Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/b56068063ec66c92172b8ac5fe67ac/aih-tih-sc-00d05f-R1_A23WJ53LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/5f93a39e7bd4ad2726401797bcfc15/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/5f93a39e7bd4ad2726401797bcfc15/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory