18" ; ID "RAB6A--MPP7^MPP7^ENSG00000150054.18" ; ccdsid "CCDS7158.1" ; exon_id "ENSE00003581254.1" ; exon_number 3 ; gene_id "RAB6A--MPP7^MPP7^ENSG00000150054.18" ; gene_name MPP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017868.4" ; hgnc_id "HGNC:26542" ; level 3 ; orig_coord_info "chr10,28238568,28238604,-" ; protein_id "ENSP00000337907.5" ; tag basic appris_principal_1 CCDS ; transcript_id "RAB6A--MPP7^ENST00000337532.9" ; transcript_name "MPP7-201" ; transcript_support_level 5 ; transcript_type protein_coding
RAB6A--MPP7 ENSEMBL mRNA 20705 43706 . + . FI_gene_label "MPP7^ENSG00000150054.18" ; ID "RAB6A--MPP7^ENST00000337532.9" ; Parent "RAB6A--MPP7^MPP7^ENSG00000150054.18" ; ccdsid "CCDS7158.1" ; exon_id "ENSE00003581254.1" ; exon_number 3 ; gene_id "RAB6A--MPP7^MPP7^ENSG00000150054.18" ; gene_name MPP7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017868.4" ; hgnc_id "HGNC:26542" ; level 3 ; orig_coord_info "chr10,28238568,28238604,-" ; protein_id "ENSP00000337907.5" ; tag basic appris_principal_1 CCDS ; transcript_id "RAB6A--MPP7^ENST00000337532.9" ; transcript_name "MPP7-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RMND5A--ANAPC1 HAVANA gene 1001 16368 . + . FI_gene_label "RMND5A^ENSG00000153561.13" ; ID "RMND5A--ANAPC1^RMND5A^ENSG00000153561.13" ; ccdsid "CCDS1991.1" ; exon_id "ENSE00001653794.3" ; exon_number 1 ; gene_id "RMND5A--ANAPC1^RMND5A^ENSG00000153561.13" ; gene_name RMND5A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130262.4" ; havana_transcript "OTTHUMT00000252591.3" ; hgnc_id "HGNC:25850" ; level 2 ; orig_coord_info "chr2,86720668,86720809,+" ; protein_id "ENSP00000283632.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RMND5A--ANAPC1^ENST00000283632.5" ; transcript_name "RMND5A-201" ; transcript_support_level 1 ; transcript_type protein_coding
RMND5A--ANAPC1 HAVANA mRNA 1001 16368 . + . FI_gene_label "RMND5A^ENSG00000153561.13" ; ID "RMND5A--ANAPC1^ENST00000283632.5" ; Parent "RMND5A--ANAPC1^RMND5A^ENSG00000153561.13" ; ccdsid "CCDS1991.1" ; exon_id "ENSE00001653794.3" ; exon_number 1 ; gene_id "RMND5A--ANAPC1^RMND5A^ENSG00000153561.13" ; gene_name RMND5A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130262.4" ; havana_transcript "OTTHUMT00000252591.3" ; hgnc_id "HGNC:25850" ; level 2 ; orig_coord_info "chr2,86720668,86720809,+" ; protein_id "ENSP00000283632.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RMND5A--ANAPC1^ENST00000283632.5" ; transcript_name "RMND5A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RMND5A--ANAPC1 HAVANA gene 19866 69290 . + . FI_gene_label "ANAPC1^ENSG00000153107.13" ; ID "RMND5A--ANAPC1^ANAPC1^ENSG00000153107.13" ; ccdsid "CCDS2093.1" ; exon_id "ENSE00003534106.1" ; exon_number 2 ; gene_id "RMND5A--ANAPC1^ANAPC1^ENSG00000153107.13" ; gene_name ANAPC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192458.2" ; havana_transcript "OTTHUMT00000254045.4" ; hgnc_id "HGNC:19988" ; level 2 ; orig_coord_info "chr2,111880613,111880825,-" ; protein_id "ENSP00000339109.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RMND5A--ANAPC1^ENST00000341068.8" ; transcript_name "ANAPC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RMND5A--ANAPC1 HAVANA mRNA 19866 69290 . + . FI_gene_label "ANAPC1^ENSG00000153107.13" ; ID "RMND5A--ANAPC1^ENST00000341068.8" ; Parent "RMND5A--ANAPC1^ANAPC1^ENSG00000153107.13" ; ccdsid "CCDS2093.1" ; exon_id "ENSE00003534106.1" ; exon_number 2 ; gene_id "RMND5A--ANAPC1^ANAPC1^ENSG00000153107.13" ; gene_name ANAPC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192458.2" ; havana_transcript "OTTHUMT00000254045.4" ; hgnc_id "HGNC:19988" ; level 2 ; orig_coord_info "chr2,111880613,111880825,-" ; protein_id "ENSP00000339109.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RMND5A--ANAPC1^ENST00000341068.8" ; transcript_name "ANAPC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF150--AL359232.1 HAVANA gene 2092 16248 . + . FI_gene_label "RNF150^ENSG00000170153.11" ; ID "RNF150--AL359232.1^RNF150^ENSG00000170153.11" ; exon_id "ENSE00001133687.2" ; exon_number 1 ; gene_id "RNF150--AL359232.1^RNF150^ENSG00000170153.11" ; gene_name RNF150 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161380.8" ; havana_transcript "OTTHUMT00000364740.1" ; hgnc_id "HGNC:23138" ; level 2 ; orig_coord_info "chr4,141132325,141132808,-" ; protein_id "ENSP00000304321.3" ; tag basic appris_alternative_2 ; transcript_id "RNF150--AL359232.1^ENST00000306799.7" ; transcript_name "RNF150-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF150--AL359232.1 HAVANA mRNA 2092 16248 . + . FI_gene_label "RNF150^ENSG00000170153.11" ; ID "RNF150--AL359232.1^ENST00000306799.7" ; Parent "RNF150--AL359232.1^RNF150^ENSG00000170153.11" ; exon_id "ENSE00001133687.2" ; exon_number 1 ; gene_id "RNF150--AL359232.1^RNF150^ENSG00000170153.11" ; gene_name RNF150 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161380.8" ; havana_transcript "OTTHUMT00000364740.1" ; hgnc_id "HGNC:23138" ; level 2 ; orig_coord_info "chr4,141132325,141132808,-" ; protein_id "ENSP00000304321.3" ; tag basic appris_alternative_2 ; transcript_id "RNF150--AL359232.1^ENST00000306799.7" ; transcript_name "RNF150-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RRP1B--RSPH1 HAVANA gene 22105 31064 . + . FI_gene_label "RSPH1^ENSG00000160188.10" ; ID "RRP1B--RSPH1^RSPH1^ENSG00000160188.10" ; ccdsid "CCDS13688.1" ; exon_id "ENSE00001327702.4" ; exon_number 1 ; gene_id "RRP1B--RSPH1^RSPH1^ENSG00000160188.10" ; gene_name RSPH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086804.3" ; havana_transcript "OTTHUMT00000195379.2" ; hgnc_id "HGNC:12371" ; level 2 ; orig_coord_info "chr21,42496133,42496186,-" ; protein_id "ENSP00000291536.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRP1B--RSPH1^ENST00000291536.8" ; transcript_name "RSPH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RRP1B--RSPH1 HAVANA mRNA 22105 31064 . + . FI_gene_label "RSPH1^ENSG00000160188.10" ; ID "RRP1B--RSPH1^ENST00000291536.8" ; Parent "RRP1B--RSPH1^RSPH1^ENSG00000160188.10" ; ccdsid "CCDS13688.1" ; exon_id "ENSE00001327702.4" ; exon_number 1 ; gene_id "RRP1B--RSPH1^RSPH1^ENSG00000160188.10" ; gene_name RSPH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086804.3" ; havana_transcript "OTTHUMT00000195379.2" ; hgnc_id "HGNC:12371" ; level 2 ; orig_coord_info "chr21,42496133,42496186,-" ; protein_id "ENSP00000291536.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRP1B--RSPH1^ENST00000291536.8" ; transcript_name "RSPH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RRP1B--RSPH1 HAVANA gene 1001 19082 . + . FI_gene_label "RRP1B^ENSG00000160208.13" ; ID "RRP1B--RSPH1^RRP1B^ENSG00000160208.13" ; ccdsid "CCDS33577.1" ; exon_id "ENSE00001941645.2" ; exon_number 1 ; gene_id "RRP1B--RSPH1^RRP1B^ENSG00000160208.13" ; gene_name RRP1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000086872.4" ; havana_transcript "OTTHUMT00000195651.3" ; hgnc_id "HGNC:23818" ; level 2 ; orig_coord_info "chr21,43659665,43659794,+" ; protein_id "ENSP00000339145.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRP1B--RSPH1^ENST00000340648.6" ; transcript_name "RRP1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
RRP1B--RSPH1 HAVANA mRNA 1001 19082 . + . FI_gene_label "RRP1B^ENSG00000160208.13" ; ID "RRP1B--RSPH1^ENST00000340648.6" ; Parent "RRP1B--RSPH1^RRP1B^ENSG00000160208.13" ; ccdsid "CCDS33577.1" ; exon_id "ENSE00001941645.2" ; exon_number 1 ; gene_id "RRP1B--RSPH1^RRP1B^ENSG00000160208.13" ; gene_name RRP1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000086872.4" ; havana_transcript "OTTHUMT00000195651.3" ; hgnc_id "HGNC:23818" ; level 2 ; orig_coord_info "chr21,43659665,43659794,+" ; protein_id "ENSP00000339145.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RRP1B--RSPH1^ENST00000340648.6" ; transcript_name "RRP1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SH3BP2--FAM53A HAVANA gene 33218 42323 . + . FI_gene_label "FAM53A^ENSG00000174137.13" ; ID "SH3BP2--FAM53A^FAM53A^ENSG00000174137.13" ; ccdsid "CCDS33939.1" ; exon_id "ENSE00002054040.1" ; exon_number 2 ; gene_id "SH3BP2--FAM53A^FAM53A^ENSG00000174137.13" ; gene_name FAM53A ; gene_type protein_coding ; havana_gene "OTTHUMG00000159855.6" ; hgnc_id "HGNC:31860" ; level 2 ; orig_coord_info "chr4,1668667,1668741,-" ; protein_id "ENSP00000310057.6" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "SH3BP2--FAM53A^ENST00000308132.10" ; transcript_name "FAM53A-201" ; transcript_support_level 2 ; transcript_type protein_coding
SH3BP2--FAM53A HAVANA mRNA 33218 42323 . + . FI_gene_label "FAM53A^ENSG00000174137.13" ; ID "SH3BP2--FAM53A^ENST00000308132.10" ; Parent "SH3BP2--FAM53A^FAM53A^ENSG00000174137.13" ; ccdsid "CCDS33939.1" ; exon_id "ENSE00002054040.1" ; exon_number 2 ; gene_id "SH3BP2--FAM53A^FAM53A^ENSG00000174137.13" ; gene_name FAM53A ; gene_type protein_coding ; havana_gene "OTTHUMG00000159855.6" ; hgnc_id "HGNC:31860" ; level 2 ; orig_coord_info "chr4,1668667,1668741,-" ; protein_id "ENSP00000310057.6" ; tag alternative_5_UTR basic appris_principal_2 CCDS ; transcript_id "SH3BP2--FAM53A^ENST00000308132.10" ; transcript_name "FAM53A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SH3BP2--FAM53A HAVANA gene 11041 30217 . + . FI_gene_label "SH3BP2^ENSG00000087266.17" ; ID "SH3BP2--FAM53A^SH3BP2^ENSG00000087266.17" ; ccdsid "CCDS33944.1" ; exon_id "ENSE00003561695.1" ; exon_number 2 ; gene_id "SH3BP2--FAM53A^SH3BP2^ENSG00000087266.17" ; gene_name SH3BP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160801.18" ; havana_transcript "OTTHUMT00000362406.3" ; hgnc_id "HGNC:10825" ; level 2 ; orig_coord_info "chr4,2820618,2820753,+" ; protein_id "ENSP00000348685.5" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "SH3BP2--FAM53A^ENST00000356331.9" ; transcript_name "SH3BP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SH3BP2--FAM53A HAVANA mRNA 11041 30217 . + . FI_gene_label "SH3BP2^ENSG00000087266.17" ; ID "SH3BP2--FAM53A^ENST00000356331.9" ; Parent "SH3BP2--FAM53A^SH3BP2^ENSG00000087266.17" ; ccdsid "CCDS33944.1" ; exon_id "ENSE00003561695.1" ; exon_number 2 ; gene_id "SH3BP2--FAM53A^SH3BP2^ENSG00000087266.17" ; gene_name SH3BP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160801.18" ; havana_transcript "OTTHUMT00000362406.3" ; hgnc_id "HGNC:10825" ; level 2 ; orig_coord_info "chr4,2820618,2820753,+" ; protein_id "ENSP00000348685.5" ; tag alternative_5_UTR basic appris_principal_4 CCDS ; transcript_id "SH3BP2--FAM53A^ENST00000356331.9" ; transcript_name "SH3BP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SPG11--PATL2 HAVANA gene 1017 47130 . + . FI_gene_label "SPG11^ENSG00000104133.15" ; ID "SPG11--PATL2^SPG11^ENSG00000104133.15" ; ccdsid "CCDS10112.1" ; exon_id "ENSE00001940948.2" ; exon_number 1 ; gene_id "SPG11--PATL2^SPG11^ENSG00000104133.15" ; gene_name SPG11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131199.5" ; havana_transcript "OTTHUMT00000253927.2" ; hgnc_id "HGNC:11226" ; level 2 ; orig_coord_info "chr15,44663391,44663647,-" ; protein_id "ENSP00000261866.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SPG11--PATL2^ENST00000261866.12" ; transcript_name "SPG11-201" ; transcript_support_level 1 ; transcript_type protein_coding
