Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 9542
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 9542
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:9542
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC006008.1--ACTR3B HAVANA gene 6117 22982 . + . FI_gene_label "ACTR3B^ENSG00000133627.18" ; ID "AC006008.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; ccdsid "CCDS5934.1" ; exon_id "ENSE00003850575.1" ; exon_number 1 ; gene_id "AC006008.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; gene_name ACTR3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151463.4" ; havana_transcript "OTTHUMT00000322803.2" ; hgnc_id "HGNC:17256" ; level 2 ; orig_coord_info "chr7,152759883,152759926,+" ; protein_id "ENSP00000256001.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC006008.1--ACTR3B^ENST00000256001.13" ; transcript_name "ACTR3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC006008.1--ACTR3B HAVANA mRNA 6117 22982 . + . FI_gene_label "ACTR3B^ENSG00000133627.18" ; ID "AC006008.1--ACTR3B^ENST00000256001.13" ; Parent "AC006008.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; ccdsid "CCDS5934.1" ; exon_id "ENSE00003850575.1" ; exon_number 1 ; gene_id "AC006008.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; gene_name ACTR3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151463.4" ; havana_transcript "OTTHUMT00000322803.2" ; hgnc_id "HGNC:17256" ; level 2 ; orig_coord_info "chr7,152759883,152759926,+" ; protein_id "ENSP00000256001.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC006008.1--ACTR3B^ENST00000256001.13" ; transcript_name "ACTR3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092666.1--ACTR3B HAVANA gene 21121 37986 . + . FI_gene_label "ACTR3B^ENSG00000133627.18" ; ID "AC092666.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; ccdsid "CCDS5934.1" ; exon_id "ENSE00003850575.1" ; exon_number 1 ; gene_id "AC092666.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; gene_name ACTR3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151463.4" ; havana_transcript "OTTHUMT00000322803.2" ; hgnc_id "HGNC:17256" ; level 2 ; orig_coord_info "chr7,152759883,152759926,+" ; protein_id "ENSP00000256001.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092666.1--ACTR3B^ENST00000256001.13" ; transcript_name "ACTR3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092666.1--ACTR3B HAVANA mRNA 21121 37986 . + . FI_gene_label "ACTR3B^ENSG00000133627.18" ; ID "AC092666.1--ACTR3B^ENST00000256001.13" ; Parent "AC092666.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; ccdsid "CCDS5934.1" ; exon_id "ENSE00003850575.1" ; exon_number 1 ; gene_id "AC092666.1--ACTR3B^ACTR3B^ENSG00000133627.18" ; gene_name ACTR3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151463.4" ; havana_transcript "OTTHUMT00000322803.2" ; hgnc_id "HGNC:17256" ; level 2 ; orig_coord_info "chr7,152759883,152759926,+" ; protein_id "ENSP00000256001.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092666.1--ACTR3B^ENST00000256001.13" ; transcript_name "ACTR3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANO6--NINJ2 HAVANA gene 38735 44317 . + . FI_gene_label "NINJ2^ENSG00000171840.12" ; ID "ANO6--NINJ2^NINJ2^ENSG00000171840.12" ; exon_id "ENSE00001607882.2" ; exon_number 1 ; gene_id "ANO6--NINJ2^NINJ2^ENSG00000171840.12" ; gene_name NINJ2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090311.5" ; havana_transcript "OTTHUMT00000206673.3" ; hgnc_id "HGNC:7825" ; level 2 ; orig_coord_info "chr12,663328,663360,-" ; protein_id "ENSP00000307552.5" ; tag basic appris_alternative_2 ; transcript_id "ANO6--NINJ2^ENST00000305108.9" ; transcript_name "NINJ2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANO6--NINJ2 HAVANA mRNA 38735 44317 . + . FI_gene_label "NINJ2^ENSG00000171840.12" ; ID "ANO6--NINJ2^ENST00000305108.9" ; Parent "ANO6--NINJ2^NINJ2^ENSG00000171840.12" ; exon_id "ENSE00001607882.2" ; exon_number 1 ; gene_id "ANO6--NINJ2^NINJ2^ENSG00000171840.12" ; gene_name NINJ2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090311.5" ; havana_transcript "OTTHUMT00000206673.3" ; hgnc_id "HGNC:7825" ; level 2 ; orig_coord_info "chr12,663328,663360,-" ; protein_id "ENSP00000307552.5" ; tag basic appris_alternative_2 ; transcript_id "ANO6--NINJ2^ENST00000305108.9" ; transcript_name "NINJ2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ANO6--NINJ2 HAVANA gene 1109 32557 . + . FI_gene_label "ANO6^ENSG00000177119.17" ; ID "ANO6--NINJ2^ANO6^ENSG00000177119.17" ; ccdsid "CCDS31782.1" ; exon_id "ENSE00003849088.1" ; exon_number 1 ; gene_id "ANO6--NINJ2^ANO6^ENSG00000177119.17" ; gene_name ANO6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169564.2" ; havana_transcript "OTTHUMT00000404822.2" ; hgnc_id "HGNC:25240" ; level 2 ; orig_coord_info "chr12,45216322,45216391,+" ; protein_id "ENSP00000320087.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ANO6--NINJ2^ENST00000320560.13" ; transcript_name "ANO6-201" ; transcript_support_level 1 ; transcript_type protein_coding
ANO6--NINJ2 HAVANA mRNA 1109 32557 . + . FI_gene_label "ANO6^ENSG00000177119.17" ; ID "ANO6--NINJ2^ENST00000320560.13" ; Parent "ANO6--NINJ2^ANO6^ENSG00000177119.17" ; ccdsid "CCDS31782.1" ; exon_id "ENSE00003849088.1" ; exon_number 1 ; gene_id "ANO6--NINJ2^ANO6^ENSG00000177119.17" ; gene_name ANO6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169564.2" ; havana_transcript "OTTHUMT00000404822.2" ; hgnc_id "HGNC:25240" ; level 2 ; orig_coord_info "chr12,45216322,45216391,+" ; protein_id "ENSP00000320087.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ANO6--NINJ2^ENST00000320560.13" ; transcript_name "ANO6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP11A--MCF2L HAVANA gene 94647 104280 . + . FI_gene_label "MCF2L^ENSG00000126217.21" ; ID "ATP11A--MCF2L^MCF2L^ENSG00000126217.21" ; exon_id "ENSE00001643016.1" ; exon_number 1 ; gene_id "ATP11A--MCF2L^MCF2L^ENSG00000126217.21" ; gene_name MCF2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000017377.18" ; havana_transcript "OTTHUMT00000339076.1" ; hgnc_id "HGNC:14576" ; level 2 ; orig_coord_info "chr13,113087350,113087456,+" ; protein_id "ENSP00000261963.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "ATP11A--MCF2L^ENST00000261963.11" ; transcript_name "MCF2L-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP11A--MCF2L HAVANA mRNA 94647 104280 . + . FI_gene_label "MCF2L^ENSG00000126217.21" ; ID "ATP11A--MCF2L^ENST00000261963.11" ; Parent "ATP11A--MCF2L^MCF2L^ENSG00000126217.21" ; exon_id "ENSE00001643016.1" ; exon_number 1 ; gene_id "ATP11A--MCF2L^MCF2L^ENSG00000126217.21" ; gene_name MCF2L ; gene_type protein_coding ; havana_gene "OTTHUMG00000017377.18" ; havana_transcript "OTTHUMT00000339076.1" ; hgnc_id "HGNC:14576" ; level 2 ; orig_coord_info "chr13,113087350,113087456,+" ; protein_id "ENSP00000261963.7" ; tag mRNA_start_NF cds_start_NF ; transcript_id "ATP11A--MCF2L^ENST00000261963.11" ; transcript_name "MCF2L-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP11A--MCF2L ENSEMBL gene 1001 44637 . + . FI_gene_label "ATP11A^ENSG00000068650.18" ; ID "ATP11A--MCF2L^ATP11A^ENSG00000068650.18" ; exon_id "ENSE00001740661.1" ; exon_number 1 ; gene_id "ATP11A--MCF2L^ATP11A^ENSG00000068650.18" ; gene_name ATP11A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017371.10" ; hgnc_id "HGNC:13552" ; level 3 ; orig_coord_info "chr13,112690417,112690455,+" ; protein_id "ENSP00000364781.2" ; tag basic appris_alternative_2 ; transcript_id "ATP11A--MCF2L^ENST00000375630.6" ; transcript_name "ATP11A-201" ; transcript_support_level 5 ; transcript_type protein_coding
ATP11A--MCF2L ENSEMBL mRNA 1001 44637 . + . FI_gene_label "ATP11A^ENSG00000068650.18" ; ID "ATP11A--MCF2L^ENST00000375630.6" ; Parent "ATP11A--MCF2L^ATP11A^ENSG00000068650.18" ; exon_id "ENSE00001740661.1" ; exon_number 1 ; gene_id "ATP11A--MCF2L^ATP11A^ENSG00000068650.18" ; gene_name ATP11A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017371.10" ; hgnc_id "HGNC:13552" ; level 3 ; orig_coord_info "chr13,112690417,112690455,+" ; protein_id "ENSP00000364781.2" ; tag basic appris_alternative_2 ; transcript_id "ATP11A--MCF2L^ENST00000375630.6" ; transcript_name "ATP11A-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BAD--MACROD1 HAVANA gene 9559 19446 . + . FI_gene_label "MACROD1^ENSG00000133315.12" ; ID "BAD--MACROD1^MACROD1^ENSG00000133315.12" ; ccdsid "CCDS8056.1" ; exon_id "ENSE00002299420.2" ; exon_number 1 ; gene_id "BAD--MACROD1^MACROD1^ENSG00000133315.12" ; gene_name MACROD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167843.3" ; havana_transcript "OTTHUMT00000396570.2" ; hgnc_id "HGNC:29598" ; level 2 ; orig_coord_info "chr11,64165697,64165994,-" ; protein_id "ENSP00000255681.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BAD--MACROD1^ENST00000255681.7" ; transcript_name "MACROD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAD--MACROD1 HAVANA mRNA 9559 19446 . + . FI_gene_label "MACROD1^ENSG00000133315.12" ; ID "BAD--MACROD1^ENST00000255681.7" ; Parent "BAD--MACROD1^MACROD1^ENSG00000133315.12" ; ccdsid "CCDS8056.1" ; exon_id "ENSE00002299420.2" ; exon_number 1 ; gene_id "BAD--MACROD1^MACROD1^ENSG00000133315.12" ; gene_name MACROD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167843.3" ; havana_transcript "OTTHUMT00000396570.2" ; hgnc_id "HGNC:29598" ; level 2 ; orig_coord_info "chr11,64165697,64165994,-" ; protein_id "ENSP00000255681.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BAD--MACROD1^ENST00000255681.7" ; transcript_name "MACROD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BAD--MACROD1 HAVANA gene 1040 6558 . + . FI_gene_label "BAD^ENSG00000002330.14" ; ID "BAD--MACROD1^BAD^ENSG00000002330.14" ; ccdsid "CCDS8065.1" ; exon_id "ENSE00003585519.1" ; exon_number 2 ; gene_id "BAD--MACROD1^BAD^ENSG00000002330.14" ; gene_name BAD ; gene_type protein_coding ; havana_gene "OTTHUMG00000134302.4" ; havana_transcript "OTTHUMT00000259179.1" ; hgnc_id "HGNC:936" ; level 2 ; orig_coord_info "chr11,64284182,64284368,-" ; protein_id "ENSP00000309103.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAD--MACROD1^ENST00000309032.8" ; transcript_name "BAD-201" ; transcript_support_level 1 ; transcript_type protein_coding
