File Info

Filename
aih-tih-sc-06a169-R1_A23WJ53LT4_1.Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/dc3aec2566cd6ee505f0009abe4574/aih-tih-sc-06a169-R1_A23WJ53LT4_1.Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 07:52:24
                             Started mapping on |	Jun 08 07:54:55
                                    Finished on |	Jun 08 08:36:17
       Mapping speed, Million of reads per hour |	398.63

                          Number of input reads |	274831184
                      Average input read length |	251
                                    UNIQUE READS:
                   Uniquely mapped reads number |	262170547
                        Uniquely mapped reads % |	95.39%
                          Average mapped length |	250.70
                       Number of splices: Total |	279936744
            Number of splices: Annotated (sjdb) |	276546439
                       Number of splices: GT/AG |	277084095
                       Number of splices: GC/AG |	2074562
                       Number of splices: AT/AC |	251248
               Number of splices: Non-canonical |	526839
                      Mismatch rate per base, % |	0.21%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.05
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.55
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8068741
             % of reads mapped to multiple loci |	2.94%
        Number of reads mapped to too many loci |	348024
             % of reads mapped to too many loci |	0.13%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	409898
       % of reads unmapped: too many mismatches |	0.15%
            Number of reads unmapped: too short |	2043213
                 % of reads unmapped: too short |	0.74%
                Number of reads unmapped: other |	243902
                     % of reads unmapped: other |	0.09%
                                  CHIMERIC READS:
                       Number of chimeric reads |	2995994
                            % of chimeric reads |	1.09%