SPG11--PATL2 HAVANA mRNA 1017 47130 . + . FI_gene_label "SPG11^ENSG00000104133.15" ; ID "SPG11--PATL2^ENST00000261866.12" ; Parent "SPG11--PATL2^SPG11^ENSG00000104133.15" ; ccdsid "CCDS10112.1" ; exon_id "ENSE00001940948.2" ; exon_number 1 ; gene_id "SPG11--PATL2^SPG11^ENSG00000104133.15" ; gene_name SPG11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131199.5" ; havana_transcript "OTTHUMT00000253927.2" ; hgnc_id "HGNC:11226" ; level 2 ; orig_coord_info "chr15,44663391,44663647,-" ; protein_id "ENSP00000261866.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "SPG11--PATL2^ENST00000261866.12" ; transcript_name "SPG11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SPG11--PATL2 HAVANA gene 51428 61594 . + . FI_gene_label "PATL2^ENSG00000229474.7" ; ID "SPG11--PATL2^PATL2^ENSG00000229474.7" ; ccdsid "CCDS45253.1" ; exon_id "ENSE00003683236.1" ; exon_number 2 ; gene_id "SPG11--PATL2^PATL2^ENSG00000229474.7" ; gene_name PATL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171932.2" ; havana_transcript "OTTHUMT00000415947.1" ; hgnc_id "HGNC:33630" ; level 2 ; orig_coord_info "chr15,44676475,44676490,-" ; protein_id "ENSP00000416673.1" ; tag basic appris_principal_4 CCDS ; transcript_id "SPG11--PATL2^ENST00000434130.6" ; transcript_name "PATL2-201" ; transcript_support_level 5 ; transcript_type protein_coding
SPG11--PATL2 HAVANA mRNA 51428 61594 . + . FI_gene_label "PATL2^ENSG00000229474.7" ; ID "SPG11--PATL2^ENST00000434130.6" ; Parent "SPG11--PATL2^PATL2^ENSG00000229474.7" ; ccdsid "CCDS45253.1" ; exon_id "ENSE00003683236.1" ; exon_number 2 ; gene_id "SPG11--PATL2^PATL2^ENSG00000229474.7" ; gene_name PATL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000171932.2" ; havana_transcript "OTTHUMT00000415947.1" ; hgnc_id "HGNC:33630" ; level 2 ; orig_coord_info "chr15,44676475,44676490,-" ; protein_id "ENSP00000416673.1" ; tag basic appris_principal_4 CCDS ; transcript_id "SPG11--PATL2^ENST00000434130.6" ; transcript_name "PATL2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TANK--TANC1 HAVANA gene 1001 20321 . + . FI_gene_label "TANK^ENSG00000136560.14" ; ID "TANK--TANC1^TANK^ENSG00000136560.14" ; ccdsid "CCDS2215.1" ; exon_id "ENSE00003538914.1" ; exon_number 2 ; gene_id "TANK--TANC1^TANK^ENSG00000136560.14" ; gene_name TANK ; gene_type protein_coding ; havana_gene "OTTHUMG00000132037.6" ; havana_transcript "OTTHUMT00000255058.2" ; hgnc_id "HGNC:11562" ; level 2 ; orig_coord_info "chr2,161179663,161179761,+" ; protein_id "ENSP00000259075.2" ; tag basic appris_principal_1 CCDS ; transcript_id "TANK--TANC1^ENST00000259075.6" ; transcript_name "TANK-201" ; transcript_support_level 1 ; transcript_type protein_coding
TANK--TANC1 HAVANA mRNA 1001 20321 . + . FI_gene_label "TANK^ENSG00000136560.14" ; ID "TANK--TANC1^ENST00000259075.6" ; Parent "TANK--TANC1^TANK^ENSG00000136560.14" ; ccdsid "CCDS2215.1" ; exon_id "ENSE00003538914.1" ; exon_number 2 ; gene_id "TANK--TANC1^TANK^ENSG00000136560.14" ; gene_name TANK ; gene_type protein_coding ; havana_gene "OTTHUMG00000132037.6" ; havana_transcript "OTTHUMT00000255058.2" ; hgnc_id "HGNC:11562" ; level 2 ; orig_coord_info "chr2,161179663,161179761,+" ; protein_id "ENSP00000259075.2" ; tag basic appris_principal_1 CCDS ; transcript_id "TANK--TANC1^ENST00000259075.6" ; transcript_name "TANK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TANK--TANC1 HAVANA gene 23365 58988 . + . FI_gene_label "TANC1^ENSG00000115183.15" ; ID "TANK--TANC1^TANC1^ENSG00000115183.15" ; ccdsid "CCDS42766.1" ; exon_id "ENSE00003715868.1" ; exon_number 3 ; gene_id "TANK--TANC1^TANC1^ENSG00000115183.15" ; gene_name TANC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153945.3" ; havana_transcript "OTTHUMT00000333135.2" ; hgnc_id "HGNC:29364" ; level 2 ; orig_coord_info "chr2,159065911,159065971,+" ; protein_id "ENSP00000263635.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TANK--TANC1^ENST00000263635.8" ; transcript_name "TANC1-201" ; transcript_support_level 5 ; transcript_type protein_coding
TANK--TANC1 HAVANA mRNA 23365 58988 . + . FI_gene_label "TANC1^ENSG00000115183.15" ; ID "TANK--TANC1^ENST00000263635.8" ; Parent "TANK--TANC1^TANC1^ENSG00000115183.15" ; ccdsid "CCDS42766.1" ; exon_id "ENSE00003715868.1" ; exon_number 3 ; gene_id "TANK--TANC1^TANC1^ENSG00000115183.15" ; gene_name TANC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000153945.3" ; havana_transcript "OTTHUMT00000333135.2" ; hgnc_id "HGNC:29364" ; level 2 ; orig_coord_info "chr2,159065911,159065971,+" ; protein_id "ENSP00000263635.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TANK--TANC1^ENST00000263635.8" ; transcript_name "TANC1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TBC1D31--FRMD4A HAVANA gene 46931 74740 . + . FI_gene_label "FRMD4A^ENSG00000151474.23" ; ID "TBC1D31--FRMD4A^FRMD4A^ENSG00000151474.23" ; exon_id "ENSE00001699048.1" ; exon_number 1 ; gene_id "TBC1D31--FRMD4A^FRMD4A^ENSG00000151474.23" ; gene_name FRMD4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017708.10" ; havana_transcript "OTTHUMT00000046891.2" ; hgnc_id "HGNC:25491" ; level 2 ; orig_coord_info "chr10,13971656,13971799,-" ; protein_id "ENSP00000264546.6" ; tag CAGE_supported_TSS mRNA_end_NF cds_end_NF ; transcript_id "TBC1D31--FRMD4A^ENST00000264546.10" ; transcript_name "FRMD4A-201" ; transcript_support_level 2 ; transcript_type protein_coding
TBC1D31--FRMD4A HAVANA mRNA 46931 74740 . + . FI_gene_label "FRMD4A^ENSG00000151474.23" ; ID "TBC1D31--FRMD4A^ENST00000264546.10" ; Parent "TBC1D31--FRMD4A^FRMD4A^ENSG00000151474.23" ; exon_id "ENSE00001699048.1" ; exon_number 1 ; gene_id "TBC1D31--FRMD4A^FRMD4A^ENSG00000151474.23" ; gene_name FRMD4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017708.10" ; havana_transcript "OTTHUMT00000046891.2" ; hgnc_id "HGNC:25491" ; level 2 ; orig_coord_info "chr10,13971656,13971799,-" ; protein_id "ENSP00000264546.6" ; tag CAGE_supported_TSS mRNA_end_NF cds_end_NF ; transcript_id "TBC1D31--FRMD4A^ENST00000264546.10" ; transcript_name "FRMD4A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
TBC1D31--FRMD4A HAVANA gene 2424 30937 . + . FI_gene_label "TBC1D31^ENSG00000156787.17" ; ID "TBC1D31--FRMD4A^TBC1D31^ENSG00000156787.17" ; ccdsid "CCDS6338.1" ; exon_id "ENSE00002732245.2" ; exon_number 1 ; gene_id "TBC1D31--FRMD4A^TBC1D31^ENSG00000156787.17" ; gene_name TBC1D31 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165081.9" ; havana_transcript "OTTHUMT00000381721.2" ; hgnc_id "HGNC:30888" ; level 2 ; orig_coord_info "chr8,123072770,123072846,+" ; protein_id "ENSP00000287380.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TBC1D31--FRMD4A^ENST00000287380.6" ; transcript_name "TBC1D31-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D31--FRMD4A HAVANA mRNA 2424 30937 . + . FI_gene_label "TBC1D31^ENSG00000156787.17" ; ID "TBC1D31--FRMD4A^ENST00000287380.6" ; Parent "TBC1D31--FRMD4A^TBC1D31^ENSG00000156787.17" ; ccdsid "CCDS6338.1" ; exon_id "ENSE00002732245.2" ; exon_number 1 ; gene_id "TBC1D31--FRMD4A^TBC1D31^ENSG00000156787.17" ; gene_name TBC1D31 ; gene_type protein_coding ; havana_gene "OTTHUMG00000165081.9" ; havana_transcript "OTTHUMT00000381721.2" ; hgnc_id "HGNC:30888" ; level 2 ; orig_coord_info "chr8,123072770,123072846,+" ; protein_id "ENSP00000287380.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "TBC1D31--FRMD4A^ENST00000287380.6" ; transcript_name "TBC1D31-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBC1D9--RNF150 HAVANA gene 27050 41206 . + . FI_gene_label "RNF150^ENSG00000170153.11" ; ID "TBC1D9--RNF150^RNF150^ENSG00000170153.11" ; exon_id "ENSE00001133687.2" ; exon_number 1 ; gene_id "TBC1D9--RNF150^RNF150^ENSG00000170153.11" ; gene_name RNF150 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161380.8" ; havana_transcript "OTTHUMT00000364740.1" ; hgnc_id "HGNC:23138" ; level 2 ; orig_coord_info "chr4,141132325,141132808,-" ; protein_id "ENSP00000304321.3" ; tag basic appris_alternative_2 ; transcript_id "TBC1D9--RNF150^ENST00000306799.7" ; transcript_name "RNF150-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D9--RNF150 HAVANA mRNA 27050 41206 . + . FI_gene_label "RNF150^ENSG00000170153.11" ; ID "TBC1D9--RNF150^ENST00000306799.7" ; Parent "TBC1D9--RNF150^RNF150^ENSG00000170153.11" ; exon_id "ENSE00001133687.2" ; exon_number 1 ; gene_id "TBC1D9--RNF150^RNF150^ENSG00000170153.11" ; gene_name RNF150 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161380.8" ; havana_transcript "OTTHUMT00000364740.1" ; hgnc_id "HGNC:23138" ; level 2 ; orig_coord_info "chr4,141132325,141132808,-" ; protein_id "ENSP00000304321.3" ; tag basic appris_alternative_2 ; transcript_id "TBC1D9--RNF150^ENST00000306799.7" ; transcript_name "RNF150-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBC1D9--RNF150 HAVANA gene 1001 22958 . + . FI_gene_label "TBC1D9^ENSG00000109436.8" ; ID "TBC1D9--RNF150^TBC1D9^ENSG00000109436.8" ; ccdsid "CCDS47136.1" ; exon_id "ENSE00002040929.2" ; exon_number 1 ; gene_id "TBC1D9--RNF150^TBC1D9^ENSG00000109436.8" ; gene_name TBC1D9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161405.3" ; havana_transcript "OTTHUMT00000364806.2" ; hgnc_id "HGNC:21710" ; level 2 ; orig_coord_info "chr4,140755916,140756045,-" ; protein_id "ENSP00000411197.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBC1D9--RNF150^ENST00000442267.3" ; transcript_name "TBC1D9-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBC1D9--RNF150 HAVANA mRNA 1001 22958 . + . FI_gene_label "TBC1D9^ENSG00000109436.8" ; ID "TBC1D9--RNF150^ENST00000442267.3" ; Parent "TBC1D9--RNF150^TBC1D9^ENSG00000109436.8" ; ccdsid "CCDS47136.1" ; exon_id "ENSE00002040929.2" ; exon_number 1 ; gene_id "TBC1D9--RNF150^TBC1D9^ENSG00000109436.8" ; gene_name TBC1D9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161405.3" ; havana_transcript "OTTHUMT00000364806.2" ; hgnc_id "HGNC:21710" ; level 2 ; orig_coord_info "chr4,140755916,140756045,-" ; protein_id "ENSP00000411197.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBC1D9--RNF150^ENST00000442267.3" ; transcript_name "TBC1D9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TBCK--RNU6-173P HAVANA gene 1001 43088 . + . FI_gene_label "TBCK^ENSG00000145348.17" ; ID "TBCK--RNU6-173P^TBCK^ENSG00000145348.17" ; ccdsid "CCDS54788.1" ; exon_id "ENSE00002230940.1" ; exon_number 2 ; gene_id "TBCK--RNU6-173P^TBCK^ENSG00000145348.17" ; gene_name TBCK ; gene_type protein_coding ; havana_gene "OTTHUMG00000131214.10" ; havana_transcript "OTTHUMT00000253953.5" ; hgnc_id "HGNC:28261" ; level 2 ; orig_coord_info "chr4,106308768,106308960,-" ; protein_id "ENSP00000273980.4" ; tag dotter_confirmed RNA_Seq_supported_partial basic appris_principal_1 CCDS ; transcript_id "TBCK--RNU6-173P^ENST00000273980.10" ; transcript_name "TBCK-201" ; transcript_support_level 5 ; transcript_type protein_coding
TBCK--RNU6-173P HAVANA mRNA 1001 43088 . + . FI_gene_label "TBCK^ENSG00000145348.17" ; ID "TBCK--RNU6-173P^ENST00000273980.10" ; Parent "TBCK--RNU6-173P^TBCK^ENSG00000145348.17" ; ccdsid "CCDS54788.1" ; exon_id "ENSE00002230940.1" ; exon_number 2 ; gene_id "TBCK--RNU6-173P^TBCK^ENSG00000145348.17" ; gene_name TBCK ; gene_type protein_coding ; havana_gene "OTTHUMG00000131214.10" ; havana_transcript "OTTHUMT00000253953.5" ; hgnc_id "HGNC:28261" ; level 2 ; orig_coord_info "chr4,106308768,106308960,-" ; protein_id "ENSP00000273980.4" ; tag dotter_confirmed RNA_Seq_supported_partial basic appris_principal_1 CCDS ; transcript_id "TBCK--RNU6-173P^ENST00000273980.10" ; transcript_name "TBCK-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TBCK--TRIML1 HAVANA gene 1001 43088 . + . FI_gene_label "TBCK^ENSG00000145348.17" ; ID "TBCK--TRIML1^TBCK^ENSG00000145348.17" ; ccdsid "CCDS54788.1" ; exon_id "ENSE00002230940.1" ; exon_number 2 ; gene_id "TBCK--TRIML1^TBCK^ENSG00000145348.17" ; gene_name TBCK ; gene_type protein_coding ; havana_gene "OTTHUMG00000131214.10" ; havana_transcript "OTTHUMT00000253953.5" ; hgnc_id "HGNC:28261" ; level 2 ; orig_coord_info "chr4,106308768,106308960,-" ; protein_id "ENSP00000273980.4" ; tag dotter_confirmed RNA_Seq_supported_partial basic appris_principal_1 CCDS ; transcript_id "TBCK--TRIML1^ENST00000273980.10" ; transcript_name "TBCK-201" ; transcript_support_level 5 ; transcript_type protein_coding
