Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/32565e1355a6010a747c7c410a9a10/aih-tih-sc-5e5452-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/e3d319e208e1ff26984eb33adb5349/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/e3d319e208e1ff26984eb33adb5349/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
Processed 1000000 records
Processed 2000000 records
Processed 3000000 records
Processed 4000000 records
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Processed 10000000 records
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Processed 27000000 records
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Processed 30000000 records
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Processed 35000000 records
Processed 36000000 records
Processed 37000000 records
Processed 38000000 records
Processed 39000000 records
Processed 40000000 records
Processed 41000000 records
Processed 42000000 records
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Processed 45000000 records
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Processed 50000000 records
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Processed 69000000 records
Processed 70000000 records
Processed 71000000 records
Processed 72000000 records
Processed 73000000 records
Processed 74000000 records
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Processed 76000000 records
Processed 77000000 records
Processed 78000000 records
Processed 79000000 records
Processed 80000000 records
Processed 81000000 records
Processed 82000000 records
Processed 83000000 records
Processed 84000000 records
Processed 85000000 records
Processed 86000000 records
Processed 87000000 records
Processed 88000000 records
Processed 89000000 records
Processed 90000000 records
Processed 91000000 records
Processed 92000000 records
Processed 93000000 records
Processed 94000000 records
Processed 95000000 records
Processed 96000000 records
Processed 97000000 records
Processed 98000000 records
Processed 99000000 records
Processed 100000000 records
Processed 101000000 records
Processed 102000000 records
Processed 103000000 records
Processed 104000000 records
Processed 105000000 records
Processed 106000000 records
Processed 107000000 records
Processed 108000000 records
Processed 109000000 records
Processed 110000000 records
Processed 111000000 records
Processed 112000000 records
Processed 113000000 records
Processed 114000000 records
Processed 115000000 records
Processed 116000000 records
Processed 117000000 records
Processed 118000000 records
Processed 119000000 records
Processed 120000000 records
Processed 121000000 records
Processed 122000000 records
Processed 123000000 records
Processed 124000000 records
Processed 125000000 records
Processed 126000000 records
Processed 127000000 records
Processed 128000000 records
Processed 129000000 records
Processed 130000000 records
Processed 131000000 records
Processed 132000000 records
Processed 133000000 records
Processed 134000000 records
Processed 135000000 records
Processed 136000000 records
Processed 137000000 records
Processed 138000000 records
Processed 139000000 records
Processed 140000000 records
Processed 141000000 records
Processed 142000000 records
Processed 143000000 records
Processed 144000000 records
Processed 145000000 records
Processed 146000000 records
Processed 147000000 records
Processed 148000000 records
Processed 149000000 records
Processed 150000000 records
Processed 151000000 records
Processed 152000000 records
Processed 153000000 records
Processed 154000000 records
Processed 155000000 records
Processed 156000000 records
Processed 157000000 records
Processed 158000000 records
Processed 159000000 records
Processed 160000000 records
Processed 161000000 records
Processed 162000000 records
Processed 163000000 records
Processed 164000000 records
Processed 165000000 records
Processed 166000000 records
Processed 167000000 records
Processed 168000000 records
Processed 169000000 records
Processed 170000000 records
Processed 171000000 records
Processed 172000000 records
Processed 173000000 records
Processed 174000000 records
Processed 175000000 records
Processed 176000000 records
Processed 177000000 records
Processed 178000000 records
Processed 179000000 records
Processed 180000000 records
Processed 181000000 records
Processed 182000000 records
Processed 183000000 records
Processed 184000000 records
Processed 185000000 records
Processed 186000000 records
Processed 187000000 records
Processed 188000000 records
Processed 189000000 records
Processed 190000000 records
Processed 191000000 records
Processed 192000000 records
Processed 193000000 records
Processed 194000000 records
Processed 195000000 records
Processed 196000000 records
Processed 197000000 records
Processed 198000000 records
Processed 199000000 records
Processed 200000000 records
Processed 201000000 records
Processed 202000000 records
Processed 203000000 records
Processed 204000000 records
Processed 205000000 records
Processed 206000000 records
Processed 207000000 records
Processed 208000000 records
Processed 209000000 records
Processed 210000000 records
Processed 211000000 records
Processed 212000000 records
Processed 213000000 records
Processed 214000000 records
Processed 215000000 records
Processed 216000000 records
Processed 217000000 records
Processed 218000000 records
Processed 219000000 records
Processed 220000000 records
Processed 221000000 records
Processed 222000000 records
Processed 223000000 records
Processed 224000000 records
Processed 225000000 records
Processed 226000000 records
Processed 227000000 records
Processed 228000000 records
Processed 229000000 records
Processed 230000000 records
Processed 231000000 records
Processed 232000000 records
Processed 233000000 records
Processed 234000000 records
Processed 235000000 records
Processed 236000000 records
Processed 237000000 records
Processed 238000000 records
Processed 239000000 records
Processed 240000000 records
Processed 241000000 records
Processed 242000000 records
Processed 243000000 records
Processed 244000000 records
Processed 245000000 records
Processed 246000000 records
Processed 247000000 records
Processed 248000000 records
Processed 249000000 records
Processed 250000000 records
Processed 251000000 records
Processed 252000000 records
Processed 253000000 records
Processed 254000000 records
Processed 255000000 records
Processed 256000000 records
Processed 257000000 records
Processed 258000000 records
Processed 259000000 records
Processed 260000000 records
Processed 261000000 records
Processed 262000000 records
Processed 263000000 records
Processed 264000000 records
Processed 265000000 records
Processed 266000000 records
Processed 267000000 records
Processed 268000000 records
paired = 133241676
unpaired = 2357351
MERGED PAIRED END READS = 133241676
MATES PROCESSED = 268840703
TOTAL READS     = 135599027
DISTINCT READS  = 2.92618e+07
DISTINCT COUNTS = 1228
MAX COUNT       = 366917
COUNTS OF 1     = 7.72171e+06
MAX TERMS       = 100
OBSERVED COUNTS (366918)
1	7721709
2	4908035
3	3800577
4	2969572
5	2290289
6	1747186
7	1321975
8	991617
9	746241
10	562144
11	426504
12	324882
13	250539
14	194309
15	153802
16	121744
17	97533
18	79855
19	65750
20	54511
21	46054
22	38849
23	33593
24	28994
25	25129
26	21701
27	19312
28	17117
29	14964
30	13162
31	11866
32	10457
33	9562
34	8530
35	7784
36	6890
37	6195
38	5641
39	5120
40	4666
41	4328
42	3838
43	3649
44	3383
45	3178
46	2919
47	2668
48	2459
49	2373
50	2208
51	2073
52	1937
53	1885
54	1883
55	1671
56	1598
57	1567
58	1380
59	1299
60	1294
61	1262
62	1244
63	1144
64	1028
65	1024
66	1034
67	924
68	963
69	889
70	848
71	783
72	875
73	796
74	716
75	773
76	680
77	706
78	689
79	604
80	611
81	615
82	572
83	577
84	543
85	530
86	510
87	493
88	494
89	461
90	432
91	460
92	421
93	383
94	427
95	441
96	399
97	359
98	416
99	348
100	374
101	341
102	336
103	334
104	326
105	327
106	341
107	287
108	275
109	265
110	245
111	261
112	260
113	269
114	275
115	229
116	224
117	236
118	223
119	225
120	225
121	216
122	213
123	201
124	194
125	179
126	193
127	216
128	198
129	176
130	178
131	207
132	191
133	168
134	185
135	160
136	177
137	173
138	125
139	158
140	142
141	139
142	150
143	142
144	142
145	154
146	138
147	153
148	121
149	117
150	151
151	124
152	151
153	141
154	107
155	113
156	116
157	127
158	117
159	100
160	108
161	121
162	103
163	115
164	95
165	90
166	96
167	114
168	94
169	91
170	107
171	82
172	94
173	112
174	88
175	79
176	88
177	90
178	81
179	80
180	88
181	86
182	89
183	85
184	85
185	72
186	74
187	71
188	77
189	85
190	88
191	86
192	55
193	70
194	65
195	54
196	78
197	72
198	50
199	62
200	55
201	53
202	56
203	67
204	55
205	63
206	61
207	58
208	45
209	66
210	48
211	62
212	61
213	48
214	63
215	42
216	57
217	51
218	45
219	61
220	59
221	43
222	53
223	56
224	46
225	52
226	47
227	57
228	43
229	52
230	40
231	44
232	46
233	29
234	35
235	48
236	43
237	41
238	40
239	48
240	45
241	40
242	41
243	36
244	46
245	31
246	50
247	38
248	40
249	39
250	33
251	37
252	36
253	47
254	22
255	34
256	29
257	32
258	29
259	33
260	38
261	36
262	34
263	31
264	36
265	25
266	36
267	30
268	18
269	27
270	23
271	36
272	26
273	30
274	25
275	22
276	34
277	22
278	20
279	38
280	38
281	29
282	23
283	21
284	23
285	34
286	22
287	26
288	31
289	27
290	30
291	26
292	16
293	18
294	28
295	16
296	20
297	31
298	23
299	27
300	21
301	26
302	18
303	21
304	20
305	18
306	23
307	14
308	21
309	29
310	16
311	24
312	26
313	23
314	24
315	25
316	17
317	19
318	21
319	22
320	27
321	15
322	20
323	25
324	11
325	20
326	23
327	16
328	17
329	22
330	9
331	24
332	18
333	13
334	18
335	16
336	15
337	22
338	9
339	15
340	14
341	21
342	14
343	20
344	17
345	6
346	16
347	15
348	14
349	21
350	15
351	15
352	17
353	15
354	12
355	16
356	17
357	17
358	11
359	17
360	16
361	15
362	15
363	10
364	13
365	14
366	13
367	11
368	14
369	14
370	12
371	7
372	13
373	12
374	12
375	15
376	9
377	5
378	13
379	10
380	5
381	14
382	23
383	8
384	11
385	13
386	18
387	9
388	18
389	11
390	10
391	10
392	5
393	7
394	12
395	10
396	12
397	8
398	10
399	10
400	15
401	9
402	12
403	7
404	16
405	6
406	14
407	12
408	8
409	8
410	8
411	7
412	10
413	12
414	5
415	9
416	11
417	14
418	8
419	8
420	13
421	9
422	8
423	12
424	11
425	7
426	12
427	7
428	15
429	6
430	6
431	10
432	12
433	10
434	7
435	3
436	10
437	6
438	11
439	7
440	12
441	8
442	5
443	5
444	7
445	8
446	12
447	6
448	17
449	8
450	5
451	7
452	12
453	9
454	6
455	4
456	7
457	12
458	3
459	16
460	4
461	4
462	7
463	4
464	4
465	7
466	9
467	5
468	8
469	9
470	5
471	7
472	7
473	8
474	5
475	4
476	12
477	4
478	9
479	11
480	6
481	7
482	9
483	10
484	6
485	8
486	7
487	8
488	7
489	9
490	7
491	6
492	5
493	5
494	5
495	5
496	8
497	3
498	13
499	7
500	4
501	4
502	9
503	7
504	13
505	8
506	4
507	10
508	9
509	5
510	6
511	3
512	1
513	4
514	5
515	8
516	12
517	5
518	1
519	8
520	4
521	5
522	1
523	9
524	8
525	3
526	1
527	9
528	2
529	5
530	4
531	6
532	7
533	8
535	8
536	4
538	5
539	7
540	5
541	4
542	5
543	2
544	3
545	6
546	9
547	4
548	9
549	7
550	8
551	5
552	4
553	5
554	9
555	8
556	1
557	2
558	7
559	3
560	3
561	7
562	4
563	2
564	2
565	5
566	4
567	10
568	3
569	2
570	3
571	6
572	7
573	3
574	6
575	5
576	5
578	7
579	3
580	5
581	3
582	9
583	3
584	5
585	8
586	2
587	4
588	5
589	4
590	3
591	2
592	7
593	7
594	2
595	4
596	4
597	2
598	4
599	7
600	7
601	4
602	2
603	3
604	4
605	4
606	1
607	3
608	2
609	5
610	4
611	2
612	8
613	3
614	3
615	4
616	5
617	2
618	5
619	3
620	4
621	2
622	1
623	4
624	7
625	3
626	2
627	6
628	6
629	5
630	1
631	3
632	4
633	3
634	2
635	2
636	2
637	4
638	3
639	4
640	3
641	5
642	5
643	1
644	3
645	3
646	5
647	3
648	3
649	7
650	2
651	4
653	6
654	6
655	4
656	2
657	3
658	4
659	4
660	2
661	4
662	1
663	4
664	4
665	3
668	2
669	5
670	5
671	3
672	4
673	4
674	3
675	4
676	1
677	2
678	3
679	2
680	3
681	5
682	2
683	8
685	3
686	1
687	4
688	1
689	4
690	3
691	2
692	1
693	1
694	2
695	3
696	4
697	3
698	3
699	1
700	3
701	5
702	1
704	3
705	1
706	3
707	2
708	3
709	2
711	5
712	2
713	2
714	2
715	3
716	1
717	1
718	1
719	6
720	2
721	2
722	3
723	1
724	2
725	1
726	2
727	3
728	1
729	1
730	2
731	1
732	3
733	3
735	4
737	2
738	1
739	1
740	1
741	2
742	2
743	1
744	1
745	1
746	2
747	3
748	3
749	4
750	2
752	2
755	3
756	1
757	2
758	3
759	1
760	3
761	4
762	1
763	1
765	1
766	4
767	1
768	4
770	1
771	1
772	1
773	2
774	2
775	1
776	1
778	1
779	2
781	1
782	5
783	2
784	3
785	4
786	4
787	3
788	2
790	3
791	1
792	1
794	2
795	3
796	2
797	3
799	3
800	2
802	3
803	1
804	1
805	2
806	1
807	2
808	3
809	2
810	1
811	1
812	3
813	4
814	1
816	1
817	2
818	3
819	1
820	1
821	3
822	2
823	2
824	1
825	1
826	2
827	1
828	3
829	2
831	2
832	1
833	3
834	1
835	1
836	3
837	1
838	2
839	2
840	1
841	3
842	1
843	1
844	2
846	3
847	4
849	1
852	3
853	2
854	3
856	1
857	2
858	1
859	2
861	3
862	4
863	2
864	1
865	2
866	3
867	2
869	1
870	4
872	1
873	2
874	2
875	2
876	3
878	2
879	2
880	2
882	1
883	3
884	1
885	2
887	1
888	1
889	3
890	1
892	4
893	2
897	1
898	1
901	2
902	1
903	4
905	3
909	2
910	1
911	1
912	2
913	2
914	1
917	1
919	2
923	3
924	1
926	2
927	2
933	2
934	3
936	1
937	2
938	1
939	2
941	3
944	1
946	4
947	1
948	3
949	1
950	2
951	1
953	5
955	2
957	2
959	2
960	2
962	1
964	4
965	1
967	1
968	1
969	3
970	3
971	1
972	1
976	1
978	1
980	1
983	2
984	3
987	2
989	1
990	2
992	2
993	3
998	1
999	2
1002	1
1003	1
1008	2
1009	1
1011	2
1012	1
1014	1
1015	1
1016	1
1017	1
1018	3
1019	1
1020	1
1022	1
1023	1
1024	1
1029	2
1030	1
1032	1
1033	1
1034	1
1038	1
1043	1
1047	2
1048	1
1049	1
1052	1
1053	1
1056	1
1058	2
1060	1
1062	1
1064	1
1065	1
1067	2
1069	2
1070	1
1073	1
1074	1
1075	1
1078	1
1081	1
1082	1
1086	1
1087	2
1089	1
1090	2
1095	1
1096	1
1098	3
1102	1
1103	1
1107	2
1109	1
1111	1
1112	2
1113	1
1116	1
1117	1
1123	2
1127	2
1128	2
1129	1
1130	2
1131	1
1132	1
1134	1
1136	1
1142	1
1144	2
1148	1
1149	1
1151	2
1152	1
1155	2
1156	1
1160	1
1162	1
1165	2
1166	1
1168	1
1169	2
1174	2
1175	1
1183	1
1185	1
1187	1
1188	1
1189	2
1191	3
1203	1
1206	1
1216	1
1223	1
1226	1
1228	1
1235	1
1238	1
1239	1
1240	2
1242	1
1243	1
1244	1
1245	2
1246	2
1250	2
1252	1
1254	1
1255	2
1263	1
1265	1
1267	1
1271	1
1272	1
1277	1
1279	1
1280	1
1283	2
1286	1
1293	2
1295	1
1297	2
1298	1
1301	1
1305	1
1306	1
1307	1
1308	1
1321	1
1329	1
1332	1
1335	2
1337	1
1338	1
1339	1
1341	1
1343	1
1345	1
1347	1
1352	1
1354	1
1356	1
1358	1
1362	1
1364	1
1367	1
1368	1
1379	1
1383	1
1386	1
1390	2
1406	1
1410	1
1411	2
1416	1
1419	1
1423	1
1430	1
1435	1
1448	1
1458	1
1464	1
1467	1
1474	1
1476	1
1482	1
1487	1
1488	1
1492	1
1497	1
1499	1
1501	1
1503	2
1504	1
1511	1
1515	1
1518	1
1519	1
1529	1
1532	1
1537	1
1544	1
1546	1
1552	1
1555	1
1577	1
1579	1
1581	2
1582	1
1584	1
1590	1
1591	2
1595	2
1614	1
1617	1
1621	1
1636	1
1643	1
1644	1
1646	1
1649	1
1656	1
1661	1
1665	1
1685	1
1705	1
1713	1
1717	1
1734	1
1736	1
1738	1
1744	2
1760	1
1768	1
1784	1
1791	1
1792	1
1801	1
1813	1
1823	1
1827	1
1833	2
1836	1
1842	1
1844	1
1871	1
1873	1
1874	1
1875	1
1884	1
1911	1
1913	1
1919	1
1965	1
1969	1
1978	1
1989	1
1996	1
1997	1
2005	1
2030	1
2035	2
2039	1
2044	1
2068	1
2090	1
2093	1
2101	1
2114	1
2158	1
2163	1
2195	1
2221	1
2228	1
2234	1
2236	1
2260	1
2277	1
2341	1
2343	1
2358	1
2360	1
2361	1
2385	1
2388	1
2417	1
2426	1
2429	1
2431	1
2438	1
2449	1
2475	1
2488	1
2516	1
2528	1
2534	1
2601	1
2608	1
2660	1
2670	1
2727	1
2741	1
2760	1
2835	1
2852	1
2910	1
2973	1
3005	1
3098	1
3149	1
3188	1
3307	1
3338	1
3357	1
3414	1
3419	1
3425	1
3537	1
3807	1
3931	1
4079	1
4364	1
5311	1
5379	1
5419	1
5640	1
6457	1
6489	1
6494	1
6900	1
9355	1
14582	1
366917	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........................._..............................................
._...._........................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]