File Info

Filename
aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/634be424d910e31b5cd0f516a38eb6/aih-tih-sc-09b6a3-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:50:22
                             Started mapping on |	Jun 08 07:52:45
                                    Finished on |	Jun 08 08:24:20
       Mapping speed, Million of reads per hour |	439.21

                          Number of input reads |	231195931
                      Average input read length |	227
                                    UNIQUE READS:
                   Uniquely mapped reads number |	219545847
                        Uniquely mapped reads % |	94.96%
                          Average mapped length |	226.75
                       Number of splices: Total |	195695245
            Number of splices: Annotated (sjdb) |	193164858
                       Number of splices: GT/AG |	193753884
                       Number of splices: GC/AG |	1365350
                       Number of splices: AT/AC |	157320
               Number of splices: Non-canonical |	418691
                      Mismatch rate per base, % |	0.32%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.01
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.46
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7550037
             % of reads mapped to multiple loci |	3.27%
        Number of reads mapped to too many loci |	239632
             % of reads mapped to too many loci |	0.10%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	295561
       % of reads unmapped: too many mismatches |	0.13%
            Number of reads unmapped: too short |	1712207
                 % of reads unmapped: too short |	0.74%
                Number of reads unmapped: other |	211720
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2831845
                            % of chimeric reads |	1.22%