TBCK--TRIML1 HAVANA mRNA 1001 43088 . + . FI_gene_label "TBCK^ENSG00000145348.17" ; ID "TBCK--TRIML1^ENST00000273980.10" ; Parent "TBCK--TRIML1^TBCK^ENSG00000145348.17" ; ccdsid "CCDS54788.1" ; exon_id "ENSE00002230940.1" ; exon_number 2 ; gene_id "TBCK--TRIML1^TBCK^ENSG00000145348.17" ; gene_name TBCK ; gene_type protein_coding ; havana_gene "OTTHUMG00000131214.10" ; havana_transcript "OTTHUMT00000253953.5" ; hgnc_id "HGNC:28261" ; level 2 ; orig_coord_info "chr4,106308768,106308960,-" ; protein_id "ENSP00000273980.4" ; tag dotter_confirmed RNA_Seq_supported_partial basic appris_principal_1 CCDS ; transcript_id "TBCK--TRIML1^ENST00000273980.10" ; transcript_name "TBCK-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TBCK--TRIML1 HAVANA gene 46089 51915 . + . FI_gene_label "TRIML1^ENSG00000184108.8" ; ID "TBCK--TRIML1^TRIML1^ENSG00000184108.8" ; ccdsid "CCDS3851.1" ; exon_id "ENSE00001294959.5" ; exon_number 1 ; gene_id "TBCK--TRIML1^TRIML1^ENSG00000184108.8" ; gene_name TRIML1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160237.2" ; havana_transcript "OTTHUMT00000359813.2" ; hgnc_id "HGNC:26698" ; level 2 ; orig_coord_info "chr4,188139559,188139966,+" ; protein_id "ENSP00000327738.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBCK--TRIML1^ENST00000332517.4" ; transcript_name "TRIML1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TBCK--TRIML1 HAVANA mRNA 46089 51915 . + . FI_gene_label "TRIML1^ENSG00000184108.8" ; ID "TBCK--TRIML1^ENST00000332517.4" ; Parent "TBCK--TRIML1^TRIML1^ENSG00000184108.8" ; ccdsid "CCDS3851.1" ; exon_id "ENSE00001294959.5" ; exon_number 1 ; gene_id "TBCK--TRIML1^TRIML1^ENSG00000184108.8" ; gene_name TRIML1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000160237.2" ; havana_transcript "OTTHUMT00000359813.2" ; hgnc_id "HGNC:26698" ; level 2 ; orig_coord_info "chr4,188139559,188139966,+" ; protein_id "ENSP00000327738.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TBCK--TRIML1^ENST00000332517.4" ; transcript_name "TRIML1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TEX261--MYO1F HAVANA gene 1001 8248 . + . FI_gene_label "TEX261^ENSG00000144043.12" ; ID "TEX261--MYO1F^TEX261^ENSG00000144043.12" ; ccdsid "CCDS1914.1" ; exon_id "ENSE00001957494.2" ; exon_number 1 ; gene_id "TEX261--MYO1F^TEX261^ENSG00000144043.12" ; gene_name TEX261 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170601.2" ; havana_transcript "OTTHUMT00000251916.2" ; hgnc_id "HGNC:30712" ; level 2 ; orig_coord_info "chr2,70994688,70994757,-" ; protein_id "ENSP00000272438.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TEX261--MYO1F^ENST00000272438.9" ; transcript_name "TEX261-201" ; transcript_support_level 1 ; transcript_type protein_coding
TEX261--MYO1F HAVANA mRNA 1001 8248 . + . FI_gene_label "TEX261^ENSG00000144043.12" ; ID "TEX261--MYO1F^ENST00000272438.9" ; Parent "TEX261--MYO1F^TEX261^ENSG00000144043.12" ; ccdsid "CCDS1914.1" ; exon_id "ENSE00001957494.2" ; exon_number 1 ; gene_id "TEX261--MYO1F^TEX261^ENSG00000144043.12" ; gene_name TEX261 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170601.2" ; havana_transcript "OTTHUMT00000251916.2" ; hgnc_id "HGNC:30712" ; level 2 ; orig_coord_info "chr2,70994688,70994757,-" ; protein_id "ENSP00000272438.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TEX261--MYO1F^ENST00000272438.9" ; transcript_name "TEX261-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TEX261--MYO1F HAVANA gene 11388 15792 . + . FI_gene_label "MYO1F^ENSG00000142347.19" ; ID "TEX261--MYO1F^MYO1F^ENSG00000142347.19" ; exon_id "ENSE00003656361.1" ; exon_number 1 ; gene_id "TEX261--MYO1F^MYO1F^ENSG00000142347.19" ; gene_name MYO1F ; gene_type protein_coding ; havana_gene "OTTHUMG00000156005.7" ; havana_transcript "OTTHUMT00000460253.1" ; hgnc_id "HGNC:7600" ; level 2 ; orig_coord_info "chr19,8577307,8577309,-" ; protein_id "ENSP00000469668.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "TEX261--MYO1F^ENST00000596675.1" ; transcript_name "MYO1F-208" ; transcript_support_level 5 ; transcript_type protein_coding
TEX261--MYO1F HAVANA mRNA 11388 15792 . + . FI_gene_label "MYO1F^ENSG00000142347.19" ; ID "TEX261--MYO1F^ENST00000596675.1" ; Parent "TEX261--MYO1F^MYO1F^ENSG00000142347.19" ; exon_id "ENSE00003656361.1" ; exon_number 1 ; gene_id "TEX261--MYO1F^MYO1F^ENSG00000142347.19" ; gene_name MYO1F ; gene_type protein_coding ; havana_gene "OTTHUMG00000156005.7" ; havana_transcript "OTTHUMT00000460253.1" ; hgnc_id "HGNC:7600" ; level 2 ; orig_coord_info "chr19,8577307,8577309,-" ; protein_id "ENSP00000469668.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "TEX261--MYO1F^ENST00000596675.1" ; transcript_name "MYO1F-208" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMTC2--AC089998.1 HAVANA gene 1027 21228 . + . FI_gene_label "TMTC2^ENSG00000179104.9" ; ID "TMTC2--AC089998.1^TMTC2^ENSG00000179104.9" ; ccdsid "CCDS9025.1" ; exon_id "ENSE00003466705.2" ; exon_number 1 ; gene_id "TMTC2--AC089998.1^TMTC2^ENSG00000179104.9" ; gene_name TMTC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169736.4" ; havana_transcript "OTTHUMT00000405663.2" ; hgnc_id "HGNC:25440" ; level 2 ; orig_coord_info "chr12,82687587,82687669,+" ; protein_id "ENSP00000322300.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMTC2--AC089998.1^ENST00000321196.8" ; transcript_name "TMTC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMTC2--AC089998.1 HAVANA mRNA 1027 21228 . + . FI_gene_label "TMTC2^ENSG00000179104.9" ; ID "TMTC2--AC089998.1^ENST00000321196.8" ; Parent "TMTC2--AC089998.1^TMTC2^ENSG00000179104.9" ; ccdsid "CCDS9025.1" ; exon_id "ENSE00003466705.2" ; exon_number 1 ; gene_id "TMTC2--AC089998.1^TMTC2^ENSG00000179104.9" ; gene_name TMTC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169736.4" ; havana_transcript "OTTHUMT00000405663.2" ; hgnc_id "HGNC:25440" ; level 2 ; orig_coord_info "chr12,82687587,82687669,+" ; protein_id "ENSP00000322300.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMTC2--AC089998.1^ENST00000321196.8" ; transcript_name "TMTC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMTC2--AC091214.1 HAVANA gene 1027 21228 . + . FI_gene_label "TMTC2^ENSG00000179104.9" ; ID "TMTC2--AC091214.1^TMTC2^ENSG00000179104.9" ; ccdsid "CCDS9025.1" ; exon_id "ENSE00003466705.2" ; exon_number 1 ; gene_id "TMTC2--AC091214.1^TMTC2^ENSG00000179104.9" ; gene_name TMTC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169736.4" ; havana_transcript "OTTHUMT00000405663.2" ; hgnc_id "HGNC:25440" ; level 2 ; orig_coord_info "chr12,82687587,82687669,+" ; protein_id "ENSP00000322300.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMTC2--AC091214.1^ENST00000321196.8" ; transcript_name "TMTC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMTC2--AC091214.1 HAVANA mRNA 1027 21228 . + . FI_gene_label "TMTC2^ENSG00000179104.9" ; ID "TMTC2--AC091214.1^ENST00000321196.8" ; Parent "TMTC2--AC091214.1^TMTC2^ENSG00000179104.9" ; ccdsid "CCDS9025.1" ; exon_id "ENSE00003466705.2" ; exon_number 1 ; gene_id "TMTC2--AC091214.1^TMTC2^ENSG00000179104.9" ; gene_name TMTC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169736.4" ; havana_transcript "OTTHUMT00000405663.2" ; hgnc_id "HGNC:25440" ; level 2 ; orig_coord_info "chr12,82687587,82687669,+" ; protein_id "ENSP00000322300.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMTC2--AC091214.1^ENST00000321196.8" ; transcript_name "TMTC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRAPPC9--SLC45A4 HAVANA gene 50063 59555 . + . FI_gene_label "SLC45A4^ENSG00000022567.10" ; ID "TRAPPC9--SLC45A4^SLC45A4^ENSG00000022567.10" ; ccdsid "CCDS34948.1" ; exon_id "ENSE00001475008.1" ; exon_number 1 ; gene_id "TRAPPC9--SLC45A4^SLC45A4^ENSG00000022567.10" ; gene_name SLC45A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164393.4" ; havana_transcript "OTTHUMT00000378571.3" ; hgnc_id "HGNC:29196" ; level 2 ; orig_coord_info "chr8,141228179,141228266,-" ; protein_id "ENSP00000024061.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TRAPPC9--SLC45A4^ENST00000024061.7" ; transcript_name "SLC45A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRAPPC9--SLC45A4 HAVANA mRNA 50063 59555 . + . FI_gene_label "SLC45A4^ENSG00000022567.10" ; ID "TRAPPC9--SLC45A4^ENST00000024061.7" ; Parent "TRAPPC9--SLC45A4^SLC45A4^ENSG00000022567.10" ; ccdsid "CCDS34948.1" ; exon_id "ENSE00001475008.1" ; exon_number 1 ; gene_id "TRAPPC9--SLC45A4^SLC45A4^ENSG00000022567.10" ; gene_name SLC45A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164393.4" ; havana_transcript "OTTHUMT00000378571.3" ; hgnc_id "HGNC:29196" ; level 2 ; orig_coord_info "chr8,141228179,141228266,-" ; protein_id "ENSP00000024061.3" ; tag basic appris_principal_1 CCDS ; transcript_id "TRAPPC9--SLC45A4^ENST00000024061.7" ; transcript_name "SLC45A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRAPPC9--SLC45A4 HAVANA gene 1836 42941 . + . FI_gene_label "TRAPPC9^ENSG00000167632.18" ; ID "TRAPPC9--SLC45A4^TRAPPC9^ENSG00000167632.18" ; ccdsid "CCDS55278.1" ; exon_id "ENSE00003610885.1" ; exon_number 2 ; gene_id "TRAPPC9--SLC45A4^TRAPPC9^ENSG00000167632.18" ; gene_name TRAPPC9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164187.10" ; havana_transcript "OTTHUMT00000497841.1" ; hgnc_id "HGNC:30832" ; level 2 ; orig_coord_info "chr8,140450790,140451373,-" ; protein_id "ENSP00000405060.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRAPPC9--SLC45A4^ENST00000438773.4" ; transcript_name "TRAPPC9-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRAPPC9--SLC45A4 HAVANA mRNA 1836 42941 . + . FI_gene_label "TRAPPC9^ENSG00000167632.18" ; ID "TRAPPC9--SLC45A4^ENST00000438773.4" ; Parent "TRAPPC9--SLC45A4^TRAPPC9^ENSG00000167632.18" ; ccdsid "CCDS55278.1" ; exon_id "ENSE00003610885.1" ; exon_number 2 ; gene_id "TRAPPC9--SLC45A4^TRAPPC9^ENSG00000167632.18" ; gene_name TRAPPC9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164187.10" ; havana_transcript "OTTHUMT00000497841.1" ; hgnc_id "HGNC:30832" ; level 2 ; orig_coord_info "chr8,140450790,140451373,-" ; protein_id "ENSP00000405060.3" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRAPPC9--SLC45A4^ENST00000438773.4" ; transcript_name "TRAPPC9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTC39C--LINC01151 HAVANA gene 1001 21959 . + . FI_gene_label "TTC39C^ENSG00000168234.13" ; ID "TTC39C--LINC01151^TTC39C^ENSG00000168234.13" ; ccdsid "CCDS32804.1" ; exon_id "ENSE00003492798.1" ; exon_number 2 ; gene_id "TTC39C--LINC01151^TTC39C^ENSG00000168234.13" ; gene_name TTC39C ; gene_type protein_coding ; havana_gene "OTTHUMG00000179403.6" ; havana_transcript "OTTHUMT00000446105.1" ; hgnc_id "HGNC:26595" ; level 2 ; orig_coord_info "chr18,24064156,24064188,+" ; protein_id "ENSP00000306598.6" ; tag basic CCDS ; transcript_id "TTC39C--LINC01151^ENST00000304621.10" ; transcript_name "TTC39C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TTC39C--LINC01151 HAVANA mRNA 1001 21959 . + . FI_gene_label "TTC39C^ENSG00000168234.13" ; ID "TTC39C--LINC01151^ENST00000304621.10" ; Parent "TTC39C--LINC01151^TTC39C^ENSG00000168234.13" ; ccdsid "CCDS32804.1" ; exon_id "ENSE00003492798.1" ; exon_number 2 ; gene_id "TTC39C--LINC01151^TTC39C^ENSG00000168234.13" ; gene_name TTC39C ; gene_type protein_coding ; havana_gene "OTTHUMG00000179403.6" ; havana_transcript "OTTHUMT00000446105.1" ; hgnc_id "HGNC:26595" ; level 2 ; orig_coord_info "chr18,24064156,24064188,+" ; protein_id "ENSP00000306598.6" ; tag basic CCDS ; transcript_id "TTC39C--LINC01151^ENST00000304621.10" ; transcript_name "TTC39C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXN2--FOXRED2 HAVANA gene 1001 5862 . + . FI_gene_label "TXN2^ENSG00000100348.10" ; ID "TXN2--FOXRED2^TXN2^ENSG00000100348.10" ; ccdsid "CCDS13928.1" ; exon_id "ENSE00001666349.1" ; exon_number 2 ; gene_id "TXN2--FOXRED2^TXN2^ENSG00000100348.10" ; gene_name TXN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150596.4" ; havana_transcript "OTTHUMT00000319016.2" ; hgnc_id "HGNC:17772" ; level 2 ; orig_coord_info "chr22,36480575,36480837,-" ; protein_id "ENSP00000216185.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXN2--FOXRED2^ENST00000216185.7" ; transcript_name "TXN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXN2--FOXRED2 HAVANA mRNA 1001 5862 . + . FI_gene_label "TXN2^ENSG00000100348.10" ; ID "TXN2--FOXRED2^ENST00000216185.7" ; Parent "TXN2--FOXRED2^TXN2^ENSG00000100348.10" ; ccdsid "CCDS13928.1" ; exon_id "ENSE00001666349.1" ; exon_number 2 ; gene_id "TXN2--FOXRED2^TXN2^ENSG00000100348.10" ; gene_name TXN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150596.4" ; havana_transcript "OTTHUMT00000319016.2" ; hgnc_id "HGNC:17772" ; level 2 ; orig_coord_info "chr22,36480575,36480837,-" ; protein_id "ENSP00000216185.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXN2--FOXRED2^ENST00000216185.7" ; transcript_name "TXN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXN2--FOXRED2 HAVANA gene 8884 19692 . + . FI_gene_label "FOXRED2^ENSG00000100350.15" ; ID "TXN2--FOXRED2^FOXRED2^ENSG00000100350.15" ; ccdsid "CCDS13929.1" ; exon_id "ENSE00000880066.3" ; exon_number 2 ; gene_id "TXN2--FOXRED2^FOXRED2^ENSG00000100350.15" ; gene_name FOXRED2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000044614.6" ; havana_transcript "OTTHUMT00000075371.2" ; hgnc_id "HGNC:26264" ; level 2 ; orig_coord_info "chr22,36505896,36506422,-" ; protein_id "ENSP00000216187.6" ; tag basic appris_principal_1 CCDS ; transcript_id "TXN2--FOXRED2^ENST00000216187.10" ; transcript_name "FOXRED2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXN2--FOXRED2 HAVANA mRNA 8884 19692 . + . FI_gene_label "FOXRED2^ENSG00000100350.15" ; ID "TXN2--FOXRED2^ENST00000216187.10" ; Parent "TXN2--FOXRED2^FOXRED2^ENSG00000100350.15" ; ccdsid "CCDS13929.1" ; exon_id "ENSE00000880066.3" ; exon_number 2 ; gene_id "TXN2--FOXRED2^FOXRED2^ENSG00000100350.15" ; gene_name FOXRED2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000044614.6" ; havana_transcript "OTTHUMT00000075371.2" ; hgnc_id "HGNC:26264" ; level 2 ; orig_coord_info "chr22,36505896,36506422,-" ; protein_id "ENSP00000216187.6" ; tag basic appris_principal_1 CCDS ; transcript_id "TXN2--FOXRED2^ENST00000216187.10" ; transcript_name "FOXRED2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1--AC024610.2 HAVANA gene 1001 19204 . + . FI_gene_label "UHRF1^ENSG00000276043.5" ; ID "UHRF1--AC024610.2^UHRF1^ENSG00000276043.5" ; ccdsid "CCDS74263.1" ; exon_id "ENSE00003892389.1" ; exon_number 2 ; gene_id "UHRF1--AC024610.2^UHRF1^ENSG00000276043.5" ; gene_name UHRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180251.5" ; havana_transcript "OTTHUMT00000450444.3" ; hgnc_id "HGNC:12556" ; level 2 ; orig_coord_info "chr19,4910886,4911038,+" ; protein_id "ENSP00000484739.1" ; tag basic appris_principal_4 CCDS ; transcript_id "UHRF1--AC024610.2^ENST00000612630.4" ; transcript_name "UHRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1--AC024610.2 HAVANA mRNA 1001 19204 . + . FI_gene_label "UHRF1^ENSG00000276043.5" ; ID "UHRF1--AC024610.2^ENST00000612630.4" ; Parent "UHRF1--AC024610.2^UHRF1^ENSG00000276043.5" ; ccdsid "CCDS74263.1" ; exon_id "ENSE00003892389.1" ; exon_number 2 ; gene_id "UHRF1--AC024610.2^UHRF1^ENSG00000276043.5" ; gene_name UHRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180251.5" ; havana_transcript "OTTHUMT00000450444.3" ; hgnc_id "HGNC:12556" ; level 2 ; orig_coord_info "chr19,4910886,4911038,+" ; protein_id "ENSP00000484739.1" ; tag basic appris_principal_4 CCDS ; transcript_id "UHRF1--AC024610.2^ENST00000612630.4" ; transcript_name "UHRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1--ASIC2 HAVANA gene 25927 39408 . + . FI_gene_label "ASIC2^ENSG00000108684.15" ; ID "UHRF1--ASIC2^ASIC2^ENSG00000108684.15" ; ccdsid "CCDS11276.1" ; exon_id "ENSE00001248823.4" ; exon_number 1 ; gene_id "UHRF1--ASIC2^ASIC2^ENSG00000108684.15" ; gene_name ASIC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132885.4" ; havana_transcript "OTTHUMT00000256378.1" ; hgnc_id "HGNC:99" ; level 2 ; orig_coord_info "chr17,33291408,33292115,-" ; protein_id "ENSP00000225823.2" ; tag basic MANE_Select CCDS ; transcript_id "UHRF1--ASIC2^ENST00000225823.7" ; transcript_name "ASIC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1--ASIC2 HAVANA mRNA 25927 39408 . + . FI_gene_label "ASIC2^ENSG00000108684.15" ; ID "UHRF1--ASIC2^ENST00000225823.7" ; Parent "UHRF1--ASIC2^ASIC2^ENSG00000108684.15" ; ccdsid "CCDS11276.1" ; exon_id "ENSE00001248823.4" ; exon_number 1 ; gene_id "UHRF1--ASIC2^ASIC2^ENSG00000108684.15" ; gene_name ASIC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132885.4" ; havana_transcript "OTTHUMT00000256378.1" ; hgnc_id "HGNC:99" ; level 2 ; orig_coord_info "chr17,33291408,33292115,-" ; protein_id "ENSP00000225823.2" ; tag basic MANE_Select CCDS ; transcript_id "UHRF1--ASIC2^ENST00000225823.7" ; transcript_name "ASIC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
UHRF1--ASIC2 HAVANA gene 1001 19204 . + . FI_gene_label "UHRF1^ENSG00000276043.5" ; ID "UHRF1--ASIC2^UHRF1^ENSG00000276043.5" ; ccdsid "CCDS74263.1" ; exon_id "ENSE00003892389.1" ; exon_number 2 ; gene_id "UHRF1--ASIC2^UHRF1^ENSG00000276043.5" ; gene_name UHRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180251.5" ; havana_transcript "OTTHUMT00000450444.3" ; hgnc_id "HGNC:12556" ; level 2 ; orig_coord_info "chr19,4910886,4911038,+" ; protein_id "ENSP00000484739.1" ; tag basic appris_principal_4 CCDS ; transcript_id "UHRF1--ASIC2^ENST00000612630.4" ; transcript_name "UHRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
UHRF1--ASIC2 HAVANA mRNA 1001 19204 . + . FI_gene_label "UHRF1^ENSG00000276043.5" ; ID "UHRF1--ASIC2^ENST00000612630.4" ; Parent "UHRF1--ASIC2^UHRF1^ENSG00000276043.5" ; ccdsid "CCDS74263.1" ; exon_id "ENSE00003892389.1" ; exon_number 2 ; gene_id "UHRF1--ASIC2^UHRF1^ENSG00000276043.5" ; gene_name UHRF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180251.5" ; havana_transcript "OTTHUMT00000450444.3" ; hgnc_id "HGNC:12556" ; level 2 ; orig_coord_info "chr19,4910886,4911038,+" ; protein_id "ENSP00000484739.1" ; tag basic appris_principal_4 CCDS ; transcript_id "UHRF1--ASIC2^ENST00000612630.4" ; transcript_name "UHRF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VMP1--RPS6KB1 HAVANA gene 23241 44161 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "VMP1--RPS6KB1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "VMP1--RPS6KB1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "VMP1--RPS6KB1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
VMP1--RPS6KB1 HAVANA mRNA 23241 44161 . + . FI_gene_label "RPS6KB1^ENSG00000108443.14" ; ID "VMP1--RPS6KB1^ENST00000225577.9" ; Parent "VMP1--RPS6KB1^RPS6KB1^ENSG00000108443.14" ; ccdsid "CCDS11621.1" ; exon_id "ENSE00001823154.2" ; exon_number 1 ; gene_id "VMP1--RPS6KB1^RPS6KB1^ENSG00000108443.14" ; gene_name RPS6KB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150642.5" ; havana_transcript "OTTHUMT00000319324.2" ; hgnc_id "HGNC:10436" ; level 2 ; orig_coord_info "chr17,59893185,59893325,+" ; protein_id "ENSP00000225577.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "VMP1--RPS6KB1^ENST00000225577.9" ; transcript_name "RPS6KB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VMP1--RPS6KB1 HAVANA gene 1463 20165 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "VMP1--RPS6KB1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "VMP1--RPS6KB1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VMP1--RPS6KB1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
VMP1--RPS6KB1 HAVANA mRNA 1463 20165 . + . FI_gene_label "VMP1^ENSG00000062716.13" ; ID "VMP1--RPS6KB1^ENST00000262291.9" ; Parent "VMP1--RPS6KB1^VMP1^ENSG00000062716.13" ; ccdsid "CCDS11619.1" ; exon_id "ENSE00003550286.1" ; exon_number 2 ; gene_id "VMP1--RPS6KB1^VMP1^ENSG00000062716.13" ; gene_name VMP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179882.4" ; havana_transcript "OTTHUMT00000448793.2" ; hgnc_id "HGNC:29559" ; level 2 ; orig_coord_info "chr17,59731447,59731522,+" ; protein_id "ENSP00000262291.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VMP1--RPS6KB1^ENST00000262291.9" ; transcript_name "VMP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS13B--AGK HAVANA gene 1001 19227 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "VPS13B--AGK^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "VPS13B--AGK^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "VPS13B--AGK^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
VPS13B--AGK HAVANA mRNA 1001 19227 . + . FI_gene_label "VPS13B^ENSG00000132549.19" ; ID "VPS13B--AGK^ENST00000355155.5" ; Parent "VPS13B--AGK^VPS13B^ENSG00000132549.19" ; ccdsid "CCDS6283.1" ; exon_id "ENSE00002135952.1" ; exon_number 2 ; gene_id "VPS13B--AGK^VPS13B^ENSG00000132549.19" ; gene_name VPS13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000140383.3" ; havana_transcript "OTTHUMT00000277140.1" ; hgnc_id "HGNC:2183" ; level 2 ; orig_coord_info "chr8,99013789,99013935,+" ; protein_id "ENSP00000347281.1" ; tag basic CCDS ; transcript_id "VPS13B--AGK^ENST00000355155.5" ; transcript_name "VPS13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VPS13B--AGK HAVANA gene 80423 107045 . + . FI_gene_label "AGK^ENSG00000006530.18" ; ID "VPS13B--AGK^AGK^ENSG00000006530.18" ; exon_id "ENSE00003471481.1" ; exon_number 2 ; gene_id "VPS13B--AGK^AGK^ENSG00000006530.18" ; gene_name AGK ; gene_type protein_coding ; havana_gene "OTTHUMG00000157499.2" ; havana_transcript "OTTHUMT00000348970.1" ; hgnc_id "HGNC:21869" ; level 2 ; orig_coord_info "chr7,141555555,141555567,+" ; protein_id "ENSP00000420776.1" ; tag dotter_confirmed basic ; transcript_id "VPS13B--AGK^ENST00000473247.5" ; transcript_name "AGK-202" ; transcript_support_level 5 ; transcript_type protein_coding
VPS13B--AGK HAVANA mRNA 80423 107045 . + . FI_gene_label "AGK^ENSG00000006530.18" ; ID "VPS13B--AGK^ENST00000473247.5" ; Parent "VPS13B--AGK^AGK^ENSG00000006530.18" ; exon_id "ENSE00003471481.1" ; exon_number 2 ; gene_id "VPS13B--AGK^AGK^ENSG00000006530.18" ; gene_name AGK ; gene_type protein_coding ; havana_gene "OTTHUMG00000157499.2" ; havana_transcript "OTTHUMT00000348970.1" ; hgnc_id "HGNC:21869" ; level 2 ; orig_coord_info "chr7,141555555,141555567,+" ; protein_id "ENSP00000420776.1" ; tag dotter_confirmed basic ; transcript_id "VPS13B--AGK^ENST00000473247.5" ; transcript_name "AGK-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
VTA1--HSF2 HAVANA gene 1096 9308 . + . FI_gene_label "VTA1^ENSG00000009844.16" ; ID "VTA1--HSF2^VTA1^ENSG00000009844.16" ; exon_id "ENSE00001336810.5" ; exon_number 1 ; gene_id "VTA1--HSF2^VTA1^ENSG00000009844.16" ; gene_name VTA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015707.4" ; havana_transcript "OTTHUMT00000042484.1" ; hgnc_id "HGNC:20954" ; level 2 ; orig_coord_info "chr6,142147367,142147399,+" ; protein_id "ENSP00000356593.1" ; tag basic ; transcript_id "VTA1--HSF2^ENST00000367621.1" ; transcript_name "VTA1-201" ; transcript_support_level 5 ; transcript_type protein_coding
VTA1--HSF2 HAVANA mRNA 1096 9308 . + . FI_gene_label "VTA1^ENSG00000009844.16" ; ID "VTA1--HSF2^ENST00000367621.1" ; Parent "VTA1--HSF2^VTA1^ENSG00000009844.16" ; exon_id "ENSE00001336810.5" ; exon_number 1 ; gene_id "VTA1--HSF2^VTA1^ENSG00000009844.16" ; gene_name VTA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015707.4" ; havana_transcript "OTTHUMT00000042484.1" ; hgnc_id "HGNC:20954" ; level 2 ; orig_coord_info "chr6,142147367,142147399,+" ; protein_id "ENSP00000356593.1" ; tag basic ; transcript_id "VTA1--HSF2^ENST00000367621.1" ; transcript_name "VTA1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
VTA1--HSF2 HAVANA gene 18028 29895 . + . FI_gene_label "HSF2^ENSG00000025156.13" ; ID "VTA1--HSF2^HSF2^ENSG00000025156.13" ; ccdsid "CCDS5124.1" ; exon_id "ENSE00001907343.2" ; exon_number 1 ; gene_id "VTA1--HSF2^HSF2^ENSG00000025156.13" ; gene_name HSF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016216.4" ; havana_transcript "OTTHUMT00000043520.2" ; hgnc_id "HGNC:5225" ; level 2 ; orig_coord_info "chr6,122399738,122399830,+" ; protein_id "ENSP00000357440.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VTA1--HSF2^ENST00000368455.9" ; transcript_name "HSF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
VTA1--HSF2 HAVANA mRNA 18028 29895 . + . FI_gene_label "HSF2^ENSG00000025156.13" ; ID "VTA1--HSF2^ENST00000368455.9" ; Parent "VTA1--HSF2^HSF2^ENSG00000025156.13" ; ccdsid "CCDS5124.1" ; exon_id "ENSE00001907343.2" ; exon_number 1 ; gene_id "VTA1--HSF2^HSF2^ENSG00000025156.13" ; gene_name HSF2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016216.4" ; havana_transcript "OTTHUMT00000043520.2" ; hgnc_id "HGNC:5225" ; level 2 ; orig_coord_info "chr6,122399738,122399830,+" ; protein_id "ENSP00000357440.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "VTA1--HSF2^ENST00000368455.9" ; transcript_name "HSF2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WWTR1--C21orf91-OT1 HAVANA gene 10616 24379 . + . FI_gene_label "WWTR1^ENSG00000018408.15" ; ID "WWTR1--C21orf91-OT1^WWTR1^ENSG00000018408.15" ; ccdsid "CCDS3144.1" ; exon_id "ENSE00001078038.4" ; exon_number 2 ; gene_id "WWTR1--C21orf91-OT1^WWTR1^ENSG00000018408.15" ; gene_name WWTR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159614.13" ; havana_transcript "OTTHUMT00000356501.1" ; hgnc_id "HGNC:24042" ; level 2 ; orig_coord_info "chr3,149656876,149657306,-" ; protein_id "ENSP00000353847.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "WWTR1--C21orf91-OT1^ENST00000360632.8" ; transcript_name "WWTR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
WWTR1--C21orf91-OT1 HAVANA mRNA 10616 24379 . + . FI_gene_label "WWTR1^ENSG00000018408.15" ; ID "WWTR1--C21orf91-OT1^ENST00000360632.8" ; Parent "WWTR1--C21orf91-OT1^WWTR1^ENSG00000018408.15" ; ccdsid "CCDS3144.1" ; exon_id "ENSE00001078038.4" ; exon_number 2 ; gene_id "WWTR1--C21orf91-OT1^WWTR1^ENSG00000018408.15" ; gene_name WWTR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159614.13" ; havana_transcript "OTTHUMT00000356501.1" ; hgnc_id "HGNC:24042" ; level 2 ; orig_coord_info "chr3,149656876,149657306,-" ; protein_id "ENSP00000353847.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "WWTR1--C21orf91-OT1^ENST00000360632.8" ; transcript_name "WWTR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
YWHAQ--IHO1 HAVANA gene 1001 9552 . + . FI_gene_label "YWHAQ^ENSG00000134308.14" ; ID "YWHAQ--IHO1^YWHAQ^ENSG00000134308.14" ; ccdsid "CCDS1666.1" ; exon_id "ENSE00001147659.1" ; exon_number 2 ; gene_id "YWHAQ--IHO1^YWHAQ^ENSG00000134308.14" ; gene_name YWHAQ ; gene_type protein_coding ; havana_gene "OTTHUMG00000013848.7" ; havana_transcript "OTTHUMT00000038868.4" ; hgnc_id "HGNC:12854" ; level 2 ; orig_coord_info "chr2,9630159,9630452,-" ; protein_id "ENSP00000238081.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "YWHAQ--IHO1^ENST00000238081.8" ; transcript_name "YWHAQ-201" ; transcript_support_level 1 ; transcript_type protein_coding
YWHAQ--IHO1 HAVANA mRNA 1001 9552 . + . FI_gene_label "YWHAQ^ENSG00000134308.14" ; ID "YWHAQ--IHO1^ENST00000238081.8" ; Parent "YWHAQ--IHO1^YWHAQ^ENSG00000134308.14" ; ccdsid "CCDS1666.1" ; exon_id "ENSE00001147659.1" ; exon_number 2 ; gene_id "YWHAQ--IHO1^YWHAQ^ENSG00000134308.14" ; gene_name YWHAQ ; gene_type protein_coding ; havana_gene "OTTHUMG00000013848.7" ; havana_transcript "OTTHUMT00000038868.4" ; hgnc_id "HGNC:12854" ; level 2 ; orig_coord_info "chr2,9630159,9630452,-" ; protein_id "ENSP00000238081.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "YWHAQ--IHO1^ENST00000238081.8" ; transcript_name "YWHAQ-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
YWHAQ--IHO1 HAVANA gene 12553 23074 . + . FI_gene_label "IHO1^ENSG00000173421.17" ; ID "YWHAQ--IHO1^IHO1^ENSG00000173421.17" ; ccdsid "CCDS33755.2" ; exon_id "ENSE00001498333.1" ; exon_number 4 ; gene_id "YWHAQ--IHO1^IHO1^ENSG00000173421.17" ; gene_name IHO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155920.4" ; havana_transcript "OTTHUMT00000342333.2" ; hgnc_id "HGNC:27945" ; level 2 ; orig_coord_info "chr3,49211781,49211836,+" ; protein_id "ENSP00000296449.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "YWHAQ--IHO1^ENST00000296449.9" ; transcript_name "IHO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
YWHAQ--IHO1 HAVANA mRNA 12553 23074 . + . FI_gene_label "IHO1^ENSG00000173421.17" ; ID "YWHAQ--IHO1^ENST00000296449.9" ; Parent "YWHAQ--IHO1^IHO1^ENSG00000173421.17" ; ccdsid "CCDS33755.2" ; exon_id "ENSE00001498333.1" ; exon_number 4 ; gene_id "YWHAQ--IHO1^IHO1^ENSG00000173421.17" ; gene_name IHO1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155920.4" ; havana_transcript "OTTHUMT00000342333.2" ; hgnc_id "HGNC:27945" ; level 2 ; orig_coord_info "chr3,49211781,49211836,+" ; protein_id "ENSP00000296449.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "YWHAQ--IHO1^ENST00000296449.9" ; transcript_name "IHO1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF528--ZNF610 HAVANA gene 17953 27667 . + . FI_gene_label "ZNF610^ENSG00000167554.15" ; ID "ZNF528--ZNF610^ZNF610^ENSG00000167554.15" ; ccdsid "CCDS12851.1" ; exon_id "ENSE00002470175.1" ; exon_number 3 ; gene_id "ZNF528--ZNF610^ZNF610^ENSG00000167554.15" ; gene_name ZNF610 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182645.4" ; havana_transcript "OTTHUMT00000462863.1" ; hgnc_id "HGNC:26687" ; level 2 ; orig_coord_info "chr19,52349173,52349235,+" ; protein_id "ENSP00000324441.8" ; tag basic appris_principal_2 CCDS ; transcript_id "ZNF528--ZNF610^ENST00000321287.12" ; transcript_name "ZNF610-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF528--ZNF610 HAVANA mRNA 17953 27667 . + . FI_gene_label "ZNF610^ENSG00000167554.15" ; ID "ZNF528--ZNF610^ENST00000321287.12" ; Parent "ZNF528--ZNF610^ZNF610^ENSG00000167554.15" ; ccdsid "CCDS12851.1" ; exon_id "ENSE00002470175.1" ; exon_number 3 ; gene_id "ZNF528--ZNF610^ZNF610^ENSG00000167554.15" ; gene_name ZNF610 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182645.4" ; havana_transcript "OTTHUMT00000462863.1" ; hgnc_id "HGNC:26687" ; level 2 ; orig_coord_info "chr19,52349173,52349235,+" ; protein_id "ENSP00000324441.8" ; tag basic appris_principal_2 CCDS ; transcript_id "ZNF528--ZNF610^ENST00000321287.12" ; transcript_name "ZNF610-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF528--ZNF610 HAVANA gene 1001 14939 . + . FI_gene_label "ZNF528^ENSG00000167555.14" ; ID "ZNF528--ZNF610^ZNF528^ENSG00000167555.14" ; ccdsid "CCDS33091.1" ; exon_id "ENSE00003647276.1" ; exon_number 4 ; gene_id "ZNF528--ZNF610^ZNF528^ENSG00000167555.14" ; gene_name ZNF528 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156494.9" ; havana_transcript "OTTHUMT00000344336.2" ; hgnc_id "HGNC:29384" ; level 2 ; orig_coord_info "chr19,52402014,52402028,+" ; protein_id "ENSP00000353652.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF528--ZNF610^ENST00000360465.8" ; transcript_name "ZNF528-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF528--ZNF610 HAVANA mRNA 1001 14939 . + . FI_gene_label "ZNF528^ENSG00000167555.14" ; ID "ZNF528--ZNF610^ENST00000360465.8" ; Parent "ZNF528--ZNF610^ZNF528^ENSG00000167555.14" ; ccdsid "CCDS33091.1" ; exon_id "ENSE00003647276.1" ; exon_number 4 ; gene_id "ZNF528--ZNF610^ZNF528^ENSG00000167555.14" ; gene_name ZNF528 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156494.9" ; havana_transcript "OTTHUMT00000344336.2" ; hgnc_id "HGNC:29384" ; level 2 ; orig_coord_info "chr19,52402014,52402028,+" ; protein_id "ENSP00000353652.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF528--ZNF610^ENST00000360465.8" ; transcript_name "ZNF528-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF528--ZNF880 HAVANA gene 17973 21182 . + . FI_gene_label "ZNF880^ENSG00000221923.9" ; ID "ZNF528--ZNF880^ZNF880^ENSG00000221923.9" ; exon_id "ENSE00001665096.1" ; exon_number 1 ; gene_id "ZNF528--ZNF880^ZNF880^ENSG00000221923.9" ; gene_name ZNF880 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167972.3" ; havana_transcript "OTTHUMT00000397373.1" ; hgnc_id "HGNC:37249" ; level 2 ; orig_coord_info "chr19,52369966,52369977,+" ; protein_id "ENSP00000343625.5" ; tag basic ; transcript_id "ZNF528--ZNF880^ENST00000344085.9" ; transcript_name "ZNF880-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF528--ZNF880 HAVANA mRNA 17973 21182 . + . FI_gene_label "ZNF880^ENSG00000221923.9" ; ID "ZNF528--ZNF880^ENST00000344085.9" ; Parent "ZNF528--ZNF880^ZNF880^ENSG00000221923.9" ; exon_id "ENSE00001665096.1" ; exon_number 1 ; gene_id "ZNF528--ZNF880^ZNF880^ENSG00000221923.9" ; gene_name ZNF880 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167972.3" ; havana_transcript "OTTHUMT00000397373.1" ; hgnc_id "HGNC:37249" ; level 2 ; orig_coord_info "chr19,52369966,52369977,+" ; protein_id "ENSP00000343625.5" ; tag basic ; transcript_id "ZNF528--ZNF880^ENST00000344085.9" ; transcript_name "ZNF880-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF528--ZNF880 HAVANA gene 1001 14939 . + . FI_gene_label "ZNF528^ENSG00000167555.14" ; ID "ZNF528--ZNF880^ZNF528^ENSG00000167555.14" ; ccdsid "CCDS33091.1" ; exon_id "ENSE00003647276.1" ; exon_number 4 ; gene_id "ZNF528--ZNF880^ZNF528^ENSG00000167555.14" ; gene_name ZNF528 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156494.9" ; havana_transcript "OTTHUMT00000344336.2" ; hgnc_id "HGNC:29384" ; level 2 ; orig_coord_info "chr19,52402014,52402028,+" ; protein_id "ENSP00000353652.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF528--ZNF880^ENST00000360465.8" ; transcript_name "ZNF528-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF528--ZNF880 HAVANA mRNA 1001 14939 . + . FI_gene_label "ZNF528^ENSG00000167555.14" ; ID "ZNF528--ZNF880^ENST00000360465.8" ; Parent "ZNF528--ZNF880^ZNF528^ENSG00000167555.14" ; ccdsid "CCDS33091.1" ; exon_id "ENSE00003647276.1" ; exon_number 4 ; gene_id "ZNF528--ZNF880^ZNF528^ENSG00000167555.14" ; gene_name ZNF528 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156494.9" ; havana_transcript "OTTHUMT00000344336.2" ; hgnc_id "HGNC:29384" ; level 2 ; orig_coord_info "chr19,52402014,52402028,+" ; protein_id "ENSP00000353652.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF528--ZNF880^ENST00000360465.8" ; transcript_name "ZNF528-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF626--FARP2 HAVANA gene 13570 55273 . + . FI_gene_label "FARP2^ENSG00000006607.14" ; ID "ZNF626--FARP2^FARP2^ENSG00000006607.14" ; ccdsid "CCDS33424.1" ; exon_id "ENSE00003499239.1" ; exon_number 2 ; gene_id "ZNF626--FARP2^FARP2^ENSG00000006607.14" ; gene_name FARP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151574.5" ; havana_transcript "OTTHUMT00000323153.2" ; hgnc_id "HGNC:16460" ; level 2 ; orig_coord_info "chr2,241373108,241373290,+" ; protein_id "ENSP00000264042.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF626--FARP2^ENST00000264042.8" ; transcript_name "FARP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF626--FARP2 HAVANA mRNA 13570 55273 . + . FI_gene_label "FARP2^ENSG00000006607.14" ; ID "ZNF626--FARP2^ENST00000264042.8" ; Parent "ZNF626--FARP2^FARP2^ENSG00000006607.14" ; ccdsid "CCDS33424.1" ; exon_id "ENSE00003499239.1" ; exon_number 2 ; gene_id "ZNF626--FARP2^FARP2^ENSG00000006607.14" ; gene_name FARP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151574.5" ; havana_transcript "OTTHUMT00000323153.2" ; hgnc_id "HGNC:16460" ; level 2 ; orig_coord_info "chr2,241373108,241373290,+" ; protein_id "ENSP00000264042.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF626--FARP2^ENST00000264042.8" ; transcript_name "FARP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF626--FARP2 HAVANA gene 1001 3857 . + . FI_gene_label "ZNF626^ENSG00000188171.16" ; ID "ZNF626--FARP2^ZNF626^ENSG00000188171.16" ; ccdsid "CCDS32976.1" ; exon_id "ENSE00001511350.1" ; exon_number 1 ; gene_id "ZNF626--FARP2^ZNF626^ENSG00000188171.16" ; gene_name ZNF626 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179733.6" ; havana_transcript "OTTHUMT00000447846.1" ; hgnc_id "HGNC:30461" ; level 2 ; orig_coord_info "chr19,20661444,20661446,-" ; protein_id "ENSP00000291750.6" ; tag basic CCDS ; transcript_id "ZNF626--FARP2^ENST00000291750.6" ; transcript_name "ZNF626-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF626--FARP2 HAVANA mRNA 1001 3857 . + . FI_gene_label "ZNF626^ENSG00000188171.16" ; ID "ZNF626--FARP2^ENST00000291750.6" ; Parent "ZNF626--FARP2^ZNF626^ENSG00000188171.16" ; ccdsid "CCDS32976.1" ; exon_id "ENSE00001511350.1" ; exon_number 1 ; gene_id "ZNF626--FARP2^ZNF626^ENSG00000188171.16" ; gene_name ZNF626 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179733.6" ; havana_transcript "OTTHUMT00000447846.1" ; hgnc_id "HGNC:30461" ; level 2 ; orig_coord_info "chr19,20661444,20661446,-" ; protein_id "ENSP00000291750.6" ; tag basic CCDS ; transcript_id "ZNF626--FARP2^ENST00000291750.6" ; transcript_name "ZNF626-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AHCYL1--AL359258.1 HAVANA gene 19871 23351 . + . FI_gene_label "AL359258.1^ENSG00000238122.1" ; ID "AHCYL1--AL359258.1^AL359258.1^ENSG00000238122.1" ; exon_id "ENSE00001674505.1" ; exon_number 1 ; gene_id "AHCYL1--AL359258.1^AL359258.1^ENSG00000238122.1" ; gene_name "AL359258.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000011319.2" ; havana_transcript "OTTHUMT00000031256.2" ; level 2 ; orig_coord_info "chr1,108272804,108273689,-" ; tag basic ; transcript_id "AHCYL1--AL359258.1^ENST00000438965.1" ; transcript_name "AL359258.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