BAD--MACROD1 HAVANA mRNA 1040 6558 . + . FI_gene_label "BAD^ENSG00000002330.14" ; ID "BAD--MACROD1^ENST00000309032.8" ; Parent "BAD--MACROD1^BAD^ENSG00000002330.14" ; ccdsid "CCDS8065.1" ; exon_id "ENSE00003585519.1" ; exon_number 2 ; gene_id "BAD--MACROD1^BAD^ENSG00000002330.14" ; gene_name BAD ; gene_type protein_coding ; havana_gene "OTTHUMG00000134302.4" ; havana_transcript "OTTHUMT00000259179.1" ; hgnc_id "HGNC:936" ; level 2 ; orig_coord_info "chr11,64284182,64284368,-" ; protein_id "ENSP00000309103.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BAD--MACROD1^ENST00000309032.8" ; transcript_name "BAD-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRPPA-AS1--PUM1 HAVANA gene 14070 43223 . + . FI_gene_label "PUM1^ENSG00000134644.16" ; ID "CRPPA-AS1--PUM1^PUM1^ENSG00000134644.16" ; ccdsid "CCDS338.1" ; exon_id "ENSE00003607854.1" ; exon_number 2 ; gene_id "CRPPA-AS1--PUM1^PUM1^ENSG00000134644.16" ; gene_name PUM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003795.5" ; havana_transcript "OTTHUMT00000010671.1" ; hgnc_id "HGNC:14957" ; level 2 ; orig_coord_info "chr1,31059204,31059566,-" ; protein_id "ENSP00000257075.5" ; tag basic appris_principal_4 CCDS ; transcript_id "CRPPA-AS1--PUM1^ENST00000257075.9" ; transcript_name "PUM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRPPA-AS1--PUM1 HAVANA mRNA 14070 43223 . + . FI_gene_label "PUM1^ENSG00000134644.16" ; ID "CRPPA-AS1--PUM1^ENST00000257075.9" ; Parent "CRPPA-AS1--PUM1^PUM1^ENSG00000134644.16" ; ccdsid "CCDS338.1" ; exon_id "ENSE00003607854.1" ; exon_number 2 ; gene_id "CRPPA-AS1--PUM1^PUM1^ENSG00000134644.16" ; gene_name PUM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003795.5" ; havana_transcript "OTTHUMT00000010671.1" ; hgnc_id "HGNC:14957" ; level 2 ; orig_coord_info "chr1,31059204,31059566,-" ; protein_id "ENSP00000257075.5" ; tag basic appris_principal_4 CCDS ; transcript_id "CRPPA-AS1--PUM1^ENST00000257075.9" ; transcript_name "PUM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM242C--CBX5 HAVANA gene 8716 29960 . + . FI_gene_label "CBX5^ENSG00000094916.16" ; ID "FAM242C--CBX5^CBX5^ENSG00000094916.16" ; ccdsid "CCDS8875.1" ; exon_id "ENSE00000920022.3" ; exon_number 2 ; gene_id "FAM242C--CBX5^CBX5^ENSG00000094916.16" ; gene_name CBX5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169700.3" ; havana_transcript "OTTHUMT00000405467.2" ; hgnc_id "HGNC:1555" ; level 2 ; orig_coord_info "chr12,54257514,54257650,-" ; protein_id "ENSP00000209875.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM242C--CBX5^ENST00000209875.9" ; transcript_name "CBX5-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM242C--CBX5 HAVANA mRNA 8716 29960 . + . FI_gene_label "CBX5^ENSG00000094916.16" ; ID "FAM242C--CBX5^ENST00000209875.9" ; Parent "FAM242C--CBX5^CBX5^ENSG00000094916.16" ; ccdsid "CCDS8875.1" ; exon_id "ENSE00000920022.3" ; exon_number 2 ; gene_id "FAM242C--CBX5^CBX5^ENSG00000094916.16" ; gene_name CBX5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169700.3" ; havana_transcript "OTTHUMT00000405467.2" ; hgnc_id "HGNC:1555" ; level 2 ; orig_coord_info "chr12,54257514,54257650,-" ; protein_id "ENSP00000209875.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FAM242C--CBX5^ENST00000209875.9" ; transcript_name "CBX5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FKBP5--DNAH17 HAVANA gene 3325 22879 . + . FI_gene_label "FKBP5^ENSG00000096060.15" ; ID "FKBP5--DNAH17^FKBP5^ENSG00000096060.15" ; ccdsid "CCDS4808.1" ; exon_id "ENSE00001370159.1" ; exon_number 2 ; gene_id "FKBP5--DNAH17^FKBP5^ENSG00000096060.15" ; gene_name FKBP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014576.2" ; havana_transcript "OTTHUMT00000040309.2" ; hgnc_id "HGNC:3721" ; level 2 ; orig_coord_info "chr6,35642720,35642824,-" ; protein_id "ENSP00000349811.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FKBP5--DNAH17^ENST00000357266.9" ; transcript_name "FKBP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
FKBP5--DNAH17 HAVANA mRNA 3325 22879 . + . FI_gene_label "FKBP5^ENSG00000096060.15" ; ID "FKBP5--DNAH17^ENST00000357266.9" ; Parent "FKBP5--DNAH17^FKBP5^ENSG00000096060.15" ; ccdsid "CCDS4808.1" ; exon_id "ENSE00001370159.1" ; exon_number 2 ; gene_id "FKBP5--DNAH17^FKBP5^ENSG00000096060.15" ; gene_name FKBP5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014576.2" ; havana_transcript "OTTHUMT00000040309.2" ; hgnc_id "HGNC:3721" ; level 2 ; orig_coord_info "chr6,35642720,35642824,-" ; protein_id "ENSP00000349811.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FKBP5--DNAH17^ENST00000357266.9" ; transcript_name "FKBP5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FKBP5--DNAH17 HAVANA gene 25885 101721 . + . FI_gene_label "DNAH17^ENSG00000187775.17" ; ID "FKBP5--DNAH17^DNAH17^ENSG00000187775.17" ; ccdsid "CCDS11757.2" ; exon_id "ENSE00001550535.1" ; exon_number 2 ; gene_id "FKBP5--DNAH17^DNAH17^ENSG00000187775.17" ; gene_name DNAH17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150216.8" ; havana_transcript "OTTHUMT00000318962.3" ; hgnc_id "HGNC:2946" ; level 2 ; orig_coord_info "chr17,78574713,78575057,-" ; protein_id "ENSP00000374490.6" ; tag CAGE_supported_TSS not_best_in_genome_evidence inferred_transcript_model not_organism_supported basic MANE_Select appris_principal_1 CCDS ; transcript_id "FKBP5--DNAH17^ENST00000389840.7" ; transcript_name "DNAH17-201" ; transcript_support_level 5 ; transcript_type protein_coding
FKBP5--DNAH17 HAVANA mRNA 25885 101721 . + . FI_gene_label "DNAH17^ENSG00000187775.17" ; ID "FKBP5--DNAH17^ENST00000389840.7" ; Parent "FKBP5--DNAH17^DNAH17^ENSG00000187775.17" ; ccdsid "CCDS11757.2" ; exon_id "ENSE00001550535.1" ; exon_number 2 ; gene_id "FKBP5--DNAH17^DNAH17^ENSG00000187775.17" ; gene_name DNAH17 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150216.8" ; havana_transcript "OTTHUMT00000318962.3" ; hgnc_id "HGNC:2946" ; level 2 ; orig_coord_info "chr17,78574713,78575057,-" ; protein_id "ENSP00000374490.6" ; tag CAGE_supported_TSS not_best_in_genome_evidence inferred_transcript_model not_organism_supported basic MANE_Select appris_principal_1 CCDS ; transcript_id "FKBP5--DNAH17^ENST00000389840.7" ; transcript_name "DNAH17-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
GANC--CAPN3 HAVANA gene 2010 38044 . + . FI_gene_label "GANC^ENSG00000214013.9" ; ID "GANC--CAPN3^GANC^ENSG00000214013.9" ; ccdsid "CCDS10084.1" ; exon_id "ENSE00001934013.1" ; exon_number 1 ; gene_id "GANC--CAPN3^GANC^ENSG00000214013.9" ; gene_name GANC ; gene_type protein_coding ; havana_gene "OTTHUMG00000130487.8" ; havana_transcript "OTTHUMT00000252887.3" ; hgnc_id "HGNC:4139" ; level 2 ; orig_coord_info "chr15,42274482,42274510,+" ; protein_id "ENSP00000326227.8" ; tag basic appris_principal_1 CCDS ; transcript_id "GANC--CAPN3^ENST00000318010.12" ; transcript_name "GANC-201" ; transcript_support_level 1 ; transcript_type protein_coding
GANC--CAPN3 HAVANA mRNA 2010 38044 . + . FI_gene_label "GANC^ENSG00000214013.9" ; ID "GANC--CAPN3^ENST00000318010.12" ; Parent "GANC--CAPN3^GANC^ENSG00000214013.9" ; ccdsid "CCDS10084.1" ; exon_id "ENSE00001934013.1" ; exon_number 1 ; gene_id "GANC--CAPN3^GANC^ENSG00000214013.9" ; gene_name GANC ; gene_type protein_coding ; havana_gene "OTTHUMG00000130487.8" ; havana_transcript "OTTHUMT00000252887.3" ; hgnc_id "HGNC:4139" ; level 2 ; orig_coord_info "chr15,42274482,42274510,+" ; protein_id "ENSP00000326227.8" ; tag basic appris_principal_1 CCDS ; transcript_id "GANC--CAPN3^ENST00000318010.12" ; transcript_name "GANC-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GANC--CAPN3 ENSEMBL gene 41047 65484 . + . FI_gene_label "CAPN3^ENSG00000092529.25" ; ID "GANC--CAPN3^CAPN3^ENSG00000092529.25" ; exon_id "ENSE00003743813.1" ; exon_number 1 ; gene_id "GANC--CAPN3^CAPN3^ENSG00000092529.25" ; gene_name CAPN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130619.16" ; hgnc_id "HGNC:1480" ; level 3 ; orig_coord_info "chr15,42359806,42360114,+" ; protein_id "ENSP00000326281.8" ; tag basic appris_alternative_2 ; transcript_id "GANC--CAPN3^ENST00000318023.11" ; transcript_name "CAPN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
GANC--CAPN3 ENSEMBL mRNA 41047 65484 . + . FI_gene_label "CAPN3^ENSG00000092529.25" ; ID "GANC--CAPN3^ENST00000318023.11" ; Parent "GANC--CAPN3^CAPN3^ENSG00000092529.25" ; exon_id "ENSE00003743813.1" ; exon_number 1 ; gene_id "GANC--CAPN3^CAPN3^ENSG00000092529.25" ; gene_name CAPN3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130619.16" ; hgnc_id "HGNC:1480" ; level 3 ; orig_coord_info "chr15,42359806,42360114,+" ; protein_id "ENSP00000326281.8" ; tag basic appris_alternative_2 ; transcript_id "GANC--CAPN3^ENST00000318023.11" ; transcript_name "CAPN3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
IKBKG--GDI1 HAVANA gene 4519 10371 . + . FI_gene_label "IKBKG^ENSG00000269335.6" ; ID "IKBKG--GDI1^IKBKG^ENSG00000269335.6" ; exon_id "ENSE00001651956.1" ; exon_number 2 ; gene_id "IKBKG--GDI1^IKBKG^ENSG00000269335.6" ; gene_name IKBKG ; gene_type protein_coding ; havana_gene "OTTHUMG00000024234.17" ; havana_transcript "OTTHUMT00000061161.2" ; hgnc_id "HGNC:5961" ; level 2 ; orig_coord_info "chrX,154552039,154552189,+" ; protein_id "ENSP00000398579.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "IKBKG--GDI1^ENST00000413620.5" ; transcript_name "IKBKG-201" ; transcript_support_level 5 ; transcript_type protein_coding
IKBKG--GDI1 HAVANA mRNA 4519 10371 . + . FI_gene_label "IKBKG^ENSG00000269335.6" ; ID "IKBKG--GDI1^ENST00000413620.5" ; Parent "IKBKG--GDI1^IKBKG^ENSG00000269335.6" ; exon_id "ENSE00001651956.1" ; exon_number 2 ; gene_id "IKBKG--GDI1^IKBKG^ENSG00000269335.6" ; gene_name IKBKG ; gene_type protein_coding ; havana_gene "OTTHUMG00000024234.17" ; havana_transcript "OTTHUMT00000061161.2" ; hgnc_id "HGNC:5961" ; level 2 ; orig_coord_info "chrX,154552039,154552189,+" ; protein_id "ENSP00000398579.1" ; tag mRNA_end_NF cds_end_NF ; transcript_id "IKBKG--GDI1^ENST00000413620.5" ; transcript_name "IKBKG-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
IKBKG--GDI1 HAVANA gene 18007 19893 . + . FI_gene_label "GDI1^ENSG00000203879.12" ; ID "IKBKG--GDI1^GDI1^ENSG00000203879.12" ; exon_id "ENSE00001693599.1" ; exon_number 1 ; gene_id "IKBKG--GDI1^GDI1^ENSG00000203879.12" ; gene_name GDI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033293.10" ; havana_transcript "OTTHUMT00000286448.2" ; hgnc_id "HGNC:4226" ; level 2 ; orig_coord_info "chrX,154437255,154437299,+" ; protein_id "ENSP00000396215.1" ; transcript_id "IKBKG--GDI1^ENST00000415109.5" ; transcript_name "GDI1-201" ; transcript_support_level 4 ; transcript_type nonsense_mediated_decay
IKBKG--GDI1 HAVANA mRNA 18007 19893 . + . FI_gene_label "GDI1^ENSG00000203879.12" ; ID "IKBKG--GDI1^ENST00000415109.5" ; Parent "IKBKG--GDI1^GDI1^ENSG00000203879.12" ; exon_id "ENSE00001693599.1" ; exon_number 1 ; gene_id "IKBKG--GDI1^GDI1^ENSG00000203879.12" ; gene_name GDI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033293.10" ; havana_transcript "OTTHUMT00000286448.2" ; hgnc_id "HGNC:4226" ; level 2 ; orig_coord_info "chrX,154437255,154437299,+" ; protein_id "ENSP00000396215.1" ; transcript_id "IKBKG--GDI1^ENST00000415109.5" ; transcript_name "GDI1-201" ; transcript_support_level 4 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
KCTD1--AC090772.2 ENSEMBL gene 3077 18352 . + . FI_gene_label "KCTD1^ENSG00000134504.14" ; ID "KCTD1--AC090772.2^KCTD1^ENSG00000134504.14" ; ccdsid "CCDS11888.1" ; exon_id "ENSE00003568331.1" ; exon_number 2 ; gene_id "KCTD1--AC090772.2^KCTD1^ENSG00000134504.14" ; gene_name KCTD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131947.7" ; hgnc_id "HGNC:18249" ; level 3 ; orig_coord_info "chr18,26501072,26501235,-" ; protein_id "ENSP00000314831.7" ; tag basic CCDS ; transcript_id "KCTD1--AC090772.2^ENST00000317932.11" ; transcript_name "KCTD1-201" ; transcript_support_level 5 ; transcript_type protein_coding
KCTD1--AC090772.2 ENSEMBL mRNA 3077 18352 . + . FI_gene_label "KCTD1^ENSG00000134504.14" ; ID "KCTD1--AC090772.2^ENST00000317932.11" ; Parent "KCTD1--AC090772.2^KCTD1^ENSG00000134504.14" ; ccdsid "CCDS11888.1" ; exon_id "ENSE00003568331.1" ; exon_number 2 ; gene_id "KCTD1--AC090772.2^KCTD1^ENSG00000134504.14" ; gene_name KCTD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131947.7" ; hgnc_id "HGNC:18249" ; level 3 ; orig_coord_info "chr18,26501072,26501235,-" ; protein_id "ENSP00000314831.7" ; tag basic CCDS ; transcript_id "KCTD1--AC090772.2^ENST00000317932.11" ; transcript_name "KCTD1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
NUDT4--MRPL42 HAVANA gene 1001 16296 . + . FI_gene_label "NUDT4^ENSG00000173598.14" ; ID "NUDT4--MRPL42^NUDT4^ENSG00000173598.14" ; ccdsid "CCDS9044.1" ; exon_id "ENSE00002331529.1" ; exon_number 1 ; gene_id "NUDT4--MRPL42^NUDT4^ENSG00000173598.14" ; gene_name NUDT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170155.4" ; havana_transcript "OTTHUMT00000407701.2" ; hgnc_id "HGNC:8051" ; level 2 ; orig_coord_info "chr12,93378323,93378421,+" ; protein_id "ENSP00000338352.5" ; tag basic appris_principal_1 CCDS ; transcript_id "NUDT4--MRPL42^ENST00000337179.9" ; transcript_name "NUDT4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUDT4--MRPL42 HAVANA mRNA 1001 16296 . + . FI_gene_label "NUDT4^ENSG00000173598.14" ; ID "NUDT4--MRPL42^ENST00000337179.9" ; Parent "NUDT4--MRPL42^NUDT4^ENSG00000173598.14" ; ccdsid "CCDS9044.1" ; exon_id "ENSE00002331529.1" ; exon_number 1 ; gene_id "NUDT4--MRPL42^NUDT4^ENSG00000173598.14" ; gene_name NUDT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170155.4" ; havana_transcript "OTTHUMT00000407701.2" ; hgnc_id "HGNC:8051" ; level 2 ; orig_coord_info "chr12,93378323,93378421,+" ; protein_id "ENSP00000338352.5" ; tag basic appris_principal_1 CCDS ; transcript_id "NUDT4--MRPL42^ENST00000337179.9" ; transcript_name "NUDT4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUDT4--MRPL42 HAVANA gene 19301 28649 . + . FI_gene_label "MRPL42^ENSG00000198015.14" ; ID "NUDT4--MRPL42^MRPL42^ENSG00000198015.14" ; exon_id "ENSE00003552476.1" ; exon_number 2 ; gene_id "NUDT4--MRPL42^MRPL42^ENSG00000198015.14" ; gene_name MRPL42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170157.4" ; havana_transcript "OTTHUMT00000407720.1" ; hgnc_id "HGNC:14493" ; level 2 ; orig_coord_info "chr12,93469286,93469355,+" ; protein_id "ENSP00000351506.3" ; transcript_id "NUDT4--MRPL42^ENST00000358678.7" ; transcript_name "MRPL42-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
NUDT4--MRPL42 HAVANA mRNA 19301 28649 . + . FI_gene_label "MRPL42^ENSG00000198015.14" ; ID "NUDT4--MRPL42^ENST00000358678.7" ; Parent "NUDT4--MRPL42^MRPL42^ENSG00000198015.14" ; exon_id "ENSE00003552476.1" ; exon_number 2 ; gene_id "NUDT4--MRPL42^MRPL42^ENSG00000198015.14" ; gene_name MRPL42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170157.4" ; havana_transcript "OTTHUMT00000407720.1" ; hgnc_id "HGNC:14493" ; level 2 ; orig_coord_info "chr12,93469286,93469355,+" ; protein_id "ENSP00000351506.3" ; transcript_id "NUDT4--MRPL42^ENST00000358678.7" ; transcript_name "MRPL42-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
NUDT4--SOCS2 HAVANA gene 1001 16296 . + . FI_gene_label "NUDT4^ENSG00000173598.14" ; ID "NUDT4--SOCS2^NUDT4^ENSG00000173598.14" ; ccdsid "CCDS9044.1" ; exon_id "ENSE00002331529.1" ; exon_number 1 ; gene_id "NUDT4--SOCS2^NUDT4^ENSG00000173598.14" ; gene_name NUDT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170155.4" ; havana_transcript "OTTHUMT00000407701.2" ; hgnc_id "HGNC:8051" ; level 2 ; orig_coord_info "chr12,93378323,93378421,+" ; protein_id "ENSP00000338352.5" ; tag basic appris_principal_1 CCDS ; transcript_id "NUDT4--SOCS2^ENST00000337179.9" ; transcript_name "NUDT4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUDT4--SOCS2 HAVANA mRNA 1001 16296 . + . FI_gene_label "NUDT4^ENSG00000173598.14" ; ID "NUDT4--SOCS2^ENST00000337179.9" ; Parent "NUDT4--SOCS2^NUDT4^ENSG00000173598.14" ; ccdsid "CCDS9044.1" ; exon_id "ENSE00002331529.1" ; exon_number 1 ; gene_id "NUDT4--SOCS2^NUDT4^ENSG00000173598.14" ; gene_name NUDT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170155.4" ; havana_transcript "OTTHUMT00000407701.2" ; hgnc_id "HGNC:8051" ; level 2 ; orig_coord_info "chr12,93378323,93378421,+" ; protein_id "ENSP00000338352.5" ; tag basic appris_principal_1 CCDS ; transcript_id "NUDT4--SOCS2^ENST00000337179.9" ; transcript_name "NUDT4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUDT4--SOCS2 HAVANA gene 19297 26228 . + . FI_gene_label "SOCS2^ENSG00000120833.14" ; ID "NUDT4--SOCS2^SOCS2^ENSG00000120833.14" ; ccdsid "CCDS9047.1" ; exon_id "ENSE00001391584.1" ; exon_number 2 ; gene_id "NUDT4--SOCS2^SOCS2^ENSG00000120833.14" ; gene_name SOCS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170160.6" ; havana_transcript "OTTHUMT00000407731.2" ; hgnc_id "HGNC:19382" ; level 2 ; orig_coord_info "chr12,93572898,93573036,+" ; protein_id "ENSP00000339428.2" ; tag basic appris_principal_1 CCDS ; transcript_id "NUDT4--SOCS2^ENST00000340600.6" ; transcript_name "SOCS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUDT4--SOCS2 HAVANA mRNA 19297 26228 . + . FI_gene_label "SOCS2^ENSG00000120833.14" ; ID "NUDT4--SOCS2^ENST00000340600.6" ; Parent "NUDT4--SOCS2^SOCS2^ENSG00000120833.14" ; ccdsid "CCDS9047.1" ; exon_id "ENSE00001391584.1" ; exon_number 2 ; gene_id "NUDT4--SOCS2^SOCS2^ENSG00000120833.14" ; gene_name SOCS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170160.6" ; havana_transcript "OTTHUMT00000407731.2" ; hgnc_id "HGNC:19382" ; level 2 ; orig_coord_info "chr12,93572898,93573036,+" ; protein_id "ENSP00000339428.2" ; tag basic appris_principal_1 CCDS ; transcript_id "NUDT4--SOCS2^ENST00000340600.6" ; transcript_name "SOCS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NUS1--AC114501.3 HAVANA gene 1001 9659 . + . FI_gene_label "NUS1^ENSG00000153989.8" ; ID "NUS1--AC114501.3^NUS1^ENSG00000153989.8" ; ccdsid "CCDS5118.1" ; exon_id "ENSE00001447272.4" ; exon_number 1 ; gene_id "NUS1--AC114501.3^NUS1^ENSG00000153989.8" ; gene_name NUS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015458.2" ; havana_transcript "OTTHUMT00000041989.2" ; hgnc_id "HGNC:21042" ; level 2 ; orig_coord_info "chr6,117675671,117676085,+" ; protein_id "ENSP00000357480.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NUS1--AC114501.3^ENST00000368494.4" ; transcript_name "NUS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NUS1--AC114501.3 HAVANA mRNA 1001 9659 . + . FI_gene_label "NUS1^ENSG00000153989.8" ; ID "NUS1--AC114501.3^ENST00000368494.4" ; Parent "NUS1--AC114501.3^NUS1^ENSG00000153989.8" ; ccdsid "CCDS5118.1" ; exon_id "ENSE00001447272.4" ; exon_number 1 ; gene_id "NUS1--AC114501.3^NUS1^ENSG00000153989.8" ; gene_name NUS1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015458.2" ; havana_transcript "OTTHUMT00000041989.2" ; hgnc_id "HGNC:21042" ; level 2 ; orig_coord_info "chr6,117675671,117676085,+" ; protein_id "ENSP00000357480.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NUS1--AC114501.3^ENST00000368494.4" ; transcript_name "NUS1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHA13 HAVANA gene 8595 17035 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHA13 HAVANA mRNA 8595 17035 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA3--PCDHA13^ENST00000289272.3" ; Parent "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHA13 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHA13^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHA13 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHA13^ENST00000532566.3" ; Parent "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHA13^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHA13^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC1 HAVANA gene 8595 18610 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHAC1 HAVANA mRNA 8595 18610 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA3--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC1 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC1^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHAC1 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC1^ENST00000532566.3" ; Parent "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC1^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC1^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC2 HAVANA gene 8601 19336 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA3--PCDHAC2 HAVANA mRNA 8601 19336 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA3--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA3--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA3--PCDHAC2 HAVANA gene 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC2^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA3--PCDHAC2 HAVANA mRNA 1001 5594 . + . FI_gene_label "PCDHA3^ENSG00000255408.4" ; ID "PCDHA3--PCDHAC2^ENST00000532566.3" ; Parent "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; exon_id "ENSE00002153432.3" ; exon_number 1 ; gene_id "PCDHA3--PCDHAC2^PCDHA3^ENSG00000255408.4" ; gene_name PCDHA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163357.4" ; havana_transcript "OTTHUMT00000477482.1" ; hgnc_id "HGNC:8669" ; level 2 ; orig_coord_info "chr5,140801198,140803669,+" ; protein_id "ENSP00000434086.2" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHA3--PCDHAC2^ENST00000532566.3" ; transcript_name "PCDHA3-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PIWIL2--NOS2P2 HAVANA gene 1001 26339 . + . FI_gene_label "PIWIL2^ENSG00000197181.12" ; ID "PIWIL2--NOS2P2^PIWIL2^ENSG00000197181.12" ; ccdsid "CCDS6029.1" ; exon_id "ENSE00001391932.1" ; exon_number 2 ; gene_id "PIWIL2--NOS2P2^PIWIL2^ENSG00000197181.12" ; gene_name PIWIL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097767.3" ; havana_transcript "OTTHUMT00000215006.3" ; hgnc_id "HGNC:17644" ; level 2 ; orig_coord_info "chr8,22279387,22279584,+" ; protein_id "ENSP00000349208.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PIWIL2--NOS2P2^ENST00000356766.11" ; transcript_name "PIWIL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PIWIL2--NOS2P2 HAVANA mRNA 1001 26339 . + . FI_gene_label "PIWIL2^ENSG00000197181.12" ; ID "PIWIL2--NOS2P2^ENST00000356766.11" ; Parent "PIWIL2--NOS2P2^PIWIL2^ENSG00000197181.12" ; ccdsid "CCDS6029.1" ; exon_id "ENSE00001391932.1" ; exon_number 2 ; gene_id "PIWIL2--NOS2P2^PIWIL2^ENSG00000197181.12" ; gene_name PIWIL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000097767.3" ; havana_transcript "OTTHUMT00000215006.3" ; hgnc_id "HGNC:17644" ; level 2 ; orig_coord_info "chr8,22279387,22279584,+" ; protein_id "ENSP00000349208.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PIWIL2--NOS2P2^ENST00000356766.11" ; transcript_name "PIWIL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLEKHA5--TFAP2A HAVANA gene 1062 49317 . + . FI_gene_label "PLEKHA5^ENSG00000052126.15" ; ID "PLEKHA5--TFAP2A^PLEKHA5^ENSG00000052126.15" ; ccdsid "CCDS8682.1" ; exon_id "ENSE00003501511.1" ; exon_number 1 ; gene_id "PLEKHA5--TFAP2A^PLEKHA5^ENSG00000052126.15" ; gene_name PLEKHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167921.3" ; havana_transcript "OTTHUMT00000397013.1" ; hgnc_id "HGNC:30036" ; level 2 ; orig_coord_info "chr12,19129800,19129888,+" ; protein_id "ENSP00000299275.6" ; tag basic appris_principal_4 CCDS ; transcript_id "PLEKHA5--TFAP2A^ENST00000299275.10" ; transcript_name "PLEKHA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLEKHA5--TFAP2A HAVANA mRNA 1062 49317 . + . FI_gene_label "PLEKHA5^ENSG00000052126.15" ; ID "PLEKHA5--TFAP2A^ENST00000299275.10" ; Parent "PLEKHA5--TFAP2A^PLEKHA5^ENSG00000052126.15" ; ccdsid "CCDS8682.1" ; exon_id "ENSE00003501511.1" ; exon_number 1 ; gene_id "PLEKHA5--TFAP2A^PLEKHA5^ENSG00000052126.15" ; gene_name PLEKHA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167921.3" ; havana_transcript "OTTHUMT00000397013.1" ; hgnc_id "HGNC:30036" ; level 2 ; orig_coord_info "chr12,19129800,19129888,+" ; protein_id "ENSP00000299275.6" ; tag basic appris_principal_4 CCDS ; transcript_id "PLEKHA5--TFAP2A^ENST00000299275.10" ; transcript_name "PLEKHA5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLEKHA5--TFAP2A HAVANA gene 52339 69534 . + . FI_gene_label "TFAP2A^ENSG00000137203.15" ; ID "PLEKHA5--TFAP2A^TFAP2A^ENSG00000137203.15" ; ccdsid "CCDS43422.1" ; exon_id "ENSE00001817234.1" ; exon_number 1 ; gene_id "PLEKHA5--TFAP2A^TFAP2A^ENSG00000137203.15" ; gene_name TFAP2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014235.8" ; havana_transcript "OTTHUMT00000039817.2" ; hgnc_id "HGNC:11742" ; level 2 ; orig_coord_info "chr6,10419418,10419450,-" ; protein_id "ENSP00000316516.4" ; tag not_organism_supported basic appris_alternative_1 CCDS ; transcript_id "PLEKHA5--TFAP2A^ENST00000319516.8" ; transcript_name "TFAP2A-201" ; transcript_support_level 5 ; transcript_type protein_coding
PLEKHA5--TFAP2A HAVANA mRNA 52339 69534 . + . FI_gene_label "TFAP2A^ENSG00000137203.15" ; ID "PLEKHA5--TFAP2A^ENST00000319516.8" ; Parent "PLEKHA5--TFAP2A^TFAP2A^ENSG00000137203.15" ; ccdsid "CCDS43422.1" ; exon_id "ENSE00001817234.1" ; exon_number 1 ; gene_id "PLEKHA5--TFAP2A^TFAP2A^ENSG00000137203.15" ; gene_name TFAP2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014235.8" ; havana_transcript "OTTHUMT00000039817.2" ; hgnc_id "HGNC:11742" ; level 2 ; orig_coord_info "chr6,10419418,10419450,-" ; protein_id "ENSP00000316516.4" ; tag not_organism_supported basic appris_alternative_1 CCDS ; transcript_id "PLEKHA5--TFAP2A^ENST00000319516.8" ; transcript_name "TFAP2A-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PRPF40B--SPATS2 HAVANA gene 10252 22842 . + . FI_gene_label "PRPF40B^ENSG00000110844.14" ; ID "PRPF40B--SPATS2^PRPF40B^ENSG00000110844.14" ; exon_id "ENSE00003759647.1" ; exon_number 2 ; gene_id "PRPF40B--SPATS2^PRPF40B^ENSG00000110844.14" ; gene_name PRPF40B ; gene_type protein_coding ; havana_gene "OTTHUMG00000169568.7" ; havana_transcript "OTTHUMT00000404847.1" ; hgnc_id "HGNC:25031" ; level 2 ; orig_coord_info "chr12,49631401,49631544,+" ; protein_id "ENSP00000261897.1" ; tag basic appris_alternative_2 ; transcript_id "PRPF40B--SPATS2^ENST00000261897.5" ; transcript_name "PRPF40B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRPF40B--SPATS2 HAVANA mRNA 10252 22842 . + . FI_gene_label "PRPF40B^ENSG00000110844.14" ; ID "PRPF40B--SPATS2^ENST00000261897.5" ; Parent "PRPF40B--SPATS2^PRPF40B^ENSG00000110844.14" ; exon_id "ENSE00003759647.1" ; exon_number 2 ; gene_id "PRPF40B--SPATS2^PRPF40B^ENSG00000110844.14" ; gene_name PRPF40B ; gene_type protein_coding ; havana_gene "OTTHUMG00000169568.7" ; havana_transcript "OTTHUMT00000404847.1" ; hgnc_id "HGNC:25031" ; level 2 ; orig_coord_info "chr12,49631401,49631544,+" ; protein_id "ENSP00000261897.1" ; tag basic appris_alternative_2 ; transcript_id "PRPF40B--SPATS2^ENST00000261897.5" ; transcript_name "PRPF40B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PRPF40B--SPATS2 HAVANA gene 26734 52720 . + . FI_gene_label "SPATS2^ENSG00000123352.18" ; ID "PRPF40B--SPATS2^SPATS2^ENSG00000123352.18" ; ccdsid "CCDS31794.1" ; exon_id "ENSE00003795925.1" ; exon_number 2 ; gene_id "PRPF40B--SPATS2^SPATS2^ENSG00000123352.18" ; gene_name SPATS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169419.11" ; havana_transcript "OTTHUMT00000403928.2" ; hgnc_id "HGNC:18650" ; level 2 ; orig_coord_info "chr12,49461013,49461037,+" ; protein_id "ENSP00000326841.6" ; tag basic appris_principal_1 CCDS ; transcript_id "PRPF40B--SPATS2^ENST00000321898.10" ; transcript_name "SPATS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PRPF40B--SPATS2 HAVANA mRNA 26734 52720 . + . FI_gene_label "SPATS2^ENSG00000123352.18" ; ID "PRPF40B--SPATS2^ENST00000321898.10" ; Parent "PRPF40B--SPATS2^SPATS2^ENSG00000123352.18" ; ccdsid "CCDS31794.1" ; exon_id "ENSE00003795925.1" ; exon_number 2 ; gene_id "PRPF40B--SPATS2^SPATS2^ENSG00000123352.18" ; gene_name SPATS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169419.11" ; havana_transcript "OTTHUMT00000403928.2" ; hgnc_id "HGNC:18650" ; level 2 ; orig_coord_info "chr12,49461013,49461037,+" ; protein_id "ENSP00000326841.6" ; tag basic appris_principal_1 CCDS ; transcript_id "PRPF40B--SPATS2^ENST00000321898.10" ; transcript_name "SPATS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PUM2--CEP104 HAVANA gene 6028 28883 . + . FI_gene_label "PUM2^ENSG00000055917.16" ; ID "PUM2--CEP104^PUM2^ENSG00000055917.16" ; ccdsid "CCDS1698.1" ; exon_id "ENSE00001183721.4" ; exon_number 1 ; gene_id "PUM2--CEP104^PUM2^ENSG00000055917.16" ; gene_name PUM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000122098.4" ; havana_transcript "OTTHUMT00000242862.1" ; hgnc_id "HGNC:14958" ; level 2 ; orig_coord_info "chr2,20327310,20327360,-" ; protein_id "ENSP00000338173.5" ; tag basic appris_principal_1 CCDS ; transcript_id "PUM2--CEP104^ENST00000338086.9" ; transcript_name "PUM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PUM2--CEP104 HAVANA mRNA 6028 28883 . + . FI_gene_label "PUM2^ENSG00000055917.16" ; ID "PUM2--CEP104^ENST00000338086.9" ; Parent "PUM2--CEP104^PUM2^ENSG00000055917.16" ; ccdsid "CCDS1698.1" ; exon_id "ENSE00001183721.4" ; exon_number 1 ; gene_id "PUM2--CEP104^PUM2^ENSG00000055917.16" ; gene_name PUM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000122098.4" ; havana_transcript "OTTHUMT00000242862.1" ; hgnc_id "HGNC:14958" ; level 2 ; orig_coord_info "chr2,20327310,20327360,-" ; protein_id "ENSP00000338173.5" ; tag basic appris_principal_1 CCDS ; transcript_id "PUM2--CEP104^ENST00000338086.9" ; transcript_name "PUM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PUM2--CEP104 HAVANA gene 32066 41232 . + . FI_gene_label "CEP104^ENSG00000116198.14" ; ID "PUM2--CEP104^CEP104^ENSG00000116198.14" ; exon_id "ENSE00003624424.1" ; exon_number 2 ; gene_id "PUM2--CEP104^CEP104^ENSG00000116198.14" ; gene_name CEP104 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003507.6" ; havana_transcript "OTTHUMT00000009748.1" ; hgnc_id "HGNC:24866" ; level 2 ; orig_coord_info "chr1,3852295,3852407,-" ; protein_id "ENSP00000367468.3" ; tag basic ; transcript_id "PUM2--CEP104^ENST00000378223.3" ; transcript_name "CEP104-201" ; transcript_support_level 1 ; transcript_type protein_coding
PUM2--CEP104 HAVANA mRNA 32066 41232 . + . FI_gene_label "CEP104^ENSG00000116198.14" ; ID "PUM2--CEP104^ENST00000378223.3" ; Parent "PUM2--CEP104^CEP104^ENSG00000116198.14" ; exon_id "ENSE00003624424.1" ; exon_number 2 ; gene_id "PUM2--CEP104^CEP104^ENSG00000116198.14" ; gene_name CEP104 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003507.6" ; havana_transcript "OTTHUMT00000009748.1" ; hgnc_id "HGNC:24866" ; level 2 ; orig_coord_info "chr1,3852295,3852407,-" ; protein_id "ENSP00000367468.3" ; tag basic ; transcript_id "PUM2--CEP104^ENST00000378223.3" ; transcript_name "CEP104-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PUM2--DFFB HAVANA gene 6028 28883 . + . FI_gene_label "PUM2^ENSG00000055917.16" ; ID "PUM2--DFFB^PUM2^ENSG00000055917.16" ; ccdsid "CCDS1698.1" ; exon_id "ENSE00001183721.4" ; exon_number 1 ; gene_id "PUM2--DFFB^PUM2^ENSG00000055917.16" ; gene_name PUM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000122098.4" ; havana_transcript "OTTHUMT00000242862.1" ; hgnc_id "HGNC:14958" ; level 2 ; orig_coord_info "chr2,20327310,20327360,-" ; protein_id "ENSP00000338173.5" ; tag basic appris_principal_1 CCDS ; transcript_id "PUM2--DFFB^ENST00000338086.9" ; transcript_name "PUM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PUM2--DFFB HAVANA mRNA 6028 28883 . + . FI_gene_label "PUM2^ENSG00000055917.16" ; ID "PUM2--DFFB^ENST00000338086.9" ; Parent "PUM2--DFFB^PUM2^ENSG00000055917.16" ; ccdsid "CCDS1698.1" ; exon_id "ENSE00001183721.4" ; exon_number 1 ; gene_id "PUM2--DFFB^PUM2^ENSG00000055917.16" ; gene_name PUM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000122098.4" ; havana_transcript "OTTHUMT00000242862.1" ; hgnc_id "HGNC:14958" ; level 2 ; orig_coord_info "chr2,20327310,20327360,-" ; protein_id "ENSP00000338173.5" ; tag basic appris_principal_1 CCDS ; transcript_id "PUM2--DFFB^ENST00000338086.9" ; transcript_name "PUM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PUM2--DFFB ENSEMBL gene 31884 43468 . + . FI_gene_label "DFFB^ENSG00000169598.17" ; ID "PUM2--DFFB^DFFB^ENSG00000169598.17" ; ccdsid "CCDS72693.1" ; exon_id "ENSE00003746851.1" ; exon_number 1 ; gene_id "PUM2--DFFB^DFFB^ENSG00000169598.17" ; gene_name DFFB ; gene_type protein_coding ; havana_gene "OTTHUMG00000003525.6" ; hgnc_id "HGNC:2773" ; level 3 ; orig_coord_info "chr1,3857604,3857717,+" ; protein_id "ENSP00000339524.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "PUM2--DFFB^ENST00000338895.7" ; transcript_name "DFFB-201" ; transcript_support_level 2 ; transcript_type protein_coding
PUM2--DFFB ENSEMBL mRNA 31884 43468 . + . FI_gene_label "DFFB^ENSG00000169598.17" ; ID "PUM2--DFFB^ENST00000338895.7" ; Parent "PUM2--DFFB^DFFB^ENSG00000169598.17" ; ccdsid "CCDS72693.1" ; exon_id "ENSE00003746851.1" ; exon_number 1 ; gene_id "PUM2--DFFB^DFFB^ENSG00000169598.17" ; gene_name DFFB ; gene_type protein_coding ; havana_gene "OTTHUMG00000003525.6" ; hgnc_id "HGNC:2773" ; level 3 ; orig_coord_info "chr1,3857604,3857717,+" ; protein_id "ENSP00000339524.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "PUM2--DFFB^ENST00000338895.7" ; transcript_name "DFFB-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RAB5IF--DLGAP4 ENSEMBL gene 8550 32636 . + . FI_gene_label "DLGAP4^ENSG00000080845.18" ; ID "RAB5IF--DLGAP4^DLGAP4^ENSG00000080845.18" ; exon_id "ENSE00001146805.3" ; exon_number 3 ; gene_id "RAB5IF--DLGAP4^DLGAP4^ENSG00000080845.18" ; gene_name DLGAP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032390.6" ; hgnc_id "HGNC:24476" ; level 3 ; orig_coord_info "chr20,36431718,36432716,+" ; protein_id "ENSP00000341633.5" ; tag basic appris_principal_3 ; transcript_id "RAB5IF--DLGAP4^ENST00000339266.9" ; transcript_name "DLGAP4-201" ; transcript_support_level 5 ; transcript_type protein_coding
RAB5IF--DLGAP4 ENSEMBL mRNA 8550 32636 . + . FI_gene_label "DLGAP4^ENSG00000080845.18" ; ID "RAB5IF--DLGAP4^ENST00000339266.9" ; Parent "RAB5IF--DLGAP4^DLGAP4^ENSG00000080845.18" ; exon_id "ENSE00001146805.3" ; exon_number 3 ; gene_id "RAB5IF--DLGAP4^DLGAP4^ENSG00000080845.18" ; gene_name DLGAP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032390.6" ; hgnc_id "HGNC:24476" ; level 3 ; orig_coord_info "chr20,36431718,36432716,+" ; protein_id "ENSP00000341633.5" ; tag basic appris_principal_3 ; transcript_id "RAB5IF--DLGAP4^ENST00000339266.9" ; transcript_name "DLGAP4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RAB5IF--DLGAP4 HAVANA gene 1044 5504 . + . FI_gene_label "RAB5IF^ENSG00000101084.18" ; ID "RAB5IF--DLGAP4^RAB5IF^ENSG00000101084.18" ; ccdsid "CCDS13279.1" ; exon_id "ENSE00001913552.1" ; exon_number 1 ; gene_id "RAB5IF--DLGAP4^RAB5IF^ENSG00000101084.18" ; gene_name RAB5IF ; gene_type protein_coding ; havana_gene "OTTHUMG00000032384.4" ; havana_transcript "OTTHUMT00000079008.2" ; hgnc_id "HGNC:15870" ; level 1 ; orig_coord_info "chr20,36605952,36606065,+" ; protein_id "ENSP00000341213.3" ; tag basic exp_conf CCDS ; transcript_id "RAB5IF--DLGAP4^ENST00000342422.3" ; transcript_name "RAB5IF-201" ; transcript_support_level 2 ; transcript_type protein_coding
RAB5IF--DLGAP4 HAVANA mRNA 1044 5504 . + . FI_gene_label "RAB5IF^ENSG00000101084.18" ; ID "RAB5IF--DLGAP4^ENST00000342422.3" ; Parent "RAB5IF--DLGAP4^RAB5IF^ENSG00000101084.18" ; ccdsid "CCDS13279.1" ; exon_id "ENSE00001913552.1" ; exon_number 1 ; gene_id "RAB5IF--DLGAP4^RAB5IF^ENSG00000101084.18" ; gene_name RAB5IF ; gene_type protein_coding ; havana_gene "OTTHUMG00000032384.4" ; havana_transcript "OTTHUMT00000079008.2" ; hgnc_id "HGNC:15870" ; level 1 ; orig_coord_info "chr20,36605952,36606065,+" ; protein_id "ENSP00000341213.3" ; tag basic exp_conf CCDS ; transcript_id "RAB5IF--DLGAP4^ENST00000342422.3" ; transcript_name "RAB5IF-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SEM1--PUM1 HAVANA gene 1001 9036 . + . FI_gene_label "SEM1^ENSG00000127922.9" ; ID "SEM1--PUM1^SEM1^ENSG00000127922.9" ; ccdsid "CCDS5646.1" ; exon_id "ENSE00001039676.1" ; exon_number 1 ; gene_id "SEM1--PUM1^SEM1^ENSG00000127922.9" ; gene_name SEM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150680.8" ; havana_transcript "OTTHUMT00000319595.2" ; hgnc_id "HGNC:10845" ; level 2 ; orig_coord_info "chr7,96709688,96709763,-" ; protein_id "ENSP00000248566.2" ; tag basic appris_principal_1 CCDS ; transcript_id "SEM1--PUM1^ENST00000248566.3" ; transcript_name "SEM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SEM1--PUM1 HAVANA mRNA 1001 9036 . + . FI_gene_label "SEM1^ENSG00000127922.9" ; ID "SEM1--PUM1^ENST00000248566.3" ; Parent "SEM1--PUM1^SEM1^ENSG00000127922.9" ; ccdsid "CCDS5646.1" ; exon_id "ENSE00001039676.1" ; exon_number 1 ; gene_id "SEM1--PUM1^SEM1^ENSG00000127922.9" ; gene_name SEM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150680.8" ; havana_transcript "OTTHUMT00000319595.2" ; hgnc_id "HGNC:10845" ; level 2 ; orig_coord_info "chr7,96709688,96709763,-" ; protein_id "ENSP00000248566.2" ; tag basic appris_principal_1 CCDS ; transcript_id "SEM1--PUM1^ENST00000248566.3" ; transcript_name "SEM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SEM1--PUM1 HAVANA gene 36316 65469 . + . FI_gene_label "PUM1^ENSG00000134644.16" ; ID "SEM1--PUM1^PUM1^ENSG00000134644.16" ; ccdsid "CCDS338.1" ; exon_id "ENSE00003607854.1" ; exon_number 2 ; gene_id "SEM1--PUM1^PUM1^ENSG00000134644.16" ; gene_name PUM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003795.5" ; havana_transcript "OTTHUMT00000010671.1" ; hgnc_id "HGNC:14957" ; level 2 ; orig_coord_info "chr1,31059204,31059566,-" ; protein_id "ENSP00000257075.5" ; tag basic appris_principal_4 CCDS ; transcript_id "SEM1--PUM1^ENST00000257075.9" ; transcript_name "PUM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SEM1--PUM1 HAVANA mRNA 36316 65469 . + . FI_gene_label "PUM1^ENSG00000134644.16" ; ID "SEM1--PUM1^ENST00000257075.9" ; Parent "SEM1--PUM1^PUM1^ENSG00000134644.16" ; ccdsid "CCDS338.1" ; exon_id "ENSE00003607854.1" ; exon_number 2 ; gene_id "SEM1--PUM1^PUM1^ENSG00000134644.16" ; gene_name PUM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000003795.5" ; havana_transcript "OTTHUMT00000010671.1" ; hgnc_id "HGNC:14957" ; level 2 ; orig_coord_info "chr1,31059204,31059566,-" ; protein_id "ENSP00000257075.5" ; tag basic appris_principal_4 CCDS ; transcript_id "SEM1--PUM1^ENST00000257075.9" ; transcript_name "PUM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SHROOM4--AP000949.1 HAVANA gene 1001 21333 . + . FI_gene_label "SHROOM4^ENSG00000158352.17" ; ID "SHROOM4--AP000949.1^SHROOM4^ENSG00000158352.17" ; ccdsid "CCDS35277.1" ; exon_id "ENSE00002054722.1" ; exon_number 1 ; gene_id "SHROOM4--AP000949.1^SHROOM4^ENSG00000158352.17" ; gene_name SHROOM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021521.5" ; havana_transcript "OTTHUMT00000056564.4" ; hgnc_id "HGNC:29215" ; level 2 ; orig_coord_info "chrX,50813902,50814018,-" ; protein_id "ENSP00000289292.7" ; tag NMD_exception basic appris_principal_1 CCDS ; transcript_id "SHROOM4--AP000949.1^ENST00000289292.11" ; transcript_name "SHROOM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
SHROOM4--AP000949.1 HAVANA mRNA 1001 21333 . + . FI_gene_label "SHROOM4^ENSG00000158352.17" ; ID "SHROOM4--AP000949.1^ENST00000289292.11" ; Parent "SHROOM4--AP000949.1^SHROOM4^ENSG00000158352.17" ; ccdsid "CCDS35277.1" ; exon_id "ENSE00002054722.1" ; exon_number 1 ; gene_id "SHROOM4--AP000949.1^SHROOM4^ENSG00000158352.17" ; gene_name SHROOM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021521.5" ; havana_transcript "OTTHUMT00000056564.4" ; hgnc_id "HGNC:29215" ; level 2 ; orig_coord_info "chrX,50813902,50814018,-" ; protein_id "ENSP00000289292.7" ; tag NMD_exception basic appris_principal_1 CCDS ; transcript_id "SHROOM4--AP000949.1^ENST00000289292.11" ; transcript_name "SHROOM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SHROOM4--AP001116.1 HAVANA gene 1001 21333 . + . FI_gene_label "SHROOM4^ENSG00000158352.17" ; ID "SHROOM4--AP001116.1^SHROOM4^ENSG00000158352.17" ; ccdsid "CCDS35277.1" ; exon_id "ENSE00002054722.1" ; exon_number 1 ; gene_id "SHROOM4--AP001116.1^SHROOM4^ENSG00000158352.17" ; gene_name SHROOM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021521.5" ; havana_transcript "OTTHUMT00000056564.4" ; hgnc_id "HGNC:29215" ; level 2 ; orig_coord_info "chrX,50813902,50814018,-" ; protein_id "ENSP00000289292.7" ; tag NMD_exception basic appris_principal_1 CCDS ; transcript_id "SHROOM4--AP001116.1^ENST00000289292.11" ; transcript_name "SHROOM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
SHROOM4--AP001116.1 HAVANA mRNA 1001 21333 . + . FI_gene_label "SHROOM4^ENSG00000158352.17" ; ID "SHROOM4--AP001116.1^ENST00000289292.11" ; Parent "SHROOM4--AP001116.1^SHROOM4^ENSG00000158352.17" ; ccdsid "CCDS35277.1" ; exon_id "ENSE00002054722.1" ; exon_number 1 ; gene_id "SHROOM4--AP001116.1^SHROOM4^ENSG00000158352.17" ; gene_name SHROOM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021521.5" ; havana_transcript "OTTHUMT00000056564.4" ; hgnc_id "HGNC:29215" ; level 2 ; orig_coord_info "chrX,50813902,50814018,-" ; protein_id "ENSP00000289292.7" ; tag NMD_exception basic appris_principal_1 CCDS ; transcript_id "SHROOM4--AP001116.1^ENST00000289292.11" ; transcript_name "SHROOM4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC25A25--CLPS HAVANA gene 16401 18742 . + . FI_gene_label "CLPS^ENSG00000137392.10" ; ID "SLC25A25--CLPS^CLPS^ENSG00000137392.10" ; ccdsid "CCDS4811.1" ; exon_id "ENSE00000929524.3" ; exon_number 1 ; gene_id "SLC25A25--CLPS^CLPS^ENSG00000137392.10" ; gene_name CLPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000014578.2" ; havana_transcript "OTTHUMT00000040312.2" ; hgnc_id "HGNC:2085" ; level 2 ; orig_coord_info "chr6,35797205,35797288,-" ; protein_id "ENSP00000259938.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC25A25--CLPS^ENST00000259938.7" ; transcript_name "CLPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC25A25--CLPS HAVANA mRNA 16401 18742 . + . FI_gene_label "CLPS^ENSG00000137392.10" ; ID "SLC25A25--CLPS^ENST00000259938.7" ; Parent "SLC25A25--CLPS^CLPS^ENSG00000137392.10" ; ccdsid "CCDS4811.1" ; exon_id "ENSE00000929524.3" ; exon_number 1 ; gene_id "SLC25A25--CLPS^CLPS^ENSG00000137392.10" ; gene_name CLPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000014578.2" ; havana_transcript "OTTHUMT00000040312.2" ; hgnc_id "HGNC:2085" ; level 2 ; orig_coord_info "chr6,35797205,35797288,-" ; protein_id "ENSP00000259938.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC25A25--CLPS^ENST00000259938.7" ; transcript_name "CLPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC25A25--CLPS HAVANA gene 4007 13379 . + . FI_gene_label "SLC25A25^ENSG00000148339.12" ; ID "SLC25A25--CLPS^SLC25A25^ENSG00000148339.12" ; ccdsid "CCDS6890.1" ; exon_id "ENSE00001878905.1" ; exon_number 1 ; gene_id "SLC25A25--CLPS^SLC25A25^ENSG00000148339.12" ; gene_name SLC25A25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020736.2" ; havana_transcript "OTTHUMT00000054407.1" ; hgnc_id "HGNC:20663" ; level 2 ; orig_coord_info "chr9,128098567,128098725,+" ; protein_id "ENSP00000362155.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SLC25A25--CLPS^ENST00000373064.9" ; transcript_name "SLC25A25-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC25A25--CLPS HAVANA mRNA 4007 13379 . + . FI_gene_label "SLC25A25^ENSG00000148339.12" ; ID "SLC25A25--CLPS^ENST00000373064.9" ; Parent "SLC25A25--CLPS^SLC25A25^ENSG00000148339.12" ; ccdsid "CCDS6890.1" ; exon_id "ENSE00001878905.1" ; exon_number 1 ; gene_id "SLC25A25--CLPS^SLC25A25^ENSG00000148339.12" ; gene_name SLC25A25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020736.2" ; havana_transcript "OTTHUMT00000054407.1" ; hgnc_id "HGNC:20663" ; level 2 ; orig_coord_info "chr9,128098567,128098725,+" ; protein_id "ENSP00000362155.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SLC25A25--CLPS^ENST00000373064.9" ; transcript_name "SLC25A25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC25A25--CLPSL1 HAVANA gene 4007 13379 . + . FI_gene_label "SLC25A25^ENSG00000148339.12" ; ID "SLC25A25--CLPSL1^SLC25A25^ENSG00000148339.12" ; ccdsid "CCDS6890.1" ; exon_id "ENSE00001878905.1" ; exon_number 1 ; gene_id "SLC25A25--CLPSL1^SLC25A25^ENSG00000148339.12" ; gene_name SLC25A25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020736.2" ; havana_transcript "OTTHUMT00000054407.1" ; hgnc_id "HGNC:20663" ; level 2 ; orig_coord_info "chr9,128098567,128098725,+" ; protein_id "ENSP00000362155.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SLC25A25--CLPSL1^ENST00000373064.9" ; transcript_name "SLC25A25-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC25A25--CLPSL1 HAVANA mRNA 4007 13379 . + . FI_gene_label "SLC25A25^ENSG00000148339.12" ; ID "SLC25A25--CLPSL1^ENST00000373064.9" ; Parent "SLC25A25--CLPSL1^SLC25A25^ENSG00000148339.12" ; ccdsid "CCDS6890.1" ; exon_id "ENSE00001878905.1" ; exon_number 1 ; gene_id "SLC25A25--CLPSL1^SLC25A25^ENSG00000148339.12" ; gene_name SLC25A25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020736.2" ; havana_transcript "OTTHUMT00000054407.1" ; hgnc_id "HGNC:20663" ; level 2 ; orig_coord_info "chr9,128098567,128098725,+" ; protein_id "ENSP00000362155.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SLC25A25--CLPSL1^ENST00000373064.9" ; transcript_name "SLC25A25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLC25A25--CLPSL1 HAVANA gene 16380 18723 . + . FI_gene_label "CLPSL1^ENSG00000204140.10" ; ID "SLC25A25--CLPSL1^CLPSL1^ENSG00000204140.10" ; ccdsid "CCDS43456.1" ; exon_id "ENSE00001569343.4" ; exon_number 1 ; gene_id "SLC25A25--CLPSL1^CLPSL1^ENSG00000204140.10" ; gene_name CLPSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014582.3" ; havana_transcript "OTTHUMT00000040317.3" ; hgnc_id "HGNC:21251" ; level 2 ; orig_coord_info "chr6,35781111,35781209,+" ; protein_id "ENSP00000362968.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC25A25--CLPSL1^ENST00000373861.6" ; transcript_name "CLPSL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC25A25--CLPSL1 HAVANA mRNA 16380 18723 . + . FI_gene_label "CLPSL1^ENSG00000204140.10" ; ID "SLC25A25--CLPSL1^ENST00000373861.6" ; Parent "SLC25A25--CLPSL1^CLPSL1^ENSG00000204140.10" ; ccdsid "CCDS43456.1" ; exon_id "ENSE00001569343.4" ; exon_number 1 ; gene_id "SLC25A25--CLPSL1^CLPSL1^ENSG00000204140.10" ; gene_name CLPSL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014582.3" ; havana_transcript "OTTHUMT00000040317.3" ; hgnc_id "HGNC:21251" ; level 2 ; orig_coord_info "chr6,35781111,35781209,+" ; protein_id "ENSP00000362968.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC25A25--CLPSL1^ENST00000373861.6" ; transcript_name "CLPSL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SMARCC2--AL157400.3 HAVANA gene 1020 21002 . + . FI_gene_label "SMARCC2^ENSG00000139613.12" ; ID "SMARCC2--AL157400.3^SMARCC2^ENSG00000139613.12" ; ccdsid "CCDS8907.1" ; exon_id "ENSE00002334427.1" ; exon_number 1 ; gene_id "SMARCC2--AL157400.3^SMARCC2^ENSG00000139613.12" ; gene_name SMARCC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170288.5" ; havana_transcript "OTTHUMT00000408370.1" ; hgnc_id "HGNC:11105" ; level 2 ; orig_coord_info "chr12,56189351,56189461,-" ; protein_id "ENSP00000267064.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "SMARCC2--AL157400.3^ENST00000267064.8" ; transcript_name "SMARCC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMARCC2--AL157400.3 HAVANA mRNA 1020 21002 . + . FI_gene_label "SMARCC2^ENSG00000139613.12" ; ID "SMARCC2--AL157400.3^ENST00000267064.8" ; Parent "SMARCC2--AL157400.3^SMARCC2^ENSG00000139613.12" ; ccdsid "CCDS8907.1" ; exon_id "ENSE00002334427.1" ; exon_number 1 ; gene_id "SMARCC2--AL157400.3^SMARCC2^ENSG00000139613.12" ; gene_name SMARCC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170288.5" ; havana_transcript "OTTHUMT00000408370.1" ; hgnc_id "HGNC:11105" ; level 2 ; orig_coord_info "chr12,56189351,56189461,-" ; protein_id "ENSP00000267064.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "SMARCC2--AL157400.3^ENST00000267064.8" ; transcript_name "SMARCC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WRAP73--DYNLRB1 HAVANA gene 2050 13322 . + . FI_gene_label "WRAP73^ENSG00000116213.16" ; ID "WRAP73--DYNLRB1^WRAP73^ENSG00000116213.16" ; ccdsid "CCDS48.1" ; exon_id "ENSE00001748742.3" ; exon_number 1 ; gene_id "WRAP73--DYNLRB1^WRAP73^ENSG00000116213.16" ; gene_name WRAP73 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000612.6" ; havana_transcript "OTTHUMT00000001470.2" ; hgnc_id "HGNC:12759" ; level 2 ; orig_coord_info "chr1,3649931,3649999,-" ; protein_id "ENSP00000270708.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "WRAP73--DYNLRB1^ENST00000270708.12" ; transcript_name "WRAP73-201" ; transcript_support_level 1 ; transcript_type protein_coding
WRAP73--DYNLRB1 HAVANA mRNA 2050 13322 . + . FI_gene_label "WRAP73^ENSG00000116213.16" ; ID "WRAP73--DYNLRB1^ENST00000270708.12" ; Parent "WRAP73--DYNLRB1^WRAP73^ENSG00000116213.16" ; ccdsid "CCDS48.1" ; exon_id "ENSE00001748742.3" ; exon_number 1 ; gene_id "WRAP73--DYNLRB1^WRAP73^ENSG00000116213.16" ; gene_name WRAP73 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000612.6" ; havana_transcript "OTTHUMT00000001470.2" ; hgnc_id "HGNC:12759" ; level 2 ; orig_coord_info "chr1,3649931,3649999,-" ; protein_id "ENSP00000270708.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "WRAP73--DYNLRB1^ENST00000270708.12" ; transcript_name "WRAP73-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WRAP73--DYNLRB1 HAVANA gene 16356 20234 . + . FI_gene_label "DYNLRB1^ENSG00000125971.17" ; ID "WRAP73--DYNLRB1^DYNLRB1^ENSG00000125971.17" ; exon_id "ENSE00001928730.1" ; exon_number 1 ; gene_id "WRAP73--DYNLRB1^DYNLRB1^ENSG00000125971.17" ; gene_name DYNLRB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032302.2" ; havana_transcript "OTTHUMT00000078792.2" ; hgnc_id "HGNC:15468" ; level 2 ; orig_coord_info "chr20,34516459,34516461,+" ; protein_id "ENSP00000300469.9" ; tag basic ; transcript_id "WRAP73--DYNLRB1^ENST00000300469.13" ; transcript_name "DYNLRB1-201" ; transcript_support_level 5 ; transcript_type protein_coding
WRAP73--DYNLRB1 HAVANA mRNA 16356 20234 . + . FI_gene_label "DYNLRB1^ENSG00000125971.17" ; ID "WRAP73--DYNLRB1^ENST00000300469.13" ; Parent "WRAP73--DYNLRB1^DYNLRB1^ENSG00000125971.17" ; exon_id "ENSE00001928730.1" ; exon_number 1 ; gene_id "WRAP73--DYNLRB1^DYNLRB1^ENSG00000125971.17" ; gene_name DYNLRB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032302.2" ; havana_transcript "OTTHUMT00000078792.2" ; hgnc_id "HGNC:15468" ; level 2 ; orig_coord_info "chr20,34516459,34516461,+" ; protein_id "ENSP00000300469.9" ; tag basic ; transcript_id "WRAP73--DYNLRB1^ENST00000300469.13" ; transcript_name "DYNLRB1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
WRAP73--ITCH HAVANA gene 16397 51106 . + . FI_gene_label "ITCH^ENSG00000078747.16" ; ID "WRAP73--ITCH^ITCH^ENSG00000078747.16" ; ccdsid "CCDS58768.1" ; exon_id "ENSE00003669122.1" ; exon_number 3 ; gene_id "WRAP73--ITCH^ITCH^ENSG00000078747.16" ; gene_name ITCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000032300.6" ; havana_transcript "OTTHUMT00000078783.2" ; hgnc_id "HGNC:13890" ; level 2 ; orig_coord_info "chr20,34393812,34393881,+" ; protein_id "ENSP00000262650.5" ; tag basic CCDS ; transcript_id "WRAP73--ITCH^ENST00000262650.10" ; transcript_name "ITCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
WRAP73--ITCH HAVANA mRNA 16397 51106 . + . FI_gene_label "ITCH^ENSG00000078747.16" ; ID "WRAP73--ITCH^ENST00000262650.10" ; Parent "WRAP73--ITCH^ITCH^ENSG00000078747.16" ; ccdsid "CCDS58768.1" ; exon_id "ENSE00003669122.1" ; exon_number 3 ; gene_id "WRAP73--ITCH^ITCH^ENSG00000078747.16" ; gene_name ITCH ; gene_type protein_coding ; havana_gene "OTTHUMG00000032300.6" ; havana_transcript "OTTHUMT00000078783.2" ; hgnc_id "HGNC:13890" ; level 2 ; orig_coord_info "chr20,34393812,34393881,+" ; protein_id "ENSP00000262650.5" ; tag basic CCDS ; transcript_id "WRAP73--ITCH^ENST00000262650.10" ; transcript_name "ITCH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WRAP73--ITCH HAVANA gene 2050 13322 . + . FI_gene_label "WRAP73^ENSG00000116213.16" ; ID "WRAP73--ITCH^WRAP73^ENSG00000116213.16" ; ccdsid "CCDS48.1" ; exon_id "ENSE00001748742.3" ; exon_number 1 ; gene_id "WRAP73--ITCH^WRAP73^ENSG00000116213.16" ; gene_name WRAP73 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000612.6" ; havana_transcript "OTTHUMT00000001470.2" ; hgnc_id "HGNC:12759" ; level 2 ; orig_coord_info "chr1,3649931,3649999,-" ; protein_id "ENSP00000270708.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "WRAP73--ITCH^ENST00000270708.12" ; transcript_name "WRAP73-201" ; transcript_support_level 1 ; transcript_type protein_coding
WRAP73--ITCH HAVANA mRNA 2050 13322 . + . FI_gene_label "WRAP73^ENSG00000116213.16" ; ID "WRAP73--ITCH^ENST00000270708.12" ; Parent "WRAP73--ITCH^WRAP73^ENSG00000116213.16" ; ccdsid "CCDS48.1" ; exon_id "ENSE00001748742.3" ; exon_number 1 ; gene_id "WRAP73--ITCH^WRAP73^ENSG00000116213.16" ; gene_name WRAP73 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000612.6" ; havana_transcript "OTTHUMT00000001470.2" ; hgnc_id "HGNC:12759" ; level 2 ; orig_coord_info "chr1,3649931,3649999,-" ; protein_id "ENSP00000270708.7" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "WRAP73--ITCH^ENST00000270708.12" ; transcript_name "WRAP73-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC006008.1--ACTR3B HAVANA gene 1001 3113 . + . FI_gene_label "AC006008.1^ENSG00000286912.1" ; ID "AC006008.1--ACTR3B^AC006008.1^ENSG00000286912.1" ; exon_id "ENSE00003876389.1" ; exon_number 1 ; gene_id "AC006008.1--ACTR3B^AC006008.1^ENSG00000286912.1" ; gene_name "AC006008.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195169.1" ; havana_transcript "OTTHUMT00000524931.1" ; level 2 ; orig_coord_info "chr7,150237556,150237608,-" ; tag basic TAGENE ; transcript_id "AC006008.1--ACTR3B^ENST00000653791.1" ; transcript_name "AC006008.1-201" ; transcript_type lncRNA
AC006008.1--ACTR3B HAVANA RNA 1001 3113 . + . FI_gene_label "AC006008.1^ENSG00000286912.1" ; ID "AC006008.1--ACTR3B^ENST00000653791.1" ; Parent "AC006008.1--ACTR3B^AC006008.1^ENSG00000286912.1" ; exon_id "ENSE00003876389.1" ; exon_number 1 ; gene_id "AC006008.1--ACTR3B^AC006008.1^ENSG00000286912.1" ; gene_name "AC006008.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195169.1" ; havana_transcript "OTTHUMT00000524931.1" ; level 2 ; orig_coord_info "chr7,150237556,150237608,-" ; tag basic TAGENE ; transcript_id "AC006008.1--ACTR3B^ENST00000653791.1" ; transcript_name "AC006008.1-201" ; transcript_type lncRNA
L1 and L2 created:
AC092666.1--ACTR3B HAVANA gene 7869 18117 . + . FI_gene_label "AC092666.1^ENSG00000241449.6" ; ID "AC092666.1--ACTR3B^AC092666.1^ENSG00000241449.6" ; exon_id "ENSE00001862759.1" ; exon_number 1 ; gene_id "AC092666.1--ACTR3B^AC092666.1^ENSG00000241449.6" ; gene_name "AC092666.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158149.33" ; havana_transcript "OTTHUMT00000350287.1" ; level 2 ; orig_coord_info "chr7,150040521,150040654,+" ; tag basic ; transcript_id "AC092666.1--ACTR3B^ENST00000492054.5" ; transcript_name "AC092666.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
AC092666.1--ACTR3B HAVANA RNA 7869 18117 . + . FI_gene_label "AC092666.1^ENSG00000241449.6" ; ID "AC092666.1--ACTR3B^ENST00000492054.5" ; Parent "AC092666.1--ACTR3B^AC092666.1^ENSG00000241449.6" ; exon_id "ENSE00001862759.1" ; exon_number 1 ; gene_id "AC092666.1--ACTR3B^AC092666.1^ENSG00000241449.6" ; gene_name "AC092666.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000158149.33" ; havana_transcript "OTTHUMT00000350287.1" ; level 2 ; orig_coord_info "chr7,150040521,150040654,+" ; tag basic ; transcript_id "AC092666.1--ACTR3B^ENST00000492054.5" ; transcript_name "AC092666.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
CRPPA-AS1--PUM1 HAVANA gene 9421 10776 . + . FI_gene_label "CRPPA-AS1^ENSG00000229688.8" ; ID "CRPPA-AS1--PUM1^CRPPA-AS1^ENSG00000229688.8" ; exon_id "ENSE00001623288.1" ; exon_number 1 ; gene_id "CRPPA-AS1--PUM1^CRPPA-AS1^ENSG00000229688.8" ; gene_name "CRPPA-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000152466.4" ; havana_transcript "OTTHUMT00000326297.1" ; hgnc_id "HGNC:48962" ; level 1 ; orig_coord_info "chr7,16269249,16269590,+" ; tag exp_conf ; transcript_id "CRPPA-AS1--PUM1^ENST00000436328.1" ; transcript_name "CRPPA-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
CRPPA-AS1--PUM1 HAVANA RNA 9421 10776 . + . FI_gene_label "CRPPA-AS1^ENSG00000229688.8" ; ID "CRPPA-AS1--PUM1^ENST00000436328.1" ; Parent "CRPPA-AS1--PUM1^CRPPA-AS1^ENSG00000229688.8" ; exon_id "ENSE00001623288.1" ; exon_number 1 ; gene_id "CRPPA-AS1--PUM1^CRPPA-AS1^ENSG00000229688.8" ; gene_name "CRPPA-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000152466.4" ; havana_transcript "OTTHUMT00000326297.1" ; hgnc_id "HGNC:48962" ; level 1 ; orig_coord_info "chr7,16269249,16269590,+" ; tag exp_conf ; transcript_id "CRPPA-AS1--PUM1^ENST00000436328.1" ; transcript_name "CRPPA-AS1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
FAM242C--CBX5 HAVANA gene 1099 2413 . + . FI_gene_label "FAM242C^ENSG00000250432.5" ; ID "FAM242C--CBX5^FAM242C^ENSG00000250432.5" ; exon_id "ENSE00002032791.1" ; exon_number 1 ; gene_id "FAM242C--CBX5^FAM242C^ENSG00000250432.5" ; gene_name FAM242C ; gene_type lncRNA ; havana_gene "OTTHUMG00000160026.1" ; havana_transcript "OTTHUMT00000358942.1" ; hgnc_id "HGNC:53873" ; level 1 ; orig_coord_info "chr12,54125760,54125894,-" ; tag exp_conf ; transcript_id "FAM242C--CBX5^ENST00000504278.1" ; transcript_name "FAM242C-201" ; transcript_support_level 3 ; transcript_type lncRNA
FAM242C--CBX5 HAVANA RNA 1099 2413 . + . FI_gene_label "FAM242C^ENSG00000250432.5" ; ID "FAM242C--CBX5^ENST00000504278.1" ; Parent "FAM242C--CBX5^FAM242C^ENSG00000250432.5" ; exon_id "ENSE00002032791.1" ; exon_number 1 ; gene_id "FAM242C--CBX5^FAM242C^ENSG00000250432.5" ; gene_name FAM242C ; gene_type lncRNA ; havana_gene "OTTHUMG00000160026.1" ; havana_transcript "OTTHUMT00000358942.1" ; hgnc_id "HGNC:53873" ; level 1 ; orig_coord_info "chr12,54125760,54125894,-" ; tag exp_conf ; transcript_id "FAM242C--CBX5^ENST00000504278.1" ; transcript_name "FAM242C-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
KCTD1--AC090772.2 HAVANA gene 21356 22919 . + . FI_gene_label "AC090772.2^ENSG00000265204.1" ; ID "KCTD1--AC090772.2^AC090772.2^ENSG00000265204.1" ; exon_id "ENSE00002730150.1" ; exon_number 1 ; gene_id "KCTD1--AC090772.2^AC090772.2^ENSG00000265204.1" ; gene_name "AC090772.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179405.1" ; havana_transcript "OTTHUMT00000446116.1" ; level 2 ; orig_coord_info "chr18,24099223,24099320,-" ; tag basic ; transcript_id "KCTD1--AC090772.2^ENST00000578443.1" ; transcript_name "AC090772.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
KCTD1--AC090772.2 HAVANA RNA 21356 22919 . + . FI_gene_label "AC090772.2^ENSG00000265204.1" ; ID "KCTD1--AC090772.2^ENST00000578443.1" ; Parent "KCTD1--AC090772.2^AC090772.2^ENSG00000265204.1" ; exon_id "ENSE00002730150.1" ; exon_number 1 ; gene_id "KCTD1--AC090772.2^AC090772.2^ENSG00000265204.1" ; gene_name "AC090772.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000179405.1" ; havana_transcript "OTTHUMT00000446116.1" ; level 2 ; orig_coord_info "chr18,24099223,24099320,-" ; tag basic ; transcript_id "KCTD1--AC090772.2^ENST00000578443.1" ; transcript_name "AC090772.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
NUS1--AC114501.3 HAVANA gene 12660 13027 . + . FI_gene_label "AC114501.3^ENSG00000238124.1" ; ID "NUS1--AC114501.3^AC114501.3^ENSG00000238124.1" ; exon_id "ENSE00001603093.1" ; exon_number 1 ; gene_id "NUS1--AC114501.3^AC114501.3^ENSG00000238124.1" ; gene_name "AC114501.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156731.1" ; havana_transcript "OTTHUMT00000345494.1" ; level 2 ; orig_coord_info "chr7,65463071,65463168,+" ; tag basic ; transcript_id "NUS1--AC114501.3^ENST00000453648.1" ; transcript_name "AC114501.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
NUS1--AC114501.3 HAVANA RNA 12660 13027 . + . FI_gene_label "AC114501.3^ENSG00000238124.1" ; ID "NUS1--AC114501.3^ENST00000453648.1" ; Parent "NUS1--AC114501.3^AC114501.3^ENSG00000238124.1" ; exon_id "ENSE00001603093.1" ; exon_number 1 ; gene_id "NUS1--AC114501.3^AC114501.3^ENSG00000238124.1" ; gene_name "AC114501.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156731.1" ; havana_transcript "OTTHUMT00000345494.1" ; level 2 ; orig_coord_info "chr7,65463071,65463168,+" ; tag basic ; transcript_id "NUS1--AC114501.3^ENST00000453648.1" ; transcript_name "AC114501.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
PIWIL2--NOS2P2 HAVANA gene 30975 35617 . + . FI_gene_label "NOS2P2^ENSG00000167494.9" ; ID "PIWIL2--NOS2P2^NOS2P2^ENSG00000167494.9" ; exon_id "ENSE00003807706.1" ; exon_number 1 ; gene_id "PIWIL2--NOS2P2^NOS2P2^ENSG00000167494.9" ; gene_name NOS2P2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000059253.6" ; havana_transcript "OTTHUMT00000131458.6" ; hgnc_id "HGNC:7874" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,18503075,18503282,-" ; tag basic ; transcript_id "PIWIL2--NOS2P2^ENST00000426269.4" ; transcript_name "NOS2P2-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
PIWIL2--NOS2P2 HAVANA RNA 30975 35617 . + . FI_gene_label "NOS2P2^ENSG00000167494.9" ; ID "PIWIL2--NOS2P2^ENST00000426269.4" ; Parent "PIWIL2--NOS2P2^NOS2P2^ENSG00000167494.9" ; exon_id "ENSE00003807706.1" ; exon_number 1 ; gene_id "PIWIL2--NOS2P2^NOS2P2^ENSG00000167494.9" ; gene_name NOS2P2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000059253.6" ; havana_transcript "OTTHUMT00000131458.6" ; hgnc_id "HGNC:7874" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,18503075,18503282,-" ; tag basic ; transcript_id "PIWIL2--NOS2P2^ENST00000426269.4" ; transcript_name "NOS2P2-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
SHROOM4--AP000949.1 HAVANA gene 24339 25757 . + . FI_gene_label "AP000949.1^ENSG00000225906.1" ; ID "SHROOM4--AP000949.1^AP000949.1^ENSG00000225906.1" ; exon_id "ENSE00001739640.1" ; exon_number 1 ; gene_id "SHROOM4--AP000949.1^AP000949.1^ENSG00000225906.1" ; gene_name "AP000949.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000078254.1" ; havana_transcript "OTTHUMT00000171056.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr21,22882582,22882888,+" ; tag basic ; transcript_id "SHROOM4--AP000949.1^ENST00000438328.1" ; transcript_name "AP000949.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SHROOM4--AP000949.1 HAVANA RNA 24339 25757 . + . FI_gene_label "AP000949.1^ENSG00000225906.1" ; ID "SHROOM4--AP000949.1^ENST00000438328.1" ; Parent "SHROOM4--AP000949.1^AP000949.1^ENSG00000225906.1" ; exon_id "ENSE00001739640.1" ; exon_number 1 ; gene_id "SHROOM4--AP000949.1^AP000949.1^ENSG00000225906.1" ; gene_name "AP000949.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000078254.1" ; havana_transcript "OTTHUMT00000171056.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr21,22882582,22882888,+" ; tag basic ; transcript_id "SHROOM4--AP000949.1^ENST00000438328.1" ; transcript_name "AP000949.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
SHROOM4--AP001116.1 HAVANA gene 24339 29100 . + . FI_gene_label "AP001116.1^ENSG00000230972.1" ; ID "SHROOM4--AP001116.1^AP001116.1^ENSG00000230972.1" ; exon_id "ENSE00001649771.1" ; exon_number 1 ; gene_id "SHROOM4--AP001116.1^AP001116.1^ENSG00000230972.1" ; gene_name "AP001116.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000078253.1" ; havana_transcript "OTTHUMT00000171055.1" ; level 2 ; orig_coord_info "chr21,23065491,23065669,+" ; tag basic ; transcript_id "SHROOM4--AP001116.1^ENST00000421604.1" ; transcript_name "AP001116.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
SHROOM4--AP001116.1 HAVANA RNA 24339 29100 . + . FI_gene_label "AP001116.1^ENSG00000230972.1" ; ID "SHROOM4--AP001116.1^ENST00000421604.1" ; Parent "SHROOM4--AP001116.1^AP001116.1^ENSG00000230972.1" ; exon_id "ENSE00001649771.1" ; exon_number 1 ; gene_id "SHROOM4--AP001116.1^AP001116.1^ENSG00000230972.1" ; gene_name "AP001116.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000078253.1" ; havana_transcript "OTTHUMT00000171055.1" ; level 2 ; orig_coord_info "chr21,23065491,23065669,+" ; tag basic ; transcript_id "SHROOM4--AP001116.1^ENST00000421604.1" ; transcript_name "AP001116.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
SMARCC2--AL157400.3 HAVANA gene 26164 32227 . + . FI_gene_label "AL157400.3^ENSG00000235100.4" ; ID "SMARCC2--AL157400.3^AL157400.3^ENSG00000235100.4" ; exon_id "ENSE00001669643.1" ; exon_number 1 ; gene_id "SMARCC2--AL157400.3^AL157400.3^ENSG00000235100.4" ; gene_name "AL157400.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000184077.2" ; havana_transcript "OTTHUMT00000467989.1" ; level 2 ; orig_coord_info "chr10,89699524,89699671,-" ; transcript_id "SMARCC2--AL157400.3^ENST00000449882.2" ; transcript_name "AL157400.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
SMARCC2--AL157400.3 HAVANA RNA 26164 32227 . + . FI_gene_label "AL157400.3^ENSG00000235100.4" ; ID "SMARCC2--AL157400.3^ENST00000449882.2" ; Parent "SMARCC2--AL157400.3^AL157400.3^ENSG00000235100.4" ; exon_id "ENSE00001669643.1" ; exon_number 1 ; gene_id "SMARCC2--AL157400.3^AL157400.3^ENSG00000235100.4" ; gene_name "AL157400.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000184077.2" ; havana_transcript "OTTHUMT00000467989.1" ; level 2 ; orig_coord_info "chr10,89699524,89699671,-" ; transcript_id "SMARCC2--AL157400.3^ENST00000449882.2" ; transcript_name "AL157400.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
725 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1444 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 56 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 1 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed