Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/0352010e5727c976f7d16ce88a08da/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/7ea0f8f076235c7fee20fc4ed63f90/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/7ea0f8f076235c7fee20fc4ed63f90/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/eb1b4bc33e6f99dbd09d96c103560c/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/e87537765025c6c20022ca0a8a658b/aih-tih-sc-19e09e-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: aih-tih-sc-19e09e-R1_A23WJ53LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (11885789) splicing reads. 239356 splicing junctions. 178785 known splicing junctions. 60571 novel splicing junctions.
sampling 10% (23771579) splicing reads. 281525 splicing junctions. 189292 known splicing junctions. 92233 novel splicing junctions.
sampling 15% (35657369) splicing reads. 308122 splicing junctions. 194605 known splicing junctions. 113517 novel splicing junctions.
sampling 20% (47543158) splicing reads. 326812 splicing junctions. 197765 known splicing junctions. 129047 novel splicing junctions.
sampling 25% (59428948) splicing reads. 340266 splicing junctions. 199897 known splicing junctions. 140369 novel splicing junctions.
sampling 30% (71314738) splicing reads. 350860 splicing junctions. 201440 known splicing junctions. 149420 novel splicing junctions.
sampling 35% (83200527) splicing reads. 359178 splicing junctions. 202667 known splicing junctions. 156511 novel splicing junctions.
sampling 40% (95086317) splicing reads. 365838 splicing junctions. 203540 known splicing junctions. 162298 novel splicing junctions.
sampling 45% (106972107) splicing reads. 371492 splicing junctions. 204330 known splicing junctions. 167162 novel splicing junctions.
sampling 50% (118857897) splicing reads. 375997 splicing junctions. 204905 known splicing junctions. 171092 novel splicing junctions.
sampling 55% (130743686) splicing reads. 379757 splicing junctions. 205350 known splicing junctions. 174407 novel splicing junctions.
sampling 60% (142629476) splicing reads. 383027 splicing junctions. 205743 known splicing junctions. 177284 novel splicing junctions.
sampling 65% (154515266) splicing reads. 385713 splicing junctions. 206050 known splicing junctions. 179663 novel splicing junctions.
sampling 70% (166401055) splicing reads. 387958 splicing junctions. 206320 known splicing junctions. 181638 novel splicing junctions.
sampling 75% (178286845) splicing reads. 389842 splicing junctions. 206541 known splicing junctions. 183301 novel splicing junctions.
sampling 80% (190172635) splicing reads. 391399 splicing junctions. 206720 known splicing junctions. 184679 novel splicing junctions.
sampling 85% (202058424) splicing reads. 392632 splicing junctions. 206874 known splicing junctions. 185758 novel splicing junctions.
sampling 90% (213944214) splicing reads. 393563 splicing junctions. 206995 known splicing junctions. 186568 novel splicing junctions.
sampling 95% (225830004) splicing reads. 394299 splicing junctions. 207090 known splicing junctions. 187209 novel splicing junctions.
sampling 100% (237715794) splicing reads. 394727 splicing junctions. 207142 known splicing junctions. 187585 novel splicing junctions.
null device 
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