AHCYL1--AL359258.1 HAVANA RNA 19871 23351 . + . FI_gene_label "AL359258.1^ENSG00000238122.1" ; ID "AHCYL1--AL359258.1^ENST00000438965.1" ; Parent "AHCYL1--AL359258.1^AL359258.1^ENSG00000238122.1" ; exon_id "ENSE00001674505.1" ; exon_number 1 ; gene_id "AHCYL1--AL359258.1^AL359258.1^ENSG00000238122.1" ; gene_name "AL359258.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000011319.2" ; havana_transcript "OTTHUMT00000031256.2" ; level 2 ; orig_coord_info "chr1,108272804,108273689,-" ; tag basic ; transcript_id "AHCYL1--AL359258.1^ENST00000438965.1" ; transcript_name "AL359258.1-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
ARFGEF2--RNA5SP486 ENSEMBL gene 46858 46940 . + . FI_gene_label "RNA5SP486^ENSG00000251770.1" ; ID "ARFGEF2--RNA5SP486^RNA5SP486^ENSG00000251770.1" ; exon_id "ENSE00002088238.1" ; exon_number 1 ; gene_id "ARFGEF2--RNA5SP486^RNA5SP486^ENSG00000251770.1" ; gene_name RNA5SP486 ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:43386" ; level 3 ; orig_coord_info "chr20,47873191,47873273,+" ; tag basic ; transcript_id "ARFGEF2--RNA5SP486^ENST00000515961.1" ; transcript_name "RNA5SP486-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
ARFGEF2--RNA5SP486 ENSEMBL RNA 46858 46940 . + . FI_gene_label "RNA5SP486^ENSG00000251770.1" ; ID "ARFGEF2--RNA5SP486^ENST00000515961.1" ; Parent "ARFGEF2--RNA5SP486^RNA5SP486^ENSG00000251770.1" ; exon_id "ENSE00002088238.1" ; exon_number 1 ; gene_id "ARFGEF2--RNA5SP486^RNA5SP486^ENSG00000251770.1" ; gene_name RNA5SP486 ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:43386" ; level 3 ; orig_coord_info "chr20,47873191,47873273,+" ; tag basic ; transcript_id "ARFGEF2--RNA5SP486^ENST00000515961.1" ; transcript_name "RNA5SP486-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
L1 and L2 created:
ARFGEF2--RNU7-173P ENSEMBL gene 46858 46933 . + . FI_gene_label "RNU7-173P^ENSG00000238950.1" ; ID "ARFGEF2--RNU7-173P^RNU7-173P^ENSG00000238950.1" ; exon_id "ENSE00001808362.1" ; exon_number 1 ; gene_id "ARFGEF2--RNU7-173P^RNU7-173P^ENSG00000238950.1" ; gene_name "RNU7-173P" ; gene_type snRNA ; hgnc_id "HGNC:45707" ; level 3 ; orig_coord_info "chr20,47826969,47827044,-" ; tag basic ; transcript_id "ARFGEF2--RNU7-173P^ENST00000458903.1" ; transcript_name "RNU7-173P-201" ; transcript_support_level NA ; transcript_type snRNA
ARFGEF2--RNU7-173P ENSEMBL RNA 46858 46933 . + . FI_gene_label "RNU7-173P^ENSG00000238950.1" ; ID "ARFGEF2--RNU7-173P^ENST00000458903.1" ; Parent "ARFGEF2--RNU7-173P^RNU7-173P^ENSG00000238950.1" ; exon_id "ENSE00001808362.1" ; exon_number 1 ; gene_id "ARFGEF2--RNU7-173P^RNU7-173P^ENSG00000238950.1" ; gene_name "RNU7-173P" ; gene_type snRNA ; hgnc_id "HGNC:45707" ; level 3 ; orig_coord_info "chr20,47826969,47827044,-" ; tag basic ; transcript_id "ARFGEF2--RNU7-173P^ENST00000458903.1" ; transcript_name "RNU7-173P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
ARFGEF2--RNU7-92P ENSEMBL gene 46858 46933 . + . FI_gene_label "RNU7-92P^ENSG00000238785.1" ; ID "ARFGEF2--RNU7-92P^RNU7-92P^ENSG00000238785.1" ; exon_id "ENSE00001808580.1" ; exon_number 1 ; gene_id "ARFGEF2--RNU7-92P^RNU7-92P^ENSG00000238785.1" ; gene_name "RNU7-92P" ; gene_type snRNA ; hgnc_id "HGNC:45626" ; level 3 ; orig_coord_info "chr20,47904348,47904423,+" ; tag basic ; transcript_id "ARFGEF2--RNU7-92P^ENST00000458830.1" ; transcript_name "RNU7-92P-201" ; transcript_support_level NA ; transcript_type snRNA
ARFGEF2--RNU7-92P ENSEMBL RNA 46858 46933 . + . FI_gene_label "RNU7-92P^ENSG00000238785.1" ; ID "ARFGEF2--RNU7-92P^ENST00000458830.1" ; Parent "ARFGEF2--RNU7-92P^RNU7-92P^ENSG00000238785.1" ; exon_id "ENSE00001808580.1" ; exon_number 1 ; gene_id "ARFGEF2--RNU7-92P^RNU7-92P^ENSG00000238785.1" ; gene_name "RNU7-92P" ; gene_type snRNA ; hgnc_id "HGNC:45626" ; level 3 ; orig_coord_info "chr20,47904348,47904423,+" ; tag basic ; transcript_id "ARFGEF2--RNU7-92P^ENST00000458830.1" ; transcript_name "RNU7-92P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
ARFGEF2--SRMP1 HAVANA gene 46858 47742 . + . FI_gene_label "SRMP1^ENSG00000215448.3" ; ID "ARFGEF2--SRMP1^SRMP1^ENSG00000215448.3" ; exon_id "ENSE00001535779.2" ; exon_number 1 ; gene_id "ARFGEF2--SRMP1^SRMP1^ENSG00000215448.3" ; gene_name SRMP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000032673.1" ; havana_transcript "OTTHUMT00000079604.1" ; hgnc_id "HGNC:16552" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr20,47859788,47860672,+" ; tag pseudo_consens basic ; transcript_id "ARFGEF2--SRMP1^ENST00000398959.2" ; transcript_name "SRMP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
ARFGEF2--SRMP1 HAVANA RNA 46858 47742 . + . FI_gene_label "SRMP1^ENSG00000215448.3" ; ID "ARFGEF2--SRMP1^ENST00000398959.2" ; Parent "ARFGEF2--SRMP1^SRMP1^ENSG00000215448.3" ; exon_id "ENSE00001535779.2" ; exon_number 1 ; gene_id "ARFGEF2--SRMP1^SRMP1^ENSG00000215448.3" ; gene_name SRMP1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000032673.1" ; havana_transcript "OTTHUMT00000079604.1" ; hgnc_id "HGNC:16552" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr20,47859788,47860672,+" ; tag pseudo_consens basic ; transcript_id "ARFGEF2--SRMP1^ENST00000398959.2" ; transcript_name "SRMP1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
BAZ2B--LINC02478 HAVANA gene 61202 65240 . + . FI_gene_label "LINC02478^ENSG00000285373.2" ; ID "BAZ2B--LINC02478^LINC02478^ENSG00000285373.2" ; exon_id "ENSE00001845835.1" ; exon_number 1 ; gene_id "BAZ2B--LINC02478^LINC02478^ENSG00000285373.2" ; gene_name LINC02478 ; gene_type lncRNA ; havana_gene "OTTHUMG00000192422.3" ; havana_transcript "OTTHUMT00000494017.1" ; hgnc_id "HGNC:53446" ; level 2 ; orig_coord_info "chr2,160271720,160271880,-" ; tag CAGE_supported_TSS ; transcript_id "BAZ2B--LINC02478^ENST00000459712.1" ; transcript_name "LINC02478-201" ; transcript_support_level 2 ; transcript_type lncRNA
BAZ2B--LINC02478 HAVANA RNA 61202 65240 . + . FI_gene_label "LINC02478^ENSG00000285373.2" ; ID "BAZ2B--LINC02478^ENST00000459712.1" ; Parent "BAZ2B--LINC02478^LINC02478^ENSG00000285373.2" ; exon_id "ENSE00001845835.1" ; exon_number 1 ; gene_id "BAZ2B--LINC02478^LINC02478^ENSG00000285373.2" ; gene_name LINC02478 ; gene_type lncRNA ; havana_gene "OTTHUMG00000192422.3" ; havana_transcript "OTTHUMT00000494017.1" ; hgnc_id "HGNC:53446" ; level 2 ; orig_coord_info "chr2,160271720,160271880,-" ; tag CAGE_supported_TSS ; transcript_id "BAZ2B--LINC02478^ENST00000459712.1" ; transcript_name "LINC02478-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
BMS1P2--PTPN20 HAVANA gene 1036 8938 . + . FI_gene_label "BMS1P2^ENSG00000251079.6" ; ID "BMS1P2--PTPN20^BMS1P2^ENSG00000251079.6" ; exon_id "ENSE00002160010.1" ; exon_number 1 ; gene_id "BMS1P2--PTPN20^BMS1P2^ENSG00000251079.6" ; gene_name BMS1P2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018113.3" ; havana_transcript "OTTHUMT00000047842.3" ; hgnc_id "HGNC:23650" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,47551744,47551919,-" ; tag basic ; transcript_id "BMS1P2--PTPN20^ENST00000450360.2" ; transcript_name "BMS1P2-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
BMS1P2--PTPN20 HAVANA RNA 1036 8938 . + . FI_gene_label "BMS1P2^ENSG00000251079.6" ; ID "BMS1P2--PTPN20^ENST00000450360.2" ; Parent "BMS1P2--PTPN20^BMS1P2^ENSG00000251079.6" ; exon_id "ENSE00002160010.1" ; exon_number 1 ; gene_id "BMS1P2--PTPN20^BMS1P2^ENSG00000251079.6" ; gene_name BMS1P2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018113.3" ; havana_transcript "OTTHUMT00000047842.3" ; hgnc_id "HGNC:23650" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,47551744,47551919,-" ; tag basic ; transcript_id "BMS1P2--PTPN20^ENST00000450360.2" ; transcript_name "BMS1P2-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
C19orf48--KLK13 HAVANA gene 1335 6785 . + . FI_gene_label "C19orf48^ENSG00000167747.15" ; ID "C19orf48--KLK13^C19orf48^ENSG00000167747.15" ; exon_id "ENSE00003041107.1" ; exon_number 1 ; gene_id "C19orf48--KLK13^C19orf48^ENSG00000167747.15" ; gene_name C19orf48 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000182875.4" ; havana_transcript "OTTHUMT00000464128.2" ; hgnc_id "HGNC:29667" ; level 2 ; orig_coord_info "chr19,50804572,50804595,-" ; transcript_id "C19orf48--KLK13^ENST00000593287.5" ; transcript_name "C19orf48-201" ; transcript_support_level 5 ; transcript_type processed_transcript
C19orf48--KLK13 HAVANA RNA 1335 6785 . + . FI_gene_label "C19orf48^ENSG00000167747.15" ; ID "C19orf48--KLK13^ENST00000593287.5" ; Parent "C19orf48--KLK13^C19orf48^ENSG00000167747.15" ; exon_id "ENSE00003041107.1" ; exon_number 1 ; gene_id "C19orf48--KLK13^C19orf48^ENSG00000167747.15" ; gene_name C19orf48 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000182875.4" ; havana_transcript "OTTHUMT00000464128.2" ; hgnc_id "HGNC:29667" ; level 2 ; orig_coord_info "chr19,50804572,50804595,-" ; transcript_id "C19orf48--KLK13^ENST00000593287.5" ; transcript_name "C19orf48-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
GRB10--AC079801.1 HAVANA gene 40638 42025 . + . FI_gene_label "AC079801.1^ENSG00000279669.1" ; ID "GRB10--AC079801.1^AC079801.1^ENSG00000279669.1" ; exon_id "ENSE00003756545.1" ; exon_number 1 ; gene_id "GRB10--AC079801.1^AC079801.1^ENSG00000279669.1" ; gene_name "AC079801.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189363.1" ; havana_transcript "OTTHUMT00000479450.1" ; level 2 ; orig_coord_info "chr21,5243703,5243833,-" ; tag basic ; transcript_id "GRB10--AC079801.1^ENST00000623753.1" ; transcript_name "AC079801.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
GRB10--AC079801.1 HAVANA RNA 40638 42025 . + . FI_gene_label "AC079801.1^ENSG00000279669.1" ; ID "GRB10--AC079801.1^ENST00000623753.1" ; Parent "GRB10--AC079801.1^AC079801.1^ENSG00000279669.1" ; exon_id "ENSE00003756545.1" ; exon_number 1 ; gene_id "GRB10--AC079801.1^AC079801.1^ENSG00000279669.1" ; gene_name "AC079801.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189363.1" ; havana_transcript "OTTHUMT00000479450.1" ; level 2 ; orig_coord_info "chr21,5243703,5243833,-" ; tag basic ; transcript_id "GRB10--AC079801.1^ENST00000623753.1" ; transcript_name "AC079801.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
GRB10--LINC01670 HAVANA gene 40683 42356 . + . FI_gene_label "LINC01670^ENSG00000279094.3" ; ID "GRB10--LINC01670^LINC01670^ENSG00000279094.3" ; exon_id "ENSE00003759427.1" ; exon_number 1 ; gene_id "GRB10--LINC01670^LINC01670^ENSG00000279094.3" ; gene_name LINC01670 ; gene_type lncRNA ; havana_gene "OTTHUMG00000189365.2" ; havana_transcript "OTTHUMT00000479453.1" ; hgnc_id "HGNC:52458" ; level 2 ; orig_coord_info "chr21,5502369,5502497,-" ; transcript_id "GRB10--LINC01670^ENST00000623227.1" ; transcript_name "LINC01670-201" ; transcript_support_level 2 ; transcript_type lncRNA
GRB10--LINC01670 HAVANA RNA 40683 42356 . + . FI_gene_label "LINC01670^ENSG00000279094.3" ; ID "GRB10--LINC01670^ENST00000623227.1" ; Parent "GRB10--LINC01670^LINC01670^ENSG00000279094.3" ; exon_id "ENSE00003759427.1" ; exon_number 1 ; gene_id "GRB10--LINC01670^LINC01670^ENSG00000279094.3" ; gene_name LINC01670 ; gene_type lncRNA ; havana_gene "OTTHUMG00000189365.2" ; havana_transcript "OTTHUMT00000479453.1" ; hgnc_id "HGNC:52458" ; level 2 ; orig_coord_info "chr21,5502369,5502497,-" ; transcript_id "GRB10--LINC01670^ENST00000623227.1" ; transcript_name "LINC01670-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
GTF2H2C--AC010267.1 HAVANA gene 23189 25741 . + . FI_gene_label "AC010267.1^ENSG00000249150.2" ; ID "GTF2H2C--AC010267.1^AC010267.1^ENSG00000249150.2" ; exon_id "ENSE00002068765.1" ; exon_number 1 ; gene_id "GTF2H2C--AC010267.1^AC010267.1^ENSG00000249150.2" ; gene_name "AC010267.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000162884.2" ; havana_transcript "OTTHUMT00000370937.1" ; level 2 ; orig_coord_info "chr5,116830125,116830187,-" ; transcript_id "GTF2H2C--AC010267.1^ENST00000508636.1" ; transcript_name "AC010267.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
GTF2H2C--AC010267.1 HAVANA RNA 23189 25741 . + . FI_gene_label "AC010267.1^ENSG00000249150.2" ; ID "GTF2H2C--AC010267.1^ENST00000508636.1" ; Parent "GTF2H2C--AC010267.1^AC010267.1^ENSG00000249150.2" ; exon_id "ENSE00002068765.1" ; exon_number 1 ; gene_id "GTF2H2C--AC010267.1^AC010267.1^ENSG00000249150.2" ; gene_name "AC010267.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000162884.2" ; havana_transcript "OTTHUMT00000370937.1" ; level 2 ; orig_coord_info "chr5,116830125,116830187,-" ; transcript_id "GTF2H2C--AC010267.1^ENST00000508636.1" ; transcript_name "AC010267.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
GTF2H2C--AC093534.1 HAVANA gene 23006 23137 . + . FI_gene_label "AC093534.1^ENSG00000250650.1" ; ID "GTF2H2C--AC093534.1^AC093534.1^ENSG00000250650.1" ; exon_id "ENSE00002061873.1" ; exon_number 1 ; gene_id "GTF2H2C--AC093534.1^AC093534.1^ENSG00000250650.1" ; gene_name "AC093534.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000162880.1" ; havana_transcript "OTTHUMT00000370933.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr5,117019548,117019679,-" ; tag basic ; transcript_id "GTF2H2C--AC093534.1^ENST00000504977.1" ; transcript_name "AC093534.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
GTF2H2C--AC093534.1 HAVANA RNA 23006 23137 . + . FI_gene_label "AC093534.1^ENSG00000250650.1" ; ID "GTF2H2C--AC093534.1^ENST00000504977.1" ; Parent "GTF2H2C--AC093534.1^AC093534.1^ENSG00000250650.1" ; exon_id "ENSE00002061873.1" ; exon_number 1 ; gene_id "GTF2H2C--AC093534.1^AC093534.1^ENSG00000250650.1" ; gene_name "AC093534.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000162880.1" ; havana_transcript "OTTHUMT00000370933.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr5,117019548,117019679,-" ; tag basic ; transcript_id "GTF2H2C--AC093534.1^ENST00000504977.1" ; transcript_name "AC093534.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
KDM5C--PCAT1 HAVANA gene 27102 30744 . + . FI_gene_label "PCAT1^ENSG00000253438.4" ; ID "KDM5C--PCAT1^PCAT1^ENSG00000253438.4" ; exon_id "ENSE00002094284.1" ; exon_number 1 ; gene_id "KDM5C--PCAT1^PCAT1^ENSG00000253438.4" ; gene_name PCAT1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000165067.7" ; havana_transcript "OTTHUMT00000381546.1" ; hgnc_id "HGNC:43022" ; level 2 ; orig_coord_info "chr8,126557886,126557931,+" ; transcript_id "KDM5C--PCAT1^ENST00000517773.5" ; transcript_name "PCAT1-201" ; transcript_support_level 3 ; transcript_type lncRNA
KDM5C--PCAT1 HAVANA RNA 27102 30744 . + . FI_gene_label "PCAT1^ENSG00000253438.4" ; ID "KDM5C--PCAT1^ENST00000517773.5" ; Parent "KDM5C--PCAT1^PCAT1^ENSG00000253438.4" ; exon_id "ENSE00002094284.1" ; exon_number 1 ; gene_id "KDM5C--PCAT1^PCAT1^ENSG00000253438.4" ; gene_name PCAT1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000165067.7" ; havana_transcript "OTTHUMT00000381546.1" ; hgnc_id "HGNC:43022" ; level 2 ; orig_coord_info "chr8,126557886,126557931,+" ; transcript_id "KDM5C--PCAT1^ENST00000517773.5" ; transcript_name "PCAT1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
KLF11--AC009315.1 HAVANA gene 12430 18973 . + . FI_gene_label "AC009315.1^ENSG00000286797.1" ; ID "KLF11--AC009315.1^AC009315.1^ENSG00000286797.1" ; exon_id "ENSE00003876496.1" ; exon_number 1 ; gene_id "KLF11--AC009315.1^AC009315.1^ENSG00000286797.1" ; gene_name "AC009315.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195848.1" ; havana_transcript "OTTHUMT00000529037.1" ; level 2 ; orig_coord_info "chr2,185425063,185425507,+" ; tag TAGENE ; transcript_id "KLF11--AC009315.1^ENST00000655441.1" ; transcript_name "AC009315.1-201" ; transcript_type lncRNA
KLF11--AC009315.1 HAVANA RNA 12430 18973 . + . FI_gene_label "AC009315.1^ENSG00000286797.1" ; ID "KLF11--AC009315.1^ENST00000655441.1" ; Parent "KLF11--AC009315.1^AC009315.1^ENSG00000286797.1" ; exon_id "ENSE00003876496.1" ; exon_number 1 ; gene_id "KLF11--AC009315.1^AC009315.1^ENSG00000286797.1" ; gene_name "AC009315.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195848.1" ; havana_transcript "OTTHUMT00000529037.1" ; level 2 ; orig_coord_info "chr2,185425063,185425507,+" ; tag TAGENE ; transcript_id "KLF11--AC009315.1^ENST00000655441.1" ; transcript_name "AC009315.1-201" ; transcript_type lncRNA
L1 and L2 created:
LDHA--AP001102.1 HAVANA gene 15948 16356 . + . FI_gene_label "AP001102.1^ENSG00000213287.3" ; ID "LDHA--AP001102.1^AP001102.1^ENSG00000213287.3" ; exon_id "ENSE00002184593.1" ; exon_number 1 ; gene_id "LDHA--AP001102.1^AP001102.1^ENSG00000213287.3" ; gene_name "AP001102.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000167236.1" ; havana_transcript "OTTHUMT00000393824.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,87258851,87259259,-" ; tag pseudo_consens basic ; transcript_id "LDHA--AP001102.1^ENST00000528959.1" ; transcript_name "AP001102.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
LDHA--AP001102.1 HAVANA RNA 15948 16356 . + . FI_gene_label "AP001102.1^ENSG00000213287.3" ; ID "LDHA--AP001102.1^ENST00000528959.1" ; Parent "LDHA--AP001102.1^AP001102.1^ENSG00000213287.3" ; exon_id "ENSE00002184593.1" ; exon_number 1 ; gene_id "LDHA--AP001102.1^AP001102.1^ENSG00000213287.3" ; gene_name "AP001102.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000167236.1" ; havana_transcript "OTTHUMT00000393824.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr11,87258851,87259259,-" ; tag pseudo_consens basic ; transcript_id "LDHA--AP001102.1^ENST00000528959.1" ; transcript_name "AP001102.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
MARK4--CDRT15P9 HAVANA gene 23561 24069 . + . FI_gene_label "CDRT15P9^ENSG00000279414.1" ; ID "MARK4--CDRT15P9^CDRT15P9^ENSG00000279414.1" ; exon_id "ENSE00003757896.1" ; exon_number 1 ; gene_id "MARK4--CDRT15P9^CDRT15P9^ENSG00000279414.1" ; gene_name CDRT15P9 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000189479.1" ; havana_transcript "OTTHUMT00000479773.1" ; hgnc_id "HGNC:54917" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr21,9026821,9027329,-" ; tag basic ; transcript_id "MARK4--CDRT15P9^ENST00000623182.1" ; transcript_name "CDRT15P9-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
MARK4--CDRT15P9 HAVANA RNA 23561 24069 . + . FI_gene_label "CDRT15P9^ENSG00000279414.1" ; ID "MARK4--CDRT15P9^ENST00000623182.1" ; Parent "MARK4--CDRT15P9^CDRT15P9^ENSG00000279414.1" ; exon_id "ENSE00003757896.1" ; exon_number 1 ; gene_id "MARK4--CDRT15P9^CDRT15P9^ENSG00000279414.1" ; gene_name CDRT15P9 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000189479.1" ; havana_transcript "OTTHUMT00000479773.1" ; hgnc_id "HGNC:54917" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr21,9026821,9027329,-" ; tag basic ; transcript_id "MARK4--CDRT15P9^ENST00000623182.1" ; transcript_name "CDRT15P9-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
MPND--AC104521.1 HAVANA gene 12802 14080 . + . FI_gene_label "AC104521.1^ENSG00000269425.1" ; ID "MPND--AC104521.1^AC104521.1^ENSG00000269425.1" ; exon_id "ENSE00003025683.1" ; exon_number 1 ; gene_id "MPND--AC104521.1^AC104521.1^ENSG00000269425.1" ; gene_name "AC104521.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000181964.1" ; havana_transcript "OTTHUMT00000458472.1" ; level 2 ; orig_coord_info "chr19,4339577,4339619,+" ; tag basic ; transcript_id "MPND--AC104521.1^ENST00000598582.1" ; transcript_name "AC104521.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
MPND--AC104521.1 HAVANA RNA 12802 14080 . + . FI_gene_label "AC104521.1^ENSG00000269425.1" ; ID "MPND--AC104521.1^ENST00000598582.1" ; Parent "MPND--AC104521.1^AC104521.1^ENSG00000269425.1" ; exon_id "ENSE00003025683.1" ; exon_number 1 ; gene_id "MPND--AC104521.1^AC104521.1^ENSG00000269425.1" ; gene_name "AC104521.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000181964.1" ; havana_transcript "OTTHUMT00000458472.1" ; level 2 ; orig_coord_info "chr19,4339577,4339619,+" ; tag basic ; transcript_id "MPND--AC104521.1^ENST00000598582.1" ; transcript_name "AC104521.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
MTAP--CDKN2B-AS1 HAVANA gene 30652 68565 . + . FI_gene_label "CDKN2B-AS1^ENSG00000240498.9" ; ID "MTAP--CDKN2B-AS1^CDKN2B-AS1^ENSG00000240498.9" ; exon_id "ENSE00002699013.1" ; exon_number 1 ; gene_id "MTAP--CDKN2B-AS1^CDKN2B-AS1^ENSG00000240498.9" ; gene_name "CDKN2B-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000019689.7" ; havana_transcript "OTTHUMT00000502865.1" ; hgnc_id "HGNC:34341" ; level 2 ; orig_coord_info "chr9,21995095,21995161,+" ; tag RNA_Seq_supported_only ; transcript_id "MTAP--CDKN2B-AS1^ENST00000421632.2" ; transcript_name "CDKN2B-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
MTAP--CDKN2B-AS1 HAVANA RNA 30652 68565 . + . FI_gene_label "CDKN2B-AS1^ENSG00000240498.9" ; ID "MTAP--CDKN2B-AS1^ENST00000421632.2" ; Parent "MTAP--CDKN2B-AS1^CDKN2B-AS1^ENSG00000240498.9" ; exon_id "ENSE00002699013.1" ; exon_number 1 ; gene_id "MTAP--CDKN2B-AS1^CDKN2B-AS1^ENSG00000240498.9" ; gene_name "CDKN2B-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000019689.7" ; havana_transcript "OTTHUMT00000502865.1" ; hgnc_id "HGNC:34341" ; level 2 ; orig_coord_info "chr9,21995095,21995161,+" ; tag RNA_Seq_supported_only ; transcript_id "MTAP--CDKN2B-AS1^ENST00000421632.2" ; transcript_name "CDKN2B-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
PIP4K2B--LHX1-DT HAVANA gene 19744 26655 . + . FI_gene_label "LHX1-DT^ENSG00000277268.2" ; ID "PIP4K2B--LHX1-DT^LHX1-DT^ENSG00000277268.2" ; exon_id "ENSE00003733904.1" ; exon_number 1 ; gene_id "PIP4K2B--LHX1-DT^LHX1-DT^ENSG00000277268.2" ; gene_name "LHX1-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000188447.2" ; havana_transcript "OTTHUMT00000477274.1" ; hgnc_id "HGNC:53778" ; level 2 ; orig_coord_info "chr17,36936564,36936652,-" ; tag basic ; transcript_id "PIP4K2B--LHX1-DT^ENST00000612281.1" ; transcript_name "LHX1-DT-201" ; transcript_support_level 3 ; transcript_type lncRNA
PIP4K2B--LHX1-DT HAVANA RNA 19744 26655 . + . FI_gene_label "LHX1-DT^ENSG00000277268.2" ; ID "PIP4K2B--LHX1-DT^ENST00000612281.1" ; Parent "PIP4K2B--LHX1-DT^LHX1-DT^ENSG00000277268.2" ; exon_id "ENSE00003733904.1" ; exon_number 1 ; gene_id "PIP4K2B--LHX1-DT^LHX1-DT^ENSG00000277268.2" ; gene_name "LHX1-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000188447.2" ; havana_transcript "OTTHUMT00000477274.1" ; hgnc_id "HGNC:53778" ; level 2 ; orig_coord_info "chr17,36936564,36936652,-" ; tag basic ; transcript_id "PIP4K2B--LHX1-DT^ENST00000612281.1" ; transcript_name "LHX1-DT-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
PRRG1--AL592156.1 HAVANA gene 15144 18602 . + . FI_gene_label "AL592156.1^ENSG00000286475.1" ; ID "PRRG1--AL592156.1^AL592156.1^ENSG00000286475.1" ; exon_id "ENSE00003855343.1" ; exon_number 1 ; gene_id "PRRG1--AL592156.1^AL592156.1^ENSG00000286475.1" ; gene_name "AL592156.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194650.1" ; havana_transcript "OTTHUMT00000520326.1" ; level 2 ; orig_coord_info "chrX,36866562,36866689,-" ; tag basic TAGENE ; transcript_id "PRRG1--AL592156.1^ENST00000666628.1" ; transcript_name "AL592156.1-201" ; transcript_type lncRNA
PRRG1--AL592156.1 HAVANA RNA 15144 18602 . + . FI_gene_label "AL592156.1^ENSG00000286475.1" ; ID "PRRG1--AL592156.1^ENST00000666628.1" ; Parent "PRRG1--AL592156.1^AL592156.1^ENSG00000286475.1" ; exon_id "ENSE00003855343.1" ; exon_number 1 ; gene_id "PRRG1--AL592156.1^AL592156.1^ENSG00000286475.1" ; gene_name "AL592156.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194650.1" ; havana_transcript "OTTHUMT00000520326.1" ; level 2 ; orig_coord_info "chrX,36866562,36866689,-" ; tag basic TAGENE ; transcript_id "PRRG1--AL592156.1^ENST00000666628.1" ; transcript_name "AL592156.1-201" ; transcript_type lncRNA
L1 and L2 created:
PRRG1--BX842568.3 HAVANA gene 15144 15370 . + . FI_gene_label "BX842568.3^ENSG00000235510.1" ; ID "PRRG1--BX842568.3^BX842568.3^ENSG00000235510.1" ; exon_id "ENSE00001689841.1" ; exon_number 1 ; gene_id "PRRG1--BX842568.3^BX842568.3^ENSG00000235510.1" ; gene_name "BX842568.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000024023.1" ; havana_transcript "OTTHUMT00000060506.1" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrX,36957913,36958139,+" ; tag pseudo_consens basic ; transcript_id "PRRG1--BX842568.3^ENST00000421222.1" ; transcript_name "BX842568.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
PRRG1--BX842568.3 HAVANA RNA 15144 15370 . + . FI_gene_label "BX842568.3^ENSG00000235510.1" ; ID "PRRG1--BX842568.3^ENST00000421222.1" ; Parent "PRRG1--BX842568.3^BX842568.3^ENSG00000235510.1" ; exon_id "ENSE00001689841.1" ; exon_number 1 ; gene_id "PRRG1--BX842568.3^BX842568.3^ENSG00000235510.1" ; gene_name "BX842568.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000024023.1" ; havana_transcript "OTTHUMT00000060506.1" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrX,36957913,36958139,+" ; tag pseudo_consens basic ; transcript_id "PRRG1--BX842568.3^ENST00000421222.1" ; transcript_name "BX842568.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
RNF150--AL359232.1 HAVANA gene 26334 30721 . + . FI_gene_label "AL359232.1^ENSG00000258561.2" ; ID "RNF150--AL359232.1^AL359232.1^ENSG00000258561.2" ; exon_id "ENSE00003881321.1" ; exon_number 1 ; gene_id "RNF150--AL359232.1^AL359232.1^ENSG00000258561.2" ; gene_name "AL359232.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000171191.2" ; havana_transcript "OTTHUMT00000412210.2" ; level 2 ; orig_coord_info "chr14,66507291,66507849,-" ; tag TAGENE ; transcript_id "RNF150--AL359232.1^ENST00000555377.2" ; transcript_name "AL359232.1-203" ; transcript_support_level 3 ; transcript_type lncRNA
RNF150--AL359232.1 HAVANA RNA 26334 30721 . + . FI_gene_label "AL359232.1^ENSG00000258561.2" ; ID "RNF150--AL359232.1^ENST00000555377.2" ; Parent "RNF150--AL359232.1^AL359232.1^ENSG00000258561.2" ; exon_id "ENSE00003881321.1" ; exon_number 1 ; gene_id "RNF150--AL359232.1^AL359232.1^ENSG00000258561.2" ; gene_name "AL359232.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000171191.2" ; havana_transcript "OTTHUMT00000412210.2" ; level 2 ; orig_coord_info "chr14,66507291,66507849,-" ; tag TAGENE ; transcript_id "RNF150--AL359232.1^ENST00000555377.2" ; transcript_name "AL359232.1-203" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TBCK--RNU6-173P ENSEMBL gene 46089 46192 . + . FI_gene_label "RNU6-173P^ENSG00000201085.1" ; ID "TBCK--RNU6-173P^RNU6-173P^ENSG00000201085.1" ; exon_id "ENSE00001438978.1" ; exon_number 1 ; gene_id "TBCK--RNU6-173P^RNU6-173P^ENSG00000201085.1" ; gene_name "RNU6-173P" ; gene_type snRNA ; hgnc_id "HGNC:47136" ; level 3 ; orig_coord_info "chr4,188121531,188121634,-" ; tag basic ; transcript_id "TBCK--RNU6-173P^ENST00000364215.1" ; transcript_name "RNU6-173P-201" ; transcript_support_level NA ; transcript_type snRNA
TBCK--RNU6-173P ENSEMBL RNA 46089 46192 . + . FI_gene_label "RNU6-173P^ENSG00000201085.1" ; ID "TBCK--RNU6-173P^ENST00000364215.1" ; Parent "TBCK--RNU6-173P^RNU6-173P^ENSG00000201085.1" ; exon_id "ENSE00001438978.1" ; exon_number 1 ; gene_id "TBCK--RNU6-173P^RNU6-173P^ENSG00000201085.1" ; gene_name "RNU6-173P" ; gene_type snRNA ; hgnc_id "HGNC:47136" ; level 3 ; orig_coord_info "chr4,188121531,188121634,-" ; tag basic ; transcript_id "TBCK--RNU6-173P^ENST00000364215.1" ; transcript_name "RNU6-173P-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TMTC2--AC089998.1 HAVANA gene 24233 27373 . + . FI_gene_label "AC089998.1^ENSG00000257431.1" ; ID "TMTC2--AC089998.1^AC089998.1^ENSG00000257431.1" ; exon_id "ENSE00002400811.1" ; exon_number 1 ; gene_id "TMTC2--AC089998.1^AC089998.1^ENSG00000257431.1" ; gene_name "AC089998.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170255.1" ; havana_transcript "OTTHUMT00000408205.1" ; level 2 ; orig_coord_info "chr12,82512677,82515817,+" ; tag basic ; transcript_id "TMTC2--AC089998.1^ENST00000548575.1" ; transcript_name "AC089998.1-201" ; transcript_support_level NA ; transcript_type lncRNA
TMTC2--AC089998.1 HAVANA RNA 24233 27373 . + . FI_gene_label "AC089998.1^ENSG00000257431.1" ; ID "TMTC2--AC089998.1^ENST00000548575.1" ; Parent "TMTC2--AC089998.1^AC089998.1^ENSG00000257431.1" ; exon_id "ENSE00002400811.1" ; exon_number 1 ; gene_id "TMTC2--AC089998.1^AC089998.1^ENSG00000257431.1" ; gene_name "AC089998.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170255.1" ; havana_transcript "OTTHUMT00000408205.1" ; level 2 ; orig_coord_info "chr12,82512677,82515817,+" ; tag basic ; transcript_id "TMTC2--AC089998.1^ENST00000548575.1" ; transcript_name "AC089998.1-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
TMTC2--AC091214.1 HAVANA gene 24233 27394 . + . FI_gene_label "AC091214.1^ENSG00000286043.1" ; ID "TMTC2--AC091214.1^AC091214.1^ENSG00000286043.1" ; exon_id "ENSE00003846981.1" ; exon_number 1 ; gene_id "TMTC2--AC091214.1^AC091214.1^ENSG00000286043.1" ; gene_name "AC091214.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192969.1" ; havana_transcript "OTTHUMT00000499727.1" ; level 2 ; orig_coord_info "chr12,82686473,82686632,-" ; tag basic ; transcript_id "TMTC2--AC091214.1^ENST00000651263.1" ; transcript_name "AC091214.1-201" ; transcript_type lncRNA
TMTC2--AC091214.1 HAVANA RNA 24233 27394 . + . FI_gene_label "AC091214.1^ENSG00000286043.1" ; ID "TMTC2--AC091214.1^ENST00000651263.1" ; Parent "TMTC2--AC091214.1^AC091214.1^ENSG00000286043.1" ; exon_id "ENSE00003846981.1" ; exon_number 1 ; gene_id "TMTC2--AC091214.1^AC091214.1^ENSG00000286043.1" ; gene_name "AC091214.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000192969.1" ; havana_transcript "OTTHUMT00000499727.1" ; level 2 ; orig_coord_info "chr12,82686473,82686632,-" ; tag basic ; transcript_id "TMTC2--AC091214.1^ENST00000651263.1" ; transcript_name "AC091214.1-201" ; transcript_type lncRNA
L1 and L2 created:
TTC39C--LINC01151 HAVANA gene 28821 41291 . + . FI_gene_label "LINC01151^ENSG00000253819.2" ; ID "TTC39C--LINC01151^LINC01151^ENSG00000253819.2" ; exon_id "ENSE00003873558.1" ; exon_number 1 ; gene_id "TTC39C--LINC01151^LINC01151^ENSG00000253819.2" ; gene_name LINC01151 ; gene_type lncRNA ; havana_gene "OTTHUMG00000165076.10" ; havana_transcript "OTTHUMT00000505918.1" ; hgnc_id "HGNC:49471" ; level 1 ; orig_coord_info "chr8,122693881,122694090,-" ; tag TAGENE exp_conf ; transcript_id "TTC39C--LINC01151^ENST00000521608.2" ; transcript_name "LINC01151-201" ; transcript_support_level 4 ; transcript_type lncRNA
TTC39C--LINC01151 HAVANA RNA 28821 41291 . + . FI_gene_label "LINC01151^ENSG00000253819.2" ; ID "TTC39C--LINC01151^ENST00000521608.2" ; Parent "TTC39C--LINC01151^LINC01151^ENSG00000253819.2" ; exon_id "ENSE00003873558.1" ; exon_number 1 ; gene_id "TTC39C--LINC01151^LINC01151^ENSG00000253819.2" ; gene_name LINC01151 ; gene_type lncRNA ; havana_gene "OTTHUMG00000165076.10" ; havana_transcript "OTTHUMT00000505918.1" ; hgnc_id "HGNC:49471" ; level 1 ; orig_coord_info "chr8,122693881,122694090,-" ; tag TAGENE exp_conf ; transcript_id "TTC39C--LINC01151^ENST00000521608.2" ; transcript_name "LINC01151-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
UHRF1--AC024610.2 HAVANA gene 27421 31493 . + . FI_gene_label "AC024610.2^ENSG00000279668.3" ; ID "UHRF1--AC024610.2^AC024610.2^ENSG00000279668.3" ; exon_id "ENSE00003792963.1" ; exon_number 1 ; gene_id "UHRF1--AC024610.2^AC024610.2^ENSG00000279668.3" ; gene_name "AC024610.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000191697.2" ; havana_transcript "OTTHUMT00000489506.1" ; level 2 ; orig_coord_info "chr17,33984187,33984374,-" ; tag RNA_Seq_supported_only basic ; transcript_id "UHRF1--AC024610.2^ENST00000584758.2" ; transcript_name "AC024610.2-205" ; transcript_support_level 5 ; transcript_type lncRNA
UHRF1--AC024610.2 HAVANA RNA 27421 31493 . + . FI_gene_label "AC024610.2^ENSG00000279668.3" ; ID "UHRF1--AC024610.2^ENST00000584758.2" ; Parent "UHRF1--AC024610.2^AC024610.2^ENSG00000279668.3" ; exon_id "ENSE00003792963.1" ; exon_number 1 ; gene_id "UHRF1--AC024610.2^AC024610.2^ENSG00000279668.3" ; gene_name "AC024610.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000191697.2" ; havana_transcript "OTTHUMT00000489506.1" ; level 2 ; orig_coord_info "chr17,33984187,33984374,-" ; tag RNA_Seq_supported_only basic ; transcript_id "UHRF1--AC024610.2^ENST00000584758.2" ; transcript_name "AC024610.2-205" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
WWTR1--C21orf91-OT1 HAVANA gene 27394 30890 . + . FI_gene_label "C21orf91-OT1^ENSG00000240770.5" ; ID "WWTR1--C21orf91-OT1^C21orf91-OT1^ENSG00000240770.5" ; exon_id "ENSE00001635146.1" ; exon_number 1 ; gene_id "WWTR1--C21orf91-OT1^C21orf91-OT1^ENSG00000240770.5" ; gene_name "C21orf91-OT1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000074506.1" ; havana_transcript "OTTHUMT00000158205.1" ; hgnc_id "HGNC:16729" ; level 2 ; orig_coord_info "chr21,17792477,17792509,-" ; transcript_id "WWTR1--C21orf91-OT1^ENST00000430401.5" ; transcript_name "C21orf91-OT1-201" ; transcript_support_level 1 ; transcript_type lncRNA
WWTR1--C21orf91-OT1 HAVANA RNA 27394 30890 . + . FI_gene_label "C21orf91-OT1^ENSG00000240770.5" ; ID "WWTR1--C21orf91-OT1^ENST00000430401.5" ; Parent "WWTR1--C21orf91-OT1^C21orf91-OT1^ENSG00000240770.5" ; exon_id "ENSE00001635146.1" ; exon_number 1 ; gene_id "WWTR1--C21orf91-OT1^C21orf91-OT1^ENSG00000240770.5" ; gene_name "C21orf91-OT1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000074506.1" ; havana_transcript "OTTHUMT00000158205.1" ; hgnc_id "HGNC:16729" ; level 2 ; orig_coord_info "chr21,17792477,17792509,-" ; transcript_id "WWTR1--C21orf91-OT1^ENST00000430401.5" ; transcript_name "C21orf91-OT1-201" ; transcript_support_level 1 ; transcript_type lncRNA
1967 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
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--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
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------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 1 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
4153 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 144 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed