Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 10208
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 10208
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:10208
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC183088.3--OR4N4C HAVANA gene 7766 8890 . + . FI_gene_label "OR4N4C^ENSG00000279408.3" ; ID "AC183088.3--OR4N4C^OR4N4C^ENSG00000279408.3" ; exon_id "ENSE00003760045.1" ; exon_number 1 ; gene_id "AC183088.3--OR4N4C^OR4N4C^ENSG00000279408.3" ; gene_name OR4N4C ; gene_type protein_coding ; havana_gene "OTTHUMG00000190198.1" ; havana_transcript "OTTHUMT00000484169.1" ; hgnc_id "HGNC:55110" ; level 2 ; orig_coord_info "chr15,21651935,21652882,+" ; protein_id "ENSP00000485668.1" ; tag basic appris_principal_1 ; transcript_id "AC183088.3--OR4N4C^ENST00000623441.1" ; transcript_name "OR4N4C-201" ; transcript_support_level NA ; transcript_type protein_coding
AC183088.3--OR4N4C HAVANA mRNA 7766 8890 . + . FI_gene_label "OR4N4C^ENSG00000279408.3" ; ID "AC183088.3--OR4N4C^ENST00000623441.1" ; Parent "AC183088.3--OR4N4C^OR4N4C^ENSG00000279408.3" ; exon_id "ENSE00003760045.1" ; exon_number 1 ; gene_id "AC183088.3--OR4N4C^OR4N4C^ENSG00000279408.3" ; gene_name OR4N4C ; gene_type protein_coding ; havana_gene "OTTHUMG00000190198.1" ; havana_transcript "OTTHUMT00000484169.1" ; hgnc_id "HGNC:55110" ; level 2 ; orig_coord_info "chr15,21651935,21652882,+" ; protein_id "ENSP00000485668.1" ; tag basic appris_principal_1 ; transcript_id "AC183088.3--OR4N4C^ENST00000623441.1" ; transcript_name "OR4N4C-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
ARIH1--NR2E3 HAVANA gene 1001 36443 . + . FI_gene_label "ARIH1^ENSG00000166233.15" ; ID "ARIH1--NR2E3^ARIH1^ENSG00000166233.15" ; ccdsid "CCDS10244.1" ; exon_id "ENSE00001179017.6" ; exon_number 1 ; gene_id "ARIH1--NR2E3^ARIH1^ENSG00000166233.15" ; gene_name ARIH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133474.5" ; havana_transcript "OTTHUMT00000257350.3" ; hgnc_id "HGNC:689" ; level 2 ; orig_coord_info "chr15,72474640,72475014,+" ; protein_id "ENSP00000369217.4" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARIH1--NR2E3^ENST00000379887.9" ; transcript_name "ARIH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ARIH1--NR2E3 HAVANA mRNA 1001 36443 . + . FI_gene_label "ARIH1^ENSG00000166233.15" ; ID "ARIH1--NR2E3^ENST00000379887.9" ; Parent "ARIH1--NR2E3^ARIH1^ENSG00000166233.15" ; ccdsid "CCDS10244.1" ; exon_id "ENSE00001179017.6" ; exon_number 1 ; gene_id "ARIH1--NR2E3^ARIH1^ENSG00000166233.15" ; gene_name ARIH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133474.5" ; havana_transcript "OTTHUMT00000257350.3" ; hgnc_id "HGNC:689" ; level 2 ; orig_coord_info "chr15,72474640,72475014,+" ; protein_id "ENSP00000369217.4" ; tag RNA_Seq_supported_partial basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARIH1--NR2E3^ENST00000379887.9" ; transcript_name "ARIH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ARIH1--NR2E3 HAVANA gene 42786 48955 . + . FI_gene_label "NR2E3^ENSG00000278570.5" ; ID "ARIH1--NR2E3^NR2E3^ENSG00000278570.5" ; ccdsid "CCDS73750.1" ; exon_id "ENSE00003723408.1" ; exon_number 1 ; gene_id "ARIH1--NR2E3^NR2E3^ENSG00000278570.5" ; gene_name NR2E3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172841.6" ; havana_transcript "OTTHUMT00000420821.3" ; hgnc_id "HGNC:7974" ; level 2 ; orig_coord_info "chr15,71810744,71810861,+" ; protein_id "ENSP00000482504.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARIH1--NR2E3^ENST00000617575.5" ; transcript_name "NR2E3-202" ; transcript_support_level 1 ; transcript_type protein_coding
ARIH1--NR2E3 HAVANA mRNA 42786 48955 . + . FI_gene_label "NR2E3^ENSG00000278570.5" ; ID "ARIH1--NR2E3^ENST00000617575.5" ; Parent "ARIH1--NR2E3^NR2E3^ENSG00000278570.5" ; ccdsid "CCDS73750.1" ; exon_id "ENSE00003723408.1" ; exon_number 1 ; gene_id "ARIH1--NR2E3^NR2E3^ENSG00000278570.5" ; gene_name NR2E3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172841.6" ; havana_transcript "OTTHUMT00000420821.3" ; hgnc_id "HGNC:7974" ; level 2 ; orig_coord_info "chr15,71810744,71810861,+" ; protein_id "ENSP00000482504.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ARIH1--NR2E3^ENST00000617575.5" ; transcript_name "NR2E3-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BSDC1--MAST2 HAVANA gene 1306 15488 . + . FI_gene_label "BSDC1^ENSG00000160058.19" ; ID "BSDC1--MAST2^BSDC1^ENSG00000160058.19" ; ccdsid "CCDS72752.1" ; exon_id "ENSE00001874482.1" ; exon_number 1 ; gene_id "BSDC1--MAST2^BSDC1^ENSG00000160058.19" ; gene_name BSDC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007588.7" ; havana_transcript "OTTHUMT00000020058.2" ; hgnc_id "HGNC:25501" ; level 2 ; orig_coord_info "chr1,32394404,32394414,-" ; protein_id "ENSP00000344816.7" ; tag basic CCDS ; transcript_id "BSDC1--MAST2^ENST00000341071.11" ; transcript_name "BSDC1-201" ; transcript_support_level 2 ; transcript_type protein_coding
BSDC1--MAST2 HAVANA mRNA 1306 15488 . + . FI_gene_label "BSDC1^ENSG00000160058.19" ; ID "BSDC1--MAST2^ENST00000341071.11" ; Parent "BSDC1--MAST2^BSDC1^ENSG00000160058.19" ; ccdsid "CCDS72752.1" ; exon_id "ENSE00001874482.1" ; exon_number 1 ; gene_id "BSDC1--MAST2^BSDC1^ENSG00000160058.19" ; gene_name BSDC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007588.7" ; havana_transcript "OTTHUMT00000020058.2" ; hgnc_id "HGNC:25501" ; level 2 ; orig_coord_info "chr1,32394404,32394414,-" ; protein_id "ENSP00000344816.7" ; tag basic CCDS ; transcript_id "BSDC1--MAST2^ENST00000341071.11" ; transcript_name "BSDC1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
BSDC1--MAST2 HAVANA gene 20173 49487 . + . FI_gene_label "MAST2^ENSG00000086015.22" ; ID "BSDC1--MAST2^MAST2^ENSG00000086015.22" ; ccdsid "CCDS41326.1" ; exon_id "ENSE00002687770.2" ; exon_number 1 ; gene_id "BSDC1--MAST2^MAST2^ENSG00000086015.22" ; gene_name MAST2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008007.7" ; havana_transcript "OTTHUMT00000021977.2" ; hgnc_id "HGNC:19035" ; level 2 ; orig_coord_info "chr1,45803896,45804072,+" ; protein_id "ENSP00000354671.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BSDC1--MAST2^ENST00000361297.7" ; transcript_name "MAST2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BSDC1--MAST2 HAVANA mRNA 20173 49487 . + . FI_gene_label "MAST2^ENSG00000086015.22" ; ID "BSDC1--MAST2^ENST00000361297.7" ; Parent "BSDC1--MAST2^MAST2^ENSG00000086015.22" ; ccdsid "CCDS41326.1" ; exon_id "ENSE00002687770.2" ; exon_number 1 ; gene_id "BSDC1--MAST2^MAST2^ENSG00000086015.22" ; gene_name MAST2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000008007.7" ; havana_transcript "OTTHUMT00000021977.2" ; hgnc_id "HGNC:19035" ; level 2 ; orig_coord_info "chr1,45803896,45804072,+" ; protein_id "ENSP00000354671.2" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "BSDC1--MAST2^ENST00000361297.7" ; transcript_name "MAST2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARMIL1--ALDH5A1 HAVANA gene 1297 44153 . + . FI_gene_label "CARMIL1^ENSG00000079691.18" ; ID "CARMIL1--ALDH5A1^CARMIL1^ENSG00000079691.18" ; ccdsid "CCDS54973.1" ; exon_id "ENSE00001836916.2" ; exon_number 1 ; gene_id "CARMIL1--ALDH5A1^CARMIL1^ENSG00000079691.18" ; gene_name CARMIL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014393.6" ; havana_transcript "OTTHUMT00000040045.3" ; hgnc_id "HGNC:21581" ; level 1 ; orig_coord_info "chr6,25279796,25279835,+" ; protein_id "ENSP00000331983.6" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "CARMIL1--ALDH5A1^ENST00000329474.7" ; transcript_name "CARMIL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARMIL1--ALDH5A1 HAVANA mRNA 1297 44153 . + . FI_gene_label "CARMIL1^ENSG00000079691.18" ; ID "CARMIL1--ALDH5A1^ENST00000329474.7" ; Parent "CARMIL1--ALDH5A1^CARMIL1^ENSG00000079691.18" ; ccdsid "CCDS54973.1" ; exon_id "ENSE00001836916.2" ; exon_number 1 ; gene_id "CARMIL1--ALDH5A1^CARMIL1^ENSG00000079691.18" ; gene_name CARMIL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014393.6" ; havana_transcript "OTTHUMT00000040045.3" ; hgnc_id "HGNC:21581" ; level 1 ; orig_coord_info "chr6,25279796,25279835,+" ; protein_id "ENSP00000331983.6" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "CARMIL1--ALDH5A1^ENST00000329474.7" ; transcript_name "CARMIL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CARMIL1--ALDH5A1 HAVANA gene 47256 61990 . + . FI_gene_label "ALDH5A1^ENSG00000112294.14" ; ID "CARMIL1--ALDH5A1^ALDH5A1^ENSG00000112294.14" ; ccdsid "CCDS4556.1" ; exon_id "ENSE00000928795.1" ; exon_number 1 ; gene_id "CARMIL1--ALDH5A1^ALDH5A1^ENSG00000112294.14" ; gene_name ALDH5A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014356.5" ; havana_transcript "OTTHUMT00000353913.1" ; hgnc_id "HGNC:408" ; level 2 ; orig_coord_info "chr6,24494997,24495350,+" ; protein_id "ENSP00000314649.3" ; tag basic CCDS ; transcript_id "CARMIL1--ALDH5A1^ENST00000348925.2" ; transcript_name "ALDH5A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CARMIL1--ALDH5A1 HAVANA mRNA 47256 61990 . + . FI_gene_label "ALDH5A1^ENSG00000112294.14" ; ID "CARMIL1--ALDH5A1^ENST00000348925.2" ; Parent "CARMIL1--ALDH5A1^ALDH5A1^ENSG00000112294.14" ; ccdsid "CCDS4556.1" ; exon_id "ENSE00000928795.1" ; exon_number 1 ; gene_id "CARMIL1--ALDH5A1^ALDH5A1^ENSG00000112294.14" ; gene_name ALDH5A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014356.5" ; havana_transcript "OTTHUMT00000353913.1" ; hgnc_id "HGNC:408" ; level 2 ; orig_coord_info "chr6,24494997,24495350,+" ; protein_id "ENSP00000314649.3" ; tag basic CCDS ; transcript_id "CARMIL1--ALDH5A1^ENST00000348925.2" ; transcript_name "ALDH5A1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CASZ1--AJAP1 HAVANA gene 1001 21524 . + . FI_gene_label "CASZ1^ENSG00000130940.15" ; ID "CASZ1--AJAP1^CASZ1^ENSG00000130940.15" ; ccdsid "CCDS120.2" ; exon_id "ENSE00003613107.1" ; exon_number 4 ; gene_id "CASZ1--AJAP1^CASZ1^ENSG00000130940.15" ; gene_name CASZ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002035.6" ; havana_transcript "OTTHUMT00000005671.2" ; hgnc_id "HGNC:26002" ; level 2 ; orig_coord_info "chr1,10693874,10693889,-" ; protein_id "ENSP00000339445.5" ; tag basic CCDS ; transcript_id "CASZ1--AJAP1^ENST00000344008.5" ; transcript_name "CASZ1-201" ; transcript_support_level 2 ; transcript_type protein_coding
CASZ1--AJAP1 HAVANA mRNA 1001 21524 . + . FI_gene_label "CASZ1^ENSG00000130940.15" ; ID "CASZ1--AJAP1^ENST00000344008.5" ; Parent "CASZ1--AJAP1^CASZ1^ENSG00000130940.15" ; ccdsid "CCDS120.2" ; exon_id "ENSE00003613107.1" ; exon_number 4 ; gene_id "CASZ1--AJAP1^CASZ1^ENSG00000130940.15" ; gene_name CASZ1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002035.6" ; havana_transcript "OTTHUMT00000005671.2" ; hgnc_id "HGNC:26002" ; level 2 ; orig_coord_info "chr1,10693874,10693889,-" ; protein_id "ENSP00000339445.5" ; tag basic CCDS ; transcript_id "CASZ1--AJAP1^ENST00000344008.5" ; transcript_name "CASZ1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CASZ1--AJAP1 HAVANA gene 33591 41718 . + . FI_gene_label "AJAP1^ENSG00000196581.11" ; ID "CASZ1--AJAP1^AJAP1^ENSG00000196581.11" ; ccdsid "CCDS54.1" ; exon_id "ENSE00001847222.1" ; exon_number 1 ; gene_id "CASZ1--AJAP1^AJAP1^ENSG00000196581.11" ; gene_name AJAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000645.7" ; havana_transcript "OTTHUMT00000001543.4" ; hgnc_id "HGNC:30801" ; level 2 ; orig_coord_info "chr1,4655426,4655454,+" ; protein_id "ENSP00000367432.3" ; tag NMD_exception basic appris_principal_1 CCDS ; transcript_id "CASZ1--AJAP1^ENST00000378190.7" ; transcript_name "AJAP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
CASZ1--AJAP1 HAVANA mRNA 33591 41718 . + . FI_gene_label "AJAP1^ENSG00000196581.11" ; ID "CASZ1--AJAP1^ENST00000378190.7" ; Parent "CASZ1--AJAP1^AJAP1^ENSG00000196581.11" ; ccdsid "CCDS54.1" ; exon_id "ENSE00001847222.1" ; exon_number 1 ; gene_id "CASZ1--AJAP1^AJAP1^ENSG00000196581.11" ; gene_name AJAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000000645.7" ; havana_transcript "OTTHUMT00000001543.4" ; hgnc_id "HGNC:30801" ; level 2 ; orig_coord_info "chr1,4655426,4655454,+" ; protein_id "ENSP00000367432.3" ; tag NMD_exception basic appris_principal_1 CCDS ; transcript_id "CASZ1--AJAP1^ENST00000378190.7" ; transcript_name "AJAP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CBX3--AC005165.3 HAVANA gene 1001 10097 . + . FI_gene_label "CBX3^ENSG00000122565.19" ; ID "CBX3--AC005165.3^CBX3^ENSG00000122565.19" ; ccdsid "CCDS5398.1" ; exon_id "ENSE00001433792.1" ; exon_number 2 ; gene_id "CBX3--AC005165.3^CBX3^ENSG00000122565.19" ; gene_name CBX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022911.6" ; havana_transcript "OTTHUMT00000214117.1" ; hgnc_id "HGNC:1553" ; level 2 ; orig_coord_info "chr7,26202999,26203022,+" ; protein_id "ENSP00000336687.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CBX3--AC005165.3^ENST00000337620.8" ; transcript_name "CBX3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CBX3--AC005165.3 HAVANA mRNA 1001 10097 . + . FI_gene_label "CBX3^ENSG00000122565.19" ; ID "CBX3--AC005165.3^ENST00000337620.8" ; Parent "CBX3--AC005165.3^CBX3^ENSG00000122565.19" ; ccdsid "CCDS5398.1" ; exon_id "ENSE00001433792.1" ; exon_number 2 ; gene_id "CBX3--AC005165.3^CBX3^ENSG00000122565.19" ; gene_name CBX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022911.6" ; havana_transcript "OTTHUMT00000214117.1" ; hgnc_id "HGNC:1553" ; level 2 ; orig_coord_info "chr7,26202999,26203022,+" ; protein_id "ENSP00000336687.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CBX3--AC005165.3^ENST00000337620.8" ; transcript_name "CBX3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CBX3--AC018706.1 HAVANA gene 1001 10097 . + . FI_gene_label "CBX3^ENSG00000122565.19" ; ID "CBX3--AC018706.1^CBX3^ENSG00000122565.19" ; ccdsid "CCDS5398.1" ; exon_id "ENSE00001433792.1" ; exon_number 2 ; gene_id "CBX3--AC018706.1^CBX3^ENSG00000122565.19" ; gene_name CBX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022911.6" ; havana_transcript "OTTHUMT00000214117.1" ; hgnc_id "HGNC:1553" ; level 2 ; orig_coord_info "chr7,26202999,26203022,+" ; protein_id "ENSP00000336687.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CBX3--AC018706.1^ENST00000337620.8" ; transcript_name "CBX3-201" ; transcript_support_level 1 ; transcript_type protein_coding
CBX3--AC018706.1 HAVANA mRNA 1001 10097 . + . FI_gene_label "CBX3^ENSG00000122565.19" ; ID "CBX3--AC018706.1^ENST00000337620.8" ; Parent "CBX3--AC018706.1^CBX3^ENSG00000122565.19" ; ccdsid "CCDS5398.1" ; exon_id "ENSE00001433792.1" ; exon_number 2 ; gene_id "CBX3--AC018706.1^CBX3^ENSG00000122565.19" ; gene_name CBX3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022911.6" ; havana_transcript "OTTHUMT00000214117.1" ; hgnc_id "HGNC:1553" ; level 2 ; orig_coord_info "chr7,26202999,26203022,+" ; protein_id "ENSP00000336687.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CBX3--AC018706.1^ENST00000337620.8" ; transcript_name "CBX3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHRNA4--PTEN HAVANA gene 10572 22910 . + . FI_gene_label "CHRNA4^ENSG00000101204.18" ; ID "CHRNA4--PTEN^CHRNA4^ENSG00000101204.18" ; ccdsid "CCDS13517.1" ; exon_id "ENSE00001922679.3" ; exon_number 1 ; gene_id "CHRNA4--PTEN^CHRNA4^ENSG00000101204.18" ; gene_name CHRNA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033080.8" ; havana_transcript "OTTHUMT00000080508.6" ; hgnc_id "HGNC:1958" ; level 2 ; orig_coord_info "chr20,63361090,63361165,-" ; protein_id "ENSP00000359285.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CHRNA4--PTEN^ENST00000370263.9" ; transcript_name "CHRNA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHRNA4--PTEN HAVANA mRNA 10572 22910 . + . FI_gene_label "CHRNA4^ENSG00000101204.18" ; ID "CHRNA4--PTEN^ENST00000370263.9" ; Parent "CHRNA4--PTEN^CHRNA4^ENSG00000101204.18" ; ccdsid "CCDS13517.1" ; exon_id "ENSE00001922679.3" ; exon_number 1 ; gene_id "CHRNA4--PTEN^CHRNA4^ENSG00000101204.18" ; gene_name CHRNA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033080.8" ; havana_transcript "OTTHUMT00000080508.6" ; hgnc_id "HGNC:1958" ; level 2 ; orig_coord_info "chr20,63361090,63361165,-" ; protein_id "ENSP00000359285.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CHRNA4--PTEN^ENST00000370263.9" ; transcript_name "CHRNA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CHRNA4--PTEN HAVANA gene 25911 45570 . + . FI_gene_label "PTEN^ENSG00000171862.11" ; ID "CHRNA4--PTEN^PTEN^ENSG00000171862.11" ; ccdsid "CCDS31238.1" ; exon_id "ENSE00001456562.4" ; exon_number 1 ; gene_id "CHRNA4--PTEN^PTEN^ENSG00000171862.11" ; gene_name PTEN ; gene_type protein_coding ; havana_gene "OTTHUMG00000018688.3" ; havana_transcript "OTTHUMT00000049241.2" ; hgnc_id "HGNC:9588" ; level 2 ; orig_coord_info "chr10,87864470,87864548,+" ; protein_id "ENSP00000361021.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CHRNA4--PTEN^ENST00000371953.8" ; transcript_name "PTEN-201" ; transcript_support_level 1 ; transcript_type protein_coding
CHRNA4--PTEN HAVANA mRNA 25911 45570 . + . FI_gene_label "PTEN^ENSG00000171862.11" ; ID "CHRNA4--PTEN^ENST00000371953.8" ; Parent "CHRNA4--PTEN^PTEN^ENSG00000171862.11" ; ccdsid "CCDS31238.1" ; exon_id "ENSE00001456562.4" ; exon_number 1 ; gene_id "CHRNA4--PTEN^PTEN^ENSG00000171862.11" ; gene_name PTEN ; gene_type protein_coding ; havana_gene "OTTHUMG00000018688.3" ; havana_transcript "OTTHUMT00000049241.2" ; hgnc_id "HGNC:9588" ; level 2 ; orig_coord_info "chr10,87864470,87864548,+" ; protein_id "ENSP00000361021.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CHRNA4--PTEN^ENST00000371953.8" ; transcript_name "PTEN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSNK1E--TMEM184B HAVANA gene 1001 16158 . + . FI_gene_label "CSNK1E^ENSG00000213923.13" ; ID "CSNK1E--TMEM184B^CSNK1E^ENSG00000213923.13" ; ccdsid "CCDS13970.1" ; exon_id "ENSE00003893001.1" ; exon_number 2 ; gene_id "CSNK1E--TMEM184B^CSNK1E^ENSG00000213923.13" ; gene_name CSNK1E ; gene_type protein_coding ; havana_gene "OTTHUMG00000151135.7" ; havana_transcript "OTTHUMT00000321462.1" ; hgnc_id "HGNC:2453" ; level 2 ; orig_coord_info "chr22,38314082,38314157,-" ; protein_id "ENSP00000352929.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CSNK1E--TMEM184B^ENST00000359867.7" ; transcript_name "CSNK1E-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSNK1E--TMEM184B HAVANA mRNA 1001 16158 . + . FI_gene_label "CSNK1E^ENSG00000213923.13" ; ID "CSNK1E--TMEM184B^ENST00000359867.7" ; Parent "CSNK1E--TMEM184B^CSNK1E^ENSG00000213923.13" ; ccdsid "CCDS13970.1" ; exon_id "ENSE00003893001.1" ; exon_number 2 ; gene_id "CSNK1E--TMEM184B^CSNK1E^ENSG00000213923.13" ; gene_name CSNK1E ; gene_type protein_coding ; havana_gene "OTTHUMG00000151135.7" ; havana_transcript "OTTHUMT00000321462.1" ; hgnc_id "HGNC:2453" ; level 2 ; orig_coord_info "chr22,38314082,38314157,-" ; protein_id "ENSP00000352929.3" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CSNK1E--TMEM184B^ENST00000359867.7" ; transcript_name "CSNK1E-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CSNK1E--TMEM184B HAVANA gene 19505 34187 . + . FI_gene_label "TMEM184B^ENSG00000198792.13" ; ID "CSNK1E--TMEM184B^TMEM184B^ENSG00000198792.13" ; ccdsid "CCDS13969.2" ; exon_id "ENSE00003458707.1" ; exon_number 2 ; gene_id "CSNK1E--TMEM184B^TMEM184B^ENSG00000198792.13" ; gene_name TMEM184B ; gene_type protein_coding ; havana_gene "OTTHUMG00000030557.18" ; havana_transcript "OTTHUMT00000157101.2" ; hgnc_id "HGNC:1310" ; level 2 ; orig_coord_info "chr22,38247770,38247961,-" ; protein_id "ENSP00000354441.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CSNK1E--TMEM184B^ENST00000361684.8" ; transcript_name "TMEM184B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CSNK1E--TMEM184B HAVANA mRNA 19505 34187 . + . FI_gene_label "TMEM184B^ENSG00000198792.13" ; ID "CSNK1E--TMEM184B^ENST00000361684.8" ; Parent "CSNK1E--TMEM184B^TMEM184B^ENSG00000198792.13" ; ccdsid "CCDS13969.2" ; exon_id "ENSE00003458707.1" ; exon_number 2 ; gene_id "CSNK1E--TMEM184B^TMEM184B^ENSG00000198792.13" ; gene_name TMEM184B ; gene_type protein_coding ; havana_gene "OTTHUMG00000030557.18" ; havana_transcript "OTTHUMT00000157101.2" ; hgnc_id "HGNC:1310" ; level 2 ; orig_coord_info "chr22,38247770,38247961,-" ; protein_id "ENSP00000354441.4" ; tag basic appris_principal_1 CCDS ; transcript_id "CSNK1E--TMEM184B^ENST00000361684.8" ; transcript_name "TMEM184B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPG5--C6 HAVANA gene 57540 80557 . + . FI_gene_label "C6^ENSG00000039537.14" ; ID "EPG5--C6^C6^ENSG00000039537.14" ; ccdsid "CCDS3936.1" ; exon_id "ENSE00002205138.1" ; exon_number 2 ; gene_id "EPG5--C6^C6^ENSG00000039537.14" ; gene_name C6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000094781.6" ; havana_transcript "OTTHUMT00000211592.1" ; hgnc_id "HGNC:1339" ; level 2 ; orig_coord_info "chr5,41203088,41203230,-" ; protein_id "ENSP00000263413.3" ; tag basic appris_principal_1 CCDS ; transcript_id "EPG5--C6^ENST00000263413.7" ; transcript_name "C6-201" ; transcript_support_level 1 ; transcript_type protein_coding
EPG5--C6 HAVANA mRNA 57540 80557 . + . FI_gene_label "C6^ENSG00000039537.14" ; ID "EPG5--C6^ENST00000263413.7" ; Parent "EPG5--C6^C6^ENSG00000039537.14" ; ccdsid "CCDS3936.1" ; exon_id "ENSE00002205138.1" ; exon_number 2 ; gene_id "EPG5--C6^C6^ENSG00000039537.14" ; gene_name C6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000094781.6" ; havana_transcript "OTTHUMT00000211592.1" ; hgnc_id "HGNC:1339" ; level 2 ; orig_coord_info "chr5,41203088,41203230,-" ; protein_id "ENSP00000263413.3" ; tag basic appris_principal_1 CCDS ; transcript_id "EPG5--C6^ENST00000263413.7" ; transcript_name "C6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EPG5--C6 HAVANA gene 1001 54539 . + . FI_gene_label "EPG5^ENSG00000152223.15" ; ID "EPG5--C6^EPG5^ENSG00000152223.15" ; ccdsid "CCDS11926.2" ; exon_id "ENSE00003497721.3" ; exon_number 1 ; gene_id "EPG5--C6^EPG5^ENSG00000152223.15" ; gene_name EPG5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132626.6" ; havana_transcript "OTTHUMT00000501366.2" ; hgnc_id "HGNC:29331" ; level 2 ; orig_coord_info "chr18,45967177,45967239,-" ; protein_id "ENSP00000282041.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "EPG5--C6^ENST00000282041.11" ; transcript_name "EPG5-201" ; transcript_support_level 1 ; transcript_type protein_coding
EPG5--C6 HAVANA mRNA 1001 54539 . + . FI_gene_label "EPG5^ENSG00000152223.15" ; ID "EPG5--C6^ENST00000282041.11" ; Parent "EPG5--C6^EPG5^ENSG00000152223.15" ; ccdsid "CCDS11926.2" ; exon_id "ENSE00003497721.3" ; exon_number 1 ; gene_id "EPG5--C6^EPG5^ENSG00000152223.15" ; gene_name EPG5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132626.6" ; havana_transcript "OTTHUMT00000501366.2" ; hgnc_id "HGNC:29331" ; level 2 ; orig_coord_info "chr18,45967177,45967239,-" ; protein_id "ENSP00000282041.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "EPG5--C6^ENST00000282041.11" ; transcript_name "EPG5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM172A--MCTP1 HAVANA gene 25624 58692 . + . FI_gene_label "MCTP1^ENSG00000175471.19" ; ID "FAM172A--MCTP1^MCTP1^ENSG00000175471.19" ; ccdsid "CCDS47247.1" ; exon_id "ENSE00002037878.1" ; exon_number 1 ; gene_id "FAM172A--MCTP1^MCTP1^ENSG00000175471.19" ; gene_name MCTP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162742.8" ; havana_transcript "OTTHUMT00000370287.2" ; hgnc_id "HGNC:26183" ; level 2 ; orig_coord_info "chr5,95081426,95081482,-" ; protein_id "ENSP00000308957.8" ; tag basic appris_principal_4 CCDS ; transcript_id "FAM172A--MCTP1^ENST00000312216.12" ; transcript_name "MCTP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM172A--MCTP1 HAVANA mRNA 25624 58692 . + . FI_gene_label "MCTP1^ENSG00000175471.19" ; ID "FAM172A--MCTP1^ENST00000312216.12" ; Parent "FAM172A--MCTP1^MCTP1^ENSG00000175471.19" ; ccdsid "CCDS47247.1" ; exon_id "ENSE00002037878.1" ; exon_number 1 ; gene_id "FAM172A--MCTP1^MCTP1^ENSG00000175471.19" ; gene_name MCTP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162742.8" ; havana_transcript "OTTHUMT00000370287.2" ; hgnc_id "HGNC:26183" ; level 2 ; orig_coord_info "chr5,95081426,95081482,-" ; protein_id "ENSP00000308957.8" ; tag basic appris_principal_4 CCDS ; transcript_id "FAM172A--MCTP1^ENST00000312216.12" ; transcript_name "MCTP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FAM172A--MCTP1 HAVANA gene 1037 18415 . + . FI_gene_label "FAM172A^ENSG00000113391.19" ; ID "FAM172A--MCTP1^FAM172A^ENSG00000113391.19" ; ccdsid "CCDS4069.1" ; exon_id "ENSE00003655593.1" ; exon_number 2 ; gene_id "FAM172A--MCTP1^FAM172A^ENSG00000113391.19" ; gene_name FAM172A ; gene_type protein_coding ; havana_gene "OTTHUMG00000131329.5" ; havana_transcript "OTTHUMT00000254100.4" ; hgnc_id "HGNC:25365" ; level 2 ; orig_coord_info "chr5,94074646,94074751,-" ; protein_id "ENSP00000379294.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "FAM172A--MCTP1^ENST00000395965.8" ; transcript_name "FAM172A-201" ; transcript_support_level 1 ; transcript_type protein_coding
FAM172A--MCTP1 HAVANA mRNA 1037 18415 . + . FI_gene_label "FAM172A^ENSG00000113391.19" ; ID "FAM172A--MCTP1^ENST00000395965.8" ; Parent "FAM172A--MCTP1^FAM172A^ENSG00000113391.19" ; ccdsid "CCDS4069.1" ; exon_id "ENSE00003655593.1" ; exon_number 2 ; gene_id "FAM172A--MCTP1^FAM172A^ENSG00000113391.19" ; gene_name FAM172A ; gene_type protein_coding ; havana_gene "OTTHUMG00000131329.5" ; havana_transcript "OTTHUMT00000254100.4" ; hgnc_id "HGNC:25365" ; level 2 ; orig_coord_info "chr5,94074646,94074751,-" ; protein_id "ENSP00000379294.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "FAM172A--MCTP1^ENST00000395965.8" ; transcript_name "FAM172A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FOXP4--AL136967.2 HAVANA gene 1001 19593 . + . FI_gene_label "FOXP4^ENSG00000137166.17" ; ID "FOXP4--AL136967.2^FOXP4^ENSG00000137166.17" ; ccdsid "CCDS34447.1" ; exon_id "ENSE00001459438.1" ; exon_number 2 ; gene_id "FOXP4--AL136967.2^FOXP4^ENSG00000137166.17" ; gene_name FOXP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014679.9" ; havana_transcript "OTTHUMT00000106767.1" ; hgnc_id "HGNC:20842" ; level 2 ; orig_coord_info "chr6,41565761,41565964,+" ; protein_id "ENSP00000309823.4" ; tag inferred_exon_combination basic MANE_Select appris_principal_4 CCDS ; transcript_id "FOXP4--AL136967.2^ENST00000307972.10" ; transcript_name "FOXP4-201" ; transcript_support_level 1 ; transcript_type protein_coding
FOXP4--AL136967.2 HAVANA mRNA 1001 19593 . + . FI_gene_label "FOXP4^ENSG00000137166.17" ; ID "FOXP4--AL136967.2^ENST00000307972.10" ; Parent "FOXP4--AL136967.2^FOXP4^ENSG00000137166.17" ; ccdsid "CCDS34447.1" ; exon_id "ENSE00001459438.1" ; exon_number 2 ; gene_id "FOXP4--AL136967.2^FOXP4^ENSG00000137166.17" ; gene_name FOXP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014679.9" ; havana_transcript "OTTHUMT00000106767.1" ; hgnc_id "HGNC:20842" ; level 2 ; orig_coord_info "chr6,41565761,41565964,+" ; protein_id "ENSP00000309823.4" ; tag inferred_exon_combination basic MANE_Select appris_principal_4 CCDS ; transcript_id "FOXP4--AL136967.2^ENST00000307972.10" ; transcript_name "FOXP4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FOXP4--FOXP4-AS1 HAVANA gene 1001 19593 . + . FI_gene_label "FOXP4^ENSG00000137166.17" ; ID "FOXP4--FOXP4-AS1^FOXP4^ENSG00000137166.17" ; ccdsid "CCDS34447.1" ; exon_id "ENSE00001459438.1" ; exon_number 2 ; gene_id "FOXP4--FOXP4-AS1^FOXP4^ENSG00000137166.17" ; gene_name FOXP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014679.9" ; havana_transcript "OTTHUMT00000106767.1" ; hgnc_id "HGNC:20842" ; level 2 ; orig_coord_info "chr6,41565761,41565964,+" ; protein_id "ENSP00000309823.4" ; tag inferred_exon_combination basic MANE_Select appris_principal_4 CCDS ; transcript_id "FOXP4--FOXP4-AS1^ENST00000307972.10" ; transcript_name "FOXP4-201" ; transcript_support_level 1 ; transcript_type protein_coding
FOXP4--FOXP4-AS1 HAVANA mRNA 1001 19593 . + . FI_gene_label "FOXP4^ENSG00000137166.17" ; ID "FOXP4--FOXP4-AS1^ENST00000307972.10" ; Parent "FOXP4--FOXP4-AS1^FOXP4^ENSG00000137166.17" ; ccdsid "CCDS34447.1" ; exon_id "ENSE00001459438.1" ; exon_number 2 ; gene_id "FOXP4--FOXP4-AS1^FOXP4^ENSG00000137166.17" ; gene_name FOXP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014679.9" ; havana_transcript "OTTHUMT00000106767.1" ; hgnc_id "HGNC:20842" ; level 2 ; orig_coord_info "chr6,41565761,41565964,+" ; protein_id "ENSP00000309823.4" ; tag inferred_exon_combination basic MANE_Select appris_principal_4 CCDS ; transcript_id "FOXP4--FOXP4-AS1^ENST00000307972.10" ; transcript_name "FOXP4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
FSIP1--AC013652.1 HAVANA mRNA 1001 15962 . + . FI_gene_label "FSIP1^ENSG00000150667.8" ; ID "FSIP1--AC013652.1^ENST00000350221.4" ; Parent "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; ccdsid "CCDS10050.1" ; exon_id "ENSE00003574039.1" ; exon_number 2 ; gene_id "FSIP1--AC013652.1^FSIP1^ENSG00000150667.8" ; gene_name FSIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172456.3" ; havana_transcript "OTTHUMT00000252118.4" ; hgnc_id "HGNC:21674" ; level 2 ; orig_coord_info "chr15,39776399,39776524,-" ; protein_id "ENSP00000280236.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FSIP1--AC013652.1^ENST00000350221.4" ; transcript_name "FSIP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IMPDH1--AC090114.3 HAVANA gene 1271 12838 . + . FI_gene_label "IMPDH1^ENSG00000106348.18" ; ID "IMPDH1--AC090114.3^IMPDH1^ENSG00000106348.18" ; ccdsid "CCDS34749.1" ; exon_id "ENSE00003561746.1" ; exon_number 1 ; gene_id "IMPDH1--AC090114.3^IMPDH1^ENSG00000106348.18" ; gene_name IMPDH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157713.5" ; havana_transcript "OTTHUMT00000349458.2" ; hgnc_id "HGNC:6052" ; level 2 ; orig_coord_info "chr7,128409756,128409901,-" ; protein_id "ENSP00000345096.6" ; tag basic MANE_Select CCDS ; transcript_id "IMPDH1--AC090114.3^ENST00000338791.11" ; transcript_name "IMPDH1-201" ; transcript_support_level 2 ; transcript_type protein_coding
IMPDH1--AC090114.3 HAVANA mRNA 1271 12838 . + . FI_gene_label "IMPDH1^ENSG00000106348.18" ; ID "IMPDH1--AC090114.3^ENST00000338791.11" ; Parent "IMPDH1--AC090114.3^IMPDH1^ENSG00000106348.18" ; ccdsid "CCDS34749.1" ; exon_id "ENSE00003561746.1" ; exon_number 1 ; gene_id "IMPDH1--AC090114.3^IMPDH1^ENSG00000106348.18" ; gene_name IMPDH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157713.5" ; havana_transcript "OTTHUMT00000349458.2" ; hgnc_id "HGNC:6052" ; level 2 ; orig_coord_info "chr7,128409756,128409901,-" ; protein_id "ENSP00000345096.6" ; tag basic MANE_Select CCDS ; transcript_id "IMPDH1--AC090114.3^ENST00000338791.11" ; transcript_name "IMPDH1-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
INPP5A--MAST1 HAVANA gene 23231 41373 . + . FI_gene_label "MAST1^ENSG00000105613.10" ; ID "INPP5A--MAST1^MAST1^ENSG00000105613.10" ; ccdsid "CCDS32921.1" ; exon_id "ENSE00002893290.2" ; exon_number 1 ; gene_id "INPP5A--MAST1^MAST1^ENSG00000105613.10" ; gene_name MAST1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180514.4" ; havana_transcript "OTTHUMT00000451733.3" ; hgnc_id "HGNC:19034" ; level 2 ; orig_coord_info "chr19,12838573,12838655,+" ; protein_id "ENSP00000251472.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "INPP5A--MAST1^ENST00000251472.9" ; transcript_name "MAST1-201" ; transcript_support_level 1 ; transcript_type protein_coding
INPP5A--MAST1 HAVANA mRNA 23231 41373 . + . FI_gene_label "MAST1^ENSG00000105613.10" ; ID "INPP5A--MAST1^ENST00000251472.9" ; Parent "INPP5A--MAST1^MAST1^ENSG00000105613.10" ; ccdsid "CCDS32921.1" ; exon_id "ENSE00002893290.2" ; exon_number 1 ; gene_id "INPP5A--MAST1^MAST1^ENSG00000105613.10" ; gene_name MAST1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180514.4" ; havana_transcript "OTTHUMT00000451733.3" ; hgnc_id "HGNC:19034" ; level 2 ; orig_coord_info "chr19,12838573,12838655,+" ; protein_id "ENSP00000251472.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "INPP5A--MAST1^ENST00000251472.9" ; transcript_name "MAST1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
INPP5A--MAST1 HAVANA gene 2397 15201 . + . FI_gene_label "INPP5A^ENSG00000068383.19" ; ID "INPP5A--MAST1^INPP5A^ENSG00000068383.19" ; exon_id "ENSE00001635546.1" ; exon_number 1 ; gene_id "INPP5A--MAST1^INPP5A^ENSG00000068383.19" ; gene_name INPP5A ; gene_type protein_coding ; havana_gene "OTTHUMG00000019293.6" ; havana_transcript "OTTHUMT00000051087.2" ; hgnc_id "HGNC:6076" ; level 2 ; orig_coord_info "chr10,132607926,132607956,+" ; protein_id "ENSP00000340707.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "INPP5A--MAST1^ENST00000342652.6" ; transcript_name "INPP5A-201" ; transcript_support_level 5 ; transcript_type protein_coding
INPP5A--MAST1 HAVANA mRNA 2397 15201 . + . FI_gene_label "INPP5A^ENSG00000068383.19" ; ID "INPP5A--MAST1^ENST00000342652.6" ; Parent "INPP5A--MAST1^INPP5A^ENSG00000068383.19" ; exon_id "ENSE00001635546.1" ; exon_number 1 ; gene_id "INPP5A--MAST1^INPP5A^ENSG00000068383.19" ; gene_name INPP5A ; gene_type protein_coding ; havana_gene "OTTHUMG00000019293.6" ; havana_transcript "OTTHUMT00000051087.2" ; hgnc_id "HGNC:6076" ; level 2 ; orig_coord_info "chr10,132607926,132607956,+" ; protein_id "ENSP00000340707.6" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "INPP5A--MAST1^ENST00000342652.6" ; transcript_name "INPP5A-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LARGE2--LINC02716 ENSEMBL gene 2158 8327 . + . FI_gene_label "LARGE2^ENSG00000165905.18" ; ID "LARGE2--LINC02716^LARGE2^ENSG00000165905.18" ; ccdsid "CCDS31473.1" ; exon_id "ENSE00001771999.1" ; exon_number 1 ; gene_id "LARGE2--LINC02716^LARGE2^ENSG00000165905.18" ; gene_name LARGE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167037.2" ; hgnc_id "HGNC:16522" ; level 3 ; orig_coord_info "chr11,45922883,45923167,+" ; protein_id "ENSP00000324570.5" ; tag basic appris_principal_2 CCDS ; transcript_id "LARGE2--LINC02716^ENST00000325468.9" ; transcript_name "LARGE2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LARGE2--LINC02716 ENSEMBL mRNA 2158 8327 . + . FI_gene_label "LARGE2^ENSG00000165905.18" ; ID "LARGE2--LINC02716^ENST00000325468.9" ; Parent "LARGE2--LINC02716^LARGE2^ENSG00000165905.18" ; ccdsid "CCDS31473.1" ; exon_id "ENSE00001771999.1" ; exon_number 1 ; gene_id "LARGE2--LINC02716^LARGE2^ENSG00000165905.18" ; gene_name LARGE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167037.2" ; hgnc_id "HGNC:16522" ; level 3 ; orig_coord_info "chr11,45922883,45923167,+" ; protein_id "ENSP00000324570.5" ; tag basic appris_principal_2 CCDS ; transcript_id "LARGE2--LINC02716^ENST00000325468.9" ; transcript_name "LARGE2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LARGE2--SLC35C1 HAVANA gene 12405 16833 . + . FI_gene_label "SLC35C1^ENSG00000181830.9" ; ID "LARGE2--SLC35C1^SLC35C1^ENSG00000181830.9" ; ccdsid "CCDS7914.1" ; exon_id "ENSE00001252340.8" ; exon_number 1 ; gene_id "LARGE2--SLC35C1^SLC35C1^ENSG00000181830.9" ; gene_name SLC35C1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166519.3" ; havana_transcript "OTTHUMT00000390139.2" ; hgnc_id "HGNC:20197" ; level 2 ; orig_coord_info "chr11,45805802,45806336,+" ; protein_id "ENSP00000313318.