Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/adc23e129d562291bee7b894a39f16/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/adc23e129d562291bee7b894a39f16/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/c82f3abe66dde4df84f5b367dc575a/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/522af6db9d3e115c2da781af157cfd/aih-tih-sc-33eb27-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-33eb27-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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