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LARGE2--SLC35C1^ENST00000314134.4" ; transcript_name "SLC35C1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LARGE2--SLC35C1 HAVANA mRNA 12405 16833 . + . FI_gene_label "SLC35C1^ENSG00000181830.9" ; ID "LARGE2--SLC35C1^ENST00000314134.4" ; Parent "LARGE2--SLC35C1^SLC35C1^ENSG00000181830.9" ; ccdsid "CCDS7914.1" ; exon_id "ENSE00001252340.8" ; exon_number 1 ; gene_id "LARGE2--SLC35C1^SLC35C1^ENSG00000181830.9" ; gene_name SLC35C1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000166519.3" ; havana_transcript "OTTHUMT00000390139.2" ; hgnc_id "HGNC:20197" ; level 2 ; orig_coord_info "chr11,45805802,45806336,+" ; protein_id "ENSP00000313318.3" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LARGE2--SLC35C1^ENST00000314134.4" ; transcript_name "SLC35C1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LARGE2--SLC35C1 ENSEMBL gene 2158 8327 . + . FI_gene_label "LARGE2^ENSG00000165905.18" ; ID "LARGE2--SLC35C1^LARGE2^ENSG00000165905.18" ; ccdsid "CCDS31473.1" ; exon_id "ENSE00001771999.1" ; exon_number 1 ; gene_id "LARGE2--SLC35C1^LARGE2^ENSG00000165905.18" ; gene_name LARGE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167037.2" ; hgnc_id "HGNC:16522" ; level 3 ; orig_coord_info "chr11,45922883,45923167,+" ; protein_id "ENSP00000324570.5" ; tag basic appris_principal_2 CCDS ; transcript_id "LARGE2--SLC35C1^ENST00000325468.9" ; transcript_name "LARGE2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LARGE2--SLC35C1 ENSEMBL mRNA 2158 8327 . + . FI_gene_label "LARGE2^ENSG00000165905.18" ; ID "LARGE2--SLC35C1^ENST00000325468.9" ; Parent "LARGE2--SLC35C1^LARGE2^ENSG00000165905.18" ; ccdsid "CCDS31473.1" ; exon_id "ENSE00001771999.1" ; exon_number 1 ; gene_id "LARGE2--SLC35C1^LARGE2^ENSG00000165905.18" ; gene_name LARGE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167037.2" ; hgnc_id "HGNC:16522" ; level 3 ; orig_coord_info "chr11,45922883,45923167,+" ; protein_id "ENSP00000324570.5" ; tag basic appris_principal_2 CCDS ; transcript_id "LARGE2--SLC35C1^ENST00000325468.9" ; transcript_name "LARGE2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC02614--CYP4F8 HAVANA gene 26958 37036 . + . FI_gene_label "CYP4F8^ENSG00000186526.13" ; ID "LINC02614--CYP4F8^CYP4F8^ENSG00000186526.13" ; exon_id "ENSE00003712741.1" ; exon_number 2 ; gene_id "LINC02614--CYP4F8^CYP4F8^ENSG00000186526.13" ; gene_name CYP4F8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182386.7" ; havana_transcript "OTTHUMT00000460899.2" ; hgnc_id "HGNC:2648" ; level 2 ; orig_coord_info "chr19,15615617,15615814,+" ; protein_id "ENSP00000479430.1" ; tag CAGE_supported_TSS ; transcript_id "LINC02614--CYP4F8^ENST00000325723.10" ; transcript_name "CYP4F8-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
LINC02614--CYP4F8 HAVANA mRNA 26958 37036 . + . FI_gene_label "CYP4F8^ENSG00000186526.13" ; ID "LINC02614--CYP4F8^ENST00000325723.10" ; Parent "LINC02614--CYP4F8^CYP4F8^ENSG00000186526.13" ; exon_id "ENSE00003712741.1" ; exon_number 2 ; gene_id "LINC02614--CYP4F8^CYP4F8^ENSG00000186526.13" ; gene_name CYP4F8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182386.7" ; havana_transcript "OTTHUMT00000460899.2" ; hgnc_id "HGNC:2648" ; level 2 ; orig_coord_info "chr19,15615617,15615814,+" ; protein_id "ENSP00000479430.1" ; tag CAGE_supported_TSS ; transcript_id "LINC02614--CYP4F8^ENST00000325723.10" ; transcript_name "CYP4F8-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
MOCOS--AC027229.1 HAVANA gene 1001 21229 . + . FI_gene_label "MOCOS^ENSG00000075643.6" ; ID "MOCOS--AC027229.1^MOCOS^ENSG00000075643.6" ; ccdsid "CCDS11919.1" ; exon_id "ENSE00000916114.8" ; exon_number 1 ; gene_id "MOCOS--AC027229.1^MOCOS^ENSG00000075643.6" ; gene_name MOCOS ; gene_type protein_coding ; havana_gene "OTTHUMG00000132590.3" ; havana_transcript "OTTHUMT00000255801.2" ; hgnc_id "HGNC:18234" ; level 2 ; orig_coord_info "chr18,36187540,36187681,+" ; protein_id "ENSP00000261326.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MOCOS--AC027229.1^ENST00000261326.6" ; transcript_name "MOCOS-201" ; transcript_support_level 1 ; transcript_type protein_coding
MOCOS--AC027229.1 HAVANA mRNA 1001 21229 . + . FI_gene_label "MOCOS^ENSG00000075643.6" ; ID "MOCOS--AC027229.1^ENST00000261326.6" ; Parent "MOCOS--AC027229.1^MOCOS^ENSG00000075643.6" ; ccdsid "CCDS11919.1" ; exon_id "ENSE00000916114.8" ; exon_number 1 ; gene_id "MOCOS--AC027229.1^MOCOS^ENSG00000075643.6" ; gene_name MOCOS ; gene_type protein_coding ; havana_gene "OTTHUMG00000132590.3" ; havana_transcript "OTTHUMT00000255801.2" ; hgnc_id "HGNC:18234" ; level 2 ; orig_coord_info "chr18,36187540,36187681,+" ; protein_id "ENSP00000261326.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MOCOS--AC027229.1^ENST00000261326.6" ; transcript_name "MOCOS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MOCOS--RN7SL97P HAVANA gene 1001 21229 . + . FI_gene_label "MOCOS^ENSG00000075643.6" ; ID "MOCOS--RN7SL97P^MOCOS^ENSG00000075643.6" ; ccdsid "CCDS11919.1" ; exon_id "ENSE00000916114.8" ; exon_number 1 ; gene_id "MOCOS--RN7SL97P^MOCOS^ENSG00000075643.6" ; gene_name MOCOS ; gene_type protein_coding ; havana_gene "OTTHUMG00000132590.3" ; havana_transcript "OTTHUMT00000255801.2" ; hgnc_id "HGNC:18234" ; level 2 ; orig_coord_info "chr18,36187540,36187681,+" ; protein_id "ENSP00000261326.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MOCOS--RN7SL97P^ENST00000261326.6" ; transcript_name "MOCOS-201" ; transcript_support_level 1 ; transcript_type protein_coding
MOCOS--RN7SL97P HAVANA mRNA 1001 21229 . + . FI_gene_label "MOCOS^ENSG00000075643.6" ; ID "MOCOS--RN7SL97P^ENST00000261326.6" ; Parent "MOCOS--RN7SL97P^MOCOS^ENSG00000075643.6" ; ccdsid "CCDS11919.1" ; exon_id "ENSE00000916114.8" ; exon_number 1 ; gene_id "MOCOS--RN7SL97P^MOCOS^ENSG00000075643.6" ; gene_name MOCOS ; gene_type protein_coding ; havana_gene "OTTHUMG00000132590.3" ; havana_transcript "OTTHUMT00000255801.2" ; hgnc_id "HGNC:18234" ; level 2 ; orig_coord_info "chr18,36187540,36187681,+" ; protein_id "ENSP00000261326.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MOCOS--RN7SL97P^ENST00000261326.6" ; transcript_name "MOCOS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NCOR1--NEAT1 HAVANA gene 2879 58828 . + . FI_gene_label "NCOR1^ENSG00000141027.21" ; ID "NCOR1--NEAT1^NCOR1^ENSG00000141027.21" ; ccdsid "CCDS11175.1" ; exon_id "ENSE00003656730.1" ; exon_number 2 ; gene_id "NCOR1--NEAT1^NCOR1^ENSG00000141027.21" ; gene_name NCOR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059309.12" ; havana_transcript "OTTHUMT00000131751.6" ; hgnc_id "HGNC:7672" ; level 2 ; orig_coord_info "chr17,16194462,16194569,-" ; protein_id "ENSP00000268712.2" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "NCOR1--NEAT1^ENST00000268712.8" ; transcript_name "NCOR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCOR1--NEAT1 HAVANA mRNA 2879 58828 . + . FI_gene_label "NCOR1^ENSG00000141027.21" ; ID "NCOR1--NEAT1^ENST00000268712.8" ; Parent "NCOR1--NEAT1^NCOR1^ENSG00000141027.21" ; ccdsid "CCDS11175.1" ; exon_id "ENSE00003656730.1" ; exon_number 2 ; gene_id "NCOR1--NEAT1^NCOR1^ENSG00000141027.21" ; gene_name NCOR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059309.12" ; havana_transcript "OTTHUMT00000131751.6" ; hgnc_id "HGNC:7672" ; level 2 ; orig_coord_info "chr17,16194462,16194569,-" ; protein_id "ENSP00000268712.2" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "NCOR1--NEAT1^ENST00000268712.8" ; transcript_name "NCOR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NEAT1--NCOR1 HAVANA gene 28646 84595 . + . FI_gene_label "NCOR1^ENSG00000141027.21" ; ID "NEAT1--NCOR1^NCOR1^ENSG00000141027.21" ; ccdsid "CCDS11175.1" ; exon_id "ENSE00003656730.1" ; exon_number 2 ; gene_id "NEAT1--NCOR1^NCOR1^ENSG00000141027.21" ; gene_name NCOR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059309.12" ; havana_transcript "OTTHUMT00000131751.6" ; hgnc_id "HGNC:7672" ; level 2 ; orig_coord_info "chr17,16194462,16194569,-" ; protein_id "ENSP00000268712.2" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "NEAT1--NCOR1^ENST00000268712.8" ; transcript_name "NCOR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NEAT1--NCOR1 HAVANA mRNA 28646 84595 . + . FI_gene_label "NCOR1^ENSG00000141027.21" ; ID "NEAT1--NCOR1^ENST00000268712.8" ; Parent "NEAT1--NCOR1^NCOR1^ENSG00000141027.21" ; ccdsid "CCDS11175.1" ; exon_id "ENSE00003656730.1" ; exon_number 2 ; gene_id "NEAT1--NCOR1^NCOR1^ENSG00000141027.21" ; gene_name NCOR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059309.12" ; havana_transcript "OTTHUMT00000131751.6" ; hgnc_id "HGNC:7672" ; level 2 ; orig_coord_info "chr17,16194462,16194569,-" ; protein_id "ENSP00000268712.2" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "NEAT1--NCOR1^ENST00000268712.8" ; transcript_name "NCOR1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOS1AP--ATF6 HAVANA gene 1001 18973 . + . FI_gene_label "NOS1AP^ENSG00000198929.13" ; ID "NOS1AP--ATF6^NOS1AP^ENSG00000198929.13" ; ccdsid "CCDS1237.1" ; exon_id "ENSE00001445962.4" ; exon_number 1 ; gene_id "NOS1AP--ATF6^NOS1AP^ENSG00000198929.13" ; gene_name NOS1AP ; gene_type protein_coding ; havana_gene "OTTHUMG00000024049.7" ; havana_transcript "OTTHUMT00000060555.3" ; hgnc_id "HGNC:16859" ; level 2 ; orig_coord_info "chr1,162070178,162070282,+" ; protein_id "ENSP00000355133.5" ; tag basic MANE_Select CCDS ; transcript_id "NOS1AP--ATF6^ENST00000361897.10" ; transcript_name "NOS1AP-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOS1AP--ATF6 HAVANA mRNA 1001 18973 . + . FI_gene_label "NOS1AP^ENSG00000198929.13" ; ID "NOS1AP--ATF6^ENST00000361897.10" ; Parent "NOS1AP--ATF6^NOS1AP^ENSG00000198929.13" ; ccdsid "CCDS1237.1" ; exon_id "ENSE00001445962.4" ; exon_number 1 ; gene_id "NOS1AP--ATF6^NOS1AP^ENSG00000198929.13" ; gene_name NOS1AP ; gene_type protein_coding ; havana_gene "OTTHUMG00000024049.7" ; havana_transcript "OTTHUMT00000060555.3" ; hgnc_id "HGNC:16859" ; level 2 ; orig_coord_info "chr1,162070178,162070282,+" ; protein_id "ENSP00000355133.5" ; tag basic MANE_Select CCDS ; transcript_id "NOS1AP--ATF6^ENST00000361897.10" ; transcript_name "NOS1AP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOS1AP--ATF6 HAVANA gene 21996 53406 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "NOS1AP--ATF6^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "NOS1AP--ATF6^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NOS1AP--ATF6^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
NOS1AP--ATF6 HAVANA mRNA 21996 53406 . + . FI_gene_label "ATF6^ENSG00000118217.7" ; ID "NOS1AP--ATF6^ENST00000367942.4" ; Parent "NOS1AP--ATF6^ATF6^ENSG00000118217.7" ; ccdsid "CCDS1235.1" ; exon_id "ENSE00001445975.2" ; exon_number 1 ; gene_id "NOS1AP--ATF6^ATF6^ENSG00000118217.7" ; gene_name ATF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000023961.3" ; havana_transcript "OTTHUMT00000060304.3" ; hgnc_id "HGNC:791" ; level 2 ; orig_coord_info "chr1,161766361,161766442,+" ; protein_id "ENSP00000356919.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NOS1AP--ATF6^ENST00000367942.4" ; transcript_name "ATF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPLOC4--AC104688.1 HAVANA gene 2037 31739 . + . FI_gene_label "NPLOC4^ENSG00000182446.14" ; ID "NPLOC4--AC104688.1^NPLOC4^ENSG00000182446.14" ; ccdsid "CCDS45812.1" ; exon_id "ENSE00002649665.2" ; exon_number 1 ; gene_id "NPLOC4--AC104688.1^NPLOC4^ENSG00000182446.14" ; gene_name NPLOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177990.5" ; havana_transcript "OTTHUMT00000440140.2" ; hgnc_id "HGNC:18261" ; level 2 ; orig_coord_info "chr17,81636916,81636930,-" ; protein_id "ENSP00000331487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPLOC4--AC104688.1^ENST00000331134.11" ; transcript_name "NPLOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPLOC4--AC104688.1 HAVANA mRNA 2037 31739 . + . FI_gene_label "NPLOC4^ENSG00000182446.14" ; ID "NPLOC4--AC104688.1^ENST00000331134.11" ; Parent "NPLOC4--AC104688.1^NPLOC4^ENSG00000182446.14" ; ccdsid "CCDS45812.1" ; exon_id "ENSE00002649665.2" ; exon_number 1 ; gene_id "NPLOC4--AC104688.1^NPLOC4^ENSG00000182446.14" ; gene_name NPLOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177990.5" ; havana_transcript "OTTHUMT00000440140.2" ; hgnc_id "HGNC:18261" ; level 2 ; orig_coord_info "chr17,81636916,81636930,-" ; protein_id "ENSP00000331487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPLOC4--AC104688.1^ENST00000331134.11" ; transcript_name "NPLOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPLOC4--RNA5SP231 HAVANA gene 2037 31739 . + . FI_gene_label "NPLOC4^ENSG00000182446.14" ; ID "NPLOC4--RNA5SP231^NPLOC4^ENSG00000182446.14" ; ccdsid "CCDS45812.1" ; exon_id "ENSE00002649665.2" ; exon_number 1 ; gene_id "NPLOC4--RNA5SP231^NPLOC4^ENSG00000182446.14" ; gene_name NPLOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177990.5" ; havana_transcript "OTTHUMT00000440140.2" ; hgnc_id "HGNC:18261" ; level 2 ; orig_coord_info "chr17,81636916,81636930,-" ; protein_id "ENSP00000331487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPLOC4--RNA5SP231^ENST00000331134.11" ; transcript_name "NPLOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPLOC4--RNA5SP231 HAVANA mRNA 2037 31739 . + . FI_gene_label "NPLOC4^ENSG00000182446.14" ; ID "NPLOC4--RNA5SP231^ENST00000331134.11" ; Parent "NPLOC4--RNA5SP231^NPLOC4^ENSG00000182446.14" ; ccdsid "CCDS45812.1" ; exon_id "ENSE00002649665.2" ; exon_number 1 ; gene_id "NPLOC4--RNA5SP231^NPLOC4^ENSG00000182446.14" ; gene_name NPLOC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177990.5" ; havana_transcript "OTTHUMT00000440140.2" ; hgnc_id "HGNC:18261" ; level 2 ; orig_coord_info "chr17,81636916,81636930,-" ; protein_id "ENSP00000331487.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPLOC4--RNA5SP231^ENST00000331134.11" ; transcript_name "NPLOC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PATJ--H4C15 HAVANA gene 33634 48200 . + . FI_gene_label "PATJ^ENSG00000132849.21" ; ID "PATJ--H4C15^PATJ^ENSG00000132849.21" ; exon_id "ENSE00001716531.2" ; exon_number 1 ; gene_id "PATJ--H4C15^PATJ^ENSG00000132849.21" ; gene_name PATJ ; gene_type protein_coding ; havana_gene "OTTHUMG00000008560.10" ; havana_transcript "OTTHUMT00000488269.2" ; hgnc_id "HGNC:28881" ; level 2 ; orig_coord_info "chr1,61952390,61952411,+" ; protein_id "ENSP00000307496.8" ; tag basic ; transcript_id "PATJ--H4C15^ENST00000307297.8" ; transcript_name "PATJ-201" ; transcript_support_level 2 ; transcript_type protein_coding
PATJ--H4C15 HAVANA mRNA 33634 48200 . + . FI_gene_label "PATJ^ENSG00000132849.21" ; ID "PATJ--H4C15^ENST00000307297.8" ; Parent "PATJ--H4C15^PATJ^ENSG00000132849.21" ; exon_id "ENSE00001716531.2" ; exon_number 1 ; gene_id "PATJ--H4C15^PATJ^ENSG00000132849.21" ; gene_name PATJ ; gene_type protein_coding ; havana_gene "OTTHUMG00000008560.10" ; havana_transcript "OTTHUMT00000488269.2" ; hgnc_id "HGNC:28881" ; level 2 ; orig_coord_info "chr1,61952390,61952411,+" ; protein_id "ENSP00000307496.8" ; tag basic ; transcript_id "PATJ--H4C15^ENST00000307297.8" ; transcript_name "PATJ-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PATJ--H4C15 HAVANA gene 63164 64295 . + . FI_gene_label "H4C15^ENSG00000270276.2" ; ID "PATJ--H4C15^H4C15^ENSG00000270276.2" ; ccdsid "CCDS30851.1" ; exon_id "ENSE00003726407.1" ; exon_number 1 ; gene_id "PATJ--H4C15^H4C15^ENSG00000270276.2" ; gene_name H4C15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188201.2" ; havana_transcript "OTTHUMT00000477868.2" ; hgnc_id "HGNC:29607" ; level 2 ; orig_coord_info "chr1,149860823,149861131,-" ; protein_id "ENSP00000462355.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PATJ--H4C15^ENST00000579512.2" ; transcript_name "H4C15-201" ; transcript_support_level NA ; transcript_type protein_coding
PATJ--H4C15 HAVANA mRNA 63164 64295 . + . FI_gene_label "H4C15^ENSG00000270276.2" ; ID "PATJ--H4C15^ENST00000579512.2" ; Parent "PATJ--H4C15^H4C15^ENSG00000270276.2" ; ccdsid "CCDS30851.1" ; exon_id "ENSE00003726407.1" ; exon_number 1 ; gene_id "PATJ--H4C15^H4C15^ENSG00000270276.2" ; gene_name H4C15 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188201.2" ; havana_transcript "OTTHUMT00000477868.2" ; hgnc_id "HGNC:29607" ; level 2 ; orig_coord_info "chr1,149860823,149861131,-" ; protein_id "ENSP00000462355.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PATJ--H4C15^ENST00000579512.2" ; transcript_name "H4C15-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCAT18--CHST9 HAVANA gene 7609 14812 . + . FI_gene_label "CHST9^ENSG00000154080.14" ; ID "PCAT18--CHST9^CHST9^ENSG00000154080.14" ; ccdsid "CCDS58618.1" ; exon_id "ENSE00002245432.1" ; exon_number 2 ; gene_id "PCAT18--CHST9^CHST9^ENSG00000154080.14" ; gene_name CHST9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179469.5" ; havana_transcript "OTTHUMT00000446911.1" ; hgnc_id "HGNC:19898" ; level 2 ; orig_coord_info "chr18,27142689,27142809,-" ; protein_id "ENSP00000464655.1" ; tag basic CCDS ; transcript_id "PCAT18--CHST9^ENST00000580774.2" ; transcript_name "CHST9-201" ; transcript_support_level 3 ; transcript_type protein_coding
PCAT18--CHST9 HAVANA mRNA 7609 14812 . + . FI_gene_label "CHST9^ENSG00000154080.14" ; ID "PCAT18--CHST9^ENST00000580774.2" ; Parent "PCAT18--CHST9^CHST9^ENSG00000154080.14" ; ccdsid "CCDS58618.1" ; exon_id "ENSE00002245432.1" ; exon_number 2 ; gene_id "PCAT18--CHST9^CHST9^ENSG00000154080.14" ; gene_name CHST9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179469.5" ; havana_transcript "OTTHUMT00000446911.1" ; hgnc_id "HGNC:19898" ; level 2 ; orig_coord_info "chr18,27142689,27142809,-" ; protein_id "ENSP00000464655.1" ; tag basic CCDS ; transcript_id "PCAT18--CHST9^ENST00000580774.2" ; transcript_name "CHST9-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA10 HAVANA gene 8733 18186 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA10 HAVANA mRNA 8733 18186 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA10 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA10^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA10 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA10^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA10^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA11 HAVANA gene 8548 17353 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA11 HAVANA mRNA 8548 17353 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA11 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA11^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA11 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA11^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA11^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA12 HAVANA gene 8544 16436 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA12 HAVANA mRNA 8544 16436 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA12 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA12^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA12 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA12^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA12^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA8 HAVANA gene 11020 20200 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA8 HAVANA mRNA 11020 20200 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA8 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA8^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA8 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA8^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA8^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA9 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA9^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA9 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA9^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA9^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA9 HAVANA gene 8565 16292 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA9 HAVANA mRNA 8565 16292 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB6 HAVANA gene 8726 18325 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGB6 HAVANA mRNA 8726 18325 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB6 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB6^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGB6 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB6^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB6^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB7 HAVANA gene 8576 16505 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGB7 HAVANA mRNA 8576 16505 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB7 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB7^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGB7 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB7^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB7^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC3 HAVANA gene 8563 18749 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC3 HAVANA mRNA 8563 18749 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC3 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC3^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC3 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC3^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC3^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC4 HAVANA gene 8721 16517 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC4 HAVANA mRNA 8721 16517 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC4 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC4^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC4 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC4^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC4^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC5 HAVANA gene 8544 16569 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC5 HAVANA mRNA 8544 16569 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC5 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC5^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC5 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC5^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC5^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PDCD4--RBM20 HAVANA gene 1134 17031 . + . FI_gene_label "PDCD4^ENSG00000150593.18" ; ID "PDCD4--RBM20^PDCD4^ENSG00000150593.18" ; ccdsid "CCDS7567.1" ; exon_id "ENSE00003566915.1" ; exon_number 2 ; gene_id "PDCD4--RBM20^PDCD4^ENSG00000150593.18" ; gene_name PDCD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019048.3" ; havana_transcript "OTTHUMT00000050361.2" ; hgnc_id "HGNC:8763" ; level 2 ; orig_coord_info "chr10,110876028,110876070,+" ; protein_id "ENSP00000280154.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PDCD4--RBM20^ENST00000280154.12" ; transcript_name "PDCD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDCD4--RBM20 HAVANA mRNA 1134 17031 . + . FI_gene_label "PDCD4^ENSG00000150593.18" ; ID "PDCD4--RBM20^ENST00000280154.12" ; Parent "PDCD4--RBM20^PDCD4^ENSG00000150593.18" ; ccdsid "CCDS7567.1" ; exon_id "ENSE00003566915.1" ; exon_number 2 ; gene_id "PDCD4--RBM20^PDCD4^ENSG00000150593.18" ; gene_name PDCD4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019048.3" ; havana_transcript "OTTHUMT00000050361.2" ; hgnc_id "HGNC:8763" ; level 2 ; orig_coord_info "chr10,110876028,110876070,+" ; protein_id "ENSP00000280154.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PDCD4--RBM20^ENST00000280154.12" ; transcript_name "PDCD4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PDCD4--RBM20 HAVANA gene 20032 41701 . + . FI_gene_label "RBM20^ENSG00000203867.8" ; ID "PDCD4--RBM20^RBM20^ENSG00000203867.8" ; ccdsid "CCDS44477.1" ; exon_id "ENSE00001450234.3" ; exon_number 1 ; gene_id "PDCD4--RBM20^RBM20^ENSG00000203867.8" ; gene_name RBM20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019043.6" ; havana_transcript "OTTHUMT00000050339.4" ; hgnc_id "HGNC:27424" ; level 2 ; orig_coord_info "chr10,110644455,110644645,+" ; protein_id "ENSP00000358532.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PDCD4--RBM20^ENST00000369519.4" ; transcript_name "RBM20-201" ; transcript_support_level 1 ; transcript_type protein_coding
PDCD4--RBM20 HAVANA mRNA 20032 41701 . + . FI_gene_label "RBM20^ENSG00000203867.8" ; ID "PDCD4--RBM20^ENST00000369519.4" ; Parent "PDCD4--RBM20^RBM20^ENSG00000203867.8" ; ccdsid "CCDS44477.1" ; exon_id "ENSE00001450234.3" ; exon_number 1 ; gene_id "PDCD4--RBM20^RBM20^ENSG00000203867.8" ; gene_name RBM20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019043.6" ; havana_transcript "OTTHUMT00000050339.4" ; hgnc_id "HGNC:27424" ; level 2 ; orig_coord_info "chr10,110644455,110644645,+" ; protein_id "ENSP00000358532.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PDCD4--RBM20^ENST00000369519.4" ; transcript_name "RBM20-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTEN--CWF19L1 HAVANA gene 23703 39972 . + . FI_gene_label "CWF19L1^ENSG00000095485.18" ; ID "PTEN--CWF19L1^CWF19L1^ENSG00000095485.18" ; ccdsid "CCDS7489.1" ; exon_id "ENSE00003632204.3" ; exon_number 1 ; gene_id "PTEN--CWF19L1^CWF19L1^ENSG00000095485.18" ; gene_name CWF19L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018901.7" ; havana_transcript "OTTHUMT00000049846.6" ; hgnc_id "HGNC:25613" ; level 2 ; orig_coord_info "chr10,100267571,100267593,-" ; protein_id "ENSP00000326411.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTEN--CWF19L1^ENST00000354105.10" ; transcript_name "CWF19L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTEN--CWF19L1 HAVANA mRNA 23703 39972 . + . FI_gene_label "CWF19L1^ENSG00000095485.18" ; ID "PTEN--CWF19L1^ENST00000354105.10" ; Parent "PTEN--CWF19L1^CWF19L1^ENSG00000095485.18" ; ccdsid "CCDS7489.1" ; exon_id "ENSE00003632204.3" ; exon_number 1 ; gene_id "PTEN--CWF19L1^CWF19L1^ENSG00000095485.18" ; gene_name CWF19L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018901.7" ; havana_transcript "OTTHUMT00000049846.6" ; hgnc_id "HGNC:25613" ; level 2 ; orig_coord_info "chr10,100267571,100267593,-" ; protein_id "ENSP00000326411.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTEN--CWF19L1^ENST00000354105.10" ; transcript_name "CWF19L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTEN--CWF19L1 HAVANA gene 1001 20660 . + . FI_gene_label "PTEN^ENSG00000171862.11" ; ID "PTEN--CWF19L1^PTEN^ENSG00000171862.11" ; ccdsid "CCDS31238.1" ; exon_id "ENSE00001456562.4" ; exon_number 1 ; gene_id "PTEN--CWF19L1^PTEN^ENSG00000171862.11" ; gene_name PTEN ; gene_type protein_coding ; havana_gene "OTTHUMG00000018688.3" ; havana_transcript "OTTHUMT00000049241.2" ; hgnc_id "HGNC:9588" ; level 2 ; orig_coord_info "chr10,87864470,87864548,+" ; protein_id "ENSP00000361021.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTEN--CWF19L1^ENST00000371953.8" ; transcript_name "PTEN-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTEN--CWF19L1 HAVANA mRNA 1001 20660 . + . FI_gene_label "PTEN^ENSG00000171862.11" ; ID "PTEN--CWF19L1^ENST00000371953.8" ; Parent "PTEN--CWF19L1^PTEN^ENSG00000171862.11" ; ccdsid "CCDS31238.1" ; exon_id "ENSE00001456562.4" ; exon_number 1 ; gene_id "PTEN--CWF19L1^PTEN^ENSG00000171862.11" ; gene_name PTEN ; gene_type protein_coding ; havana_gene "OTTHUMG00000018688.3" ; havana_transcript "OTTHUMT00000049241.2" ; hgnc_id "HGNC:9588" ; level 2 ; orig_coord_info "chr10,87864470,87864548,+" ; protein_id "ENSP00000361021.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PTEN--CWF19L1^ENST00000371953.8" ; transcript_name "PTEN-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ROCK1--AC007948.1 HAVANA gene 1001 38771 . + . FI_gene_label "ROCK1^ENSG00000067900.8" ; ID "ROCK1--AC007948.1^ROCK1^ENSG00000067900.8" ; ccdsid "CCDS11870.2" ; exon_id "ENSE00001540250.2" ; exon_number 1 ; gene_id "ROCK1--AC007948.1^ROCK1^ENSG00000067900.8" ; gene_name ROCK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131723.5" ; havana_transcript "OTTHUMT00000254641.3" ; hgnc_id "HGNC:10251" ; level 2 ; orig_coord_info "chr18,21110818,21110910,-" ; protein_id "ENSP00000382697.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROCK1--AC007948.1^ENST00000399799.3" ; transcript_name "ROCK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ROCK1--AC007948.1 HAVANA mRNA 1001 38771 . + . FI_gene_label "ROCK1^ENSG00000067900.8" ; ID "ROCK1--AC007948.1^ENST00000399799.3" ; Parent "ROCK1--AC007948.1^ROCK1^ENSG00000067900.8" ; ccdsid "CCDS11870.2" ; exon_id "ENSE00001540250.2" ; exon_number 1 ; gene_id "ROCK1--AC007948.1^ROCK1^ENSG00000067900.8" ; gene_name ROCK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131723.5" ; havana_transcript "OTTHUMT00000254641.3" ; hgnc_id "HGNC:10251" ; level 2 ; orig_coord_info "chr18,21110818,21110910,-" ; protein_id "ENSP00000382697.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROCK1--AC007948.1^ENST00000399799.3" ; transcript_name "ROCK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ROCK1--AC090348.1 HAVANA gene 1001 38771 . + . FI_gene_label "ROCK1^ENSG00000067900.8" ; ID "ROCK1--AC090348.1^ROCK1^ENSG00000067900.8" ; ccdsid "CCDS11870.2" ; exon_id "ENSE00001540250.2" ; exon_number 1 ; gene_id "ROCK1--AC090348.1^ROCK1^ENSG00000067900.8" ; gene_name ROCK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131723.5" ; havana_transcript "OTTHUMT00000254641.3" ; hgnc_id "HGNC:10251" ; level 2 ; orig_coord_info "chr18,21110818,21110910,-" ; protein_id "ENSP00000382697.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROCK1--AC090348.1^ENST00000399799.3" ; transcript_name "ROCK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ROCK1--AC090348.1 HAVANA mRNA 1001 38771 . + . FI_gene_label "ROCK1^ENSG00000067900.8" ; ID "ROCK1--AC090348.1^ENST00000399799.3" ; Parent "ROCK1--AC090348.1^ROCK1^ENSG00000067900.8" ; ccdsid "CCDS11870.2" ; exon_id "ENSE00001540250.2" ; exon_number 1 ; gene_id "ROCK1--AC090348.1^ROCK1^ENSG00000067900.8" ; gene_name ROCK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131723.5" ; havana_transcript "OTTHUMT00000254641.3" ; hgnc_id "HGNC:10251" ; level 2 ; orig_coord_info "chr18,21110818,21110910,-" ; protein_id "ENSP00000382697.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ROCK1--AC090348.1^ENST00000399799.3" ; transcript_name "ROCK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TCF7L2--LINC01435 HAVANA gene 15542 23732 . + . FI_gene_label "TCF7L2^ENSG00000148737.17" ; ID "TCF7L2--LINC01435^TCF7L2^ENSG00000148737.17" ; exon_id "ENSE00001738678.1" ; exon_number 1 ; gene_id "TCF7L2--LINC01435^TCF7L2^ENSG00000148737.17" ; gene_name TCF7L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019070.11" ; havana_transcript "OTTHUMT00000050420.2" ; hgnc_id "HGNC:11641" ; level 2 ; orig_coord_info "chr10,113146072,113146097,+" ; protein_id "ENSP00000277945.7" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "TCF7L2--LINC01435^ENST00000277945.11" ; transcript_name "TCF7L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
TCF7L2--LINC01435 HAVANA mRNA 15542 23732 . + . FI_gene_label "TCF7L2^ENSG00000148737.17" ; ID "TCF7L2--LINC01435^ENST00000277945.11" ; Parent "TCF7L2--LINC01435^TCF7L2^ENSG00000148737.17" ; exon_id "ENSE00001738678.1" ; exon_number 1 ; gene_id "TCF7L2--LINC01435^TCF7L2^ENSG00000148737.17" ; gene_name TCF7L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019070.11" ; havana_transcript "OTTHUMT00000050420.2" ; hgnc_id "HGNC:11641" ; level 2 ; orig_coord_info "chr10,113146072,113146097,+" ; protein_id "ENSP00000277945.7" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "TCF7L2--LINC01435^ENST00000277945.11" ; transcript_name "TCF7L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TCF7L2--RNA5SP326 HAVANA gene 15542 23732 . + . FI_gene_label "TCF7L2^ENSG00000148737.17" ; ID "TCF7L2--RNA5SP326^TCF7L2^ENSG00000148737.17" ; exon_id "ENSE00001738678.1" ; exon_number 1 ; gene_id "TCF7L2--RNA5SP326^TCF7L2^ENSG00000148737.17" ; gene_name TCF7L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019070.11" ; havana_transcript "OTTHUMT00000050420.2" ; hgnc_id "HGNC:11641" ; level 2 ; orig_coord_info "chr10,113146072,113146097,+" ; protein_id "ENSP00000277945.7" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "TCF7L2--RNA5SP326^ENST00000277945.11" ; transcript_name "TCF7L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
TCF7L2--RNA5SP326 HAVANA mRNA 15542 23732 . + . FI_gene_label "TCF7L2^ENSG00000148737.17" ; ID "TCF7L2--RNA5SP326^ENST00000277945.11" ; Parent "TCF7L2--RNA5SP326^TCF7L2^ENSG00000148737.17" ; exon_id "ENSE00001738678.1" ; exon_number 1 ; gene_id "TCF7L2--RNA5SP326^TCF7L2^ENSG00000148737.17" ; gene_name TCF7L2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019070.11" ; havana_transcript "OTTHUMT00000050420.2" ; hgnc_id "HGNC:11641" ; level 2 ; orig_coord_info "chr10,113146072,113146097,+" ; protein_id "ENSP00000277945.7" ; tag mRNA_start_NF mRNA_end_NF cds_start_NF cds_end_NF ; transcript_id "TCF7L2--RNA5SP326^ENST00000277945.11" ; transcript_name "TCF7L2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AC183088.3--OR4N4C HAVANA gene 1001 4765 . + . FI_gene_label "AC183088.3^ENSG00000287345.1" ; ID "AC183088.3--OR4N4C^AC183088.3^ENSG00000287345.1" ; exon_id "ENSE00003867000.1" ; exon_number 1 ; gene_id "AC183088.3--OR4N4C^AC183088.3^ENSG00000287345.1" ; gene_name "AC183088.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193967.1" ; havana_transcript "OTTHUMT00000507870.1" ; level 2 ; orig_coord_info "chr15,21514144,21514472,+" ; tag basic TAGENE ; transcript_id "AC183088.3--OR4N4C^ENST00000667004.1" ; transcript_name "AC183088.3-201" ; transcript_type lncRNA
AC183088.3--OR4N4C HAVANA RNA 1001 4765 . + . FI_gene_label "AC183088.3^ENSG00000287345.1" ; ID "AC183088.3--OR4N4C^ENST00000667004.1" ; Parent "AC183088.3--OR4N4C^AC183088.3^ENSG00000287345.1" ; exon_id "ENSE00003867000.1" ; exon_number 1 ; gene_id "AC183088.3--OR4N4C^AC183088.3^ENSG00000287345.1" ; gene_name "AC183088.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193967.1" ; havana_transcript "OTTHUMT00000507870.1" ; level 2 ; orig_coord_info "chr15,21514144,21514472,+" ; tag basic TAGENE ; transcript_id "AC183088.3--OR4N4C^ENST00000667004.1" ; transcript_name "AC183088.3-201" ; transcript_type lncRNA
L1 and L2 created:
CBX3--AC005165.3 HAVANA gene 13349 15708 . + . FI_gene_label "AC005165.3^ENSG00000287096.1" ; ID "CBX3--AC005165.3^AC005165.3^ENSG00000287096.1" ; exon_id "ENSE00003866918.1" ; exon_number 1 ; gene_id "CBX3--AC005165.3^AC005165.3^ENSG00000287096.1" ; gene_name "AC005165.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194137.1" ; havana_transcript "OTTHUMT00000511530.1" ; level 2 ; orig_coord_info "chr7,25750890,25751058,+" ; tag basic TAGENE ; transcript_id "CBX3--AC005165.3^ENST00000659273.1" ; transcript_name "AC005165.3-201" ; transcript_type lncRNA
CBX3--AC005165.3 HAVANA RNA 13349 15708 . + . FI_gene_label "AC005165.3^ENSG00000287096.1" ; ID "CBX3--AC005165.3^ENST00000659273.1" ; Parent "CBX3--AC005165.3^AC005165.3^ENSG00000287096.1" ; exon_id "ENSE00003866918.1" ; exon_number 1 ; gene_id "CBX3--AC005165.3^AC005165.3^ENSG00000287096.1" ; gene_name "AC005165.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194137.1" ; havana_transcript "OTTHUMT00000511530.1" ; level 2 ; orig_coord_info "chr7,25750890,25751058,+" ; tag basic TAGENE ; transcript_id "CBX3--AC005165.3^ENST00000659273.1" ; transcript_name "AC005165.3-201" ; transcript_type lncRNA
L1 and L2 created:
CBX3--AC018706.1 HAVANA gene 13349 13923 . + . FI_gene_label "AC018706.1^ENSG00000286725.1" ; ID "CBX3--AC018706.1^AC018706.1^ENSG00000286725.1" ; exon_id "ENSE00003873562.1" ; exon_number 1 ; gene_id "CBX3--AC018706.1^AC018706.1^ENSG00000286725.1" ; gene_name "AC018706.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194125.1" ; havana_transcript "OTTHUMT00000511472.1" ; level 2 ; orig_coord_info "chr7,25831766,25831909,-" ; tag basic TAGENE ; transcript_id "CBX3--AC018706.1^ENST00000666265.1" ; transcript_name "AC018706.1-201" ; transcript_type lncRNA
CBX3--AC018706.1 HAVANA RNA 13349 13923 . + . FI_gene_label "AC018706.1^ENSG00000286725.1" ; ID "CBX3--AC018706.1^ENST00000666265.1" ; Parent "CBX3--AC018706.1^AC018706.1^ENSG00000286725.1" ; exon_id "ENSE00003873562.1" ; exon_number 1 ; gene_id "CBX3--AC018706.1^AC018706.1^ENSG00000286725.1" ; gene_name "AC018706.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194125.1" ; havana_transcript "OTTHUMT00000511472.1" ; level 2 ; orig_coord_info "chr7,25831766,25831909,-" ; tag basic TAGENE ; transcript_id "CBX3--AC018706.1^ENST00000666265.1" ; transcript_name "AC018706.1-201" ; transcript_type lncRNA
L1 and L2 created:
FOXP4--AL136967.2 HAVANA gene 22594 23336 . + . FI_gene_label "AL136967.2^ENSG00000280371.1" ; ID "FOXP4--AL136967.2^AL136967.2^ENSG00000280371.1" ; exon_id "ENSE00003758308.1" ; exon_number 1 ; gene_id "FOXP4--AL136967.2^AL136967.2^ENSG00000280371.1" ; gene_name "AL136967.2" ; gene_type TEC ; havana_gene "OTTHUMG00000046224.1" ; havana_transcript "OTTHUMT00000106562.1" ; level 2 ; orig_coord_info "chr6,41405819,41406561,+" ; tag basic ; transcript_id "FOXP4--AL136967.2^ENST00000623968.1" ; transcript_name "AL136967.2-201" ; transcript_support_level NA ; transcript_type TEC
FOXP4--AL136967.2 HAVANA RNA 22594 23336 . + . FI_gene_label "AL136967.2^ENSG00000280371.1" ; ID "FOXP4--AL136967.2^ENST00000623968.1" ; Parent "FOXP4--AL136967.2^AL136967.2^ENSG00000280371.1" ; exon_id "ENSE00003758308.1" ; exon_number 1 ; gene_id "FOXP4--AL136967.2^AL136967.2^ENSG00000280371.1" ; gene_name "AL136967.2" ; gene_type TEC ; havana_gene "OTTHUMG00000046224.1" ; havana_transcript "OTTHUMT00000106562.1" ; level 2 ; orig_coord_info "chr6,41405819,41406561,+" ; tag basic ; transcript_id "FOXP4--AL136967.2^ENST00000623968.1" ; transcript_name "AL136967.2-201" ; transcript_support_level NA ; transcript_type TEC
L1 and L2 created:
FOXP4--FOXP4-AS1 HAVANA gene 24822 26329 . + . FI_gene_label "FOXP4-AS1^ENSG00000234753.5" ; ID "FOXP4--FOXP4-AS1^FOXP4-AS1^ENSG00000234753.5" ; exon_id "ENSE00001601536.1" ; exon_number 1 ; gene_id "FOXP4--FOXP4-AS1^FOXP4-AS1^ENSG00000234753.5" ; gene_name "FOXP4-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000014680.3" ; havana_transcript "OTTHUMT00000040517.1" ; hgnc_id "HGNC:50332" ; level 2 ; orig_coord_info "chr6,41546089,41546176,-" ; transcript_id "FOXP4--FOXP4-AS1^ENST00000414386.5" ; transcript_name "FOXP4-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
FOXP4--FOXP4-AS1 HAVANA RNA 24822 26329 . + . FI_gene_label "FOXP4-AS1^ENSG00000234753.5" ; ID "FOXP4--FOXP4-AS1^ENST00000414386.5" ; Parent "FOXP4--FOXP4-AS1^FOXP4-AS1^ENSG00000234753.5" ; exon_id "ENSE00001601536.1" ; exon_number 1 ; gene_id "FOXP4--FOXP4-AS1^FOXP4-AS1^ENSG00000234753.5" ; gene_name "FOXP4-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000014680.3" ; havana_transcript "OTTHUMT00000040517.1" ; hgnc_id "HGNC:50332" ; level 2 ; orig_coord_info "chr6,41546089,41546176,-" ; transcript_id "FOXP4--FOXP4-AS1^ENST00000414386.5" ; transcript_name "FOXP4-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
FSIP1--AC013652.1 HAVANA gene 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
FSIP1--AC013652.1 HAVANA RNA 21835 37275 . + . FI_gene_label "AC013652.1^ENSG00000259345.7" ; ID "FSIP1--AC013652.1^ENST00000558209.1" ; Parent "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; exon_id "ENSE00002558629.1" ; exon_number 1 ; gene_id "FSIP1--AC013652.1^AC013652.1^ENSG00000259345.7" ; gene_name "AC013652.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000172466.4" ; havana_transcript "OTTHUMT00000418683.1" ; level 2 ; orig_coord_info "chr15,39427098,39427195,-" ; tag basic ; transcript_id "FSIP1--AC013652.1^ENST00000558209.1" ; transcript_name "AC013652.1-205" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
IMPDH1--AC090114.3 HAVANA gene 15839 24523 . + . FI_gene_label "AC090114.3^ENSG00000280828.1" ; ID "IMPDH1--AC090114.3^AC090114.3^ENSG00000280828.1" ; exon_id "ENSE00001826662.1" ; exon_number 1 ; gene_id "IMPDH1--AC090114.3^AC090114.3^ENSG00000280828.1" ; gene_name "AC090114.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000158229.2" ; havana_transcript "OTTHUMT00000350446.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,128533652,128533730,+" ; tag basic ; transcript_id "IMPDH1--AC090114.3^ENST00000479267.2" ; transcript_name "AC090114.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
IMPDH1--AC090114.3 HAVANA RNA 15839 24523 . + . FI_gene_label "AC090114.3^ENSG00000280828.1" ; ID "IMPDH1--AC090114.3^ENST00000479267.2" ; Parent "IMPDH1--AC090114.3^AC090114.3^ENSG00000280828.1" ; exon_id "ENSE00001826662.1" ; exon_number 1 ; gene_id "IMPDH1--AC090114.3^AC090114.3^ENSG00000280828.1" ; gene_name "AC090114.3" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000158229.2" ; havana_transcript "OTTHUMT00000350446.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,128533652,128533730,+" ; tag basic ; transcript_id "IMPDH1--AC090114.3^ENST00000479267.2" ; transcript_name "AC090114.3-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
LARGE2--LINC02716 HAVANA gene 11328 12254 . + . FI_gene_label "LINC02716^ENSG00000205106.4" ; ID "LARGE2--LINC02716^LINC02716^ENSG00000205106.4" ; exon_id "ENSE00001478708.1" ; exon_number 1 ; gene_id "LARGE2--LINC02716^LINC02716^ENSG00000205106.4" ; gene_name LINC02716 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166518.1" ; havana_transcript "OTTHUMT00000390137.1" ; hgnc_id "HGNC:25454" ; level 1 ; orig_coord_info "chr11,45771432,45771714,+" ; tag basic exp_conf ; transcript_id "LARGE2--LINC02716^ENST00000378779.4" ; transcript_name "LINC02716-201" ; transcript_support_level 1 ; transcript_type lncRNA
LARGE2--LINC02716 HAVANA RNA 11328 12254 . + . FI_gene_label "LINC02716^ENSG00000205106.4" ; ID "LARGE2--LINC02716^ENST00000378779.4" ; Parent "LARGE2--LINC02716^LINC02716^ENSG00000205106.4" ; exon_id "ENSE00001478708.1" ; exon_number 1 ; gene_id "LARGE2--LINC02716^LINC02716^ENSG00000205106.4" ; gene_name LINC02716 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166518.1" ; havana_transcript "OTTHUMT00000390137.1" ; hgnc_id "HGNC:25454" ; level 1 ; orig_coord_info "chr11,45771432,45771714,+" ; tag basic exp_conf ; transcript_id "LARGE2--LINC02716^ENST00000378779.4" ; transcript_name "LINC02716-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
LINC02614--CYP4F8 HAVANA gene 9688 18292 . + . FI_gene_label "LINC02614^ENSG00000241288.8" ; ID "LINC02614--CYP4F8^LINC02614^ENSG00000241288.8" ; exon_id "ENSE00001925582.1" ; exon_number 1 ; gene_id "LINC02614--CYP4F8^LINC02614^ENSG00000241288.8" ; gene_name LINC02614 ; gene_type lncRNA ; havana_gene "OTTHUMG00000159585.7" ; havana_transcript "OTTHUMT00000356335.2" ; hgnc_id "HGNC:54072" ; level 2 ; orig_coord_info "chr3,125885880,125887335,-" ; tag basic ; transcript_id "LINC02614--CYP4F8^ENST00000468859.1" ; transcript_name "LINC02614-201" ; transcript_support_level 2 ; transcript_type lncRNA
LINC02614--CYP4F8 HAVANA RNA 9688 18292 . + . FI_gene_label "LINC02614^ENSG00000241288.8" ; ID "LINC02614--CYP4F8^ENST00000468859.1" ; Parent "LINC02614--CYP4F8^LINC02614^ENSG00000241288.8" ; exon_id "ENSE00001925582.1" ; exon_number 1 ; gene_id "LINC02614--CYP4F8^LINC02614^ENSG00000241288.8" ; gene_name LINC02614 ; gene_type lncRNA ; havana_gene "OTTHUMG00000159585.7" ; havana_transcript "OTTHUMT00000356335.2" ; hgnc_id "HGNC:54072" ; level 2 ; orig_coord_info "chr3,125885880,125887335,-" ; tag basic ; transcript_id "LINC02614--CYP4F8^ENST00000468859.1" ; transcript_name "LINC02614-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
MOCOS--AC027229.1 HAVANA gene 24230 24482 . + . FI_gene_label "AC027229.1^ENSG00000264193.1" ; ID "MOCOS--AC027229.1^AC027229.1^ENSG00000264193.1" ; exon_id "ENSE00002696348.1" ; exon_number 1 ; gene_id "MOCOS--AC027229.1^AC027229.1^ENSG00000264193.1" ; gene_name "AC027229.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000179446.1" ; havana_transcript "OTTHUMT00000446401.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr18,25953216,25953468,-" ; tag basic ; transcript_id "MOCOS--AC027229.1^ENST00000583887.1" ; transcript_name "AC027229.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
MOCOS--AC027229.1 HAVANA RNA 24230 24482 . + . FI_gene_label "AC027229.1^ENSG00000264193.1" ; ID "MOCOS--AC027229.1^ENST00000583887.1" ; Parent "MOCOS--AC027229.1^AC027229.1^ENSG00000264193.1" ; exon_id "ENSE00002696348.1" ; exon_number 1 ; gene_id "MOCOS--AC027229.1^AC027229.1^ENSG00000264193.1" ; gene_name "AC027229.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000179446.1" ; havana_transcript "OTTHUMT00000446401.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr18,25953216,25953468,-" ; tag basic ; transcript_id "MOCOS--AC027229.1^ENST00000583887.1" ; transcript_name "AC027229.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
MOCOS--RN7SL97P ENSEMBL gene 24230 24528 . + . FI_gene_label "RN7SL97P^ENSG00000242216.3" ; ID "MOCOS--RN7SL97P^RN7SL97P^ENSG00000242216.3" ; exon_id "ENSE00001867556.3" ; exon_number 1 ; gene_id "MOCOS--RN7SL97P^RN7SL97P^ENSG00000242216.3" ; gene_name RN7SL97P ; gene_type misc_RNA ; hgnc_id "HGNC:46113" ; level 3 ; orig_coord_info "chr18,25818234,25818532,-" ; tag basic ; transcript_id "MOCOS--RN7SL97P^ENST00000486780.3" ; transcript_name "RN7SL97P-201" ; transcript_support_level NA ; transcript_type misc_RNA
MOCOS--RN7SL97P ENSEMBL RNA 24230 24528 . + . FI_gene_label "RN7SL97P^ENSG00000242216.3" ; ID "MOCOS--RN7SL97P^ENST00000486780.3" ; Parent "MOCOS--RN7SL97P^RN7SL97P^ENSG00000242216.3" ; exon_id "ENSE00001867556.3" ; exon_number 1 ; gene_id "MOCOS--RN7SL97P^RN7SL97P^ENSG00000242216.3" ; gene_name RN7SL97P ; gene_type misc_RNA ; hgnc_id "HGNC:46113" ; level 3 ; orig_coord_info "chr18,25818234,25818532,-" ; tag basic ; transcript_id "MOCOS--RN7SL97P^ENST00000486780.3" ; transcript_name "RN7SL97P-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
NCOR1--NEAT1 HAVANA gene 61829 65512 . + . FI_gene_label "NEAT1^ENSG00000245532.9" ; ID "NCOR1--NEAT1^NEAT1^ENSG00000245532.9" ; exon_id "ENSE00001965399.1" ; exon_number 1 ; gene_id "NCOR1--NEAT1^NEAT1^ENSG00000245532.9" ; gene_name NEAT1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166321.8" ; havana_transcript "OTTHUMT00000389141.3" ; hgnc_id "HGNC:30815" ; level 1 ; orig_coord_info "chr11,65422774,65423383,+" ; tag basic exp_conf ; transcript_id "NCOR1--NEAT1^ENST00000499732.3" ; transcript_name "NEAT1-201" ; transcript_support_level 2 ; transcript_type lncRNA
NCOR1--NEAT1 HAVANA RNA 61829 65512 . + . FI_gene_label "NEAT1^ENSG00000245532.9" ; ID "NCOR1--NEAT1^ENST00000499732.3" ; Parent "NCOR1--NEAT1^NEAT1^ENSG00000245532.9" ; exon_id "ENSE00001965399.1" ; exon_number 1 ; gene_id "NCOR1--NEAT1^NEAT1^ENSG00000245532.9" ; gene_name NEAT1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166321.8" ; havana_transcript "OTTHUMT00000389141.3" ; hgnc_id "HGNC:30815" ; level 1 ; orig_coord_info "chr11,65422774,65423383,+" ; tag basic exp_conf ; transcript_id "NCOR1--NEAT1^ENST00000499732.3" ; transcript_name "NEAT1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
NEAT1--NCOR1 HAVANA gene 1001 4684 . + . FI_gene_label "NEAT1^ENSG00000245532.9" ; ID "NEAT1--NCOR1^NEAT1^ENSG00000245532.9" ; exon_id "ENSE00001965399.1" ; exon_number 1 ; gene_id "NEAT1--NCOR1^NEAT1^ENSG00000245532.9" ; gene_name NEAT1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166321.8" ; havana_transcript "OTTHUMT00000389141.3" ; hgnc_id "HGNC:30815" ; level 1 ; orig_coord_info "chr11,65422774,65423383,+" ; tag basic exp_conf ; transcript_id "NEAT1--NCOR1^ENST00000499732.3" ; transcript_name "NEAT1-201" ; transcript_support_level 2 ; transcript_type lncRNA
NEAT1--NCOR1 HAVANA RNA 1001 4684 . + . FI_gene_label "NEAT1^ENSG00000245532.9" ; ID "NEAT1--NCOR1^ENST00000499732.3" ; Parent "NEAT1--NCOR1^NEAT1^ENSG00000245532.9" ; exon_id "ENSE00001965399.1" ; exon_number 1 ; gene_id "NEAT1--NCOR1^NEAT1^ENSG00000245532.9" ; gene_name NEAT1 ; gene_type lncRNA ; havana_gene "OTTHUMG00000166321.8" ; havana_transcript "OTTHUMT00000389141.3" ; hgnc_id "HGNC:30815" ; level 1 ; orig_coord_info "chr11,65422774,65423383,+" ; tag basic exp_conf ; transcript_id "NEAT1--NCOR1^ENST00000499732.3" ; transcript_name "NEAT1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
NPLOC4--AC104688.1 HAVANA gene 34740 37828 . + . FI_gene_label "AC104688.1^ENSG00000233689.2" ; ID "NPLOC4--AC104688.1^AC104688.1^ENSG00000233689.2" ; exon_id "ENSE00003870424.1" ; exon_number 1 ; gene_id "NPLOC4--AC104688.1^AC104688.1^ENSG00000233689.2" ; gene_name "AC104688.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156611.2" ; havana_transcript "OTTHUMT00000344771.2" ; level 1 ; orig_coord_info "chr7,69026433,69026482,+" ; tag basic TAGENE exp_conf ; transcript_id "NPLOC4--AC104688.1^ENST00000447158.2" ; transcript_name "AC104688.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
NPLOC4--AC104688.1 HAVANA RNA 34740 37828 . + . FI_gene_label "AC104688.1^ENSG00000233689.2" ; ID "NPLOC4--AC104688.1^ENST00000447158.2" ; Parent "NPLOC4--AC104688.1^AC104688.1^ENSG00000233689.2" ; exon_id "ENSE00003870424.1" ; exon_number 1 ; gene_id "NPLOC4--AC104688.1^AC104688.1^ENSG00000233689.2" ; gene_name "AC104688.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000156611.2" ; havana_transcript "OTTHUMT00000344771.2" ; level 1 ; orig_coord_info "chr7,69026433,69026482,+" ; tag basic TAGENE exp_conf ; transcript_id "NPLOC4--AC104688.1^ENST00000447158.2" ; transcript_name "AC104688.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
NPLOC4--RNA5SP231 ENSEMBL gene 34740 34877 . + . FI_gene_label "RNA5SP231^ENSG00000222428.1" ; ID "NPLOC4--RNA5SP231^RNA5SP231^ENSG00000222428.1" ; exon_id "ENSE00001590314.1" ; exon_number 1 ; gene_id "NPLOC4--RNA5SP231^RNA5SP231^ENSG00000222428.1" ; gene_name RNA5SP231 ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:43131" ; level 3 ; orig_coord_info "chr7,68723911,68724048,-" ; tag basic ; transcript_id "NPLOC4--RNA5SP231^ENST00000410496.1" ; transcript_name "RNA5SP231-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
NPLOC4--RNA5SP231 ENSEMBL RNA 34740 34877 . + . FI_gene_label "RNA5SP231^ENSG00000222428.1" ; ID "NPLOC4--RNA5SP231^ENST00000410496.1" ; Parent "NPLOC4--RNA5SP231^RNA5SP231^ENSG00000222428.1" ; exon_id "ENSE00001590314.1" ; exon_number 1 ; gene_id "NPLOC4--RNA5SP231^RNA5SP231^ENSG00000222428.1" ; gene_name RNA5SP231 ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:43131" ; level 3 ; orig_coord_info "chr7,68723911,68724048,-" ; tag basic ; transcript_id "NPLOC4--RNA5SP231^ENST00000410496.1" ; transcript_name "RNA5SP231-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
L1 and L2 created:
PCAT18--CHST9 HAVANA gene 1001 4598 . + . FI_gene_label "PCAT18^ENSG00000265369.3" ; ID "PCAT18--CHST9^PCAT18^ENSG00000265369.3" ; exon_id "ENSE00002695183.1" ; exon_number 1 ; gene_id "PCAT18--CHST9^PCAT18^ENSG00000265369.3" ; gene_name PCAT18 ; gene_type lncRNA ; havana_gene "OTTHUMG00000179450.1" ; havana_transcript "OTTHUMT00000446446.1" ; hgnc_id "HGNC:49211" ; level 2 ; orig_coord_info "chr18,26703392,26703638,-" ; tag basic ; transcript_id "PCAT18--CHST9^ENST00000579458.1" ; transcript_name "PCAT18-201" ; transcript_support_level 2 ; transcript_type lncRNA
PCAT18--CHST9 HAVANA RNA 1001 4598 . + . FI_gene_label "PCAT18^ENSG00000265369.3" ; ID "PCAT18--CHST9^ENST00000579458.1" ; Parent "PCAT18--CHST9^PCAT18^ENSG00000265369.3" ; exon_id "ENSE00002695183.1" ; exon_number 1 ; gene_id "PCAT18--CHST9^PCAT18^ENSG00000265369.3" ; gene_name PCAT18 ; gene_type lncRNA ; havana_gene "OTTHUMG00000179450.1" ; havana_transcript "OTTHUMT00000446446.1" ; hgnc_id "HGNC:49211" ; level 2 ; orig_coord_info "chr18,26703392,26703638,-" ; tag basic ; transcript_id "PCAT18--CHST9^ENST00000579458.1" ; transcript_name "PCAT18-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
ROCK1--AC007948.1 HAVANA gene 41772 43013 . + . FI_gene_label "AC007948.1^ENSG00000263863.1" ; ID "ROCK1--AC007948.1^AC007948.1^ENSG00000263863.1" ; exon_id "ENSE00002713821.1" ; exon_number 1 ; gene_id "ROCK1--AC007948.1^AC007948.1^ENSG00000263863.1" ; gene_name "AC007948.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178486.1" ; havana_transcript "OTTHUMT00000442191.1" ; level 2 ; orig_coord_info "chr18,65125600,65125710,-" ; tag basic ; transcript_id "ROCK1--AC007948.1^ENST00000581632.1" ; transcript_name "AC007948.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
ROCK1--AC007948.1 HAVANA RNA 41772 43013 . + . FI_gene_label "AC007948.1^ENSG00000263863.1" ; ID "ROCK1--AC007948.1^ENST00000581632.1" ; Parent "ROCK1--AC007948.1^AC007948.1^ENSG00000263863.1" ; exon_id "ENSE00002713821.1" ; exon_number 1 ; gene_id "ROCK1--AC007948.1^AC007948.1^ENSG00000263863.1" ; gene_name "AC007948.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178486.1" ; havana_transcript "OTTHUMT00000442191.1" ; level 2 ; orig_coord_info "chr18,65125600,65125710,-" ; tag basic ; transcript_id "ROCK1--AC007948.1^ENST00000581632.1" ; transcript_name "AC007948.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
ROCK1--AC090348.1 HAVANA gene 41772 46116 . + . FI_gene_label "AC090348.1^ENSG00000286800.1" ; ID "ROCK1--AC090348.1^AC090348.1^ENSG00000286800.1" ; exon_id "ENSE00003861610.1" ; exon_number 1 ; gene_id "ROCK1--AC090348.1^AC090348.1^ENSG00000286800.1" ; gene_name "AC090348.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194321.1" ; havana_transcript "OTTHUMT00000514372.1" ; level 2 ; orig_coord_info "chr18,64992634,64992828,-" ; tag basic TAGENE ; transcript_id "ROCK1--AC090348.1^ENST00000662570.1" ; transcript_name "AC090348.1-201" ; transcript_type lncRNA
ROCK1--AC090348.1 HAVANA RNA 41772 46116 . + . FI_gene_label "AC090348.1^ENSG00000286800.1" ; ID "ROCK1--AC090348.1^ENST00000662570.1" ; Parent "ROCK1--AC090348.1^AC090348.1^ENSG00000286800.1" ; exon_id "ENSE00003861610.1" ; exon_number 1 ; gene_id "ROCK1--AC090348.1^AC090348.1^ENSG00000286800.1" ; gene_name "AC090348.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194321.1" ; havana_transcript "OTTHUMT00000514372.1" ; level 2 ; orig_coord_info "chr18,64992634,64992828,-" ; tag basic TAGENE ; transcript_id "ROCK1--AC090348.1^ENST00000662570.1" ; transcript_name "AC090348.1-201" ; transcript_type lncRNA
L1 and L2 created:
TCF7L2--LINC01435 HAVANA gene 34368 62240 . + . FI_gene_label "LINC01435^ENSG00000229981.8" ; ID "TCF7L2--LINC01435^LINC01435^ENSG00000229981.8" ; exon_id "ENSE00001724335.1" ; exon_number 1 ; gene_id "TCF7L2--LINC01435^LINC01435^ENSG00000229981.8" ; gene_name LINC01435 ; gene_type lncRNA ; havana_gene "OTTHUMG00000019020.11" ; havana_transcript "OTTHUMT00000050240.1" ; hgnc_id "HGNC:50753" ; level 2 ; orig_coord_info "chr10,108069182,108069294,-" ; tag basic ; transcript_id "TCF7L2--LINC01435^ENST00000425050.5" ; transcript_name "LINC01435-201" ; transcript_support_level 3 ; transcript_type lncRNA
TCF7L2--LINC01435 HAVANA RNA 34368 62240 . + . FI_gene_label "LINC01435^ENSG00000229981.8" ; ID "TCF7L2--LINC01435^ENST00000425050.5" ; Parent "TCF7L2--LINC01435^LINC01435^ENSG00000229981.8" ; exon_id "ENSE00001724335.1" ; exon_number 1 ; gene_id "TCF7L2--LINC01435^LINC01435^ENSG00000229981.8" ; gene_name LINC01435 ; gene_type lncRNA ; havana_gene "OTTHUMG00000019020.11" ; havana_transcript "OTTHUMT00000050240.1" ; hgnc_id "HGNC:50753" ; level 2 ; orig_coord_info "chr10,108069182,108069294,-" ; tag basic ; transcript_id "TCF7L2--LINC01435^ENST00000425050.5" ; transcript_name "LINC01435-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TCF7L2--RNA5SP326 ENSEMBL gene 28779 28888 . + . FI_gene_label "RNA5SP326^ENSG00000200079.1" ; ID "TCF7L2--RNA5SP326^RNA5SP326^ENSG00000200079.1" ; exon_id "ENSE00001437972.1" ; exon_number 1 ; gene_id "TCF7L2--RNA5SP326^RNA5SP326^ENSG00000200079.1" ; gene_name RNA5SP326 ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:43226" ; level 3 ; orig_coord_info "chr10,107461560,107461669,+" ; tag basic ; transcript_id "TCF7L2--RNA5SP326^ENST00000363209.1" ; transcript_name "RNA5SP326-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
TCF7L2--RNA5SP326 ENSEMBL RNA 28779 28888 . + . FI_gene_label "RNA5SP326^ENSG00000200079.1" ; ID "TCF7L2--RNA5SP326^ENST00000363209.1" ; Parent "TCF7L2--RNA5SP326^RNA5SP326^ENSG00000200079.1" ; exon_id "ENSE00001437972.1" ; exon_number 1 ; gene_id "TCF7L2--RNA5SP326^RNA5SP326^ENSG00000200079.1" ; gene_name RNA5SP326 ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:43226" ; level 3 ; orig_coord_info "chr10,107461560,107461669,+" ; tag basic ; transcript_id "TCF7L2--RNA5SP326^ENST00000363209.1" ; transcript_name "RNA5SP326-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
906 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 1 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1379 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 86 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed